Your job contains 1 sequence.
>psy6028
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN
KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV
LQSQKRAQIPAKKSNKKKADN
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6028
(141 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035422 - symbol:RpL28 "Ribosomal protein L28" spe... 380 4.0e-35 1
UNIPROTKB|Q3T0L7 - symbol:RPL28 "60S ribosomal protein L2... 270 1.8e-23 1
UNIPROTKB|E2R0A6 - symbol:RPL28 "Uncharacterized protein"... 270 1.8e-23 1
UNIPROTKB|P46779 - symbol:RPL28 "60S ribosomal protein L2... 270 1.8e-23 1
MGI|MGI:101839 - symbol:Rpl28 "ribosomal protein L28" spe... 268 2.9e-23 1
RGD|2318912 - symbol:LOC100362069 "ribosomal protein L28-... 268 2.9e-23 1
UNIPROTKB|Q642E2 - symbol:Rpl28 "Ribosomal protein L28" s... 268 2.9e-23 1
ZFIN|ZDB-GENE-040930-10 - symbol:rpl28 "ribosomal protein... 262 1.3e-22 1
RGD|1565183 - symbol:RGD1565183 "similar to ribosomal pro... 254 9.0e-22 1
RGD|621193 - symbol:Rpl28 "ribosomal protein L28" species... 253 1.1e-21 1
RGD|1585117 - symbol:LOC690096 "similar to ribosomal prot... 232 1.9e-19 1
TAIR|locus:2052010 - symbol:AT2G19730 species:3702 "Arabi... 223 1.7e-18 1
UNIPROTKB|H0YKD8 - symbol:RPL28 "60S ribosomal protein L2... 213 2.0e-17 1
TAIR|locus:2118289 - symbol:AT4G29410 species:3702 "Arabi... 212 2.5e-17 1
ASPGD|ASPL0000004497 - symbol:AN6500 species:162425 "Emer... 197 9.8e-16 1
WB|WBGene00004442 - symbol:rpl-28 species:6239 "Caenorhab... 168 1.2e-12 1
UNIPROTKB|G5E9L2 - symbol:RPL28 "Ribosomal protein L28, i... 163 3.9e-12 1
UNIPROTKB|H0YMF4 - symbol:RPL28 "60S ribosomal protein L2... 163 3.9e-12 1
UNIPROTKB|C9JB50 - symbol:RPL28 "Ribosomal protein L28, i... 162 5.0e-12 1
UNIPROTKB|I3LSZ6 - symbol:RPL28 "Uncharacterized protein"... 160 8.2e-12 1
POMBASE|SPAC1687.06c - symbol:rpl44 "60S ribosomal protei... 157 1.7e-11 1
UNIPROTKB|H0YLP6 - symbol:RPL28 "60S ribosomal protein L2... 150 9.4e-11 1
DICTYBASE|DDB_G0282379 - symbol:rpl28 "60S ribosomal prot... 146 2.5e-10 1
UNIPROTKB|D4A8B6 - symbol:D4A8B6 "Uncharacterized protein... 144 4.1e-10 1
RGD|2321738 - symbol:LOC100360619 "ribosomal protein L28-... 97 3.9e-05 1
>FB|FBgn0035422 [details] [associations]
symbol:RpL28 "Ribosomal protein L28" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=IMP] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR002672 EMBL:AE014296 GO:GO:0051298 GO:GO:0022008
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 EMBL:AY071444 RefSeq:NP_001163336.1
RefSeq:NP_001163337.1 RefSeq:NP_647791.2 RefSeq:NP_728839.1
RefSeq:NP_728840.1 RefSeq:NP_728841.2 UniGene:Dm.14669
ProteinModelPortal:Q9VZS5 SMR:Q9VZS5 IntAct:Q9VZS5 MINT:MINT-786006
STRING:Q9VZS5 PaxDb:Q9VZS5 PRIDE:Q9VZS5 EnsemblMetazoa:FBtr0073095
EnsemblMetazoa:FBtr0073097 EnsemblMetazoa:FBtr0073098
EnsemblMetazoa:FBtr0302300 EnsemblMetazoa:FBtr0302301
EnsemblMetazoa:FBtr0306567 GeneID:38397 KEGG:dme:Dmel_CG12740
FlyBase:FBgn0035422 InParanoid:Q9VZS5 OrthoDB:EOG4PZGQ4
PhylomeDB:Q9VZS5 ChiTaRS:RPL28 GenomeRNAi:38397 NextBio:808415
GermOnline:CG12740 Uniprot:Q9VZS5
Length = 144
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 70/136 (51%), Positives = 101/136 (74%)
