Your job contains 1 sequence.
>psy6030
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN
KGFACVTKRATKKPTADNKGFACVTKRATKKTLSGHVDIGSARMDARLYIFEMGLMSA
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6030
(118 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035422 - symbol:RpL28 "Ribosomal protein L28" spe... 207 8.6e-17 1
ZFIN|ZDB-GENE-040930-10 - symbol:rpl28 "ribosomal protein... 173 3.4e-13 1
UNIPROTKB|H0YKD8 - symbol:RPL28 "60S ribosomal protein L2... 172 4.4e-13 1
UNIPROTKB|Q3T0L7 - symbol:RPL28 "60S ribosomal protein L2... 168 1.2e-12 1
UNIPROTKB|E2R0A6 - symbol:RPL28 "Uncharacterized protein"... 168 1.2e-12 1
UNIPROTKB|P46779 - symbol:RPL28 "60S ribosomal protein L2... 168 1.2e-12 1
MGI|MGI:101839 - symbol:Rpl28 "ribosomal protein L28" spe... 168 1.2e-12 1
UNIPROTKB|Q642E2 - symbol:Rpl28 "Ribosomal protein L28" s... 168 1.2e-12 1
RGD|2318912 - symbol:LOC100362069 "ribosomal protein L28-... 165 2.4e-12 1
RGD|1565183 - symbol:RGD1565183 "similar to ribosomal pro... 164 3.1e-12 1
UNIPROTKB|C9JB50 - symbol:RPL28 "Ribosomal protein L28, i... 162 5.0e-12 1
UNIPROTKB|H0YMF4 - symbol:RPL28 "60S ribosomal protein L2... 162 5.0e-12 1
UNIPROTKB|G5E9L2 - symbol:RPL28 "Ribosomal protein L28, i... 161 6.4e-12 1
RGD|1585117 - symbol:LOC690096 "similar to ribosomal prot... 158 1.3e-11 1
TAIR|locus:2052010 - symbol:AT2G19730 species:3702 "Arabi... 155 2.8e-11 1
RGD|621193 - symbol:Rpl28 "ribosomal protein L28" species... 153 4.5e-11 1
TAIR|locus:2118289 - symbol:AT4G29410 species:3702 "Arabi... 152 5.8e-11 1
UNIPROTKB|H0YLP6 - symbol:RPL28 "60S ribosomal protein L2... 150 9.4e-11 1
ASPGD|ASPL0000004497 - symbol:AN6500 species:162425 "Emer... 139 1.4e-09 1
DICTYBASE|DDB_G0282379 - symbol:rpl28 "60S ribosomal prot... 129 1.6e-08 1
UNIPROTKB|D4A8B6 - symbol:D4A8B6 "Uncharacterized protein... 125 4.2e-08 1
POMBASE|SPAC1687.06c - symbol:rpl44 "60S ribosomal protei... 115 4.8e-07 1
WB|WBGene00004442 - symbol:rpl-28 species:6239 "Caenorhab... 115 4.8e-07 1
UNIPROTKB|I3LSZ6 - symbol:RPL28 "Uncharacterized protein"... 107 3.4e-06 1
>FB|FBgn0035422 [details] [associations]
symbol:RpL28 "Ribosomal protein L28" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=IMP] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR002672 EMBL:AE014296 GO:GO:0051298 GO:GO:0022008
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 EMBL:AY071444 RefSeq:NP_001163336.1
RefSeq:NP_001163337.1 RefSeq:NP_647791.2 RefSeq:NP_728839.1
RefSeq:NP_728840.1 RefSeq:NP_728841.2 UniGene:Dm.14669
ProteinModelPortal:Q9VZS5 SMR:Q9VZS5 IntAct:Q9VZS5 MINT:MINT-786006
STRING:Q9VZS5 PaxDb:Q9VZS5 PRIDE:Q9VZS5 EnsemblMetazoa:FBtr0073095
EnsemblMetazoa:FBtr0073097 EnsemblMetazoa:FBtr0073098
EnsemblMetazoa:FBtr0302300 EnsemblMetazoa:FBtr0302301
EnsemblMetazoa:FBtr0306567 GeneID:38397 KEGG:dme:Dmel_CG12740
FlyBase:FBgn0035422 InParanoid:Q9VZS5 OrthoDB:EOG4PZGQ4
PhylomeDB:Q9VZS5 ChiTaRS:RPL28 GenomeRNAi:38397 NextBio:808415
GermOnline:CG12740 Uniprot:Q9VZS5
Length = 144
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
SSHL W I++NNNA+L+K ++KK FS EP NL +++S++YSG++H KT+ + P AD KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 63 FACVTKRA--TKKPTADNK--GFACVTKRATKK 91
F V K+ ++P + F +R+ KK
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKK 96
>ZFIN|ZDB-GENE-040930-10 [details] [associations]
symbol:rpl28 "ribosomal protein L28" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0009790 "embryo development" evidence=IMP] InterPro:IPR002672
