RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6030
         (118 letters)



>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
           modeling,de novo modeling,ribos proteins,novel ribosomal
           proteins, ribosome; 5.50A {Triticum aestivum} PDB:
           3izr_B 2zkr_a
          Length = 261

 Score = 73.3 bits (179), Expect = 5e-18
 Identities = 7/113 (6%), Positives = 14/113 (12%), Gaps = 7/113 (6%)

Query: 2   VSSHLIWNIVKNNNAYLMK---ADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
           V             ++          +     E                       + T 
Sbjct: 4   VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTF 63

Query: 59  DNKGFACVTKRATKKPTADNKGFACVTK----RATKKTLSGHVDIGSARMDAR 107
            +       K           G           +    L        A +   
Sbjct: 64  RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNV 116


>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation
           factor 6, EIF6, transla large ribosomal subunit, rRNA;
           3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O
           4a1d_O
          Length = 134

 Score = 69.4 bits (169), Expect = 1e-16
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 4   SHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGF 63
           S L+W IVKNNNA+L+K + +   F+ +P ++    +    G  H   + ++     +  
Sbjct: 2   SQLVWEIVKNNNAFLVKNNGVA--FTTDPFSVTGRNTQVGLGFTHRHGVALKG-GAKQAI 58

Query: 64  ACVTKRATKKPTADNKGFACVTK------RATKKTLSGHVDIGSARMDAR 107
           A   ++               T       +   K + G       +  A 
Sbjct: 59  ATSLRKNQSHKVKKTGTIEAETLTVKGGVQRVAKVIRGRFQSKGLKQFAL 108


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.70
 Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 4/21 (19%)

Query: 23 NIKKWFSK----EPGNLPNLA 39
           +KK  +        + P LA
Sbjct: 21 ALKKLQASLKLYADDSAPALA 41


>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
           mutation, glycolysis, nucleotide-binding, transfera;
           HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
           3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
           3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
           1v4t_A*
          Length = 470

 Score = 25.0 bits (54), Expect = 7.5
 Identities = 4/19 (21%), Positives = 8/19 (42%)

Query: 14  NNAYLMKADNIKKWFSKEP 32
           N  Y+ +  N++     E 
Sbjct: 236 NACYMEEMQNVELVEGDEG 254


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,609,362
Number of extensions: 75379
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)