Query: 3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
SSHL W I++NNNA+L+K ++KK FS EP NL +++S++YSG++H KT+ + P AD KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 63 FACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQ 122
F V K+ +P K ++ ++K+GPRRSL KL+ ++G+KYRK+LT+AALRRASAVL+
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 123 SQKRAQIPAKKSNKKK 138
SQK A + KK+ K
Sbjct: 124 SQKPAPVKGKKAEFAK 139
>UNIPROTKB|Q3T0L7 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 EMBL:BC102344
IPI:IPI00707537 RefSeq:NP_001030580.1 UniGene:Bt.28844
STRING:Q3T0L7 PRIDE:Q3T0L7 Ensembl:ENSBTAT00000031754 GeneID:618702
KEGG:bta:618702 CTD:6158 GeneTree:ENSGT00390000008732
HOVERGEN:HBG000701 InParanoid:Q3T0L7 OrthoDB:EOG4W9J5C
NextBio:20901322 Uniprot:Q3T0L7
Length = 137
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 56/138 (40%), Positives = 85/138 (61%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K S K+
Sbjct: 119 RSQKPVMVKRKPSRPTKS 136
>UNIPROTKB|E2R0A6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 GeneTree:ENSGT00390000008732
EMBL:AAEX03000731 RefSeq:XP_003432751.1 RefSeq:XP_533581.3
Ensembl:ENSCAFT00000004065 GeneID:476378 KEGG:cfa:476378
NextBio:20852046 Uniprot:E2R0A6
Length = 137
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/138 (39%), Positives = 86/138 (62%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVLKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVMVKRKRARPTKS 136
>UNIPROTKB|P46779 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR002672 Reactome:REACT_116125
GO:GO:0000184 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
EMBL:CH471135 EMBL:AC020922 GO:GO:0006415 GO:GO:0006414
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:U14969 EMBL:CR457024 EMBL:AK311760 EMBL:AK293736
EMBL:BC010173 EMBL:BC010182 EMBL:BC011582 IPI:IPI00182533
IPI:IPI00910727 PIR:S55915 RefSeq:NP_000982.2 RefSeq:NP_001129606.1
RefSeq:NP_001129607.1 UniGene:Hs.652114 ProteinModelPortal:P46779
SMR:P46779 IntAct:P46779 MINT:MINT-5004261 STRING:P46779
PhosphoSite:P46779 DMDM:22002069 PaxDb:P46779 PeptideAtlas:P46779
PRIDE:P46779 DNASU:6158 Ensembl:ENST00000344063
Ensembl:ENST00000559463 Ensembl:ENST00000560583 GeneID:6158
KEGG:hsa:6158 UCSC:uc002qkv.3 GeneCards:GC19P055897 HGNC:HGNC:10330
HPA:HPA050459 MIM:603638 neXtProt:NX_P46779 PharmGKB:PA34710
InParanoid:P46779 PhylomeDB:P46779 GenomeRNAi:6158 NextBio:23915
PMAP-CutDB:P46779 ArrayExpress:P46779 Bgee:P46779 CleanEx:HS_RPL28
Genevestigator:P46779 GermOnline:ENSG00000108107 Uniprot:P46779
Length = 137
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/138 (39%), Positives = 86/138 (62%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVMVKRKRTRPTKS 136
>MGI|MGI:101839 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR002672
MGI:MGI:101839 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:X74856 EMBL:AK018714 EMBL:AK076133 EMBL:BC024395
IPI:IPI00222547 PIR:I48738 RefSeq:NP_033107.1 UniGene:Mm.379002
ProteinModelPortal:P41105 SMR:P41105 DIP:DIP-59974N IntAct:P41105
STRING:P41105 PhosphoSite:P41105 PaxDb:P41105 PRIDE:P41105
Ensembl:ENSMUST00000032597 Ensembl:ENSMUST00000078432 GeneID:19943
KEGG:mmu:19943 InParanoid:P41105 NextBio:297461 Bgee:P41105