ZFIN:ZDB-GENE-040930-10 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0003735 KO:K02903 PANTHER:PTHR10544 CTD:6158
HOVERGEN:HBG000701 EMBL:BC055584 EMBL:AY648842 IPI:IPI00486130
RefSeq:NP_957355.1 UniGene:Dr.76048 STRING:Q7SXI9 GeneID:394036
KEGG:dre:394036 InParanoid:Q7SXI9 NextBio:20814998 Uniprot:Q7SXI9
Length = 138
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 41/112 (36%), Positives = 66/112 (58%)
Query: 1 MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
M S HL W +++N++++L+K + K+ +S EP NL +F+++GLIH KTI I+P AD
Sbjct: 1 MASPHLQWMVIRNSSSFLIKRN--KQTYSTEPNNLKARNAFRFNGLIHRKTIGIEPAADG 58
Query: 61 KGFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
KG V K+ + +KP A + G + K RAT ++ + R D R+
Sbjct: 59 KGVVVVLKKRSGQRKP-ATSYGKITINKNSRATLASVRNIIRKNKYRRDLRM 109
>UNIPROTKB|H0YKD8 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YKD8 SMR:H0YKD8
Ensembl:ENST00000560055 Bgee:H0YKD8 Uniprot:H0YKD8
Length = 170
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARLYIFEMGLMS 117
G V KR + +KP A + + K RAT ++ + R D R+ +G
Sbjct: 59 GVVVVIKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMLAGRVGRQQ 117
Query: 118 A 118
A
Sbjct: 118 A 118
>UNIPROTKB|Q3T0L7 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 EMBL:BC102344
IPI:IPI00707537 RefSeq:NP_001030580.1 UniGene:Bt.28844
STRING:Q3T0L7 PRIDE:Q3T0L7 Ensembl:ENSBTAT00000031754 GeneID:618702
KEGG:bta:618702 CTD:6158 GeneTree:ENSGT00390000008732
HOVERGEN:HBG000701 InParanoid:Q3T0L7 OrthoDB:EOG4W9J5C
NextBio:20901322 Uniprot:Q3T0L7
Length = 137
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 41/111 (36%), Positives = 65/111 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVMKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>UNIPROTKB|E2R0A6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 GeneTree:ENSGT00390000008732
EMBL:AAEX03000731 RefSeq:XP_003432751.1 RefSeq:XP_533581.3
Ensembl:ENSCAFT00000004065 GeneID:476378 KEGG:cfa:476378
NextBio:20852046 Uniprot:E2R0A6
Length = 137
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 41/111 (36%), Positives = 65/111 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVLKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>UNIPROTKB|P46779 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR002672 Reactome:REACT_116125
GO:GO:0000184 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
EMBL:CH471135 EMBL:AC020922 GO:GO:0006415 GO:GO:0006414
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:U14969 EMBL:CR457024 EMBL:AK311760 EMBL:AK293736
EMBL:BC010173 EMBL:BC010182 EMBL:BC011582 IPI:IPI00182533
IPI:IPI00910727 PIR:S55915 RefSeq:NP_000982.2 RefSeq:NP_001129606.1
RefSeq:NP_001129607.1 UniGene:Hs.652114 ProteinModelPortal:P46779
SMR:P46779 IntAct:P46779 MINT:MINT-5004261 STRING:P46779
PhosphoSite:P46779 DMDM:22002069 PaxDb:P46779 PeptideAtlas:P46779
PRIDE:P46779 DNASU:6158 Ensembl:ENST00000344063
Ensembl:ENST00000559463 Ensembl:ENST00000560583 GeneID:6158
KEGG:hsa:6158 UCSC:uc002qkv.3 GeneCards:GC19P055897 HGNC:HGNC:10330
HPA:HPA050459 MIM:603638 neXtProt:NX_P46779 PharmGKB:PA34710
InParanoid:P46779 PhylomeDB:P46779 GenomeRNAi:6158 NextBio:23915
PMAP-CutDB:P46779 ArrayExpress:P46779 Bgee:P46779 CleanEx:HS_RPL28
Genevestigator:P46779 GermOnline:ENSG00000108107 Uniprot:P46779
Length = 137
