RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6030
         (118 letters)



>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId:
          6421]}
          Length = 65

 Score = 25.3 bits (55), Expect = 0.85
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 53 HIQPTADNKGFACVTKRATKKPTADNKG 80
               ++ KG  CVT   T KP + N G
Sbjct: 27 KCILGSNGKGNQCVTGEGTPKPESHNNG 54


>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
          (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 262

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 14 NNAYLMKADNIKKWFSKEPGNLP 36
          N AY     +I+K   K   ++P
Sbjct: 13 NGAYYDVCSDIEKLQGKLSDDIP 35


>d2gria1 d.15.14.1 (A:1-112) Nsp3 {SARS coronavirus [TaxId: 227859]}
          Length = 112

 Score = 24.0 bits (52), Expect = 4.0
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 7/38 (18%)

Query: 81  FACVTKRATKKTLSGHVDIGSAR-------MDARLYIF 111
           FACV   A  KTL    D+ +           A  Y+F
Sbjct: 54  FACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATFYLF 91


>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 243

 Score = 24.4 bits (53), Expect = 4.5
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 14 NNAYLMKADNIKKWFSKE 31
          N  Y+ +  N++     E
Sbjct: 13 NACYMEEMQNVELVEGDE 30


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
          mansoni) [TaxId: 6183]}
          Length = 237

 Score = 23.7 bits (51), Expect = 8.1
 Identities = 3/14 (21%), Positives = 7/14 (50%)

Query: 14 NNAYLMKADNIKKW 27
          N AY+  +  ++  
Sbjct: 13 NVAYIEDSSKVELM 26


>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 23.3 bits (50), Expect = 8.9
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 14 NNAYLMKADNIKKWFSKEPGNLPN 37
          N  Y+ +  N++     +     N
Sbjct: 13 NACYMEEMKNVEMVEGDQGQMCIN 36


>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 23.3 bits (50), Expect = 9.5
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 14 NNAYLMKADNIKKWFSKE 31
          N  Y+ +  +I      E
Sbjct: 13 NACYMEELRHIDLVEGDE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,307
Number of extensions: 14597
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)