CleanEx:MM_RPL28 Genevestigator:P41105
GermOnline:ENSMUSG00000030432 GermOnline:ENSMUSG00000058603
Uniprot:P41105
Length = 137
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/138 (39%), Positives = 86/138 (62%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKS 136
>RGD|2318912 [details] [associations]
symbol:LOC100362069 "ribosomal protein L28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
RGD:2318912 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10544 OMA:QNTPAKL GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00780624 RefSeq:XP_002725599.1
RefSeq:XP_002728752.1 Ensembl:ENSRNOT00000057158 GeneID:100362069
KEGG:rno:100362069 UCSC:RGD:2318912 Uniprot:D3ZJD3
Length = 137
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/138 (39%), Positives = 87/138 (63%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKAGNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L+ AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLSMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKS 136
>UNIPROTKB|Q642E2 [details] [associations]
symbol:Rpl28 "Ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 RGD:621193
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH474075
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 HOVERGEN:HBG000701 UniGene:Rn.36614
EMBL:BC081800 IPI:IPI00471679 RefSeq:NP_073188.2 SMR:Q642E2
STRING:Q642E2 Ensembl:ENSRNOT00000058943 GeneID:64638
KEGG:rno:64638 InParanoid:Q642E2 NextBio:613620
Genevestigator:Q642E2 Uniprot:Q642E2
Length = 137
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/138 (39%), Positives = 86/138 (62%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKS 136
>ZFIN|ZDB-GENE-040930-10 [details] [associations]
symbol:rpl28 "ribosomal protein L28" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0009790 "embryo development" evidence=IMP] InterPro:IPR002672
ZFIN:ZDB-GENE-040930-10 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0003735 KO:K02903 PANTHER:PTHR10544 CTD:6158
HOVERGEN:HBG000701 EMBL:BC055584 EMBL:AY648842 IPI:IPI00486130
RefSeq:NP_957355.1 UniGene:Dr.76048 STRING:Q7SXI9 GeneID:394036
KEGG:dre:394036 InParanoid:Q7SXI9 NextBio:20814998 Uniprot:Q7SXI9
Length = 138
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 56/139 (40%), Positives = 84/139 (60%)
Query: 1 MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
M S HL W +++N++++L+K + K+ +S EP NL +F+++GLIH KTI I+P AD
Sbjct: 1 MASPHLQWMVIRNSSSFLIKRN--KQTYSTEPNNLKARNAFRFNGLIHRKTIGIEPAADG 58
Query: 61 KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120
KG V K+ + + KP + K R +L +R I NKYR++L AALRR SA+
Sbjct: 59 KGVVVVLKKRSGQRKPATSYGKITINKNSRATLASVRNIIRKNKYRRDLRMAALRRVSAI 118
Query: 121 LQSQKRAQIPAKKSNKKKA 139
L SQK + K+S K+
Sbjct: 119 LSSQKPVVVRKKRSRAPKS 137
>RGD|1565183 [details] [associations]
symbol:RGD1565183 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1565183 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 OrthoDB:EOG4W9J5C IPI:IPI00215480
RefSeq:XP_001057767.1 RefSeq:XP_212890.1 PRIDE:D3ZG08
Ensembl:ENSRNOT00000049254 GeneID:293846 KEGG:rno:293846 CTD:293846
OMA:THAKRYS NextBio:637123 Uniprot:D3ZG08
Length = 137