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 41/111 (36%), Positives = 65/111 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVIKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>MGI|MGI:101839 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR002672
MGI:MGI:101839 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 CTD:6158 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C
ChiTaRS:RPL28 EMBL:X74856 EMBL:AK018714 EMBL:AK076133 EMBL:BC024395
IPI:IPI00222547 PIR:I48738 RefSeq:NP_033107.1 UniGene:Mm.379002
ProteinModelPortal:P41105 SMR:P41105 DIP:DIP-59974N IntAct:P41105
STRING:P41105 PhosphoSite:P41105 PaxDb:P41105 PRIDE:P41105
Ensembl:ENSMUST00000032597 Ensembl:ENSMUST00000078432 GeneID:19943
KEGG:mmu:19943 InParanoid:P41105 NextBio:297461 Bgee:P41105
CleanEx:MM_RPL28 Genevestigator:P41105
GermOnline:ENSMUSG00000030432 GermOnline:ENSMUSG00000058603
Uniprot:P41105
Length = 137
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 41/111 (36%), Positives = 65/111 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVMKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>UNIPROTKB|Q642E2 [details] [associations]
symbol:Rpl28 "Ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 RGD:621193
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH474075
eggNOG:NOG148062 KO:K02903 OMA:KPFSTEP PANTHER:PTHR10544 CTD:6158
GeneTree:ENSGT00390000008732 HOVERGEN:HBG000701 UniGene:Rn.36614
EMBL:BC081800 IPI:IPI00471679 RefSeq:NP_073188.2 SMR:Q642E2
STRING:Q642E2 Ensembl:ENSRNOT00000058943 GeneID:64638
KEGG:rno:64638 InParanoid:Q642E2 NextBio:613620
Genevestigator:Q642E2 Uniprot:Q642E2
Length = 137
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 41/111 (36%), Positives = 65/111 (58%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVMKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>RGD|2318912 [details] [associations]
symbol:LOC100362069 "ribosomal protein L28-like" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
RGD:2318912 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10544 OMA:QNTPAKL GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00780624 RefSeq:XP_002725599.1
RefSeq:XP_002728752.1 Ensembl:ENSRNOT00000057158 GeneID:100362069
KEGG:rno:100362069 UCSC:RGD:2318912 Uniprot:D3ZJD3
Length = 137
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKAGNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTKRATKKTLS 94
G V KR + +KP A + + K A + TLS
Sbjct: 59 GVVVVMKRRSGQRKP-ATSYVRTTINKNA-RATLS 91
>RGD|1565183 [details] [associations]
symbol:RGD1565183 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1565183 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 OrthoDB:EOG4W9J5C IPI:IPI00215480
RefSeq:XP_001057767.1 RefSeq:XP_212890.1 PRIDE:D3ZG08
Ensembl:ENSRNOT00000049254 GeneID:293846 KEGG:rno:293846 CTD:293846
OMA:THAKRYS NextBio:637123 Uniprot:D3ZG08
Length = 137
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF Y+GLIH KT+ ++PTAD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPKNLKARNSFGYNGLIHRKTVGVEPTADGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTKRATKKTLS 94
G V KR + +KP A + + K A + TLS
Sbjct: 59 GVVVVMKRRSGQRKP-AISYVRTTINKNA-RATLS 91
>UNIPROTKB|C9JB50 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 DNASU:6158 GeneID:6158 KEGG:hsa:6158
HGNC:HGNC:10330 PharmGKB:PA34710 GenomeRNAi:6158 NextBio:23915
IPI:IPI00914543 RefSeq:NP_001129609.1 SMR:C9JB50 STRING:C9JB50
Ensembl:ENST00000428193 UCSC:uc010yfy.1 HOGENOM:HOG000186171
