Query psy6028
Match_columns 141
No_of_seqs 102 out of 300
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:41:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00197 60S ribosomal protein 100.0 1.2E-48 2.5E-53 297.0 11.8 115 3-125 4-118 (146)
2 KOG3412|consensus 100.0 1.3E-48 2.7E-53 289.6 8.9 129 1-129 2-131 (133)
3 PF01778 Ribosomal_L28e: Ribos 100.0 2E-46 4.4E-51 275.7 2.2 117 6-124 1-117 (117)
4 PLN00040 Protein MAK16 homolog 100.0 6.2E-35 1.3E-39 236.5 11.9 115 1-121 1-116 (233)
5 KOG3064|consensus 99.8 3E-20 6.5E-25 152.9 5.1 113 1-120 1-115 (303)
6 COG5129 MAK16 Nuclear protein 99.7 2.2E-17 4.7E-22 134.5 5.2 113 2-120 1-114 (303)
7 PF04272 Phospholamban: Phosph 28.3 30 0.00064 22.0 0.8 13 109-121 7-19 (52)
8 TIGR01294 P_lamban phospholamb 26.9 45 0.00098 21.1 1.5 13 109-121 7-19 (52)
9 KOG0996|consensus 26.4 57 0.0012 33.0 2.8 49 60-114 1176-1230(1293)
10 PF07028 DUF1319: Protein of u 16.8 1.3E+02 0.0029 22.7 2.5 34 93-126 19-60 (126)
No 1
>PTZ00197 60S ribosomal protein L28; Provisional
Probab=100.00 E-value=1.2e-48 Score=296.99 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=110.6
Q ss_pred CCcceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcceeEE
Q psy6028 3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIK 82 (141)
Q Consensus 3 S~dL~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~~~ 82 (141)
|+||||||||+|||||+|++ |.+||+||+||+|+||++||||+|+|+|||+ + |++||+|++|+.+..++|++++.+
T Consensus 4 S~dL~W~iVRnnnsFLvKr~--g~~FSrEP~NL~n~nS~KysGL~n~KaVgV~-~-~~kgVvv~tKk~k~~~kPak~~~~ 79 (146)
T PTZ00197 4 STDLQWLLVRQNSKFLQKRN--GIRLSSDPFNNNANWTKRHCGFLNTKAAVVK-T-KGDRILVTTKDGSSNNKPKQMYKK 79 (146)
T ss_pred chheeeeeeeccceeEEccC--CCcccCCCCccccccccccccccccceEEEE-e-cCCEEEEEEecCCCCCCCchheeE
Confidence 78999999999999999998 8999999999999999999999999999999 5 899999999999999999999999
Q ss_pred EeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcC
Q psy6028 83 QEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQK 125 (141)
Q Consensus 83 ~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk 125 (141)
++|++|+|++ .|++++.+ |||||+++|++|||||||||-
T Consensus 80 ~tlkkg~Rr~--~V~~~v~~--YR~DL~~aAlrRASAIlrs~~ 118 (146)
T PTZ00197 80 TVMAAGVRAS--VVSRAVAA--VRPDLASVAFRRARKMACTAS 118 (146)
T ss_pred EeeccCccHH--HHHHHHHh--hCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 59999876 999999999999999999974
No 2
>KOG3412|consensus
Probab=100.00 E-value=1.3e-48 Score=289.60 Aligned_cols=129 Identities=48% Similarity=0.745 Sum_probs=124.1
Q ss_pred CCCCcceeeeeecCeeeEEeeC-CCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028 1 MVSSHLIWNIVKNNNAYLMKAD-NIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA 79 (141)
Q Consensus 1 mmS~dL~W~ivr~nnsFlvK~~-~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~ 79 (141)
.||+||+||+||||||||+|+. +++.+||+||+||.++|||+||||+|+++|||+|+++++||++++|+.+.+++|+++
T Consensus 2 a~S~~L~W~VIRnNn~FL~k~r~~~k~~FstEpnNL~~vnS~rySGL~nkKtvgV~~aA~~kgvvv~~kk~K~aqkPAk~ 81 (133)
T KOG3412|consen 2 ATSGHLIWQVIRNNNAFLVKQRGNVKKQFSTEPNNLKNVNSYRYSGLANKKTVGVIPAADKKGVVVVTKKTKGAQKPAKS 81 (133)
T ss_pred CcccceeeeeeecCCceeeeeccccccccccCCcccccccccccccccccceeeeeecCCCceEEEEEeccccccCchhh
Confidence 3899999999999999999987 568999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcCccCC
Q psy6028 80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQI 129 (141)
Q Consensus 80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk~~~~ 129 (141)
+.+++|++++|+++++|++++..++|||||+++|++|+|+|.+++++++.
