Query psy6031
Match_columns 209
No_of_seqs 208 out of 1387
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:46:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2if5_A Zinc finger and BTB dom 99.9 4.6E-27 1.6E-31 176.5 2.5 111 98-208 2-113 (120)
2 3ohu_A Transcription regulator 99.9 2.3E-26 7.7E-31 174.0 5.3 113 96-209 7-120 (125)
3 3ga1_A Nucleus accumbens-assoc 99.9 1.8E-26 6.1E-31 175.7 4.3 112 95-209 7-119 (129)
4 2ihc_A Transcription regulator 99.9 1.9E-26 6.4E-31 174.6 4.4 114 95-209 3-117 (124)
5 3b84_A Zinc finger and BTB dom 99.9 6.2E-27 2.1E-31 176.1 1.6 107 99-208 2-108 (119)
6 1r29_A B-cell lymphoma 6 prote 99.9 1.2E-26 4.1E-31 176.0 1.9 112 96-208 4-117 (127)
7 1buo_A POZ domain, protein (pr 99.9 2E-26 7E-31 173.6 2.2 109 96-208 3-111 (121)
8 2z8h_A Transcription regulator 99.9 2.6E-26 9E-31 176.9 2.7 114 94-208 9-123 (138)
9 3fkc_A Transcriptional regulat 99.9 3E-26 1E-30 171.9 2.4 110 95-208 5-115 (116)
10 2ppi_A Gigaxonin; BTB domain, 99.9 2.3E-26 8E-31 178.8 1.6 114 95-208 21-137 (144)
11 2vpk_A Myoneurin; transcriptio 99.9 5.1E-26 1.8E-30 169.9 1.0 104 102-208 3-108 (116)
12 2yy9_A Zinc finger and BTB dom 99.9 5.5E-26 1.9E-30 174.7 1.1 105 101-208 5-109 (135)
13 2q81_A MIZ-1 protein; BTB/POZ 99.9 2.8E-26 9.5E-31 172.5 -1.8 107 98-208 4-110 (119)
14 3m5b_A Zinc finger and BTB dom 99.9 1.3E-24 4.3E-29 164.1 1.9 97 102-208 13-109 (119)
15 3hve_A Gigaxonin; ubiquitin, c 99.9 4.9E-24 1.7E-28 179.3 0.6 112 97-208 7-121 (256)
16 4eoz_A Speckle-type POZ protei 99.9 4.8E-24 1.6E-28 164.1 0.4 106 103-208 7-113 (145)
17 2vkp_A BTB/POZ domain-containi 99.9 3E-24 1E-28 158.2 -0.8 93 115-208 2-99 (109)
18 3htm_A Speckle-type POZ protei 99.9 9E-24 3.1E-28 166.9 1.9 108 101-208 14-122 (172)
19 3i3n_A Kelch-like protein 11; 99.9 1.4E-23 4.6E-28 178.8 2.9 113 96-208 7-129 (279)
20 3hqi_A Speckle-type POZ protei 99.8 1.7E-21 5.9E-26 167.9 1.1 105 104-208 157-262 (312)
21 4ajy_C Transcription elongatio 99.3 1.3E-12 4.5E-17 94.7 2.4 79 124-203 4-97 (97)
22 2ast_A S-phase kinase-associat 99.2 9.2E-13 3.1E-17 103.7 -0.3 84 124-208 3-116 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 98.9 2E-10 7E-15 88.6 -0.0 81 124-208 4-111 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 3.1E-10 1.1E-14 89.3 -2.5 82 124-208 6-115 (160)
25 2fnj_C Transcription elongatio 98.5 2.6E-08 8.9E-13 71.9 1.9 79 124-203 3-96 (96)
26 1hv2_A Elongin C, ELC1; protei 98.5 2.9E-08 9.9E-13 72.0 1.7 79 124-203 6-99 (99)
27 3v7d_A Suppressor of kinetocho 98.0 7.8E-07 2.7E-11 70.4 0.7 85 123-208 8-123 (169)
28 1vcb_B Protein (elongin C); tu 98.0 1.2E-06 4.1E-11 64.9 1.1 80 123-203 18-112 (112)
29 3drz_A BTB/POZ domain-containi 97.8 4.8E-06 1.6E-10 60.9 1.4 85 123-208 7-98 (107)
30 3drx_A BTB/POZ domain-containi 96.7 0.00056 1.9E-08 55.4 1.8 85 123-208 13-104 (202)
31 3kvt_A Potassium channel prote 96.2 0.0016 5.4E-08 48.1 1.4 83 123-206 6-92 (115)
32 1t1d_A Protein (potassium chan 95.8 0.0032 1.1E-07 45.3 1.8 83 124-207 3-90 (100)
33 1nn7_A Potassium channel KV4.2 95.4 0.004 1.4E-07 45.1 1.1 80 124-207 2-87 (105)
34 1s1g_A Potassium voltage-gated 95.3 0.0052 1.8E-07 45.9 1.2 81 123-207 14-100 (124)
35 2nz0_B Potassium voltage-gated 94.9 0.0074 2.5E-07 46.0 1.1 81 123-207 36-122 (140)
36 2r9r_B Paddle chimera voltage 83.1 0.37 1.2E-05 43.9 1.3 83 123-206 53-140 (514)
No 1
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.93 E-value=4.6e-27 Score=176.48 Aligned_cols=111 Identities=24% Similarity=0.388 Sum_probs=101.2