Uniprot:C9JB50
Length = 69
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATK 72
G V KR ++
Sbjct: 59 GVVVVIKRRSE 69
>UNIPROTKB|H0YMF4 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YMF4 SMR:H0YMF4
Ensembl:ENST00000558752 Bgee:H0YMF4 Uniprot:H0YMF4
Length = 112
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/76 (40%), Positives = 51/76 (67%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRATKKPTAD 77
G V KR + + + +
Sbjct: 59 GVVVVIKRRSGRKSGN 74
>UNIPROTKB|G5E9L2 [details] [associations]
symbol:RPL28 "Ribosomal protein L28, isoform CRA_b"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CH471135
EMBL:AC020922 KO:K02903 PANTHER:PTHR10544 CTD:6158 ChiTaRS:RPL28
UniGene:Hs.652114 GeneID:6158 KEGG:hsa:6158 HGNC:HGNC:10330
GenomeRNAi:6158 NextBio:23915 RefSeq:NP_001129608.1
ProteinModelPortal:G5E9L2 SMR:G5E9L2 PRIDE:G5E9L2
Ensembl:ENST00000431533 ArrayExpress:G5E9L2 Bgee:G5E9L2
Uniprot:G5E9L2
Length = 87
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKR 69
G V KR
Sbjct: 59 GVVVVIKR 66
>RGD|1585117 [details] [associations]
symbol:LOC690096 "similar to ribosomal protein L28"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 RGD:1585117 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732
OrthoDB:EOG4W9J5C IPI:IPI00958507 Ensembl:ENSRNOT00000012255
UCSC:RGD:1585117 Uniprot:D3ZEI0
Length = 145
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL S +Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSLRYNGLIHRKTVGVEPAADGK 58
Query: 62 GFACVTKRAT--KKP 74
G V KR + +KP
Sbjct: 59 GVVVVMKRRSGQRKP 73
>TAIR|locus:2052010 [details] [associations]
symbol:AT2G19730 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR002672 EnsemblPlants:AT2G19730.2 GO:GO:0005886
GO:GO:0009506 GO:GO:0005618 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003735 EMBL:AC005169
GO:GO:0022625 EMBL:AY050769 EMBL:AY079378 IPI:IPI00516217
PIR:D84580 RefSeq:NP_001031374.1 RefSeq:NP_001077920.1
RefSeq:NP_179563.1 UniGene:At.12891 ProteinModelPortal:O82204
SMR:O82204 STRING:O82204 PaxDb:O82204 PRIDE:O82204 ProMEX:O82204
EnsemblPlants:AT2G19730.1 EnsemblPlants:AT2G19730.3 GeneID:816492
KEGG:ath:AT2G19730 TAIR:At2g19730 eggNOG:NOG148062
HOGENOM:HOG000200513 InParanoid:O82204 KO:K02903 OMA:KPFSTEP
PhylomeDB:O82204 ProtClustDB:CLSN2683192 Genevestigator:O82204
GermOnline:AT2G19730 PANTHER:PTHR10544 Uniprot:O82204
Length = 143
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 44/93 (47%), Positives = 51/93 (54%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVKNNN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ A
Sbjct: 4 VPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ-AA 62
Query: 59 DNKGFACVTKRATKKPTADNKGFACVTKRATKK 91
D K A V AT K NK V K KK
Sbjct: 63 D-KDQAVVL--ATTKTKKQNKPKLSVNKSILKK 92
>RGD|621193 [details] [associations]
symbol:Rpl28 "ribosomal protein L28" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR002672 RGD:621193 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:NOG148062 HOGENOM:HOG000200513
PANTHER:PTHR10544 HOVERGEN:HBG000701 OrthoDB:EOG4W9J5C EMBL:X52619
IPI:IPI00555189 PIR:S13072 UniGene:Rn.36614 IntAct:P17702
STRING:P17702 PRIDE:P17702 UCSC:RGD:621193 InParanoid:P17702
ArrayExpress:P17702 Genevestigator:P17702
GermOnline:ENSRNOG00000017127 Uniprot:P17702
Length = 137
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 39/111 (35%), Positives = 63/111 (56%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++ D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58
