Query psy6028
Match_columns 141
No_of_seqs 102 out of 300
Neff 5.5
Searched_HMMs 13730
Date Sat Aug 17 00:41:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6028.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6028hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpza1 a.35.1.5 (A:2-58) Puri 49.4 5.7 0.00042 23.2 2.6 27 90-116 29-55 (57)
2 d2hsga1 a.35.1.5 (A:2-58) Gluc 30.1 13 0.00094 21.5 1.9 27 89-115 29-55 (57)
3 d1efaa1 a.35.1.5 (A:2-60) Lac 24.9 16 0.0012 21.2 1.7 26 90-115 31-56 (59)
4 d1smye_ a.143.1.1 (E:) RNA pol 18.9 18 0.0013 23.1 1.0 23 102-126 13-35 (95)
5 d1ewsa_ g.9.1.1 (A:) Alpha-def 15.7 23 0.0017 18.1 0.8 13 43-55 18-30 (32)
6 d2cb3a1 d.118.1.1 (A:174-344) 13.8 69 0.005 21.5 3.2 35 17-57 69-103 (171)
7 d1ohta_ d.118.1.1 (A:) Peptido 12.2 78 0.0057 21.1 3.1 36 16-57 68-103 (174)
8 d1yb0a1 d.118.1.1 (A:1-157) N- 9.6 1.3E+02 0.0092 19.6 3.5 38 17-57 55-92 (157)
9 d1p42a1 d.14.1.7 (A:2-127) UDP 9.6 1.2E+02 0.0085 19.7 3.1 17 51-67 24-40 (120)
10 d1ycka1 d.118.1.1 (A:9-175) Pe 9.2 1.3E+02 0.0092 19.7 3.3 36 17-57 68-103 (167)
No 1
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=49.43 E-value=5.7 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhhcCCCCHhHHHHHHHH
Q psy6028 90 RRSLLKLRKYIVGNKYRKELTKAALRR 116 (141)
Q Consensus 90 R~~~~~i~~~~~~~~yR~DL~~~Al~R 116 (141)
..+-+.|...+..-+|+||....+|++
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 55 (57)
T d1qpza1 29 EETRNAVWAAIKELHYSPSAVARSLKV 55 (57)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHhh
Confidence 455667777777778999998888753
No 2
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=30.06 E-value=13 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=19.5
Q ss_pred chHHHHHHHHHhhcCCCCHhHHHHHHH
Q psy6028 89 PRRSLLKLRKYIVGNKYRKELTKAALR 115 (141)
Q Consensus 89 ~R~~~~~i~~~~~~~~yR~DL~~~Al~ 115 (141)
+..+-+.|...+..-+|+||....+|+
T Consensus 29 s~~tr~rV~~aa~~lgY~pn~~A~~L~ 55 (57)
T d2hsga1 29 KPSTRKKVLETIERLGYRPNAVARGLA 55 (57)
T ss_dssp CHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCcCCCHHHHHhc
Confidence 345566777777777899998766653
No 3
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.92 E-value=16 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhcCCCCHhHHHHHHH
Q psy6028 90 RRSLLKLRKYIVGNKYRKELTKAALR 115 (141)
Q Consensus 90 R~~~~~i~~~~~~~~yR~DL~~~Al~ 115 (141)
..+-+.|...+.+.+|+||....+|+
T Consensus 31 ~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 31 AKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp THHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 35567788888878899998877664
No 4
>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus thermophilus [TaxId: 274]}
Probab=18.89 E-value=18 Score=23.07 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.8
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhcCc
Q psy6028 102 GNKYRKELTKAALRRASAVLQSQKR 126 (141)
Q Consensus 102 ~~~yR~DL~~~Al~RaSai~~sqk~ 126 (141)
...|| |.-..-+||.++|+|+=+
T Consensus 13 DSkYR--LsvVvakRA~QlLr~g~~ 35 (95)
T d1smye_ 13 DSKYR--LTVVVAKRAQQLLRHGFK 35 (95)
T ss_dssp SSHHH--HHHHHHHHHHHHHHTCTT
T ss_pred cccee--eehhhHHHHHHHHHcCCC
Confidence 34688 999999999999999765
No 5
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=15.71 E-value=23 Score=18.07 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=9.7
Q ss_pred ccccccceeEEEE
Q psy6028 43 YSGLIHSKTIHIQ 55 (141)
Q Consensus 43 ysGLan~kav~V~ 55 (141)
.|||.|+|+|--.
