Query psy6030
Match_columns 118
No_of_seqs 103 out of 249
Neff 5.2
Searched_HMMs 13730
Date Sat Aug 17 00:45:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpza1 a.35.1.5 (A:2-58) Puri 52.4 4.1 0.0003 23.3 2.2 27 87-113 29-55 (57)
2 d2hsga1 a.35.1.5 (A:2-58) Gluc 33.9 10 0.00073 21.5 1.8 25 87-111 30-54 (57)
3 d1efaa1 a.35.1.5 (A:2-60) Lac 33.7 10 0.00073 21.7 1.8 27 87-113 31-57 (59)
4 d1jhfa1 a.4.5.2 (A:2-72) LexA 29.3 16 0.0012 21.1 2.3 32 86-117 7-38 (71)
5 d2cb3a1 d.118.1.1 (A:174-344) 15.7 58 0.0043 21.2 3.2 36 16-57 68-103 (171)
6 d1ohta_ d.118.1.1 (A:) Peptido 14.3 65 0.0047 20.9 3.1 36 16-57 68-103 (174)
7 d1yb0a1 d.118.1.1 (A:1-157) N- 12.3 99 0.0072 19.6 3.5 38 17-57 55-92 (157)
8 d1ycka1 d.118.1.1 (A:9-175) Pe 10.1 1.1E+02 0.0084 19.3 3.3 37 16-57 67-103 (167)
9 d2f2la1 d.118.1.1 (A:355-520) 10.1 73 0.0053 20.5 2.2 37 17-57 66-102 (166)
10 d1uxda_ a.35.1.5 (A:) Fructose 9.3 36 0.0026 19.0 0.3 20 88-107 33-52 (59)
No 1
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=52.36 E-value=4.1 Score=23.32 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=20.1
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHHHh
Q psy6030 87 RATKKTLSGHVDIGSARMDARLYIFEM 113 (118)
Q Consensus 87 R~~~~~i~~~v~~~~yRpDL~~~A~~~ 113 (118)
..+-+.|...+.+-+|+||....+++.
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 55 (57)
T d1qpza1 29 EETRNAVWAAIKELHYSPSAVARSLKV 55 (57)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHhh
Confidence 445666777777778999998777654
No 2
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=33.93 E-value=10 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=17.5
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHH
Q psy6030 87 RATKKTLSGHVDIGSARMDARLYIF 111 (118)
Q Consensus 87 R~~~~~i~~~v~~~~yRpDL~~~A~ 111 (118)
..+-+.|...+.+-+|+||....++
T Consensus 30 ~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 30 PSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 4456667777777789999865544
No 3
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.74 E-value=10 Score=21.71 Aligned_cols=27 Identities=4% Similarity=-0.138 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHHHh
Q psy6030 87 RATKKTLSGHVDIGSARMDARLYIFEM 113 (118)
Q Consensus 87 R~~~~~i~~~v~~~~yRpDL~~~A~~~ 113 (118)
-.+.+.|...+.+.+|+||....+++.
T Consensus 31 ~~tr~rI~~~a~~lgY~pn~~Ar~L~~ 57 (59)
T d1efaa1 31 AKTREKVEAAMAELNYIPNRVAQQLAG 57 (59)
T ss_dssp THHHHHHHHHHHHHTCCCCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHhc
Confidence 446667888888889999988777653
No 4
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=29.28 E-value=16 Score=21.05 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhhhcCCCChhhHHHHHHhcccc
Q psy6030 86 KRATKKTLSGHVDIGSARMDARLYIFEMGLMS 117 (118)
Q Consensus 86 ~R~~~~~i~~~v~~~~yRpDL~~~A~~~~~~~ 117 (118)
-++++..|+..+..++|=|-+++.|-+.|+-|
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S 38 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRS 38 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCC
Confidence 46789999999999999999999999888754
No 5
>d2cb3a1 d.118.1.1 (A:174-344) Peptidoglycan-recognition protein-LE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.72 E-value=58 Score=21.23 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=28.9
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-|++.+. |..|---|.+..+-|...| |..+|||...
