Query psy6031
Match_columns 209
No_of_seqs 208 out of 1387
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:46:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.8 7.2E-22 1.6E-26 185.0 2.2 106 102-209 6-114 (557)
2 KOG4441|consensus 99.8 1.3E-21 2.8E-26 183.6 3.1 113 97-209 12-125 (571)
3 PF00651 BTB: BTB/POZ domain; 99.8 5.7E-20 1.2E-24 136.0 3.2 97 112-208 1-101 (111)
4 PHA02790 Kelch-like protein; P 99.8 1E-19 2.2E-24 167.7 4.2 99 109-209 10-111 (480)
5 KOG4350|consensus 99.7 1.9E-18 4E-23 152.8 0.9 105 104-208 27-135 (620)
6 PHA03098 kelch-like protein; P 99.7 2.3E-18 4.9E-23 159.9 1.3 88 118-208 6-95 (534)
7 smart00225 BTB Broad-Complex, 99.7 2.5E-17 5.4E-22 115.5 1.6 86 123-208 1-87 (90)
8 KOG2075|consensus 99.5 4.9E-15 1.1E-19 133.2 1.9 112 97-208 90-207 (521)
9 KOG4591|consensus 99.3 3.4E-13 7.3E-18 109.9 0.9 104 103-208 48-156 (280)
10 KOG0783|consensus 98.7 2.4E-08 5.1E-13 95.5 5.6 77 108-184 541-634 (1267)
11 KOG4682|consensus 98.6 2.9E-08 6.3E-13 88.4 3.7 96 111-207 59-159 (488)
12 KOG0783|consensus 98.4 6.2E-08 1.3E-12 92.7 1.1 85 123-208 712-805 (1267)
13 KOG2838|consensus 98.2 4.7E-07 1E-11 77.4 1.0 100 104-203 113-218 (401)
14 KOG2838|consensus 97.5 2.3E-05 5.1E-10 67.2 -0.4 81 106-186 220-328 (401)
15 PF02214 BTB_2: BTB/POZ domain 97.2 0.0001 2.3E-09 53.1 0.2 82 124-206 1-89 (94)
16 KOG2716|consensus 97.2 0.00025 5.4E-09 59.7 2.5 84 124-208 7-95 (230)
17 smart00512 Skp1 Found in Skp1 96.8 0.00042 9.2E-09 51.1 0.7 79 124-203 4-104 (104)
18 KOG0511|consensus 96.5 0.00033 7.2E-09 62.6 -2.2 73 131-204 301-378 (516)
19 KOG3473|consensus 96.4 0.0033 7.2E-08 45.9 3.2 79 124-203 19-112 (112)
20 KOG0511|consensus 96.3 0.0004 8.7E-09 62.1 -2.5 96 110-206 135-234 (516)
21 PF03931 Skp1_POZ: Skp1 family 96.0 0.006 1.3E-07 40.8 2.6 56 124-181 3-59 (62)
22 PF11822 DUF3342: Domain of un 95.1 0.0067 1.5E-07 53.3 0.5 78 131-208 14-94 (317)
23 KOG1665|consensus 94.9 0.036 7.8E-07 46.7 4.0 85 124-208 11-101 (302)
24 KOG2714|consensus 94.5 0.032 6.9E-07 50.8 3.1 85 124-208 13-102 (465)
25 KOG1987|consensus 94.2 0.011 2.3E-07 51.1 -0.5 78 130-207 109-190 (297)
26 KOG2715|consensus 91.6 0.29 6.3E-06 39.5 4.2 85 123-207 22-111 (210)
27 KOG3840|consensus 89.0 0.6 1.3E-05 41.1 4.2 86 119-204 93-185 (438)
28 KOG1724|consensus 84.4 0.28 6E-06 39.3 -0.2 79 129-208 13-117 (162)
29 COG5201 SKP1 SCF ubiquitin lig 83.8 0.35 7.6E-06 37.3 0.1 79 128-208 9-112 (158)
30 KOG2723|consensus 60.5 12 0.00027 31.4 3.8 86 121-207 7-99 (221)
31 KOG1778|consensus 57.8 2.9 6.4E-05 37.0 -0.4 59 124-182 29-88 (319)
32 KOG3863|consensus 42.1 5.5 0.00012 38.2 -1.2 37 111-152 4-40 (604)
33 PF09593 Pathogen_betaC1: Beta 40.5 58 0.0013 24.7 4.3 59 123-183 15-76 (117)
34 PF01466 Skp1: Skp1 family, di 23.2 14 0.0003 25.5 -1.5 23 186-208 11-33 (78)
35 PF10905 DUF2695: Protein of u 20.5 78 0.0017 20.5 1.7 20 109-128 33-52 (53)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.83 E-value=7.2e-22 Score=184.97 Aligned_cols=106 Identities=26% Similarity=0.433 Sum_probs=97.3
Q ss_pred ccchhhhHHHHHHHhhhcceeeeeeecc-cccceeeeeeeecCChhhHhhhc-cccCC-CcceEEeecCCcchHHHHHhh
Q psy6031 102 QNFQVHLAFELYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQEILS-PIEND-CHPIVILADVPANDVKAILEF 178 (209)
Q Consensus 102 ~~~~~~l~~~l~~l~~~~~~~DV~l~v~-~~~f~aHr~VLaa~S~yFr~~f~-~~~e~-~~~~I~l~~v~~~~f~~lL~f 178 (209)
..|...++..|++||+++.+|||+|.++ |++|+|||.|||++|+||++||+ ++++. ...+|.|.++++++|+.+|+|
T Consensus 6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y 85 (557)
T PHA02713 6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY 85 (557)
T ss_pred hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence 4688999999999999999999999997 89999999999999999999994 55655 478899999999999999999
Q ss_pred hhcceeeeecccchhhhhhcccccccccccC
Q psy6031 179 IYYGEIKVEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 179 iYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
+|||+ ++.+++++||.+|++|+++.|+++
T Consensus 86 ~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~ 114 (557)
T PHA02713 86 LYNRH--ISSMNVIDVLKCADYLLIDDLVTD 114 (557)
T ss_pred hcCCC--CCHHHHHHHHHHHHHHCHHHHHHH
Confidence 99997 678999999999999999998753
No 2
>KOG4441|consensus
