RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6027
(531 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 5e-13
Identities = 85/497 (17%), Positives = 147/497 (29%), Gaps = 126/497 (25%)
Query: 96 SFLKIVQKLLESLDPDLQILATNSFVR--FANIEED----TPSYHRRYDFFVSKFSALCH 149
+ I+ ++ + + + E D + F L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLL- 72
Query: 150 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVEN---IWESTHMEKIIPSLLFNMQESG 206
+K+ + +++K V + L N + E+ PS++ M
Sbjct: 73 ------SKQEE-----------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 207 HYQSPADPEPEAEETGKMMNLQEDPPALA-ETCLRELMSRASFNHVKNVI---------- 255
+ D + A+ N+ P L L EL KNV+
Sbjct: 116 RDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLEL------RPAKNVLIDGVLGSGKT 164
Query: 256 ---------QPVLIHFDHHALW----NPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLN 302
V D W N N VL ML Q + N +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEML----QKLLYQIDPN--WTSRS 217
Query: 303 DHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVL--------YTTLTLLCIELI--S 352
DH S+ L I L +++ L VL + L C L+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 353 DDTVVDFIRVIMRIQ-EIALTSTTLSDSQKYNLHALVA--ALFTL---VPLVSPI----- 401
V DF+ + S TL+ + +L L V +P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 402 -TNIRDYVN-----KTIAARQEHKTY-----HLLP-ELREFAANLPDYQKTEIL---VFI 446
+IRD + K + + L P E R+ + + + I
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLSVFPPSAHI 387
Query: 447 ISKVLSTTYRESNKSE-HTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSN 505
+ +LS + + KS+ +V + SL+ K + + I P +LE LK+ N
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLE--LKVKLEN 441
Query: 506 DAEI-RLLVNKEKARKK 521
+ + R +V+ K
Sbjct: 442 EYALHRSIVDHYNIPKT 458
Score = 62.9 bits (152), Expect = 1e-10
Identities = 80/577 (13%), Positives = 159/577 (27%), Gaps = 183/577 (31%)
Query: 7 SRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRR 66
S Y D ++ + + Y +S + ++ + L + R
Sbjct: 106 SMMTRMYIEQRDRLY----------NDNQVFAKYNVSRLQPYLKLRQALLEL-------R 148
Query: 67 RNGYVVIAMEAMD----QLLAA--CHSQTL------NLF---------VESFLKIVQKLL 105
V+I + + +A C S + +F E+ L+++QKLL
Sbjct: 149 PAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 106 ESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKF--SAL------CHSNYAD--- 154
+DP+ + +S I SK + L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 155 ------VTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHY 208
+T R K V+D L ++ +L
Sbjct: 264 LSCKILLTTRF---------------KQVTDFLSAATTTHISLDHHSMTLT--------- 299
Query: 209 QSPADPEPEAEET-GKMMNL--QEDPPALAETCLRELMSRASFNHVKNVIQPVLIHF--- 262
E + K ++ Q+ P E P +
Sbjct: 300 ------PDEVKSLLLKYLDCRPQDLPR---EVLT---------------TNPRRLSIIAE 335
Query: 263 ---DHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADAL 319
D A W+ + + + + +I + L L P+ R K+ D L
Sbjct: 336 SIRDGLATWDN-------WKHVNC---DKLTTIIESS-LNVLE-----PAEYR-KMFDRL 378
Query: 320 SKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVV------DFIRVIMRIQEIALTS 373
S + S I +L +++ + + ++ + + I I L
Sbjct: 379 S-VFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-E 434
Query: 374 TTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQE------HKTYHLLP-- 425
+ +Y LH +V + + + + H +HL
Sbjct: 435 LKVKLENEYALHRS---------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 426 ---ELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSE--HTLVQNMFMKSLLMVSGK 480
+ F D++ F+ K+ + + +TL Q F K
Sbjct: 486 HPERMTLFRMVFLDFR------FLEQKIRHDSTAWNASGSILNTLQQLKFYK-------P 532