T Consensus 68 h~~I~~d--G~I~~gr~~~~~g~H~~~~----N~~sIgI~~v 103 (171)
T d2cb3a1 68 NFLVGCD--GNIYEGRGWKTVGAHTLGY----NRISLGISFI 103 (171)
T ss_dssp SEEECTT--SCEEESSCTTBCCSSSTTT----GGGEEEEEES
T ss_pred EEEECCC--CeEEEcCCccceecccccc----cCCcccEEEE
Confidence 3677766 7788888999999998654 7899999875
No 6
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb (Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.26 E-value=65 Score=20.93 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=28.9
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-|++-+. |..|---|.|..+-|+..+ |..+|||+..
T Consensus 68 h~lI~~d--G~I~~gr~~~~~g~h~~~~----N~~sigI~~i 103 (174)
T d1ohta_ 68 SFGIGGD--GMIYTGRGFNVIGAHAPKY----NDKSVGIVLI 103 (174)
T ss_dssp SEEECTT--SCEEESSCTTBCCSSSTTT----TTSEEEEEES
T ss_pred eEEECCC--CEEEECCCccccccccccC----CCCeeeEEEE
Confidence 4777776 7788888999999997544 7799999976
No 7
>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus anthracis [TaxId: 1392]}
Probab=12.26 E-value=99 Score=19.60 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=29.7
Q ss_pred eeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 17 FlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
|++.. +...-.-|.|-.+.|+..++|-.|..+|||+..
T Consensus 55 y~I~d---g~i~q~~p~~~~awHag~~~~~~N~~sIGIE~~ 92 (157)
T d1yb0a1 55 VAVDD---KQAIQGIPWERNAWACGDGNGPGNRESISVEIC 92 (157)
T ss_dssp EEECS---SCEEECSCTTBCCSCSSCSSSHHHHHEEEEEET
T ss_pred EEecc---cceeeeeeccceeeeeecccccCCceEEEEEEe
Confidence 45643 334566788999999998888889999999975
No 8
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein, PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.12 E-value=1.1e+02 Score=19.29 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=28.3
Q ss_pred eeeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 16 AYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 16 sFlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
-||+-+. |..|---|.+..+-|.. +-.|..+|||+..
T Consensus 67 h~lI~~d--G~I~~gr~~~~~~~ha~---~~~N~~sigI~~~ 103 (167)
T d1ycka1 67 NFLIGED--GLVYEGRGWNFTGAHSG---HLWNPMSIGISFM 103 (167)
T ss_dssp SEEECTT--SCEEESSTTTBCCSSSC---TTTGGGEEEEEES
T ss_pred eEEECCC--CEEEEeeCccccccccC---CCCCCCeEEEEEE
Confidence 3677655 77888888898888875 2358999999875
No 9
>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.06 E-value=73 Score=20.53 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=28.4
Q ss_pred eeeeeCCCCcccccCCCCCCCcccccccccccceeeEEEeC
Q psy6030 17 YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPT 57 (118)
Q Consensus 17 FlvK~~~~~~~FS~EP~NL~n~~S~kysGlan~Kav~V~~~ 57 (118)
||+.+. |..|---|.|..+-|...+.. |..+|||..-
T Consensus 66 flI~~d--G~i~egR~~~~~g~ha~~~~~--N~~sigI~~i 102 (166)
T d2f2la1 66 FLIGGD--GNVYVGRGWNKMGAHMNNINY--DSQSLSFAYI 102 (166)
T ss_dssp EEECTT--SCEEESSTTTBCCCSSSCHHH--HTTCEEEEES
T ss_pred EEEcCC--ceEEEcCCCcccccccCCCCC--cCCEEEEEEe
Confidence 677766 777888888999988754333 7899999875
No 10
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.27 E-value=36 Score=18.99 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhcCCCChhhH
Q psy6030 88 ATKKTLSGHVDIGSARMDAR 107 (118)
Q Consensus 88 ~~~~~i~~~v~~~~yRpDL~ 107 (118)
.+-+.|...+.+-+|+|+..
T Consensus 33 ~tr~rV~~~a~~lgY~pn~~ 52 (59)
T d1uxda_ 33 KTVEKVMAVVREHNYHPNAV 52 (59)
T ss_dssp TTHHHHHHHHHHHTCCCCSC
T ss_pred HHHHHHHHHHHHHCCCcCHH
Confidence 45566777777778999865
Done!