BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6031
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 117 KMESMVDVTLKAEGEAFQAHRIILSASSPFF-QEILSPIENDCHPIVILADVPANDVKAI 175
K + + DVTL E + F+AHR +L+A S +F Q ++ +ND + + +V A +
Sbjct: 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDL-VVSLPEEVTARGFGPL 86
Query: 176 LEFIYYGEIKVEGANIFSVLKTAQNLKISAL 206
L+F Y ++ + NI V++ A+ L++ L
Sbjct: 87 LQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVIL-ADVPANDVKAILEFIYY 181
DV++ +G AF+AHR +L+ASS +F+++ + N +V L A V + IL F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFN---NSRSAVVELPAAVQPQSFQQILSFCYT 91
Query: 182 GEIKVEGANIFSVLKTAQNLKISALLE 208
G + + + ++ TA L+I ++E
Sbjct: 92 GRLSMNVGDQDLLMYTAGFLQIQEIME 118
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFI 179
+ DV + EG F HR +L+A S +F+++ S D + + V A + A+++F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 180 YYGEIKVEGANIFSVLKTAQNLKISAL 206
Y + V AN+ +L A+ L+I A+
Sbjct: 85 YTATLTVSTANVGDILSAARLLEIPAV 111
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFI 179
+ DV + EG F HR +L+A S +F+++ S D + + V A + A+++F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 180 YYGEIKVEGANIFSVLKTAQNLKISAL 206
Y + V AN+ +L A+ L+I A+
Sbjct: 95 YTATLTVSTANVGDILSAARLLEIPAV 121
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 98 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIEND 157
C+++ + L +L + + DV + E F+AH+ +L A S F I + +
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD-QLK 67
Query: 158 CHPIVILADVPAN--DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208
C+ VI D N +L+F+Y + + NI +V+ TA L++ +++
Sbjct: 68 CNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 105 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVI 163
+ LA EL L + D L G+ FQAH+ IL+A SP F + +E V
Sbjct: 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 217
Query: 164 LADVPANDVKAILEFIYYGE 183
+ DV K ++ FIY G+
Sbjct: 218 INDVEPEVFKEMMCFIYTGK 237
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 117 KMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAIL 176
K + + DVT+ EG+ F+AHR +L+A S +F + + I + +V + ++
Sbjct: 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLI 84
Query: 177 EFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+F Y ++ + N+ V K + L + + E+
Sbjct: 85 QFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 123 DVTL---KAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVI----LADVPA---NDV 172
D+TL A G F+AHR +L+A++ +F +LS ++ + + P + V
Sbjct: 52 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTV 111
Query: 173 KAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208
+A++E++Y G I+V ++ VL+ A + L E
Sbjct: 112 EAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKE 147
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 105 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVI 163
+ LA EL L + D L G+ FQAH+ IL+A SP F + +E V
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 68
Query: 164 LADVPANDVKAILEFIYYGE 183
+ DV K ++ FIY G+
Sbjct: 69 INDVEPEVFKEMMCFIYTGK 88
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 107 HLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILAD 166
H+ +L Q ++ + D T +G F+AH+ +L+A S +F+ + D +V L
Sbjct: 13 HVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV----DQKDVVHLDI 68
Query: 167 VPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
A + +LEF+Y ++ + N+ VL A L++ ++ A
Sbjct: 69 SNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 107 HLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILAD 166
H+ +L Q ++ + D T +G F+AH+ +L+A S +F+ + D +V L
Sbjct: 11 HVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV----DQKDVVHLDI 66
Query: 167 VPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
A + +LEF+Y ++ + N+ VL A L++ ++ A
Sbjct: 67 SNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 109
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 117 KMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVIL-ADVPANDVKAI 175
K + + DVT+ EG+ F+AHR +L+A S +F + + D V L +V + +
Sbjct: 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG-QTDAELTVTLPEEVTVKGFEPL 90
Query: 176 LEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
++F Y ++ + N+ V + + L + + E+
