BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6030
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28
PE=2 SV=1
Length = 144
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
SSHL W I++NNNA+L+K ++KK FS EP NL +++S++YSG++H KT+ + P AD KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 63 FACVTKR 69
F V K+
Sbjct: 64 FTAVLKK 70
>sp|Q962T2|RL28_SPOFR 60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2
SV=1
Length = 139
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+SSHL W I++NNNA+L+K NIKK FSKEP N+ NL S++Y+GLI K + + D K
Sbjct: 1 MSSHLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRK 60
Query: 62 GFACVTK--RATKKPTAD 77
GF V K +AT KP +
Sbjct: 61 GFTVVYKKAKATNKPAKN 78
>sp|P41105|RL28_MOUSE 60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2
Length = 137
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKP 74
G V KR + +KP
Sbjct: 59 GVVVVMKRRSGQRKP 73
>sp|P46779|RL28_HUMAN 60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3
Length = 137
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKP 74
G V KR + +KP
Sbjct: 59 GVVVVIKRRSGQRKP 73
>sp|Q3T0L7|RL28_BOVIN 60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3
Length = 137
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKP 74
G V KR + +KP
Sbjct: 59 GVVVVMKRRSGQRKP 73
>sp|P17702|RL28_RAT 60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4
Length = 137
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++ D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58
Query: 62 GFACVTKRAT--KKP 74
G V KR + +KP
Sbjct: 59 GVVVVMKRRSGQRKP 73
>sp|Q9M0E2|RL282_ARATH 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C
PE=2 SV=1
Length = 143
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVK NN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAG 63
Query: 59 DNKGFACVTKRATKKPTADNKGFACVTKRATKKTLS 94
++G T K NK V K KK S
Sbjct: 64 KDQGVVL----GTTKTKRQNKPKLSVNKSILKKEFS 95
>sp|O82204|RL281_ARATH 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A
PE=1 SV=1
Length = 143
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVKNNN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ A
Sbjct: 4 VPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ--A 61
Query: 59 DNKGFACVTKRATKKPTADNKGFACVTKRATKK 91
+K A V AT K NK V K KK
Sbjct: 62 ADKDQAVVL--ATTKTKKQNKPKLSVNKSILKK 92
>sp|Q9GS21|RL28_DICDI 60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28
PE=2 SV=1
Length = 132
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W+I+K NNA+L + + S EPGNL N S KYSGL TI + A
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGLT--LSAEPGNLRNKNSLKYSGLARRTTIDV---AAVN 55
Query: 62 GFACVTKRATKK---PTADNK--GFACVTKRATKK 91
G V+ + KK P K F+ V R T +
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTAR 90
>sp|Q21930|RL28_CAEEL 60S ribosomal protein L28 OS=Caenorhabditis elegans GN=rpl-28
PE=1 SV=3
Length = 126
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W +++NN+A+L I K FS E NL + S KYSGL + I + A K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA--K 58
Query: 62 GFACVTKRATKKP 74
G TK +P
Sbjct: 59 GVVVSTKNEKGRP 71
>sp|O14069|RL28E_SCHPO Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpl28e PE=1 SV=1
Length = 134
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VS+ LIW ++++NN +L+K F++EP N+ + ++SGL + K + +Q +
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSP- 61
Query: 61 KGFACVTKRATKKPTADNKGF-----ACVTKRATKKTLSGHVDIGSARMD 105
+G +TK K K F A + R T K+++G + R D
Sbjct: 62 RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDD 111
>sp|P0DJ20|RL28_TETTH 60S ribosomal protein L28 OS=Tetrahymena thermophila GN=RPL28
PE=1 SV=1
Length = 134
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 4 SHLIWNIVKNNNAYLMKADNIKKWFSKEP 32
S L+W IVKNNNA+L+K + + F+ +P
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDP 28
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo
sapiens GN=USP9Y PE=1 SV=2
Length = 2555
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 681 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 731
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus
musculus GN=Usp9x PE=1 SV=2
Length = 2559
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 680 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 730
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo
sapiens GN=USP9X PE=1 SV=3
Length = 2570
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 IWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57
IW + N YL + KW+SK G+ P+L S + + P+
Sbjct: 680 IWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPS 730
>sp|B4KFW6|FICD_DROMO Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila mojavensis GN=GI11595 PE=3 SV=1
Length = 502
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
A LM+ + W + E N +L Y+ L H K +HI P D G
Sbjct: 344 AILMQ--RFEHWLNSEQSN--SLHPVNYAALAHYKLVHIHPFVDGNG 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,248,425
Number of Sequences: 539616
Number of extensions: 1633325
Number of successful extensions: 3122
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3097
Number of HSP's gapped (non-prelim): 19
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)