RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6028
         (141 letters)



>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
          (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 262

 Score = 26.8 bits (59), Expect = 1.0
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 14 NNAYLMKADNIKKWFSKEPGNLP 36
          N AY     +I+K   K   ++P
Sbjct: 13 NGAYYDVCSDIEKLQGKLSDDIP 35


>d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium
           subunit QorM {Pseudomonas putida [TaxId: 303]}
          Length = 109

 Score = 24.6 bits (53), Expect = 3.7
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 103 NKYRKELTKAALRRASAVLQSQKRA 127
              R  L KA  +R   +L++ + A
Sbjct: 85  RDLRLSLAKAITQR--VILKAAQGA 107


>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 243

 Score = 24.8 bits (54), Expect = 3.8
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 14 NNAYLMKADNIKKWFSKE 31
          N  Y+ +  N++     E
Sbjct: 13 NACYMEEMQNVELVEGDE 30


>d1xb4a2 a.4.5.54 (A:126-199) Vacuolar protein sorting-associated
           protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 74

 Score = 23.5 bits (51), Expect = 5.0
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 114 LRRASAVLQSQKRAQI 129
           L      L  + RA +
Sbjct: 48  LYYCLKPLCDRNRATM 63


>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 14 NNAYLMKADNIKKWFSKEPGNLPN--LASFKYSGLIH-SKT---IHIQPTADNKGFACVT 67
          N  Y+ +  N++     +     N    +F  +G +   +T     +   + N G     
Sbjct: 13 NACYMEEMKNVEMVEGDQGQMCINMEWGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYE 72

Query: 68 KRATKKY 74
          K  +  Y
Sbjct: 73 KMISGMY 79


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
          mansoni) [TaxId: 6183]}
          Length = 237

 Score = 24.4 bits (53), Expect = 6.3
 Identities = 3/14 (21%), Positives = 7/14 (50%)

Query: 14 NNAYLMKADNIKKW 27
          N AY+  +  ++  
Sbjct: 13 NVAYIEDSSKVELM 26


>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 14 NNAYLMKADNIKKWFSKE 31
          N  Y+ +  +I      E
Sbjct: 13 NACYMEELRHIDLVEGDE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,192
Number of extensions: 19996
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 12
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)