Query: 62 GFACVTKRAT--KKPTADNKGFACVTK--RATKKTLSGHVDIGSARMDARL 108
G V KR + +KP A + + K RAT ++ + R D R+
Sbjct: 59 GVVVVMKRRSGQRKP-ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM 108
>TAIR|locus:2118289 [details] [associations]
symbol:AT4G29410 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR002672
EnsemblPlants:AT4G29410.1 GO:GO:0005886 GO:GO:0009506 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161574 GO:GO:0006412 GO:GO:0003735
EMBL:AL096692 GO:GO:0022625 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 ProtClustDB:CLSN2683192 PANTHER:PTHR10544 EMBL:AY072328
EMBL:BT000047 EMBL:AY088304 IPI:IPI00539771 PIR:B85343
RefSeq:NP_001078470.1 RefSeq:NP_194670.1 UniGene:At.19931
ProteinModelPortal:Q9M0E2 SMR:Q9M0E2 STRING:Q9M0E2 PaxDb:Q9M0E2
PRIDE:Q9M0E2 EnsemblPlants:AT4G29410.2 GeneID:829062
KEGG:ath:AT4G29410 TAIR:At4g29410 InParanoid:Q9M0E2 OMA:QNTPAKL
PhylomeDB:Q9M0E2 Genevestigator:Q9M0E2 GermOnline:AT4G29410
Uniprot:Q9M0E2
Length = 143
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 40/96 (41%), Positives = 51/96 (53%)
Query: 2 VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
V LIW IVK NN +L+K N K FSKE NL N+ S+K+SGL + KT+ IQ
Sbjct: 4 VPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAG 63
Query: 59 DNKGFACVTKRATKKPTADNKGFACVTKRATKKTLS 94
++G T + TK+ NK V K KK S
Sbjct: 64 KDQGVVLGTTK-TKR---QNKPKLSVNKSILKKEFS 95
>UNIPROTKB|H0YLP6 [details] [associations]
symbol:RPL28 "60S ribosomal protein L28" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC020922 PANTHER:PTHR10544
ChiTaRS:RPL28 HGNC:HGNC:10330 ProteinModelPortal:H0YLP6 SMR:H0YLP6
Ensembl:ENST00000558131 Bgee:H0YLP6 Uniprot:H0YLP6
Length = 89
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N +++L+K + K+ +S EP NL SF+Y+GLIH KT+ ++P AD K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 62 G 62
G
Sbjct: 59 G 59
>ASPGD|ASPL0000004497 [details] [associations]
symbol:AN6500 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002672 GO:GO:0006412 GO:GO:0005840 EMBL:BN001301
GO:GO:0003735 HOGENOM:HOG000200513 OMA:KPFSTEP PANTHER:PTHR10544
EnsemblFungi:CADANIAT00007267 Uniprot:C8V0H7
Length = 157
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VSS L+W + +N NAYL+K + FS++P N+ N SFKY+G ++K I +Q T +N
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFKYAGYSNTKAIGVQAT-EN 66
Query: 61 KGFACVTKR-ATKKPTADNKGFACVT 85
G +TK+ T + A K A VT
Sbjct: 67 GGVVTITKKPGTSQQPA--KSLAVVT 90
>DICTYBASE|DDB_G0282379 [details] [associations]
symbol:rpl28 "60S ribosomal protein L28"
species:44689 "Dictyostelium discoideum" [GO:0005615 "extracellular
space" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002672
dictyBase:DDB_G0282379 GO:GO:0005615 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:NOG148062 KO:K02903 PANTHER:PTHR10544 EMBL:AY007804
RefSeq:XP_640178.1 STRING:Q9GS21 PRIDE:Q9GS21
EnsemblProtists:DDB0214936 GeneID:8623717 KEGG:ddi:DDB_G0282379
OMA:EPGNLRN Uniprot:Q9GS21
Length = 132
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 45/127 (35%), Positives = 63/127 (49%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W+I+K NNA+L + + S EPGNL N S KYSGL TI + A N
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGLT--LSAEPGNLRNKNSLKYSGLARRTTIDV--AAVN- 55
Query: 62 GFACVTKRATKK---PTADNKG--FACVTKRATK---KTLSGHV--DIGSARMDARLYIF 111
G V+ + KK P K F+ V R T KTL+ ++ +A + RL+