Probab=99.83 E-value=1.3e-21 Score=183.60 Aligned_cols=113 Identities=25% Similarity=0.424 Sum_probs=106.7
Q ss_pred eeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEeecCCcchHHHH
Q psy6031 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAI 175 (209)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~~v~~~~f~~l 175 (209)
..+....|...+++.|+.+|+.+.+|||++.+++++|+|||.||||+|+||++|| .+.+|..+.+|.|.++++.+++.+
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~l 91 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELL 91 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHH
Confidence 3456678999999999999999999999999999999999999999999999999 567899999999999999999999
Q ss_pred HhhhhcceeeeecccchhhhhhcccccccccccC
Q psy6031 176 LEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 176 L~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
++|+|||++.++.+++++|+.+|++|||+.++++
T Consensus 92 l~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~ 125 (571)
T KOG4441|consen 92 LDYAYTGKLEISEDNVQELLEAASLLQIPEVVDA 125 (571)
T ss_pred HHHhhcceEEechHhHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999988753
No 3
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.78 E-value=5.7e-20 Score=135.99 Aligned_cols=97 Identities=32% Similarity=0.599 Sum_probs=85.7
Q ss_pred HHHHhhhcceeeeeeecc-cccceeeeeeeecCChhhHhhhccc--cCCCcceEEeecCCcchHHHHHhhhhcceeeee-
Q psy6031 112 LYQLLKMESMVDVTLKAE-GEAFQAHRIILSASSPFFQEILSPI--ENDCHPIVILADVPANDVKAILEFIYYGEIKVE- 187 (209)
Q Consensus 112 l~~l~~~~~~~DV~l~v~-~~~f~aHr~VLaa~S~yFr~~f~~~--~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~- 187 (209)
|+++++++.++|++|.++ +..|+|||.||+++|+||+.+|.+. .+....+|.++++++++|+.+++|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578999999999999999 7999999999999999999999544 344455799999999999999999999999998
Q ss_pred cccchhhhhhccccccccccc
Q psy6031 188 GANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 188 ~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
.+++.+++.+|++|+++.|++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~ 101 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKK 101 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999875
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.78 E-value=1e-19 Score=167.66 Aligned_cols=99 Identities=14% Similarity=0.263 Sum_probs=86.1
Q ss_pred HHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEe--ecCCcchHHHHHhhhhcceee
Q psy6031 109 AFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVIL--ADVPANDVKAILEFIYYGEIK 185 (209)
Q Consensus 109 ~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l--~~v~~~~f~~lL~fiYtg~i~ 185 (209)
.+.+-.++..+.+|||++.+| +.|+|||+|||++|+|||+|| ++++|+.. +|.+ .++++++++.+|+|+|||++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 345667888999999998865 589999999999999999999 46666644 5655 389999999999999999999
Q ss_pred eecccchhhhhhcccccccccccC
Q psy6031 186 VEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 186 ~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
++.+|+++||.+|++||++.++++
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~ 111 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYT 111 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHH
Confidence 999999999999999999988753
No 5
>KOG4350|consensus
Probab=99.70 E-value=1.9e-18 Score=152.75 Aligned_cols=105 Identities=26% Similarity=0.466 Sum_probs=95.3
Q ss_pred chhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEeecCCcchHHHHHhhhhcc
Q psy6031 104 FQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFIYYG 182 (209)
Q Consensus 104 ~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg 182 (209)
.+..+.+.+.+++-+.+++||+|+|++++|+|||+|||+||.|||+|+ +++.|+.+..|.|.+...++|+.+|+|||||
T Consensus 27 i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg 106 (620)
T KOG4350|consen 27 ISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTG 106 (620)
T ss_pred hccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhc
Confidence 345557888999999999999999999999999999999999999999 7888999999999999999999999999999
Q ss_pred eeee---ecccchhhhhhccccccccccc
Q psy6031 183 EIKV---EGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 183 ~i~~---~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
++.+ .++.+.+.|.+|++|++++|..
