RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6027
         (531 letters)



>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
           1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 34/288 (11%), Positives = 83/288 (28%), Gaps = 24/288 (8%)

Query: 77  AMDQLLAACHSQTLNLFVESFLKIVQKLLESL---DPDLQILATNSFVRFAN-IEEDTPS 132
           A + L+      ++ L  +S  K+V+ +L+ L   + ++Q LA        + ++E    
Sbjct: 23  ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 82

Query: 133 YHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGI----------RGIQGVIRKTVSDDLV 182
                   V        S+   +   + + L  +            +   + K ++  L 
Sbjct: 83  T------IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 136

Query: 183 ENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPAL---AETCL 239
             I +   +   + +L                   +  T  +  L     A+       L
Sbjct: 137 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 196

Query: 240 RELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILA 299
             L+         ++I+ +L     +   +        +  +      +    +   I  
Sbjct: 197 GHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL 256

Query: 300 YLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLC 347
            +   +     +R     A    +     E + P V  ++   L  L 
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLT 303


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.0 bits (64), Expect = 1.6
 Identities = 40/426 (9%), Positives = 113/426 (26%), Gaps = 67/426 (15%)

Query: 109 DPDLQILATNSFVRFANIEEDTPSYHR----------RYDFFVSKFSALCHSNYADVTKR 158
           + +L  L  N+                                  F+             
Sbjct: 97  NSELIRLINNAIKNDLA---SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTM 153

Query: 159 NKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKII----PSLLFNMQESGHYQSPADP 214
           + ++ +    +  + R   S DLV     ++ +  ++      ++          +  +P
Sbjct: 154 DSVKQSAALCLLRLYRT--SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 211

Query: 215 EPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFA 274
           E         ++       +  +   +L     +      +   L+          +   
Sbjct: 212 EEFKTSVSLAVSRLSR---IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 268

Query: 275 THVLRMLMYSVQSQYSHLIVNCILAYLNDHHS-SPSLIRAKIADALSKIISIAASESIGP 333
              L   + ++ ++      +  + + N  ++     I   I       + + A   +G 
Sbjct: 269 RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ 328

Query: 334 TVL----EVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVA 389
            +      + Y  L  +C    S+ +       I  +     T   +S  Q+        
Sbjct: 329 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQR-------- 380

Query: 390 ALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISK 449
           A+  L  +    +N +                 ++ E+  +        + E    I+ K
Sbjct: 381 AVDLLYAMCDR-SNAQQ----------------IVAEMLSYLETADYSIREE----IVLK 419

Query: 450 VLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEI 509
           V     + +      +     + +L+ ++G Y    +           +++I+ + D   
Sbjct: 420 VAILAEKYAVDYTWYV---DTILNLIRIAGDYVSEEVWYR--------VIQIVINRDDVQ 468

Query: 510 RLLVNK 515
                 
Sbjct: 469 GYAAKT 474


>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 405

 Score = 26.9 bits (59), Expect = 6.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 499 LKILQSNDAEIRLLVNKEKARKKKKIE 525
           +K L   D ++   + +E+ R+  KIE
Sbjct: 1   MKYLPQQDPQVFAAIEQERKRQHAKIE 27


>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 434

 Score = 26.7 bits (57), Expect = 7.3
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 248 FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIV--NCILAYLNDHH 305
              V + + P L+     A +     A   +         +    +V    I   +N   
Sbjct: 308 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367

Query: 306 SSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDD 354
           +  + I   I DA+S I   A        +  ++     L  IE +   
Sbjct: 368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 286

 Score = 26.4 bits (57), Expect = 8.9
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 223 KMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLM 282
           K + L+++   +  T +RE+       H  N+++   +      L          L+ L+
Sbjct: 32  KKIRLEKEDEGIPSTTIREISILKELKH-SNIVKLYDVIHTKKRLVLVFEHLDQDLKKLL 90

Query: 283 YSVQSQYSHLIVNC----ILAYLNDHHSSPSLIR 312
              +     +        +L  +   H    L R
Sbjct: 91  DVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHR 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,903,245
Number of extensions: 88985
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 17
Length of query: 531
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,171,896
Effective search space: 516806136
Effective search space used: 516806136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)