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 53/138 (38%), Positives = 84/138 (60%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF Y+GLIH KT+ ++PTAD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPKNLKARNSFGYNGLIHRKTVGVEPTADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R+ I NKY +L +RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPAISYVRTTINKNARATLSSIRQMIRKNKYHPDLRMVTIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKS 136
>RGD|621193 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR002672 RGD:621193 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
PANTHER:PTHR10544 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C EMBL:X52619
IPI:IPI00555189 PIR:S13072 UniGene:Rn.36614 IntAct:P17702
STRING:P17702 PRIDE:P17702 UCSC:RGD:621193 InParanoid:P17702
ArrayExpress:P17702 Genevestigator:P17702
GermOnline:ENSRNOG00000017127 Uniprot:P17702
Length = 137
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 53/138 (38%), Positives = 84/138 (60%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++ D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G V KR + + KP + ++ R +L +R I NKYR +L AA+RRASA+L
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 122 QSQKRAQIPAKKSNKKKA 139
+SQK + K++ K+
Sbjct: 119 RSQKPVVVKRKRTRPTKS 136
>RGD|1585117 [details] [associations]
symbol:LOC690096 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1585117 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00958507 Ensembl:ENSRNOT00000012255
UCSC:RGD:1585117 Uniprot:D3ZEI0
Length = 145
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 53/143 (37%), Positives = 86/143 (60%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL S +Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSLRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEW-KSGPR-----RSLLKLRKYIVG-NKYRKELTKAAL 114
G V KR + + KP + ++ K+ P R +++ KY NKYR +L AA+
Sbjct: 59 GVVVVMKRRSGQRKPATSYVRTTINKNAPATLSSIRQMIRKNKYRQKTNKYRPDLRMAAI 118
Query: 115 RRASAVLQSQKRAQIPAKKSNKK 137
ASA+LQSQK + K++ ++
Sbjct: 119 HMASAILQSQKPMVVKRKQTRQE 141
>TAIR|locus:2052010 [details] [associations]
symbol:AT2G19730 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR002672 EnsemblPlants:AT2G19730.2 GO:GO:0005886
GO:GO:0009506 GO:GO:0005618 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003735 EMBL:AC005169
GO:GO:0022625 EMBL:AY050769 EMBL:AY079378 IPI:IPI00516217
PIR:D84580 RefSeq:NP_001031374.1 RefSeq:NP_001077920.1
RefSeq:NP_179563.1 UniGene:At.12891 ProteinModelPortal:O82204
SMR:O82204 STRING:O82204 PaxDb:O82204 PRIDE:O82204 ProMEX:O82204
EnsemblPlants:AT2G19730.1 EnsemblPlants:AT2G19730.3 GeneID:816492
KEGG:ath:AT2G19730 TAIR:At2g19730 eggNOG:NOG148062
HOGENOM:HOG000200513 InParanoid:O82204 KO:K02903 OMA:KPFSTEP
PhylomeDB:O82204 ProtClustDB:CLSN2683192 Genevestigator:O82204
GermOnline:AT2G19730 PANTHER:PTHR10544 Uniprot:O82204
Length = 143
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 56/143 (39%), Positives = 82/143 (57%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVKNNN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAAD 63
Query: 59 DNKGFACVTKRATKKYKP----GKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAAL 114
++ T + K+ KP K+++K+E+ PR S + +V N YR +L KAAL