T Consensus 107 ~~~l~~~~ed~lld~LslAh~Ygf~~Le~ 135 (620)
T KOG4350|consen 107 KIDLAGVEEDILLDYLSLAHRYGFIQLET 135 (620)
T ss_pred ceecccchHHHHHHHHHHHHhcCcHHHHH
Confidence 9985 4556899999999999998864
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.70 E-value=2.3e-18 Score=159.92 Aligned_cols=88 Identities=24% Similarity=0.446 Sum_probs=81.5
Q ss_pred hcceeeeeeec--ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcceeeeecccchhhh
Q psy6031 118 MESMVDVTLKA--EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVL 195 (209)
Q Consensus 118 ~~~~~DV~l~v--~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll 195 (209)
++.+|||+|.+ +|++|+|||.||+++|+||++||.+... ..+|.|.+ ++++|+.+|+|+|||++.++.+++.+|+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll 82 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDIL 82 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHH
Confidence 78899999998 9999999999999999999999954322 67899999 9999999999999999999999999999
Q ss_pred hhccccccccccc
Q psy6031 196 KTAQNLKISALLE 208 (209)
Q Consensus 196 ~~A~~l~i~~L~~ 208 (209)
.+|++|+++.|++
T Consensus 83 ~~A~~l~~~~l~~ 95 (534)
T PHA03098 83 SIANYLIIDFLIN 95 (534)
T ss_pred HHHHHhCcHHHHH
Confidence 9999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=2.5e-17 Score=115.50 Aligned_cols=86 Identities=36% Similarity=0.663 Sum_probs=78.4
Q ss_pred eeeeecccccceeeeeeeecCChhhHhhhcc-ccCCCcceEEeecCCcchHHHHHhhhhcceeeeecccchhhhhhcccc
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSP-IENDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNL 201 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~-~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l 201 (209)
|+++.++|+.|++||.+|+++|+||+.||.. ..+.....|.++++++.+|+.+|+|+|++++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999953 334467789999999999999999999999999999999999999999
Q ss_pred ccccccc
Q psy6031 202 KISALLE 208 (209)
Q Consensus 202 ~i~~L~~ 208 (209)
+++.|.+
T Consensus 81 ~~~~l~~ 87 (90)
T smart00225 81 QIPGLVE 87 (90)
T ss_pred CcHHHHh
Confidence 9999875
No 8
>KOG2075|consensus
Probab=99.50 E-value=4.9e-15 Score=133.21 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=102.3
Q ss_pred eeeeeccchhhhHHHHHHHhhhcceeeeeeeccc-----ccceeeeeeeecCChhhHhhhc-cccCCCcceEEeecCCcc
Q psy6031 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEG-----EAFQAHRIILSASSPFFQEILS-PIENDCHPIVILADVPAN 170 (209)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~-----~~f~aHr~VLaa~S~yFr~~f~-~~~e~~~~~I~l~~v~~~ 170 (209)
..+.|+.....+......++++...+||.|+|++ +.++|||.|||..|.+|.+||. +..+....+|.++||.+.
T Consensus 90 ~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepa 169 (521)
T KOG2075|consen 90 GIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPA 169 (521)
T ss_pred cCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChh
Confidence 4567888889999999999999999999999973 7899999999999999999994 444555889999999999
Q ss_pred hHHHHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 171 ~f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+|..+|+|+|++++.+..+++..+|.+|++|.++.|.+
T Consensus 170 aFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer 207 (521)
T KOG2075|consen 170 AFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALER 207 (521)
T ss_pred HhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999875
No 9
>KOG4591|consensus
Probab=99.32 E-value=3.4e-13 Score=109.95 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=89.2
Q ss_pred cchhhhHHHHHHHhhhcceeeeeeecc---cccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhh
Q psy6031 103 NFQVHLAFELYQLLKMESMVDVTLKAE---GEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFI 179 (209)
Q Consensus 103 ~~~~~l~~~l~~l~~~~~~~DV~l~v~---~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fi 179 (209)
.+.+.++.....+++...++|++|.++ ++.++|||.|||+||++.+ |.+.......+..++|+++++|...++||
T Consensus 48 SF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 48 SFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred hHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheee
Confidence 467889999999999999999999997 4789999999999999876 43332445667788999999999999999
Q ss_pred hcceeeeeccc--chhhhhhccccccccccc
Q psy6031 180 YYGEIKVEGAN--IFSVLKTAQNLKISALLE 208 (209)
Q Consensus 180 Ytg~i~~~~~~--v~~Ll~~A~~l~i~~L~~ 208 (209)
||+++++..+. +.++.++|..|+++.|++
T Consensus 126 YTDEidfk~dD~~L~el~e~An~FqLe~Lke 156 (280)
T KOG4591|consen 126 YTDEIDFKEDDEFLLELCELANRFQLELLKE 156 (280)
T ss_pred eccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999976655 789999999999988864
No 10
>KOG0783|consensus
Probab=98.68 E-value=2.4e-08 Score=95.47 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=58.2
Q ss_pred hHHHHHHHhh----hcceeeeeeecccccceeeeeeeecCChhhHhhhcc-ccCC------------CcceEEeecCCcc
Q psy6031 108 LAFELYQLLK----MESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSP-IEND------------CHPIVILADVPAN 170 (209)
Q Consensus 108 l~~~l~~l~~----~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~-~~e~------------~~~~I~l~~v~~~ 170 (209)
+...+.++.. ...+.||+|.||+..|+|||+||++||++||.+|.. ...+ ....|.+.+++|.