Query: 481 YTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEK 517
Y C + + +L L E L+ +K
Sbjct: 533 YICDN--DPKYERLVNAILDFLPK--IEENLICSKYT 565
Score = 39.8 bits (92), Expect = 0.002
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 11 PRYKRLVDNI--FPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISR 65
P+Y+RLV+ I F EE L+ + L AL + + E +++ A + + R
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED------EAIFEEAHKQVQR 589
Score = 32.9 bits (74), Expect = 0.31
Identities = 40/284 (14%), Positives = 90/284 (31%), Gaps = 54/284 (19%)
Query: 261 HFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALS 320
H HH H + Q QY ++ A++++ + D
Sbjct: 1 HHHHH----------H-MDFETGEHQYQYKDILSVFEDAFVDN------FDCKDVQDMPK 43
Query: 321 KIISIAASESI--GPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSD 378
I+S + I + L + ++ V F+ +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFV----------------EE 85
Query: 379 SQKYNLHALVAALFTLVPLVSPITNI-RDYVNKTIAARQEHKTYH-----LLPELREFAA 432
+ N L++ + T S +T + + ++ Q Y+ +LR+
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 433 NLPDYQKTEILVFI-----ISK-VLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHI 486
L + V I K ++ S K + + +F +L + T L +
Sbjct: 146 EL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 487 SSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIESHVKK 530
L ++P + + I+L ++ +A ++ ++S +
Sbjct: 202 LQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 8e-08
Identities = 76/488 (15%), Positives = 143/488 (29%), Gaps = 173/488 (35%)
Query: 5 CFSRFRPRYKRLVDN-I------FPLSPEEGLVKTNMEKLTFYA--LSSPEKLDRIGE-Y 54
C + F Y L N I + LVKT + + + D+
Sbjct: 87 CLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 55 LYQRASRDISR---------RRNGYVVIAMEAMDQLLAACHSQTL----NLFVESFLKIV 101
L++ ++ + Y ++L + L ++ V +K
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYF-------EEL------RDLYQTYHVLVGDLIKFS 191
Query: 102 QKLLESL---DPDLQILATNSF--VRFANIEEDTPSYHRRYDFFVS-KFS-------ALC 148
+ L L D + + T + + +TP D+ +S S L
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD----KDYLLSIPISCPLIGVIQLA 247
Query: 149 HSNYADVTKRNKL-------RLAGIRG-IQGVIRKTV---SDDLVENIWES--THMEKII 195
H Y K L G G QG++ +D WES + K I
Sbjct: 248 H--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-----WESFFVSVRKAI 300
Query: 196 PSLLFNM----QES-GHYQSPADPEPEAEETGKMMNLQEDPPA-------LAETCLRELM 243
++LF + E+ + P ++ E E P+ L + +++ +
Sbjct: 301 -TVLFFIGVRCYEAYPNTSLPPSILEDSLENN------EGVPSPMLSISNLTQEQVQDYV 353
Query: 244 SRASFNHVKNVIQPVLIHFDHHALWN-PNIFATHV-------LRMLMYSV---------- 285
++ N + V I +L N V L L ++
Sbjct: 354 NK--TNSHLPAGKQVEI-----SLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 286 QSQ--YSHLIVNCILAYLND----HHSSPSLIRAK---IADALSKIISIAASE------- 329
QS+ +S + +L H S L+ A D + +S A +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 330 --------SIGPTVLEVLYTTLTLLCI--ELISDDT---VVDF----------------- 359
+ ++ E + + L + E + ++DF
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 360 ---IRVIM 364
+RVI+
Sbjct: 522 GTGVRVIV 529
Score = 48.5 bits (115), Expect = 5e-06
Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 80/275 (29%)
Query: 276 HVLRMLMYSVQS-QYSHLIVNCILAYLNDHHSSPSLIRA-KIADALSKIISIAASESIG- 332
+ R L S S ++ L+ + S A ++ + +KI+
Sbjct: 4 YSTRPLTLSHGSLEHVLLV------------PTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 333 --PT-VLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALT---STTLSDSQKYNLHA 386
PT E L L+ V F +V+ + LT + L + ++HA
Sbjct: 52 DEPTTPAE-LVGKFLGYVSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGN---DIHA 103
Query: 387 LVAALFTLVPLVSPITN--IRDY------VNKTI-----------AARQEHKTYHL---- 423