Sbjct: 64 KDQAVVLATTKTKKQNKPKLSVNKSILKKEF---PRMSKA-VANQVVDNYYRPDLKKAAL 119
Query: 115 RRASAVLQSQKRAQIPAKKSNKK 137
R SA+ + + A+ AK+ N++
Sbjct: 120 ARLSAISKGLRVAKSGAKQRNRQ 142
>UNIPROTKB|H0YKD8 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YKD8 SMR:H0YKD8
Ensembl:ENST00000560055 Bgee:H0YKD8 Uniprot:H0YKD8
Length = 170
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 50/129 (38%), Positives = 75/129 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALR--RASA 119
G V KR + + KP + ++ R +L +R I NKYR +L A R R A
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMLAGRVGRQQA 118
Query: 120 V--LQSQKR 126
V L+ Q R
Sbjct: 119 VSSLEHQPR 127
>TAIR|locus:2118289 [details] [associations]
symbol:AT4G29410 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR002672
EnsemblPlants:AT4G29410.1 GO:GO:0005886 GO:GO:0009506 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161574 GO:GO:0006412 GO:GO:0003735
EMBL:AL096692 GO:GO:0022625 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 ProtClustDB:CLSN2683192 PANTHER:PTHR10544 EMBL:AY072328
EMBL:BT000047 EMBL:AY088304 IPI:IPI00539771 PIR:B85343
RefSeq:NP_001078470.1 RefSeq:NP_194670.1 UniGene:At.19931
ProteinModelPortal:Q9M0E2 SMR:Q9M0E2 STRING:Q9M0E2 PaxDb:Q9M0E2
PRIDE:Q9M0E2 EnsemblPlants:AT4G29410.2 GeneID:829062
KEGG:ath:AT4G29410 TAIR:At4g29410 InParanoid:Q9M0E2 OMA:QNTPAKL
PhylomeDB:Q9M0E2 Genevestigator:Q9M0E2 GermOnline:AT4G29410
Uniprot:Q9M0E2
Length = 143
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVK NN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAG 63
Query: 59 DNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRAS 118
++G T + ++ KP +V K K R + +V N YR +L KAAL R S
Sbjct: 64 KDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLS 123
Query: 119 AVLQSQKRAQIPAKKSNKK 137
A+ + + A+ K+ N++
Sbjct: 124 AISKGLRVAKSGPKRRNRQ 142
>ASPGD|ASPL0000004497 [details] [associations]
symbol:AN6500 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 GO:GO:0006412 GO:GO:0005840 EMBL:BN001301
GO:GO:0003735 HOGENOM:HOG000200513 OMA:KPFSTEP PANTHER:PTHR10544
EnsemblFungi:CADANIAT00007267 Uniprot:C8V0H7
Length = 157
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 51/144 (35%), Positives = 81/144 (56%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VSS L+W + +N NAYL+K + FS++P N+ N SFKY+G ++K I +Q T +N
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFKYAGYSNTKAIGVQAT-EN 66
Query: 61 KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVG----NKYRKELTKAALRR 116
G +TK+ +P K++ + GP S K+ K + N YR +L + A+ R
Sbjct: 67 GGVVTITKKPGTSQQPAKSLAVVTY--GPGASNRKIYKGVADRTAKNGYRADLRQEAVSR 124
Query: 117 ASAVLQSQK-RAQIPAKKSNKKKA 139
SA+ +SQK + + PA+K +A
Sbjct: 125 VSAIRRSQKAKKETPARKPRGAQA 148
>WB|WBGene00004442 [details] [associations]
symbol:rpl-28 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR002672 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:Z75547 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732 PIR:T24181
RefSeq:NP_506180.1 ProteinModelPortal:Q21930 SMR:Q21930
DIP:DIP-24374N IntAct:Q21930 MINT:MINT-1095802 STRING:Q21930
PaxDb:Q21930 EnsemblMetazoa:R11D1.8.1 EnsemblMetazoa:R11D1.8.2
EnsemblMetazoa:R11D1.8.3 GeneID:179739 KEGG:cel:CELE_R11D1.8
UCSC:R11D1.8.5 CTD:179739 WormBase:R11D1.8 InParanoid:Q21930