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~ 620 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPL 620 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHH
Confidence 4444555543 345679999999999999999999999999999922 1111 1123557789999
Q ss_pred hHHHHHhhhhccee
Q psy6031 171 DVKAILEFIYYGEI 184 (209)
Q Consensus 171 ~f~~lL~fiYtg~i 184 (209)
.|+.+|.||||+..
T Consensus 621 mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 621 MFEILLHYIYTDTL 634 (1267)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999999854
No 11
>KOG4682|consensus
Probab=98.60 E-value=2.9e-08 Score=88.39 Aligned_cols=96 Identities=20% Similarity=0.338 Sum_probs=84.3
Q ss_pred HHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEee----cCCcchHHHHHhhhhcceee
Q psy6031 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILA----DVPANDVKAILEFIYYGEIK 185 (209)
Q Consensus 111 ~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~----~v~~~~f~~lL~fiYtg~i~ 185 (209)
..+.++.+|..+||++.+-|.+++.||.-|. .|+||++|| +...|+....|.|. .|+.++|..++.-+|.++++
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 3466788999999999999999999999995 688999999 55667777766553 49999999999999999999
Q ss_pred eecccchhhhhhcccccccccc
Q psy6031 186 VEGANIFSVLKTAQNLKISALL 207 (209)
Q Consensus 186 ~~~~~v~~Ll~~A~~l~i~~L~ 207 (209)
|..+.+..++.+|.+++++.|.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~ 159 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLI 159 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999998875
No 12
>KOG0783|consensus
Probab=98.43 E-value=6.2e-08 Score=92.66 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=63.0
Q ss_pred eeeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCC--cchHHHHHhhhhc-ceeee-----ecccchh
Q psy6031 123 DVTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVP--ANDVKAILEFIYY-GEIKV-----EGANIFS 193 (209)
Q Consensus 123 DV~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~--~~~f~~lL~fiYt-g~i~~-----~~~~v~~ 193 (209)
|+.|.+ +|+.++||+++|++|.+||..||... +.....|.+.+++ .+.+..+|+|+|+ ++..+ ..+-+.+
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~-w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~ 790 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFV-WMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFE 790 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHH-HhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHH
Confidence 555555 77889999999999999999999432 2233346666655 8999999999994 44432 2233678
Q ss_pred hhhhccccccccccc
Q psy6031 194 VLKTAQNLKISALLE 208 (209)
Q Consensus 194 Ll~~A~~l~i~~L~~ 208 (209)
++.+||.|-+.+|++
T Consensus 791 il~iaDqlli~~Lk~ 805 (1267)
T KOG0783|consen 791 ILSIADQLLILELKS 805 (1267)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888874
No 13
>KOG2838|consensus
Probab=98.18 E-value=4.7e-07 Score=77.40 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=74.6
Q ss_pred chhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcc---eEEeecCCcchHHHHHhhhh
Q psy6031 104 FQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHP---IVILADVPANDVKAILEFIY 180 (209)
Q Consensus 104 ~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~---~I~l~~v~~~~f~~lL~fiY 180 (209)
....+++.+...++.....|+-|+.....|+|||++|++||++|+.+.....+.... .|..-+++.+.|+++|.|+|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 345667777777777778899999999999999999999999999988544233222 34555799999999999999
Q ss_pred cceeee---ecccchhhhhhcccccc
Q psy6031 181 YGEIKV---EGANIFSVLKTAQNLKI 203 (209)
Q Consensus 181 tg~i~~---~~~~v~~Ll~~A~~l~i 203 (209)
+|+.-. ..+++.-|-+++.-|+.
T Consensus 193 tgEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 193 TGEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred hcccchhhcCCchHHHHHHHHHhhCC
Confidence 998653 33445555566655554
No 14
>KOG2838|consensus
Probab=97.47 E-value=2.3e-05 Score=67.19 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhhhcceeeeeee-c-cc--------------ccceeeeeeeecCChhhHhhh----ccccC------CCc
Q psy6031 106 VHLAFELYQLLKMESMVDVTLK-A-EG--------------EAFQAHRIILSASSPFFQEIL----SPIEN------DCH 159 (209)
Q Consensus 106 ~~l~~~l~~l~~~~~~~DV~l~-v-~~--------------~~f~aHr~VLaa~S~yFr~~f----~~~~e------~~~ 159 (209)
..|-..++.+++..-..|+.|. + +| .+++||++|.++||++||.++ +...+ ...