T Consensus 82 ~~k~~~~k~~r~s~k~la~~i~~nkYR~Dl~~aaiaR~s~~~k~~~v~kt 131 (133)
T KOG3412|consen 82 VVKSTLKKEPRRSLKSLANQIGDNKYRPDLRKAALARLSAISKSARVKKT 131 (133)
T ss_pred hhHHHHhcccHHHHHHHHHHhhhcccchHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999999999999998753
No 3
>PF01778 Ribosomal_L28e: Ribosomal L28e protein family; InterPro: IPR002672 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L28e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. In rat there are 9 or 10 copies of the L28 gene. The L28 protein contains a possible internal duplication of 9 residues [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_O 4A1B_O 4A18_O 4A19_O 3IZR_b.
Probab=100.00 E-value=2e-46 Score=275.71 Aligned_cols=117 Identities=49% Similarity=0.777 Sum_probs=96.2
Q ss_pred ceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcceeEEEee
Q psy6028 6 LIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEW 85 (141)
Q Consensus 6 L~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~~~~~l 85 (141)
|+|||||+|||||+|++++|.+||+||+||+|+||++||||||+++|||++++ +|+|+|++|+.+..++|+++|.+++|
T Consensus 1 L~W~iir~~~~Fl~K~~~~~~~fs~ep~NL~~~~s~kysgLan~k~v~V~~~~-~g~v~l~~K~~~~~~~P~k~~~~~~l 79 (117)
T PF01778_consen 1 LQWEIIRNNNCFLVKRNGIGKTFSREPGNLTNLNSFKYSGLANSKAVGVRPAP-NGGVVLVTKKPKRANKPAKSWEKVTL 79 (117)
T ss_dssp HHHHHHTTT-TTEEEET--TEEEE--TT-SSSB-STTT-TTTSS--EECCCEG-GGECCCEEE-----TTTT--EEEEEE
T ss_pred CEEEEecCcceEEEEeCCCCCcccCCCCcccccccccccccccceeEEEEECC-CCcEEEEEccccccCCCcceeEEEec
Confidence 79999999999999998779999999999999999999999999999999986 67999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhc
Q psy6028 86 KSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQ 124 (141)
Q Consensus 86 ~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sq 124 (141)
++|+|+++++|++.+.. +|||||..+|++|+|+|++||
T Consensus 80 ~k~~r~a~~~I~~~~~~-~yr~dL~~~a~~R~s~i~~sq 117 (117)
T PF01778_consen 80 SKNSRKALKSIKKQLAK-KYRPDLRKAALRRASAILRSQ 117 (117)
T ss_dssp SSCHHHHHHHHHHHTSS-THHHHHCCHHHHHHHHHCCH-
T ss_pred CccHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998 899999999999999999998
No 4
>PLN00040 Protein MAK16 homolog; Provisional
Probab=100.00 E-value=6.2e-35 Score=236.51 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=105.1
Q ss_pred CCCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028 1 MVSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA 79 (141)
Q Consensus 1 mmS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~ 79 (141)
|||+||+|+||+++|| |++|+. +.+||+||+||||+||++||||||++++||.++ +|+|+|++|+.+++|+|+++
T Consensus 1 m~SddLiW~IIr~~~csF~vK~~--~~~Fcrnp~NltglcsrkycgLANsKyatV~~~--~G~v~L~~Kt~erah~Pak~ 76 (233)
T PLN00040 1 MQHDEVIWQVINHNHCSFKAKID--TGNFCRNKYNVTGLCNRSSCPLANSRYATIREE--DGRFYLYMKTIERAHMPNKL 76 (233)
T ss_pred CCccchhhhhhcCcceeEEEccC--CCcccCCCCcccccccccccccccceeeEEEEc--CCEEEEEEecccccCCcccc
Confidence 9999999999999999 888887 889999999999999999999999999999996 68899999999999999999
Q ss_pred eEEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy6028 80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121 (141)
Q Consensus 80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~ 121 (141)
|.+++|++|+|+++++|.+.+. ++=.-|..-+-.|..+|.
