RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6030
         (118 letters)



>gnl|CDD|201967 pfam01778, Ribosomal_L28e, Ribosomal L28e protein family. 
          Length = 114

 Score = 76.8 bits (190), Expect = 2e-19
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 6  LIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFAC 65
          LIW I++ NN +L+K +   K FS+EP NL  L S KYSGL +SK + + PTA   G   
Sbjct: 1  LIWEIIRKNNCFLVKRN--GKTFSREPYNLTGLCSRKYSGLANSKYVTVVPTA-KGGVVL 57

Query: 66 VTKRATK 72
          VTK+  +
Sbjct: 58 VTKKPKR 64


>gnl|CDD|199847 cd03865, M14_CPE, Peptidase M14 carboxypeptidase subfamily
           N/E-like; Carboxypeptidase E subgroup.  Peptidase M14
           Carboxypeptidase (CP) E (CPE, also known as
           carboxypeptidase H, and enkephalin convertase; EC
           3.4.17.10) belongs to the N/E subfamily of the M14
           family of metallocarboxypeptidases (MCPs).The M14 family
           are zinc-binding CPs which hydrolyze single, C-terminal
           amino acids from polypeptide chains, and have a
           recognition site for the free C-terminal carboxyl group,
           which is a key determinant of specificity. CPE is an
           important enzyme responsible for the proteolytic
           processing of prohormone intermediates (such as
           pro-insulin, pro-opiomelanocortin, or
           pro-gonadotropin-releasing hormone) by specifically
           removing C-terminal basic residues. In addition, it has
           been proposed that the regulated secretory pathway (RSP)
           of the nervous and endocrine systems utilizes
           membrane-bound CPE as a sorting receptor. A naturally
           occurring point mutation in CPE reduces the stability of
           the enzyme and causes its degradation, leading to an
           accumulation of numerous neuroendocrine peptides that
           result in obesity and hyperglycemia. Reduced CPE enzyme
           and receptor activity could underlie abnormal placental
           phenotypes from the observation that CPE is
           down-regulated  in enlarged placentas of interspecific
           hybrid (interspecies hybrid placental dysplasia, IHPD)
           and cloned mice.
          Length = 323

 Score = 26.5 bits (58), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 46  LIHSKTIHIQPTADNKGFACVTKRATKKP 74
           LIHS  IHI P+ +  GF    ++A  +P
Sbjct: 97  LIHSTRIHIMPSLNPDGF----EKAASQP 121


>gnl|CDD|222064 pfam13351, DUF4099, Protein of unknown function (DUF4099).  A
           family of uncharacterized proteins found by clustering
           human gut metagenomic sequences. The C-terminal repeat
           region of this family is DUF4098, pfam13345.
          Length = 84

 Score = 25.2 bits (56), Expect = 4.2
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 92  TLSGHVDIGSARMDARLYIFEMG 114
            +S +++ G    DARL +    
Sbjct: 40  PISINIEGGVITTDARLSLVRDE 62


>gnl|CDD|221583 pfam12449, DUF3684, Protein of unknown function (DUF3684).  This
           domain family is found in eukaryotes, and is typically
           between 1072 and 1090 amino acids in length.
          Length = 1084

 Score = 26.1 bits (58), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 47  IHSKTIHIQPTADNKGFACVTKRATKKPTADNKGFACVT 85
           +H  T +IQ +     FA   +RATKKP       A +T
Sbjct: 132 LHIFTANIQTSVSQS-FAAELERATKKPPPKTTKLAILT 169


>gnl|CDD|140328 PTZ00307, PTZ00307, ethanolamine phosphotransferase; Provisional.
          Length = 417

 Score = 26.0 bits (57), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 32 PGNLPNLASFKYSG 45
          P  LPNL  +KYS 
Sbjct: 22 PAYLPNLKKYKYSS 35


>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
          Length = 497

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 77  DNKGFACVTKRATKKTLSGHVDIGSARMDARLY 109
           D +GF  +T R     +SG  +I S+ ++  +Y
Sbjct: 384 DEEGFLYLTDRKKDMIISGGENIASSEVERVIY 416


>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
          Length = 1135

 Score = 25.4 bits (56), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 51  TIHIQPTADNKGFACVTKRATKKPTADNKGFACVTK 86
           T+HI PT DN+  A   +      +    GF  VT+
Sbjct: 67  TVHIPPTPDNQPMAGKAEEQYVSNSIFTGGFNSVTR 102


>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase.  catalyzes the
           formation of phosphoenolpyruvate by decarboxylation of
           oxaloacetate.
          Length = 586

 Score = 25.6 bits (57), Expect = 9.0
 Identities = 5/21 (23%), Positives = 13/21 (61%)

Query: 17  YLMKADNIKKWFSKEPGNLPN 37
           +L + + I+K++ +   +LP 
Sbjct: 550 WLQEVERIEKYYEEFGDDLPK 570


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0820    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,500,366
Number of extensions: 424586
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 12
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)