L A L T I++Y + + +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 424 ------LPELREFAANLPDYQ--KTEI--LVFIISKVLSTTYRESNKSEHTLVQNMFMKS 473
ELR+ YQ + L+ ++ LS R + +E Q + +
Sbjct: 164 GNTDDYFEELRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 474 LLMVSGK-----YTCLHISSAFPLAFLEPLLKILQ 503
L Y S P++ PL+ ++Q
Sbjct: 218 WLENPSNTPDKDYLL----SI-PISC--PLIGVIQ 245
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 48.6 bits (115), Expect = 4e-06
Identities = 65/480 (13%), Positives = 145/480 (30%), Gaps = 70/480 (14%)
Query: 74 AMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSY 133
A+ ++Q + + +Q L L ++SF++ + L +P+++ + V E
Sbjct: 194 AVACVNQFIIS-RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL---EVRMDR 249
Query: 134 HRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEK 193
+ + ++ + + + L + + + D++ H+ K
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDE-----NVALEACEFWLTLAEQPICKDVLVR-----HLPK 299
Query: 194 IIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKN 253
+IP L+ M+ S + E G + + L L N ++
Sbjct: 300 LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL-----ANVYRD 354
Query: 254 VIQPVLIHFDHHALWNPN-------IFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHS 306
+ P ++ L++ I + Y ++ ++ L+D
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK- 413
Query: 307 SPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLL-----------CIELIS--- 352
+L+R+ LS+ S+ + ++ L + C +
Sbjct: 414 --ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
Query: 353 --DDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYV-- 408
+V ++ I+ S Q NL L A+ TL V N +Y+
Sbjct: 472 EACTELVPYLAYILDT-----LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM 526
Query: 409 ------NKTIAARQEHKTYHLLPE--------LREFAANLPDYQKTEILVFIISKVLSTT 454
K + E K L E L+ + + + +
Sbjct: 527 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM 586
Query: 455 YRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPL----AFLEPLLKILQSNDAEIR 510
+ ++ FM L + + L L + + +Q E+R
Sbjct: 587 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Length = 297
Score = 30.6 bits (68), Expect = 1.3
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 169 IQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQ-------SPADPEPEAEET 221
I+ I +VS L + T + S + + Q S A E ET
Sbjct: 8 IESSIGDSVSRALTHALPAPTGQNTQVSSHRLDTGKVPALQAAEIGASSNASDE-SMIET 66
Query: 222 GKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLR 279
++N + AET L SRA ++ + + +A W+ +I +R
Sbjct: 67 RCVLNSH----STAETTLDSFFSRAGLVGEIDLPLKGTTNPNGYANWDIDITGYAQMR 120
>1d4m_1 Protein (coxsackievirus A9); picornavirus structure, RGD,
uncoating, virus-receptor interaction, WIN compound,
virus/viral protein; HET: MYR W71; 2.90A {Human
coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_A* 1upn_A
2c8i_A 1m11_1 2x5i_A* 3iyp_A*
Length = 299
Score = 30.1 bits (67), Expect = 1.6
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 201 NMQESGHYQSPADPEPEAEETGKMMNLQED----------PPALAETCLRELMSRASFNH 250
+ SG S + P A ETG + + +E+ + + R++ +
Sbjct: 16 DTMRSGPSNSASVPALTAVETGHTSQVTPSDTMQTRHVKNYHSRSESTVENFLGRSACVY 75
Query: 251 VKNVIQPVLIHFDHHALWNPNIFATHVLRM 280
++ W N +R
Sbjct: 76 MEEYKTTDNDVNKKFVAWPINTKQMVQMRR 105
>3hmz_A Flavin reductase domain protein, FMN-binding; FMN-binding domain of
flavin reductases-like enzyme, structu genomics; HET:
MSE FMN; 1.50A {Shewanella baltica}
Length = 199
Score = 28.9 bits (65), Expect = 3.1
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 411 TIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHT 464