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 3444555566655544454443 2 32 369999999999999999998 22212 223
Q ss_pred ceEEeec-CCcchH-HHHHhhhhcceeee
Q psy6031 160 PIVILAD-VPANDV-KAILEFIYYGEIKV 186 (209)
Q Consensus 160 ~~I~l~~-v~~~~f-~~lL~fiYtg~i~~ 186 (209)
.+|.+++ +=|..| -.+|.|+||+.+.+
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDl 328 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDL 328 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccch
Confidence 4677776 444444 47899999988764
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.16 E-value=0.0001 Score=53.08 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=61.5
Q ss_pred eeeecccccceeeeeeee-cCChhhHhhhcc----ccCCCcceEEeecCCcchHHHHHhhhhc-ceeeee-cccchhhhh
Q psy6031 124 VTLKAEGEAFQAHRIILS-ASSPFFQEILSP----IENDCHPIVILADVPANDVKAILEFIYY-GEIKVE-GANIFSVLK 196 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLa-a~S~yFr~~f~~----~~e~~~~~I~l~~v~~~~f~~lL~fiYt-g~i~~~-~~~v~~Ll~ 196 (209)
|.|.|||+.|.+-+..|. ....+|..++.. .......++-+ |-+|..|+.||+|+-+ +.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 556789999943 22334456655 6799999999999999 666654 456888999
Q ss_pred hccccccccc
Q psy6031 197 TAQNLKISAL 206 (209)
Q Consensus 197 ~A~~l~i~~L 206 (209)
-|++|+++.|
T Consensus 80 Ea~fy~l~~l 89 (94)
T PF02214_consen 80 EAEFYGLDEL 89 (94)
T ss_dssp HHHHHT-HHH
T ss_pred HHHHcCCCcc
Confidence 9999999987
No 16
>KOG2716|consensus
Probab=97.16 E-value=0.00025 Score=59.70 Aligned_cols=84 Identities=21% Similarity=0.397 Sum_probs=68.2
Q ss_pred eeeecccccceeeeeeeecCChhhHhhhcccc--C-CCcceEEeecCCcchHHHHHhhhhcceeeeec--ccchhhhhhc
Q psy6031 124 VTLKAEGEAFQAHRIILSASSPFFQEILSPIE--N-DCHPIVILADVPANDVKAILEFIYYGEIKVEG--ANIFSVLKTA 198 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~--e-~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~--~~v~~Ll~~A 198 (209)
|.+.|||..|...+.-|.-...+|+.|+...- + .....|-+ |-+|.-|..+|.||-.|.+.++. ..+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 56789999999999999999999999994331 2 22233444 66999999999999988887654 4588999999
Q ss_pred cccccccccc
Q psy6031 199 QNLKISALLE 208 (209)
Q Consensus 199 ~~l~i~~L~~ 208 (209)
.+|.++.|.+
T Consensus 86 ~fYlL~~Lv~ 95 (230)
T KOG2716|consen 86 EFYLLDGLVE 95 (230)
T ss_pred HHhhHHHHHH
Confidence 9999999874
No 17
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.80 E-value=0.00042 Score=51.07 Aligned_cols=79 Identities=16% Similarity=0.343 Sum_probs=58.0
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhcccc--CCCcceEEeecCCcchHHHHHhhhhccee-----------e----
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSPIE--NDCHPIVILADVPANDVKAILEFIYYGEI-----------K---- 185 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~--e~~~~~I~l~~v~~~~f~~lL~fiYtg~i-----------~---- 185 (209)
++++. +|..|.+.+.+. ..|..++.|+.... ......|.+++|+..+++.+++|++.-.- .
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45544 778899988875 68999999994321 12225899999999999999999974210 1
Q ss_pred ----eecccchhhhhhcccccc
Q psy6031 186 ----VEGANIFSVLKTAQNLKI 203 (209)
Q Consensus 186 ----~~~~~v~~Ll~~A~~l~i 203 (209)
++.+.+.+|+.||++|++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 333468899999999875
No 18
>KOG0511|consensus
Probab=96.46 E-value=0.00033 Score=62.60 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred ccceeeeeeeecCChhhHhhhc-cccCCC----cceEEeecCCcchHHHHHhhhhcceeeeecccchhhhhhccccccc
Q psy6031 131 EAFQAHRIILSASSPFFQEILS-PIENDC----HPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKIS 204 (209)
Q Consensus 131 ~~f~aHr~VLaa~S~yFr~~f~-~~~e~~----~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~ 204 (209)
.++|||+.+++ |++||+.||. ...++. .....++.....+++.+++|+|++..++.++-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 45999999985 5679999994 444422 2245667788899999999999999999999999999999888654
No 19
>KOG3473|consensus
Probab=96.41 E-value=0.0033 Score=45.93 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=59.5
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhcc---ccCCCcceEEeecCCcchHHHHHhhh-----hcce------eeeec
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSP---IENDCHPIVILADVPANDVKAILEFI-----YYGE------IKVEG 188 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~---~~e~~~~~I~l~~v~~~~f~~lL~fi-----Ytg~------i~~~~ 188 (209)
|.++. +|.+|-.-|-+ |.-|.-.|+||.+ ..+....++.+++++..+++.+.+|+ |++. .+++.