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQYAPELRAAAL-GRLHRV 114
Query: 112 EMGLMSA 118
+ L SA
Sbjct: 115 QSALRSA 121
>UNIPROTKB|D4A8B6 [details] [associations]
symbol:D4A8B6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002672
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
IPI:IPI00781093 Ensembl:ENSRNOT00000061244 Uniprot:D4A8B6
Length = 119
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S+HL W +V+N ++ L+K N + ++ EP NL +F YSGLIH KT+ +P AD +
Sbjct: 1 MSAHLQWMVVRNCSSVLIKR-NEQTTYTMEPNNLRARNAFSYSGLIHHKTVGAEPVADGR 59
>POMBASE|SPAC1687.06c [details] [associations]
symbol:rpl44 "60S ribosomal protein L28/L44
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002181
"cytoplasmic translation" evidence=NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR002672 PomBase:SPAC1687.06c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022625
eggNOG:NOG148062 HOGENOM:HOG000200513 KO:K02903 OMA:KPFSTEP
PANTHER:PTHR10544 EMBL:AB016007 PIR:T37749 PIR:T43380
RefSeq:NP_593124.1 IntAct:O14069 STRING:O14069
EnsemblFungi:SPAC1687.06c.1 GeneID:2542782 KEGG:spo:SPAC1687.06c
OrthoDB:EOG4ZGSP7 NextBio:20803826 Uniprot:O14069
Length = 134
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
VS+ LIW ++++NN +L+K F++EP N+ + ++SGL + K + +Q +
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSP- 61
Query: 61 KGFACVTKRATKKPTADNKGF-----ACVTKRATKKTLSGHV 97
+G +TK K K F A + R T K+++G +
Sbjct: 62 RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRI 103
>WB|WBGene00004442 [details] [associations]
symbol:rpl-28 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR002672 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:Z75547 eggNOG:NOG148062 HOGENOM:HOG000200513
KO:K02903 PANTHER:PTHR10544 GeneTree:ENSGT00390000008732 PIR:T24181
RefSeq:NP_506180.1 ProteinModelPortal:Q21930 SMR:Q21930
DIP:DIP-24374N IntAct:Q21930 MINT:MINT-1095802 STRING:Q21930
PaxDb:Q21930 EnsemblMetazoa:R11D1.8.1 EnsemblMetazoa:R11D1.8.2
EnsemblMetazoa:R11D1.8.3 GeneID:179739 KEGG:cel:CELE_R11D1.8
UCSC:R11D1.8.5 CTD:179739 WormBase:R11D1.8 InParanoid:Q21930
OMA:WQVIRNN NextBio:906662 Uniprot:Q21930
Length = 126
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
+S L+W +++NN+A+L I K FS E NL + S KYSGL + I + A K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA--K 58
Query: 62 GFACVTKRATKKP 74
G TK +P
Sbjct: 59 GVVVSTKNEKGRP 71
>UNIPROTKB|I3LSZ6 [details] [associations]
symbol:RPL28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR002672 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR10544
GeneTree:ENSGT00390000008732 Ensembl:ENSSSCT00000022565 OMA:FCYNGLI
Uniprot:I3LSZ6
Length = 122
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 5 HLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFA 64
HL W +V+ +++L+K + K+ ++ EP NL SF Y+GLIH T+ ++P AD+K
Sbjct: 4 HLQWMVVQICSSFLIKKN--KQTYNMEPNNLKARYSFCYNGLIHHTTVGVEP-ADDKRDR 60
Query: 65 CVTKRAT--KKP 74
+ K+ + +KP
Sbjct: 61 GMMKQGSGQRKP 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.130 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 118 118 0.00091 102 3 11 22 0.48 30
29 0.47 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 584 (62 KB)
Total size of DFA: 129 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.92u 0.09s 13.01t Elapsed: 00:00:06
Total cpu time: 12.92u 0.09s 13.01t Elapsed: 00:00:06
Start: Thu Aug 15 16:11:06 2013 End: Thu Aug 15 16:11:12 2013