BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6028
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=2
SV=1
Length = 144
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 100/133 (75%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
SSHL W I++NNNA+L+K ++KK FS EP NL +++S++YSG++H KT+ + P AD K
Sbjct: 3 TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKK 62
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
GF V K+ +P K ++ ++K+GPRRSL KL+ ++G+KYRK+LT+AALRRASAVL
Sbjct: 63 GFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVL 122
Query: 122 QSQKRAQIPAKKS 134
+SQK A + KK+
Sbjct: 123 RSQKPAPVKGKKA 135
>sp|Q962T2|RL28_SPOFR 60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2
SV=1
Length = 139
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 89/124 (71%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+SSHL W I++NNNA+L+K NIKK FSKEP N+ NL S++Y+GLI K + + D K
Sbjct: 1 MSSHLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRK 60
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
GF V K+A KP K +++++K+G RRSL K+++ + N YR +L+KA LRRASA+L
Sbjct: 61 GFTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAIL 120
Query: 122 QSQK 125
+SQ+
Sbjct: 121 RSQR 124
>sp|P46779|RL28_HUMAN 60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3
Length = 137
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKAD 140
+SQK + K++ K+
Sbjct: 119 RSQKPVMVKRKRTRPTKSS 137
>sp|Q3T0L7|RL28_BOVIN 60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3
Length = 137
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKAD 140
+SQK + K S K+
Sbjct: 119 RSQKPVMVKRKPSRPTKSS 137
>sp|P41105|RL28_MOUSE 60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2
Length = 137
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKAD 140
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKSS 137
>sp|P17702|RL28_RAT 60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4
Length = 137
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++ D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKAD 140
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKSS 137
>sp|O82204|RL281_ARATH 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1
SV=1
Length = 143
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 11/143 (7%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVKNNN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAAD 63
Query: 59 DNKGFACVTKRATKKYKP----GKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAAL 114
++ T + K+ KP K+++K+E+ PR S + +V N YR +L KAAL
Sbjct: 64 KDQAVVLATTKTKKQNKPKLSVNKSILKKEF---PRMSKA-VANQVVDNYYRPDLKKAAL 119
Query: 115 RRASAVLQSQKRAQIPAKKSNKK 137
R SA+ + + A+ AK+ N++
Sbjct: 120 ARLSAISKGLRVAKSGAKQRNRQ 142
>sp|Q9M0E2|RL282_ARATH 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2
SV=1
Length = 143
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVK NN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAG 63
Query: 59 DNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRAS 118
++G T + ++ KP +V K K R + +V N YR +L KAAL R S
Sbjct: 64 KDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLS 123
Query: 119 AVLQSQKRAQIPAKKSNKK 137
A+ + + A+ K+ N++
Sbjct: 124 AISKGLRVAKSGPKRRNRQ 142
>sp|Q21930|RL28_CAEEL 60S ribosomal protein L28 OS=Caenorhabditis elegans GN=rpl-28 PE=1
SV=3
Length = 126
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W +++NN+A+L I K FS E NL + S KYSGL + I + A K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA--K 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G TK +K +P KAV P S+ +L K NK+ K A RRA+A++
Sbjct: 59 GVVVSTK--NEKGRPAKAVTTSTLSKTPVASVRRLAKNAGFNKF----NKLAQRRAAAIV 112
Query: 122 QSQ-KRAQI 129
+SQ K+A++
Sbjct: 113 RSQVKKAKV 121
>sp|O14069|RL28E_SCHPO Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpl28e PE=1 SV=1
Length = 134
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VS+ LIW ++++NN +L+K F++EP N+ + ++SGL + K + +Q +
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSP- 61
Query: 61 KGFACVTKRATKK-YKPGKAVIKQEWKSGPRRSLLKLRKYIVG-NKYRKELTKAALRRAS 118
+G +TK K KP K K + R K +G YR +L K ++ RAS
Sbjct: 62 RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARAS 121
Query: 119 AVLQSQK 125
A+L SQ+
Sbjct: 122 AILSSQR 128
>sp|Q9GS21|RL28_DICDI 60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2
SV=1
Length = 132
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W+I+K NNA+L + + S EPGNL N S KYSGL TI + A
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGLT--LSAEPGNLRNKNSLKYSGLARRTTIDV---AAVN 55
Query: 62 GFACVTKRATKKYK-PGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRR 116
G V+ + KK P ++ + + R + K + +Y EL AAL R
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTL-ATQYAPELRAAALGR 110
>sp|P0DJ20|RL28_TETTH 60S ribosomal protein L28 OS=Tetrahymena thermophila GN=RPL28 PE=1
SV=1
Length = 134
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 4 SHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGF 63
S L+W IVKNNNA+L+K + + F+ +P ++ + G H + ++ A
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGVA--FTTDPFSVTGRNTQVGLGFTHRHGVALKGGAKQAIA 59
Query: 64 ACVTKRATKKYKPGKAVIKQEW---KSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120
+ K + K K I+ E K G +R + K I G K L + AL++
Sbjct: 60 TSLRKNQSHKVKK-TGTIEAETLTVKGGVQR----VAKVIRGRFQSKGLKQFALKKLVNF 114