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 45554 45666655554 6779999999953 34566678999999999999999998 3443 34677
Q ss_pred ccchhhhhhcccccc
Q psy6031 189 ANIFSVLKTAQNLKI 203 (209)
Q Consensus 189 ~~v~~Ll~~A~~l~i 203 (209)
+.+.+||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 889999999999853
No 20
>KOG0511|consensus
Probab=96.30 E-value=0.0004 Score=62.05 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=66.9
Q ss_pred HHHHHHhhhcc---eeeeeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcceee
Q psy6031 110 FELYQLLKMES---MVDVTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGEIK 185 (209)
Q Consensus 110 ~~l~~l~~~~~---~~DV~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~ 185 (209)
.++..++++.. ..|+++.. .|..|-||+..|++||.+|..-+... +....+|.-..+-+..|..+++|+|-..-.
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~-~~~~heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMF-YVQGHEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhh-ccccCchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 34444444432 35888877 67788899999999999987665332 233445654567788999999999987433
Q ss_pred eecccchhhhhhccccccccc
Q psy6031 186 VEGANIFSVLKTAQNLKISAL 206 (209)
Q Consensus 186 ~~~~~v~~Ll~~A~~l~i~~L 206 (209)
+-.+...+|+.+..+|++..|
T Consensus 214 ~~~~qynallsi~~kF~~e~l 234 (516)
T KOG0511|consen 214 EWKDQYNALLSIEVKFSKEKL 234 (516)
T ss_pred hhhhHHHHHHhhhhhccHHHh
Confidence 444556778888888877655
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.99 E-value=0.006 Score=40.81 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=42.2
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhc
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYY 181 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYt 181 (209)
|+++. +|+.|.+.+.++ ..|..++.|+.+...... .|.+++|+...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHHh
Confidence 44444 778888888774 589999999954422222 799999999999999999974
No 22
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.14 E-value=0.0067 Score=53.30 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=65.1
Q ss_pred ccceeeeeeeecCChhhHhhhcc--ccCCCcceEEee-cCCcchHHHHHhhhhcceeeeecccchhhhhhcccccccccc
Q psy6031 131 EAFQAHRIILSASSPFFQEILSP--IENDCHPIVILA-DVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALL 207 (209)
Q Consensus 131 ~~f~aHr~VLaa~S~yFr~~f~~--~~e~~~~~I~l~-~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~ 207 (209)
+.|.|.+-+|-..=.||+..+.. .......+|+|. .-+-.+|+=+++|+......++..|+..+|.-+++|+|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 57999999999999999999943 113344456665 467889999999999988889999999999999999999987
Q ss_pred c
Q psy6031 208 E 208 (209)
Q Consensus 208 ~ 208 (209)
+
T Consensus 94 e 94 (317)
T PF11822_consen 94 E 94 (317)
T ss_pred H
Confidence 5
No 23
>KOG1665|consensus
Probab=94.85 E-value=0.036 Score=46.66 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=61.3
Q ss_pred eeeecccccceeeeeeeecCC--hhhHhhhcccc---CCCcceEEeecCCcchHHHHHhhhhcceee-eecccchhhhhh
Q psy6031 124 VTLKAEGEAFQAHRIILSASS--PFFQEILSPIE---NDCHPIVILADVPANDVKAILEFIYYGEIK-VEGANIFSVLKT 197 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S--~yFr~~f~~~~---e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~-~~~~~v~~Ll~~ 197 (209)
|.+.++|+.|..-.--|..+- ..+.+||.+.. +...+--.+=|-+|..|+.+|.|+-.|.+. .+.-++..+|+.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 566778888776666555553 46788884321 222222334467999999999999999987 455678999999
Q ss_pred ccccccccccc
Q psy6031 198 AQNLKISALLE 208 (209)
Q Consensus 198 A~~l~i~~L~~ 208 (209)
|++|++-.|++
T Consensus 91 Arff~i~sL~~ 101 (302)
T KOG1665|consen 91 ARFFQILSLKD 101 (302)
T ss_pred hhHHhhHhHHh
Confidence 99999988874
No 24
>KOG2714|consensus
Probab=94.51 E-value=0.032 Score=50.77 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=62.3
Q ss_pred eeeecccccceeeeeeeecCC--hhhHhhhccc-c-CCCcceEEeecCCcchHHHHHhhhhcceeeeecccchhhhh-hc