Sbjct: 91 IQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
EL + + D TL G F+AH +L+ S FFQ I + V+L A
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYG---DGTGGSVVLPAGFAE 71
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKI 203
+L+F Y G + + N VL A+ L++
Sbjct: 72 IFGLLLDFFYTGHLALTSGNRDQVLLAAKELRV 104
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYG 182
DVT+ E F+AH+ ILSASS +F ++ S +V L+ + A IL +IY
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSV----AGQVVELSFIRAEIFAEILNYIYSS 90
Query: 183 EI-KVEGANIFSVLKTAQNLKISALLE 208
+I +V + ++K+ Q L + + E
Sbjct: 91 KIVRVRSDLLDELIKSGQLLGVKFIAE 117
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 121 MVDVTL---KAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVI----LADVPA---N 170
D+TL A G F+AHR +L+A++ +F +LS ++ + + P +
Sbjct: 32 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPD 91
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208
V+A++E+ Y G I+V ++ VL+ A + L E
Sbjct: 92 TVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKE 129
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFI 179
+ D T+ F+AHR +L++ S +F I S EN+ + + V A+ + +LEFI
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENN--VFLDQSQVKADGFQKLLEFI 79
Query: 180 YYGEIKVEGANIFSVLKTAQNLKI 203
Y G + ++ N+ + + A LK+
Sbjct: 80 YTGTLNLDSWNVKEIHQAADYLKV 103
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYG 182
DVT+ E F+AH+ ILSASS +F ++ S +V L+ + A IL +IY
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSV----AGQVVELSFIRAEIFAEILNYIYSS 88
Query: 183 EI-KVEGANIFSVLKTAQNLKI 203
+I +V + ++K+ Q L +
Sbjct: 89 KIVRVRSDLLDELIKSGQLLGV 110
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 99 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDC 158
M + V + EL + + D TL G F+AH +L+ S FFQ +
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS 61
Query: 159 HPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKI 203
V+L A +L+F Y G + + N VL A+ L++
Sbjct: 62 ---VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 105 QVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVI 163
+ LA EL L + D L G+ FQAH+ IL+A SP F E V
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVE 77
Query: 164 LADVPANDVKAILEFIYYGE 183
+ DV K FIY G+
Sbjct: 78 INDVEPEVFKEXXCFIYTGK 97
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 123 DVTLKAEGEAFQAHRIILSASSPFFQEIL--SPIENDCHPIVI-LADVPANDVKAILEFI 179
D L +GE + IL+A+SP+ + L +P ++D I L + ++ IL++I
Sbjct: 49 DAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYI 108
Query: 180 YYGEIKVEGANIFSVLKTA 198
+ G+I++ I V++ A
Sbjct: 109 FSGQIRLNEDTIQDVVQAA 127
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 124 VTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKA 174
V L E FQ+ +I + S F QE+ + + H +V + VP D KA
Sbjct: 11 VDLGTENLYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA 61
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEIL--SPIENDCHPIVI-LADVPANDVKAILE 177
D L +GE + IL+A+SP+ + L +P ++D I L + + IL+
Sbjct: 31 FCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILD 90
Query: 178 FIYYGEIKVEGANIFSVLKTA 198
+I+ G+I++ I V++ A
Sbjct: 91 YIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEIL--SPIENDCHPIVI-LADVPANDVKAILE 177
D L +GE + IL+A+SP+ + L +P ++D I L + + IL+
Sbjct: 31 FCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILD 90
Query: 178 FIYYGEIKVEGANIFSVLKTA 198
+I+ G+I++ I V++ A
Sbjct: 91 YIFSGQIRLNEDTIQDVVQAA 111
>pdb|1Y7Q|A Chain A, Mammalian Scan Domain Dimer Is A Domain-Swapped Homologue
Of The Hiv Capsid C-Terminal Domain
pdb|1Y7Q|B Chain B, Mammalian Scan Domain Dimer Is A Domain-Swapped Homologue
Of The Hiv Capsid C-Terminal Domain
Length = 98
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 90 AITTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQE 149
A++ C +W ++H ++ +LL ME + + L E +A HR ++S+ +E
Sbjct: 29 ALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTI-LPEEIQARVRHRCLMSS-----KE 82
Query: 150 ILSPIEN 156
I++ +E+
Sbjct: 83 IVTLVED 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,989,488
Number of Sequences: 62578
Number of extensions: 234987
Number of successful extensions: 559
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 24
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)