Query psy6030
Match_columns 118
No_of_seqs 103 out of 249
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:45:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_b 60S ribosomal protein L 100.0 1.7E-47 5.9E-52 283.3 -0.1 111 1-114 3-123 (147)
2 4a18_O RPL28, ribosomal protei 100.0 1.8E-40 6E-45 242.7 3.3 103 2-114 1-111 (134)
3 1uxc_A FRUR (1-57), fructose r 19.1 39 0.0013 20.4 1.0 25 87-111 32-56 (65)
4 2l8n_A Transcriptional repress 16.4 51 0.0017 19.9 1.1 26 87-112 38-63 (67)
5 2cb3_A Peptidoglycan-recogniti 12.8 1.7E+02 0.0057 20.7 3.2 36 16-57 71-106 (175)
6 2xz4_A Peptidoglycan-recogniti 12.8 1.5E+02 0.0051 21.0 2.9 36 16-57 74-109 (180)
7 1sk4_A Peptidoglycan recogniti 12.5 1.6E+02 0.0055 20.4 3.0 36 16-57 65-100 (163)
8 2f2l_X Peptidoglycan recogniti 11.4 1.7E+02 0.0058 20.5 2.8 36 16-57 67-102 (167)
9 1yb0_A Prophage lambdaba02, N- 11.4 2.3E+02 0.0077 19.4 3.5 39 16-57 54-92 (159)
10 2zc2_A DNAD-like replication p 11.3 2E+02 0.007 17.2 2.9 28 88-115 21-48 (78)
No 1
>3iz5_b 60S ribosomal protein L28 (L28E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_b
Probab=100.00 E-value=1.7e-47 Score=283.25 Aligned_cols=111 Identities=33% Similarity=0.429 Sum_probs=55.8
Q ss_pred CCCcceeeeeeecCceeeeeeCCCC---cccccCCCCCCCcccccccccccceeeEEEeCC-CCCcEEEEEecCCC--CC
Q psy6030 1 MVSSHLIWNIVKNNNAYLMKADNIK---KWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA-DNKGFACVTKRATK--KP 74 (118)
Q Consensus 1 mmS~dL~W~ivrnnnsFlvK~~~~~---~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~~-~~~gv~v~~Kk~k~--kP 74 (118)
|||+||||||||+|||||+|+++++ ++||+||+||+|+|||+||||||+|+|||+|++ +++||+|++|+.+. +|
T Consensus 3 ~mS~dL~W~iir~nn~FlvKr~~~~~~~~~FSrep~NL~n~~S~kysGLan~K~v~V~~~~~~~~gv~l~~Kk~~~~~kP 82 (147)
T 3iz5_b 3 TVPEPLIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAP 82 (147)
T ss_dssp ------------------------------------------------------CCSSSCCCCCCCSSSCEECCCCCTTT
T ss_pred CCccccchhhccCcceEEEEecCCCCccceecCCCCCcccccccccccccccceeEEEecccCCCEEEEEEeccccCCCC
Confidence 4899999999999999999998544 889999999999999999999999999999986 78899999999887 99
Q ss_pred CCCCCcee----ecchhHHHHHHHhhhhcCCCChhhHHHHHHhc
Q psy6030 75 TADNKGFA----CVTKRATKKTLSGHVDIGSARMDARLYIFEMG 114 (118)
Q Consensus 75 a~~~k~~~----~k~~R~~~~~i~~~v~~~~yRpDL~~~A~~~~ 114 (118)
+ +++. ++|+|+++++|++++++++|||||+++|++|+
T Consensus 83 a---k~~~~~~l~k~~Rk~l~~I~~~v~~~~YR~DL~~~Al~Ra 123 (147)
T 3iz5_b 83 A---KLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARL 123 (147)
T ss_dssp T---CCCCEECCCSHHHHHHHHHHHHTSCCTHHHHHTTHHHHHH
T ss_pred c---cceEEEeecccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9 8876 78999999999999999999999999999997
No 2
>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O
Probab=100.00 E-value=1.8e-40 Score=242.67 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=90.1
Q ss_pred CCcceeeeeeecCceeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeCCCCCcEEEEEecCCC--CCC----
Q psy6030 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATK--KPT---- 75 (118)
Q Consensus 2 mS~dL~W~ivrnnnsFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~~~~~gv~v~~Kk~k~--kPa---- 75 (118)
|| ||||||||+|||||+|++ |++||+||+||+|+|||+||||||.|+|||+|++|| | |++|+.+. +|+
T Consensus 1 MS-dL~W~ivrnnnsFLvKr~--g~~FS~eP~NL~n~~S~kysGLan~KavgV~~~~~g-g--v~~Kk~k~~~kPa~~~~ 74 (134)
T 4a18_O 1 MS-QLVWEIVKNNNAFLVKNN--GVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAKQ-A--IATSLRKNQSHKVKKTG 74 (134)
T ss_dssp CH-HHHHHHHTTTCTTEEEET--TEEEECCTTCSSSBCSTTTCTTTSSCCEEEEEEGGG-E--EEEEEECCCCCCSSCCS
T ss_pred Cc-ceeehhhcCcceEEEeeC--CccccCCCCCccceeccccccccccceeEEEEcCCC-c--EEEecCcccCCCCcccc
Confidence 78 999999999999999998 899999999999999999999999999999997554 5 67777776 998
Q ss_pred CCCCce-e-ecchhHHHHHHHhhhhcCCCChhhHHHHHHhc
Q psy6030 76 ADNKGF-A-CVTKRATKKTLSGHVDIGSARMDARLYIFEMG 114 (118)
Q Consensus 76 ~~~k~~-~-~k~~R~~~~~i~~~v~~~~yRpDL~~~A~~~~ 114 (118)
...... . ++|+|+++++|+++++++ ||+++|++|+
T Consensus 75 k~~~~~~~~~k~~Rk~~k~I~~~~~~~----DL~~aAl~Ra 111 (134)
T 4a18_O 75 TIEAETLTVKGGVQRVAKVIRGRFQSK----GLKQFALKKL 111 (134)
T ss_dssp CSSEEEEEESSTHHHHHHHHHHHCCSH----HHHHHHHHHH
T ss_pred ceeEEEeccccchHHHHHHHHHHHhhc----hHHHHHHHHH
Confidence 322222 3 679999999999999863 9999999997
No 3
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=19.14 E-value=39 Score=20.38 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHH
Q psy6030 87 RATKKTLSGHVDIGSARMDARLYIF 111 (118)
Q Consensus 87 R~~~~~i~~~v~~~~yRpDL~~~A~ 111 (118)
..+...|...+..-+|+||....++
T Consensus 32 ~et~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 32 DKTVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp THHHHHHHHHHHHHTCCCC------
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHH
Confidence 3455667776666789999765443
No 4
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=16.41 E-value=51 Score=19.93 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=12.5
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHHH
Q psy6030 87 RATKKTLSGHVDIGSARMDARLYIFE 112 (118)
Q Consensus 87 R~~~~~i~~~v~~~~yRpDL~~~A~~ 112 (118)
..+...|...+..-+|+||.....++
T Consensus 38 ~~t~~rV~~~a~~lgY~pn~~a~~l~ 63 (67)
T 2l8n_A 38 QATRNRVEKAAREVGYLPQPMGRNVK 63 (67)
T ss_dssp HHHHHHHHHHHHHHCCCC--------
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHhh
Confidence 34556676767667899997665544
No 5
>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin, innate immunity, immune system; HET: MLD; 2.40A {Drosophila melanogaster} SCOP: d.118.1.1
Probab=12.79 E-value=1.7e+02 Score=20.66 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.1
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-||+-+. |..|-.=|.+..+-|+.. .|..+|||+..