Q psy6031 124 VTLKAEGEAFQAHRIILSASS--PFFQEILSPI-E-NDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLK-TA 198 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S--~yFr~~f~~~-~-e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~-~A 198 (209)
|.|.|||+.|..-+.-|+... .+|-+++.+. . .....-+.+=|-+|+.|..+|.|+-||++.++......++- -|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 778899999998887775544 6888888432 1 12222233346799999999999999999986655555555 89
Q ss_pred cccccccccc
Q psy6031 199 QNLKISALLE 208 (209)
Q Consensus 199 ~~l~i~~L~~ 208 (209)
.+|++..|.+
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999988753
No 25
>KOG1987|consensus
Probab=94.20 E-value=0.011 Score=51.06 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=56.8
Q ss_pred cccceeeeeeeecCChhhHhhhcc-ccCCCcceEEeecCCcchHHHHHhhhhcceeeeecccch---hhhhhcccccccc
Q psy6031 130 GEAFQAHRIILSASSPFFQEILSP-IENDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIF---SVLKTAQNLKISA 205 (209)
Q Consensus 130 ~~~f~aHr~VLaa~S~yFr~~f~~-~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~---~Ll~~A~~l~i~~ 205 (209)
++.+.+|+.++++++++|+.++.. ........+.+.+.++..++.+..|.|+..-....+.+. .++.++..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 566999999999999999999943 223344455778899999999999999865433333332 5666777777766
Q ss_pred cc
Q psy6031 206 LL 207 (209)
Q Consensus 206 L~ 207 (209)
|+
T Consensus 189 lk 190 (297)
T KOG1987|consen 189 LK 190 (297)
T ss_pred HH
Confidence 65
No 26
>KOG2715|consensus
Probab=91.57 E-value=0.29 Score=39.47 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=64.6
Q ss_pred eeeeecccccceeeeeeeecCChhhHhhh-ccc--c--CCCcceEEeecCCcchHHHHHhhhhcceeeeecccchhhhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFFQEIL-SPI--E--NDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKT 197 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~--~--e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~~ 197 (209)
=|.+.|||..|-.-|.-|..-+.-|...| ... . .....--.+-|-+|..|..+|.|+-.|++-++.-.-..+|.-
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~E 101 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEE 101 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchh
Confidence 36677899999999999999987777666 221 1 112222344467999999999999999998877555679999
Q ss_pred cccccccccc
Q psy6031 198 AQNLKISALL 207 (209)
Q Consensus 198 A~~l~i~~L~ 207 (209)
|++|.++.|.
T Consensus 102 Aefyn~~~li 111 (210)
T KOG2715|consen 102 AEFYNDPSLI 111 (210)
T ss_pred hhccCChHHH
Confidence 9999999764
No 27
>KOG3840|consensus
Probab=88.97 E-value=0.6 Score=41.15 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=61.0
Q ss_pred cceeeeeeecccccceeeeeeeecCC-hhhHhhhcc-c---cCCCcceEEee-cCCcchHHHHHhhhhcceeeee-cccc
Q psy6031 119 ESMVDVTLKAEGEAFQAHRIILSASS-PFFQEILSP-I---ENDCHPIVILA-DVPANDVKAILEFIYYGEIKVE-GANI 191 (209)
Q Consensus 119 ~~~~DV~l~v~~~~f~aHr~VLaa~S-~yFr~~f~~-~---~e~~~~~I~l~-~v~~~~f~~lL~fiYtg~i~~~-~~~v 191 (209)
|.---++..+++..|-+-+.+|.+.- .-+-.||.. . +.....+.++. ++...+|+++|+|.-+|.+.-+ .-.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSv 172 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 172 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCch
Confidence 33335777788888988888887653 233455522 1 12333455554 6999999999999999998854 4468
Q ss_pred hhhhhhccccccc
Q psy6031 192 FSVLKTAQNLKIS 204 (209)
Q Consensus 192 ~~Ll~~A~~l~i~ 204 (209)
.+|-+++|+|.|+
T Consensus 173 pELrEACDYLlip 185 (438)
T KOG3840|consen 173 SELREACDYLLVP 185 (438)
T ss_pred HHHHhhcceEEee
Confidence 9999999999876
No 28
>KOG1724|consensus
Probab=84.36 E-value=0.28 Score=39.29 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=54.9
Q ss_pred ccccceeeeeeeecCChhhHhhhccc-cCCCcceEEeecCCcchHHHHHhhhhcceee----------------------
Q psy6031 129 EGEAFQAHRIILSASSPFFQEILSPI-ENDCHPIVILADVPANDVKAILEFIYYGEIK---------------------- 185 (209)
Q Consensus 129 ~~~~f~aHr~VLaa~S~yFr~~f~~~-~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~---------------------- 185 (209)
+|+.|.+-..+ +..|..+..++... .......|.|+.|....|..+++|+|--.-.