T Consensus 18 scglfnskyiccr 30 (32)
T d1ewsa_ 18 SCGLFNSKYICCR 30 (32)
T ss_dssp CCSSSSCSEEEEE
T ss_pred ccccccceeEEec
Confidence 4689999988643
No 6
>d2cb3a1 d.118.1.1 (A:174-344) Peptidoglycan-recognition protein-LE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.78 E-value=69 Score=21.49 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=29.3
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|++.+. |..|---|.+..+-|..-| |..+|||...
T Consensus 69 ~~I~~d--G~I~~gr~~~~~g~H~~~~----N~~sIgI~~v 103 (171)
T d2cb3a1 69 FLVGCD--GNIYEGRGWKTVGAHTLGY----NRISLGISFI 103 (171)
T ss_dssp EEECTT--SCEEESSCTTBCCSSSTTT----GGGEEEEEES
T ss_pred EEECCC--CeEEEcCCccceecccccc----cCCcccEEEE
Confidence 888877 8888888999999998654 8899999875
No 7
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb (Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.18 E-value=78 Score=21.11 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=29.4
Q ss_pred eeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
-|+|-+. |..|---|.|..+-|..- .|..+|||..-
T Consensus 68 h~lI~~d--G~I~~gr~~~~~g~h~~~----~N~~sigI~~i 103 (174)
T d1ohta_ 68 SFGIGGD--GMIYTGRGFNVIGAHAPK----YNDKSVGIVLI 103 (174)
T ss_dssp SEEECTT--SCEEESSCTTBCCSSSTT----TTTSEEEEEES
T ss_pred eEEECCC--CEEEECCCcccccccccc----CCCCeeeEEEE
Confidence 3888877 888888899999999754 47899999976
No 8
>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus anthracis [TaxId: 1392]}
Probab=9.64 E-value=1.3e+02 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=30.4
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|+|.. +...-.-|.|-.+.|.-.++|-.|..+|||+..
T Consensus 55 y~I~d---g~i~q~~p~~~~awHag~~~~~~N~~sIGIE~~ 92 (157)
T d1yb0a1 55 VAVDD---KQAIQGIPWERNAWACGDGNGPGNRESISVEIC 92 (157)
T ss_dssp EEECS---SCEEECSCTTBCCSCSSCSSSHHHHHEEEEEET
T ss_pred EEecc---cceeeeeeccceeeeeecccccCCceEEEEEEe
Confidence 77853 335566788999999988888789999999975
No 9
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=9.57 E-value=1.2e+02 Score=19.74 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.9
Q ss_pred eEEEEEcCCCCeEEEEE
Q psy6028 51 TIHIQPTADNKGFACVT 67 (141)
Q Consensus 51 av~V~~~~~~kgv~l~~ 67 (141)
.+.+.|++.+-||++.-
T Consensus 24 ~v~l~PA~~~~GI~F~r 40 (120)
T d1p42a1 24 KLIIHPEKEGTGIRFFK 40 (120)
T ss_dssp EEEEEECCTTCCEEEEE
T ss_pred EEEEEeCCCCcEEEEEe
Confidence 58888998888999863
No 10
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein, PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.22 E-value=1.3e+02 Score=19.66 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=28.9
Q ss_pred eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEc
Q psy6028 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (141)
Q Consensus 17 FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~ 57 (141)
|||-.. |..|---|.+..+.|.- +-.|..+|||...
T Consensus 68 ~lI~~d--G~I~~gr~~~~~~~ha~---~~~N~~sigI~~~ 103 (167)
T d1ycka1 68 FLIGED--GLVYEGRGWNFTGAHSG---HLWNPMSIGISFM 103 (167)
T ss_dssp EEECTT--SCEEESSTTTBCCSSSC---TTTGGGEEEEEES
T ss_pred EEECCC--CEEEEeeCccccccccC---CCCCCCeEEEEEE
Confidence 888766 78888889999888875 2358999999875
Done!