T Consensus 71 hflI~~d--G~I~egr~~~~~gaH~~~----~N~~SIGIe~~ 106 (175)
T 2cb3_A 71 NFLVGCD--GNIYEGRGWKTVGAHTLG----YNRISLGISFI 106 (175)
T ss_dssp SEEECTT--SCEEESSCTTBCCSSSTT----TGGGEEEEEES
T ss_pred eEEECCC--CEEEECCCCCcccccCCC----cCCCeEEEEEE
Confidence 4777776 777777788888999844 37899999975
No 6
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Probab=12.76 E-value=1.5e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=28.0
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-||+-+. |..|-.=|.+..+-|+..| |..+|||+..
T Consensus 74 hflI~~d--G~I~egr~~~~~gaH~~g~----N~~SIGIe~~ 109 (180)
T 2xz4_A 74 NFLVGGD--GQIYVGRGWHIQGQHVNGY----GAISVSIAFI 109 (180)
T ss_dssp SEEECTT--SCEEESSCSSBCCCCSSCC----CCSCEEEEES
T ss_pred eEEECCC--CEEEECCCCcccccccCCc----CCCeEEEEEE
Confidence 4677776 6777777888889998433 8899999976
No 7
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB: 2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Probab=12.52 E-value=1.6e+02 Score=20.40 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=28.2
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-||+-+. |..|-.=|.+..+-|+.. .|..+|||+..
T Consensus 65 hflI~~d--G~I~egr~~~~~gaH~~g----~N~~SIGIe~~ 100 (163)
T 1sk4_A 65 HFLVGQD--GGVYEGVGWHIQGSHTYG----FNDIALGIAFI 100 (163)
T ss_dssp SEEECTT--SCEEESSCTTBCCCSSTT----CTTTEEEEEES
T ss_pred eEEECCC--CEEEEcCCCCccccccCC----cCCCeEEEEEe
Confidence 4777776 777777788888999843 37899999986
No 8
>2f2l_X Peptidoglycan recognition protein-LC isoform LCX; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1
Probab=11.42 E-value=1.7e+02 Score=20.51 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=28.0
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-||+-+. |..|--=|.+..+-|+.. .|..+|||+..
T Consensus 67 hflI~~d--G~I~egr~~~~~gaHa~~----~N~~SIGI~~~ 102 (167)
T 2f2l_X 67 NFLVGGD--GRVYEGRGWDYVGAHTKG----YNRGSIGISFI 102 (167)
T ss_dssp SEEECTT--SCEEESSCTTBCCSSSTT----CSTTCEEEEES
T ss_pred eEEECCC--CEEEEcCCCcccccccCC----CCCCEEEEEEE
Confidence 4677776 667777788899999854 37899999975
No 9
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Probab=11.40 E-value=2.3e+02 Score=19.44 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=31.0
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-|++- . |..+-.-|.+-.+.|+-.-+|-.|..+|||+-.
T Consensus 54 Hy~I~-d--g~i~q~v~~~~~awHaG~~~~~~N~~SIGIE~~ 92 (159)
T 1yb0_A 54 HVAVD-D--KQAIQGIPWERNAWACGDGNGPGNRESISVEIC 92 (159)
T ss_dssp SEEEC-S--SCEEECSCTTBCCSCSSCSSSHHHHHEEEEEET
T ss_pred EEEEe-C--CeEEEEecCCccEEEeCCCCCCCCcCEEEEEEE
Confidence 35665 4 667778899999999876556789999999975
No 10
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=11.34 E-value=2e+02 Score=17.17 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhcCCCChhhHHHHHHhcc
Q psy6030 88 ATKKTLSGHVDIGSARMDARLYIFEMGL 115 (118)
Q Consensus 88 ~~~~~i~~~v~~~~yRpDL~~~A~~~~~ 115 (118)
--...|..++..-+|=|||...|++.++
T Consensus 21 ~e~~~i~~w~~~~~~~~elI~~A~~~a~ 48 (78)
T 2zc2_A 21 FELEDLQKTVSDDKTDPDLVRSALREAV 48 (78)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3466788888777899999999999886
Done!