T Consensus 77 w~kv~Lskn~rkalk~I~~~L~--~w~~~~ihk~KqRltkl~ 116 (233)
T PLN00040 77 WEKVKLSRNYEKALEQIDKHLA--YWPKFLVHKNKQRLTKMT 116 (233)
T ss_pred eEEEecCCCHHHHHHHHHHHHh--hCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 355567766766666653
No 5
>KOG3064|consensus
Probab=99.80 E-value=3e-20 Score=152.89 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=101.0
Q ss_pred CCCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028 1 MVSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA 79 (141)
Q Consensus 1 mmS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~ 79 (141)
|||++++|++|.+++| |.+|.. +.+||++.+||||+|++..|+|||+++.+|... +|.++|++|.+.++|-|.++
T Consensus 1 Mq~DeviW~vin~~~CS~k~kte--~~~fCRNeyNvTGLCnR~SCPLANSrYATVre~--~g~~yLymKt~ERaH~P~kl 76 (303)
T KOG3064|consen 1 MQSDEVIWQVINKSFCSYKIKTE--TQTFCRNEYNVTGLCNRSSCPLANSRYATVREE--NGVLYLYMKTIERAHMPRKL 76 (303)
T ss_pred CcchHHHHHHhchhhcceeeecc--ccchhccccccceeeccccCcCccccceeEeec--CCEEEEEEechhhhcCcHHH
Confidence 9999999999998887 999997 889999999999999999999999999999974 78899999999999999999
Q ss_pred eEEEeecCCchHHHHHHHHHhhcCCCCHh-HHHHHHHHHHHH
Q psy6028 80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKE-LTKAALRRASAV 120 (141)
Q Consensus 80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~D-L~~~Al~RaSai 120 (141)
|.+|.|++|+-+++.+|...+- |=|. ++.-.-.|.++|
T Consensus 77 wErikLSkNyekALeQIde~Ll---~Wp~~~~HKcKQRltkl 115 (303)
T KOG3064|consen 77 WERIKLSKNYEKALEQIDEQLL---YWPKYVIHKCKQRLTKL 115 (303)
T ss_pred HHHHhcchhHHHHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence 9999999999999999999887 5554 344455555554
No 6
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=99.69 E-value=2.2e-17 Score=134.46 Aligned_cols=113 Identities=14% Similarity=0.264 Sum_probs=99.0
Q ss_pred CCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCccee
Q psy6028 2 VSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAV 80 (141)
Q Consensus 2 mS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~ 80 (141)
||++.+|+++-.++| |-+|.. +..||++.+|+||+|.+-.|+|+|+++.+|.+ +||.++|++|.+.++|-|++.|
T Consensus 1 msDE~~Wqv~g~~fCS~rik~e--~qnfCRNeyNVTGLC~RqSCPLANSrYATVr~--dngkLyLymKtpERaH~P~klw 76 (303)
T COG5129 1 MSDESLWQVSGENFCSFRIKTE--EQNFCRNEYNVTGLCDRQSCPLANSRYATVRA--DNGKLYLYMKTPERAHVPRKLW 76 (303)
T ss_pred CchhHHHHHccccccceeeecc--hhhhhhcccccceeeccccCcCccCcceEEEe--cCCEEEEEecChhhccCcHHHH
Confidence 899999999999998 999987 88999999999999999999999999999997 5889999999999999999999
Q ss_pred EEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy6028 81 IKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120 (141)
Q Consensus 81 ~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai 120 (141)
.+|.|++|+-.++++|...+- ++-.-...-+-.|.+.|
T Consensus 77 erIkLSkNY~kAL~QIde~Ll--~W~~~~iHkCKQrltkL 114 (303)
T COG5129 77 ERIKLSKNYEKALKQIDESLL--FWDEKVIHKCKQRLTKL 114 (303)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--cccHHHHHHHHHHHHHH
Confidence 999999999999999998876 13223444454555444
No 7
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=28.25 E-value=30 Score=21.96 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy6028 109 LTKAALRRASAVL 121 (141)
Q Consensus 109 L~~~Al~RaSai~ 121 (141)
+.+.|++|||.|-
T Consensus 7 mtrsairrastie 19 (52)
T PF04272_consen 7 MTRSAIRRASTIE 19 (52)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHhhcc
Confidence 6789999999773
No 8
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=26.87 E-value=45 Score=21.13 Aligned_cols=13 Identities=54% Similarity=0.779 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy6028 109 LTKAALRRASAVL 121 (141)
Q Consensus 109 L~~~Al~RaSai~ 121 (141)
+.+.|++|||.|-
T Consensus 7 ~trsairras~ie 19 (52)
T TIGR01294 7 LTRSAIRRASTIE 19 (52)
T ss_pred HHHHHHHHHHhcc
Confidence 6788999999874
No 9
>KOG0996|consensus
Probab=26.38 E-value=57 Score=33.02 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCCCCCcceeEEEeecCCchHHHHHHHHHhhcCCCCH------hHHHHHH
Q psy6028 60 NKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRK------ELTKAAL 114 (141)
Q Consensus 60 ~kgv~l~~Kk~k~~~kPak~~~~~~l~k~~R~~~~~i~~~~~~~~yR~------DL~~~Al 114 (141)
-.||.|+.. -|.|+|..|.-=.|..+|+.+++=+.+--.||| |=..|||
T Consensus 1176 seGV~FSVr------PpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAAL 1230 (1293)
T KOG0996|consen 1176 SEGVMFSVR------PPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1230 (1293)
T ss_pred ccCceEEee------CchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhh
Confidence 368999866 688899998887899999999999988778998 6667775
No 10
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=16.77 E-value=1.3e+02 Score=22.68 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCHhHHHHH--------HHHHHHHHhhcCc
Q psy6028 93 LLKLRKYIVGNKYRKELTKAA--------LRRASAVLQSQKR 126 (141)
Q Consensus 93 ~~~i~~~~~~~~yR~DL~~~A--------l~RaSai~~sqk~ 126 (141)
.+.++..+.-..||-||..-. +.....|.++|+.
T Consensus 19 ~~dLahNL~v~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~ 60 (126)
T PF07028_consen 19 NSDLAHNLRVTCYRSDLGSKVSQKKLLEELKNLSKIQESQRS 60 (126)
T ss_pred HHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778999998765 8888999999874
Done!