Query psy6028
Match_columns 141
No_of_seqs 102 out of 300
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:41:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_b 60S ribosomal protein L 100.0 8.9E-57 3E-61 342.0 0.4 134 1-134 3-140 (147)
2 4a18_O RPL28, ribosomal protei 100.0 8.7E-50 3E-54 299.6 2.9 122 2-133 1-127 (134)
3 1fjk_A Cardiac phospholamban; 28.9 16 0.00056 22.2 0.7 13 108-120 6-18 (52)
4 1ews_A RK-1 defensin, alpha-de 15.7 49 0.0017 18.1 0.8 13 43-55 18-30 (32)
5 1uxc_A FRUR (1-57), fructose r 15.6 53 0.0018 20.3 1.0 24 91-114 33-56 (65)
6 2l8n_A Transcriptional repress 12.8 85 0.0029 19.4 1.4 26 90-115 38-63 (67)
7 2cb3_A Peptidoglycan-recogniti 11.0 2E+02 0.0068 20.9 3.2 35 17-57 72-106 (175)
8 2xz4_A Peptidoglycan-recogniti 11.0 1.7E+02 0.0059 21.3 2.9 35 17-57 75-109 (180)
9 1sk4_A Peptidoglycan recogniti 10.7 1.9E+02 0.0066 20.6 3.0 35 17-57 66-100 (163)
10 1lba_A T7 lysozyme; hydrolase( 9.7 2.5E+02 0.0084 19.6 3.2 35 17-57 44-78 (146)
No 1
>3iz5_b 60S ribosomal protein L28 (L28E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_b
Probab=100.00 E-value=8.9e-57 Score=342.04 Aligned_cols=134 Identities=37% Similarity=0.502 Sum_probs=70.3
Q ss_pred CCCCcceeeeeecCeeeEEeeCCCC---cccccCCCCCCccccccccccccceeEEEEEcC-CCCeEEEEEecCCCCCCC
Q psy6028 1 MVSSHLIWNIVKNNNAYLMKADNIK---KWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA-DNKGFACVTKRATKKYKP 76 (141)
Q Consensus 1 mmS~dL~W~ivr~nnsFlvK~~~~~---~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~-~~kgv~l~~Kk~k~~~kP 76 (141)
|||+||||||||+|||||+|+++++ .+||+||+||+|+|||+||||||+++|||++++ +++||+|++|+.+.+++|
T Consensus 3 ~mS~dL~W~iir~nn~FlvKr~~~~~~~~~FSrep~NL~n~~S~kysGLan~K~v~V~~~~~~~~gv~l~~Kk~~~~~kP 82 (147)
T 3iz5_b 3 TVPEPLIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAP 82 (147)
T ss_dssp ------------------------------------------------------CCSSSCCCCCCCSSSCEECCCCCTTT
T ss_pred CCccccchhhccCcceEEEEecCCCCccceecCCCCCcccccccccccccccceeEEEecccCCCEEEEEEeccccCCCC
Confidence 5899999999999999999998544 889999999999999999999999999999986 789999999999999999
Q ss_pred cceeEEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcCccCCccccc
Q psy6028 77 GKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKKS 134 (141)
Q Consensus 77 ak~~~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk~~~~~k~~~ 134 (141)
+++|++++|++|+|+++++|++++.+++|||||+.+|++|||||++||||+++.++++
T Consensus 83 ak~~~~~~l~k~~Rk~l~~I~~~v~~~~YR~DL~~~Al~RaSai~rsqk~~k~~~~~k 140 (147)
T 3iz5_b 83 AKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQVSKSGAKKK 140 (147)
T ss_dssp TCCCCEECCCSHHHHHHHHHHHHTSCCTHHHHHTTHHHHHHHHHTTC-----------
T ss_pred ccceEEEeecccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHccCCccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999998777663
No 2
>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O
Probab=100.00 E-value=8.7e-50 Score=299.58 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=115.4
Q ss_pred CCCcceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCc----
Q psy6028 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPG---- 77 (141)
Q Consensus 2 mS~dL~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPa---- 77 (141)
|| ||||||||+|||||+|++ |.+||+||+||+|+|||+||||||+|+|||+|++| +| |++|+.+.+++|+
T Consensus 1 MS-dL~W~ivrnnnsFLvKr~--g~~FS~eP~NL~n~~S~kysGLan~KavgV~~~~~-gg--v~~Kk~k~~~kPa~~~~ 74 (134)
T 4a18_O 1 MS-QLVWEIVKNNNAFLVKNN--GVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAK-QA--IATSLRKNQSHKVKKTG 74 (134)
T ss_dssp CH-HHHHHHHTTTCTTEEEET--TEEEECCTTCSSSBCSTTTCTTTSSCCEEEEEEGG-GE--EEEEEECCCCCCSSCCS
T ss_pred Cc-ceeehhhcCcceEEEeeC--CccccCCCCCccceeccccccccccceeEEEEcCC-Cc--EEEecCcccCCCCcccc
Confidence 67 999999999999999998 89999999999999999999999999999999755 45 8999999999999
Q ss_pred ceeEEE-eecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcCccCCcccc
Q psy6028 78 KAVIKQ-EWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKK 133 (141)
Q Consensus 78 k~~~~~-~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk~~~~~k~~ 133 (141)
+++.++ ++++|+|+++++|++++.++ ||+++|++|||||++||+|+.++++.