Query: 121 LQSQKRAQIPAKKSNKKK 138
++ RAQ K +K K
Sbjct: 115 HRANVRAQANLKAESKAK 132
>sp|A5FG55|Y2786_FLAJ1 UPF0173 metal-dependent hydrolase Fjoh_2786 OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=Fjoh_2786 PE=3 SV=1
Length = 225
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 7 IWNIVKNNNAYLMKADNI-----KKWFSKEPGNLP-----NLASFKYSGLIHSKTIHIQP 56
+ I KN NA ++ I KK F+ P N + KY IHS +
Sbjct: 58 VETIAKNTNAVIVSNAEITSYYAKKGFNSHPMNHGGSWKFDFGKVKYVNAIHSSSFPDGT 117
Query: 57 TADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRR 116
N G + Y G + + K P R+ L L +GN + ++ A +
Sbjct: 118 YGGNPGGFVIEGEHKNIYIAGDTALTYDMKLIPLRTKLDLAILPIGNNFTMDVEDAII-- 175
Query: 117 ASAVLQSQK 125
AS ++ K
Sbjct: 176 ASDFIECDK 184
>sp|Q8TKW2|COOS1_METAC Carbon monoxide dehydrogenase 1 OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=cooS1 PE=3 SV=1
Length = 628
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 35 LPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLL 94
+P+L + +G H+K I P AD G A + + Y K ++K ++ P R+L
Sbjct: 342 MPSLGNL--TGCYHTKFISTSPKADFPGTARMEFHEEEAYATAKEIVKAAVENFPNRNLK 399
Query: 95 KL 96
K+
Sbjct: 400 KV 401
>sp|Q0S0J9|UVRC_RHOSR UvrABC system protein C OS=Rhodococcus sp. (strain RHA1) GN=uvrC
PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 20 KADNIKKWFS--KEPG-NLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKP 76
KA ++ W S E G +LP L + + T G + V + P
Sbjct: 291 KAGDVIDWASVDSEAGSDLPLLVEQFLTQFYGEQAALSGATDQEAGTSGVPREVLVPVLP 350
Query: 77 GKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQK 125
A QEW SG R S ++LR G+K K L + R A+ LQ K
Sbjct: 351 PDAEQVQEWLSGLRGSAVRLRVPQRGDK--KALAETVQRNATEALQQHK 397
>sp|A6WL23|RDGC_SHEB8 Recombination-associated protein RdgC OS=Shewanella baltica
(strain OS185) GN=rdgC PE=3 SV=1
Length = 304
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 28 FSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQ 83
F+ P + +++ F +S + K + +ADN+ CVTK +K PG+ VIK+
Sbjct: 29 FTFSPCSSQDVSKFGFSNALGKKGCSLVHSADNRHLICVTKE--EKILPGQ-VIKE 81
>sp|P76161|REQ2_ECOLI Antitermination protein Q homolog from lambdoid prophage Qin
OS=Escherichia coli (strain K12) GN=quuQ PE=3 SV=2
Length = 250
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 35 LPNLASFKYSGLIHS-----KTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEW 85
+P L SF ++ S + H T GF V + K Y+ G++VIK+EW
Sbjct: 92 IPYLVSFAFADYSRSAASKARCEHCSGT----GFYNVLREVVKHYRRGESVIKEEW 143
>sp|O14161|CWC21_SCHPO Pre-mRNA-splicing factor cwf21 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf21 PE=1 SV=2
Length = 293
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 50 KTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKEL 109
+ + Q + D T T+ KP KA+IK E +SL + I+ KYR++L
Sbjct: 76 EEVSSQHSTDAAASDSNTNFGTENPKPPKAIIKDEQSQSKTKSLDEADVEILVQKYREQL 135
Query: 110 TKA-ALRRAS-------AVLQSQKRAQI 129
K L++++ ++LQ QKR +
Sbjct: 136 LKELQLQKSTEKGKNFESILQPQKRKET 163
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo
sapiens GN=USP9X PE=1 SV=3
Length = 2570
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 680 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 730
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo
sapiens GN=USP9Y PE=1 SV=2
Length = 2555
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 681 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 731
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus
musculus GN=Usp9x PE=1 SV=2
Length = 2559
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 680 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 730
>sp|A3D2D1|RDGC_SHEB5 Recombination-associated protein RdgC OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=rdgC PE=3 SV=1
Length = 304
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 28 FSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQ 83
F+ P + +++ F +S + K + +ADN+ CVTK +K PG+ VIK+
Sbjct: 29 FTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKE--EKILPGQ-VIKE 81
>sp|B8EAS7|RDGC_SHEB2 Recombination-associated protein RdgC OS=Shewanella baltica
(strain OS223) GN=rdgC PE=3 SV=1
Length = 304
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 28 FSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQ 83
F+ P + +++ F +S + K + +ADN+ CVTK +K PG+ VIK+
Sbjct: 29 FTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKE--EKILPGQ-VIKE 81
>sp|A9KTN4|RDGC_SHEB9 Recombination-associated protein RdgC OS=Shewanella baltica
(strain OS195) GN=rdgC PE=3 SV=1
Length = 304
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 28 FSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQ 83
F+ P + +++ F +S + K + +ADN+ CVTK +K PG+ VIK+
Sbjct: 29 FTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKE--EKILPGQ-VIKE 81
>sp|B4KFW6|FICD_DROMO Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila mojavensis GN=GI11595 PE=3 SV=1
Length = 502
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
A LM+ + W + E N +L Y+ L H K +HI P D G
Sbjct: 344 AILMQ--RFEHWLNSEQSN--SLHPVNYAALAHYKLVHIHPFVDGNG 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,300,390
Number of Sequences: 539616
Number of extensions: 1967209
Number of successful extensions: 5374
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5343
Number of HSP's gapped (non-prelim): 42
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)