T+ + KT + + F +P + ++ + S+ + ++NK +
Sbjct: 61 TVVLDKMTKTREFIEQSGMFVIQVPTVAQLQLTHRVGSQ---SLADDANKLLNC 111
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1*
1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1*
1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1*
2hwe_1* 2hwf_1*
Length = 285
Score = 29.0 bits (64), Expect = 4.1
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 169 IQGVIRKTVSDDL-VENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNL 227
++ + + +++ L V NI +S +L E+GH + PE + ET + +
Sbjct: 3 VERYVDEVLNEVLVVPNINQSHPTTSNAAPVLDAA-ETGH-TNKIQPE-DTIETRYVQSS 59
Query: 228 QEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLR 279
Q L E + + R+ H + + WN N+ +R
Sbjct: 60 Q----TLDEMSVESFLGRSGCIHESVLDIVDNYNDQSFTKWNINLQEMAQIR 107
>3bnk_A Flavoredoxin; protein-FMN complex, electron transport; HET: FMN;
2.05A {Methanosarcina acetivorans}
Length = 196
Score = 28.1 bits (63), Expect = 5.0
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 411 TIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTY-RESNKSEHT 464
+ + H T + E F+ N P + + + +KS
Sbjct: 48 GVGVNKSHYTPEGIAENGSFSVNFPYSGMVKKTDY-----CGLVSGEKVDKSGLF 97
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral
protein, icosahedral virus; HET: MYR G; 3.20A {Human
coxsackievirus A21} PDB: 1z7z_1*
Length = 298
Score = 28.2 bits (62), Expect = 5.9
Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 168 GIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNL 227
GI+ +I + + L P + + + S P A ETG
Sbjct: 1 GIEDLIDTAIKNALRV----------SQPPSTQSTEATSGVNSQEVPALTAVETGASGQA 50
Query: 228 Q-EDPPAL---------AETCLRELMSRASFNHVK--NVIQPVLIHFDHHALWNPNIFAT 275
D +E+CL RA+ + H +WN T
Sbjct: 51 IPSDVVETRHVVNYKTRSESCLESFFGRAACVTILSLTNSSKSGEEKKHFNIWNITYTDT 110
Query: 276 HVLR 279
LR
Sbjct: 111 VQLR 114
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of
pathogenic protozoa consortium, SGPP, structural
genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum}
SCOP: d.96.1.2
Length = 181
Score = 28.0 bits (62), Expect = 6.2
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 248 FNHVKNVIQPVLIHFDHHALW---NPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDH 304
F+ +K ++ V DHH + + + +V + + + L
Sbjct: 72 FSILKEKVKKVCNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIK 131
Query: 305 HSSPSLIRAKIADALSKIISIAASESIGPTVLEV 338
HSS I I + L + + ++ +S +E+
Sbjct: 132 HSSTEEIGQYILNQLIEEMDVSLLKSRHIHYIEI 165
>3jyg_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.95A {Wolinella
succinogenes}
Length = 188
Score = 27.8 bits (61), Expect = 7.1
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 248 FNHVKNVIQPVLIHFDHHALWNPN 271
F H+ + + DH + + +
Sbjct: 63 FAHLNWFKRFIDEVLDHRFIIDID 86
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 28.3 bits (62), Expect = 8.8
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 49 DRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESL 108
R +++ Q +R +R R IA MD +L + + S+L+ + L + +
Sbjct: 675 QRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKV 734
Query: 109 DPDLQILATN 118
D D + ++++
Sbjct: 735 DEDWEGISSS 744
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.382
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,004,717
Number of extensions: 487732
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 26
Length of query: 531
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 433
Effective length of database: 3,965,535
Effective search space: 1717076655
Effective search space used: 1717076655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)