T Consensus 75 k~~~~~~~~~k~~Rk~~k~I~~~~~~~----DL~~aAl~RaSailrSqk~~~~~~k~ 127 (134)
T 4a18_O 75 TIEAETLTVKGGVQRVAKVIRGRFQSK----GLKQFALKKLVNFHRANVRAQANLKA 127 (134)
T ss_dssp CSSEEEEEESSTHHHHHHHHHHHCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeccccchHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHhcCcccccccc
Confidence 999999 99999999999999999863 99999999999999999999888876
No 3
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=28.88 E-value=16 Score=22.22 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q psy6028 108 ELTKAALRRASAV 120 (141)
Q Consensus 108 DL~~~Al~RaSai 120 (141)
-+++.|++|||.|
T Consensus 6 ~~trsairras~i 18 (52)
T 1fjk_A 6 YLTRSAIRRASTI 18 (52)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc
Confidence 3778999999976
No 4
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=15.71 E-value=49 Score=18.07 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=9.7
Q ss_pred ccccccceeEEEE
Q psy6028 43 YSGLIHSKTIHIQ 55 (141)
Q Consensus 43 ysGLan~kav~V~ 55 (141)
.|||.|+|+|--.
T Consensus 18 scglfnskyiccr 30 (32)
T 1ews_A 18 SCGLFNSKYICCR 30 (32)
T ss_dssp CCSSSSCSEEEEE
T ss_pred ccccccceeEEec
Confidence 4689999988643
No 5
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=15.55 E-value=53 Score=20.28 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHH
Q psy6028 91 RSLLKLRKYIVGNKYRKELTKAAL 114 (141)
Q Consensus 91 ~~~~~i~~~~~~~~yR~DL~~~Al 114 (141)
.+...|...+..-+|+|+....+|
T Consensus 33 et~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 33 KTVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHHHHHHHHHHHTCCCC------
T ss_pred HHHHHHHHHHHHhCCCccHHHHHH
Confidence 445566666666679998765544
No 6
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=12.83 E-value=85 Score=19.41 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhcCCCCHhHHHHHHH
Q psy6028 90 RRSLLKLRKYIVGNKYRKELTKAALR 115 (141)
Q Consensus 90 R~~~~~i~~~~~~~~yR~DL~~~Al~ 115 (141)
..+...|...+..-+|+|+....+|+
T Consensus 38 ~~t~~rV~~~a~~lgY~pn~~a~~l~ 63 (67)
T 2l8n_A 38 QATRNRVEKAAREVGYLPQPMGRNVK 63 (67)
T ss_dssp HHHHHHHHHHHHHHCCCC--------
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHhh
Confidence 34556676666666799997766554
No 7
>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin, innate immunity, immune system; HET: MLD; 2.40A {Drosophila melanogaster} SCOP: d.118.1.1
Probab=11.04 E-value=2e+02 Score=20.87 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=28.7
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|||-+. |..|-.=|.+..+-|+. | .|..+|||+.-
T Consensus 72 flI~~d--G~I~egr~~~~~gaH~~---~-~N~~SIGIe~~ 106 (175)
T 2cb3_A 72 FLVGCD--GNIYEGRGWKTVGAHTL---G-YNRISLGISFI 106 (175)
T ss_dssp EEECTT--SCEEESSCTTBCCSSST---T-TGGGEEEEEES
T ss_pred EEECCC--CEEEECCCCCcccccCC---C-cCCCeEEEEEE
Confidence 999887 77887778888899984 3 38899999985
No 8
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Probab=11.03 E-value=1.7e+02 Score=21.26 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.7
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|||-+. |..|-.=|.+..+-|+. | .|..+|||+.-
T Consensus 75 flI~~d--G~I~egr~~~~~gaH~~---g-~N~~SIGIe~~ 109 (180)
T 2xz4_A 75 FLVGGD--GQIYVGRGWHIQGQHVN---G-YGAISVSIAFI 109 (180)
T ss_dssp EEECTT--SCEEESSCSSBCCCCSS---C-CCCSCEEEEES
T ss_pred EEECCC--CEEEECCCCcccccccC---C-cCCCeEEEEEE
Confidence 999887 77888888888899984 3 38899999985
No 9
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB: 2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Probab=10.66 E-value=1.9e+02 Score=20.59 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=28.9
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|||-+. |..|-.=|.+..+-|+. | .|..+|||+.-
T Consensus 66 flI~~d--G~I~egr~~~~~gaH~~---g-~N~~SIGIe~~ 100 (163)
T 1sk4_A 66 FLVGQD--GGVYEGVGWHIQGSHTY---G-FNDIALGIAFI 100 (163)
T ss_dssp EEECTT--SCEEESSCTTBCCCSST---T-CTTTEEEEEES
T ss_pred EEECCC--CEEEEcCCCCccccccC---C-cCCCeEEEEEe
Confidence 999887 77888888888999984 3 38899999985
No 10
>1lba_A T7 lysozyme; hydrolase(acting on linear amides); 2.20A {Enterobacteria phage T7} SCOP: d.118.1.1 PDB: 1aro_L
Probab=9.74 E-value=2.5e+02 Score=19.57 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=29.6
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|+|-+. |..+--=|.+..+-|.. | .|..+|||+..
T Consensus 44 flI~~d--G~I~q~~~~~~~g~Ha~---~-~N~~SIGIe~~ 78 (146)
T 1lba_A 44 FIIKRD--GTVEAGRDEMAVGSHAK---G-YNHNSIGVCLV 78 (146)
T ss_dssp EEECTT--SCEEECSCTTBCCSSST---T-CGGGEEEEEES
T ss_pred EEECCC--CEEEECCCCcceeCccC---C-cCCCeEEEEEE
Confidence 899877 88888888999999985 3 58899999985
Done!