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 56666665554 45677777777322 1111157999999999999999999863211
Q ss_pred ---eecccchhhhhhccccccccccc
Q psy6031 186 ---VEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 186 ---~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
++..++.+|..+|++|.++.|.+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~ 117 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLD 117 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHH
Confidence 22346789999999999998864
No 29
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.78 E-value=0.35 Score=37.34 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=54.6
Q ss_pred cccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcceee----------------------
Q psy6031 128 AEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGEIK---------------------- 185 (209)
Q Consensus 128 v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~---------------------- 185 (209)
.+|..|.+.+.+ |-+|-..+.|+.....++- .|.++.|...+|..+++|+-..+-+
T Consensus 9 ~dge~F~vd~~i-AerSiLikN~l~d~~~~n~-p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~ 86 (158)
T COG5201 9 IDGEIFRVDENI-AERSILIKNMLCDSTACNY-PIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRF 86 (158)
T ss_pred cCCcEEEehHHH-HHHHHHHHHHhccccccCC-CCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHH
Confidence 366777776665 7788888888844433333 3666789999999999998643211
Q ss_pred ---eecccchhhhhhccccccccccc
Q psy6031 186 ---VEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 186 ---~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
++.+.+.++..+|++|.++.|.+
T Consensus 87 Fm~vDqemL~eI~laaNYL~ikpLLd 112 (158)
T COG5201 87 FMEVDQEMLLEICLAANYLEIKPLLD 112 (158)
T ss_pred HHHhhHHHHHHHHHhhccccchHHHH
Confidence 12234678889999999988764
No 30
>KOG2723|consensus
Probab=60.52 E-value=12 Score=31.38 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=51.2
Q ss_pred eeeee-eecccccceeeee-eeecCChhhHhhhccccC---CCcceEEeecCCcchHHHHHhhhhcceeeeec--ccchh
Q psy6031 121 MVDVT-LKAEGEAFQAHRI-ILSASSPFFQEILSPIEN---DCHPIVILADVPANDVKAILEFIYYGEIKVEG--ANIFS 193 (209)
Q Consensus 121 ~~DV~-l~v~~~~f~aHr~-VLaa~S~yFr~~f~~~~e---~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~--~~v~~ 193 (209)
+.|++ +-|||..|..-.. .++-.-..+.+||++... ......-| |=+...|+.||+|+=+..+.++. .++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 34444 4456654433222 233334455666753211 11112222 34667899999999996666655 66889
Q ss_pred hhhhcccccccccc
Q psy6031 194 VLKTAQNLKISALL 207 (209)
Q Consensus 194 Ll~~A~~l~i~~L~ 207 (209)
|...|++|+++.+.
T Consensus 86 L~rEA~f~~l~~~~ 99 (221)
T KOG2723|consen 86 LVREAEFFQLEAPV 99 (221)
T ss_pred HHHHHHHHccccHH
Confidence 99999999998543
No 31
>KOG1778|consensus
Probab=57.79 E-value=2.9 Score=37.04 Aligned_cols=59 Identities=22% Similarity=0.446 Sum_probs=44.7
Q ss_pred eeeecccccceeeeeeeecCChhhHhhhc-cccCCCcceEEeecCCcchHHHHHhhhhcc
Q psy6031 124 VTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVILADVPANDVKAILEFIYYG 182 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S~yFr~~f~-~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg 182 (209)
.++......+.+|+.+|+..|+.|..+.. .......+.+.+-.++...+..+.+++|..
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 34444557899999999999999988873 322334455677788889999999999987
No 32
>KOG3863|consensus
Probab=42.14 E-value=5.5 Score=38.16 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=32.2
Q ss_pred HHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhc
Q psy6031 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS 152 (209)
Q Consensus 111 ~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~ 152 (209)
.++..++...+||+++.+..+.|++|+ ++.||.....
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~ 40 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIV 40 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhhhhc
Confidence 456678888899999999999999999 8999988773
No 33
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=40.54 E-value=58 Score=24.66 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=37.0
Q ss_pred eeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEee-cC--CcchHHHHHhhhhcce
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILA-DV--PANDVKAILEFIYYGE 183 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~-~v--~~~~f~~lL~fiYtg~ 183 (209)
||.+. ++..+.+|--+++++||.+...-..- +-....|..| |+ -.+.....|+++|.|.
T Consensus 15 dVrl~-~~~~i~V~i~l~ST~sP~l~k~~f~I-pY~~~~ii~PFDFNglEe~I~~~l~~mY~~s 76 (117)
T PF09593_consen 15 DVRLM-EDMSIFVHIQLFSTRSPALIKKKFII-PYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS 76 (117)
T ss_pred EEEec-CCCEEEEEEEEEECCChHHheEEEEE-eccCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence 44444 67899999999999999885432000 1111222222 22 2466789999999874
No 34
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=23.20 E-value=14 Score=25.53 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=17.4
Q ss_pred eecccchhhhhhccccccccccc
Q psy6031 186 VEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 186 ~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
++.+.+.+|+.+|++|+|+.|.+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~ 33 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLD 33 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHH
Confidence 35567899999999999998864
No 35
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=20.54 E-value=78 Score=20.49 Aligned_cols=20 Identities=15% Similarity=-0.089 Sum_probs=15.9
Q ss_pred HHHHHHHhhhcceeeeeeec
Q psy6031 109 AFELYQLLKMESMVDVTLKA 128 (209)
Q Consensus 109 ~~~l~~l~~~~~~~DV~l~v 128 (209)
-+.+..+.++|-+||+.|..
T Consensus 33 ~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 33 EDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHHHcCCCcceeeec
Confidence 45667788899999998864
Done!