OMA:WQVIRNN NextBio:906662 Uniprot:Q21930
Length = 126
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 47/129 (36%), Positives = 69/129 (53%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W +++NN+A+L I K FS E NL + S KYSGL + I + A K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA--K 58
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
G TK +K +P KAV P S+ +L K NK+ K A RRA+A++
Sbjct: 59 GVVVSTKN--EKGRPAKAVTTSTLSKTPVASVRRLAKNAGFNKFNK----LAQRRAAAIV 112
Query: 122 QSQ-KRAQI 129
+SQ K+A++
Sbjct: 113 RSQVKKAKV 121
>UNIPROTKB|G5E9L2 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_b"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 GeneID:6158 KEGG:hsa:6158 HGNC:HGNC:10330
GenomeRNAi:6158 NextBio:23915 RefSeq:NP_001129608.1
ProteinModelPortal:G5E9L2 SMR:G5E9L2 PRIDE:G5E9L2
Ensembl:ENST00000431533 ArrayExpress:G5E9L2 Bgee:G5E9L2
Uniprot:G5E9L2
Length = 87
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKY 74
G V KR + ++
Sbjct: 59 GVVVVIKRRSGEF 71
>UNIPROTKB|H0YMF4 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YMF4 SMR:H0YMF4
Ensembl:ENST00000558752 Bgee:H0YMF4 Uniprot:H0YMF4
Length = 112
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKYKPGKAVIK-QEWKSG 88
G V KR + + K G W+ G
Sbjct: 59 GVVVVIKRRSGR-KSGNCHRGGHPWRQG 85
>UNIPROTKB|C9JB50 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 DNASU:6158 GeneID:6158 KEGG:hsa:6158
HGNC:HGNC:10330 PharmGKB:PA34710 GenomeRNAi:6158 NextBio:23915
IPI:IPI00914543 RefSeq:NP_001129609.1 SMR:C9JB50 STRING:C9JB50
Ensembl:ENST00000428193 UCSC:uc010yfy.1 HOGENOM:HOG000186171
Uniprot:C9JB50
Length = 69
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATK 72
G V KR ++
Sbjct: 59 GVVVVIKRRSE 69
>UNIPROTKB|I3LSZ6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
GeneTree:ENSGT00390000008732 Ensembl:ENSSSCT00000022565 OMA:FCYNGLI
Uniprot:I3LSZ6
Length = 122
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 44/121 (36%), Positives = 71/121 (58%)
Query: 5 HLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFA 64
HL W +V+ +++L+K + K+ ++ EP NL SF Y+GLIH T+ ++P AD+K
Sbjct: 4 HLQWMVVQICSSFLIKKN--KQTYNMEPNNLKARYSFCYNGLIHHTTVGVEP-ADDKRDR 60
Query: 65 CVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQ 124
+ K+ + + KP K + +L +R+ I+ NKYR +L AA+RRA +L SQ
Sbjct: 61 GMMKQGSGQRKPXK-----------KATLSSIRRKILKNKYRLDLHTAAIRRAITIL-SQ 108
Query: 125 K 125
K
Sbjct: 109 K 109
>POMBASE|SPAC1687.06c [details] [associations]
symbol:rpl44 "60S ribosomal protein L28/L44
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR002672 PomBase:SPAC1687.06c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022625
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 EMBL:AB016007 PIR:T37749 PIR:T43380
RefSeq:NP_593124.1 IntAct:O14069 STRING:O14069
EnsemblFungi:SPAC1687.06c.1 GeneID:2542782 KEGG:spo:SPAC1687.06c
OrthoDB:EOG4ZGSP7 NextBio:20803826 Uniprot:O14069
Length = 134
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 40/127 (31%), Positives = 66/127 (51%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VS+ LIW ++++NN +L+K F++EP N+ + ++SGL + K + +Q +
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSP- 61
Query: 61 KGFACVTKRATKK-YKPGKAVIKQEWKSGPRRSLLKLRKYIVGNK-YRKELTKAALRRAS 118
+G +TK K KP K K + R K +G YR +L K ++ RAS
Sbjct: 62 RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARAS 121
Query: 119 AVLQSQK 125
A+L SQ+
Sbjct: 122 AILSSQR 128
>UNIPROTKB|H0YLP6 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YLP6 SMR:H0YLP6
Ensembl:ENST00000558131 Bgee:H0YLP6 Uniprot:H0YLP6
Length = 89
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 G 62
G
Sbjct: 59 G 59
>DICTYBASE|DDB_G0282379 [details] [associations]
symbol:rpl28 "60S ribosomal protein L28"
species:44689 "Dictyostelium discoideum" [GO:0005615 "extracellular
space" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002672
dictyBase:DDB_G0282379 GO:GO:0005615 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 KO:K02903 PANTHER:PTHR10544 EMBL:AY007804
RefSeq:XP_640178.1 STRING:Q9GS21 PRIDE:Q9GS21
EnsemblProtists:DDB0214936 GeneID:8623717 KEGG:ddi:DDB_G0282379
OMA:EPGNLRN Uniprot:Q9GS21
Length = 132
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 46/138 (33%), Positives = 66/138 (47%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W+I+K NNA+L + + S EPGNL N S KYSGL TI + A N
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGLT--LSAEPGNLRNKNSLKYSGLARRTTIDV--AAVN- 55
Query: 62 GFACVTKRATKKYK-PGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAAL---RRA 117
G V+ + KK P ++ + + R + K + +Y EL AAL R
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRV 114
Query: 118 SAVLQSQKRAQIPAKKSN 135
+ L+S K+A K N
Sbjct: 115 QSALRSAKKAAARKAKKN 132
>UNIPROTKB|D4A8B6 [details] [associations]
symbol:D4A8B6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
IPI:IPI00781093 Ensembl:ENSRNOT00000061244 Uniprot:D4A8B6
Length = 119
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 41/121 (33%), Positives = 63/121 (52%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N ++ L+K N + ++ EP NL +F YSGLIH KT+ +P AD +
Sbjct: 1 MSAHLQWMVVRNCSSVLIKR-NEQTTYTMEPNNLRARNAFSYSGLIHHKTVGAEPVADGR 59
Query: 62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVG-NKYRKELTKAALRRASAV 120
+ + KP + ++ K +R I NK R +L AA R+ASA
Sbjct: 60 RGRGGYETQIRSAKPATSYVRTTIKK-ECVGYSGIRHVIWHQNKCRPDLHMAATRKASAF 118
Query: 121 L 121
L
Sbjct: 119 L 119
>RGD|2321738 [details] [associations]
symbol:LOC100360619 "ribosomal protein L28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
RGD:2321738 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10544 OrthoDB:EOG4W9J5C EMBL:AY387093 IPI:IPI00454231
RefSeq:NP_001257317.1 STRING:Q6TUD7 Ensembl:ENSRNOT00000035353
GeneID:100360619 KEGG:rno:100360619 Genevestigator:Q6TUD7
Uniprot:Q6TUD7
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 90 RRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKKSNKKKA 139
R +L +R+ I NKYR +L AA+RRASA+L +QK + K++ K+
Sbjct: 52 RATLSSIRQMIQKNKYRPDLRMAAIRRASAILLNQKPVVVKRKRTRPTKS 101
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 141 141 0.00091 102 3 11 23 0.47 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 591 (63 KB)
Total size of DFA: 144 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 15.80u 0.07s 15.87t Elapsed: 00:00:03
Total cpu time: 15.80u 0.07s 15.87t Elapsed: 00:00:04
Start: Thu Aug 15 16:05:38 2013 End: Thu Aug 15 16:05:42 2013