Q ss_pred eeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEeecCCcchHHHHH
Q psy6031 98 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAIL 176 (209)
Q Consensus 98 ~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~~v~~~~f~~lL 176 (209)
.++|+.|...+++.++++++++.+|||+|.++|+.|+|||.||+++|+||++|| +++.+.....|.++++++++|+.+|
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll 81 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999 4556677889999999999999999
Q ss_pred hhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 177 EFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 177 ~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 82 ~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~ 113 (120)
T 2if5_A 82 DFAYTATLTVSTANVGDILSAARLLEIPAVSH 113 (120)
T ss_dssp HHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999875
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.92 E-value=2.3e-26 Score=174.01 Aligned_cols=113 Identities=26% Similarity=0.386 Sum_probs=103.7
Q ss_pred ceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeec-CCcchHHH
Q psy6031 96 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILAD-VPANDVKA 174 (209)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~-v~~~~f~~ 174 (209)
...+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.. .....|.+++ +++++|+.
T Consensus 7 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-~e~~~i~l~~~~~~~~f~~ 85 (125)
T 3ohu_A 7 MYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQT-KNDLVVSLPEEVTARGFGP 85 (125)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCC-CSSCEEECCTTCCHHHHHH
T ss_pred ceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCC-CCCcEEEeCCCCCHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999995442 2367899998 99999999
Q ss_pred HHhhhhcceeeeecccchhhhhhcccccccccccC
Q psy6031 175 ILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 175 lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
+|+|+|||++.++.+++.+|+.+|++|+++.|+++
T Consensus 86 ~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~ 120 (125)
T 3ohu_A 86 LLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120 (125)
T ss_dssp HHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTS
T ss_pred HHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999864
No 3
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.8e-26 Score=175.73 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=105.2
Q ss_pred cceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEee-cCCcchHH
Q psy6031 95 TNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILA-DVPANDVK 173 (209)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~-~v~~~~f~ 173 (209)
..+.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+. ...+|.|+ ++++++|+
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~~~~f~ 83 (129)
T 3ga1_A 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQPQSFQ 83 (129)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCCHHHHH
T ss_pred ceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCCHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999554 56789997 89999999
Q ss_pred HHHhhhhcceeeeecccchhhhhhcccccccccccC
Q psy6031 174 AILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 174 ~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
.+|+|+|||++.++.+++.+|+.+|++|+++.|+++
T Consensus 84 ~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~ 119 (129)
T 3ga1_A 84 QILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119 (129)
T ss_dssp HHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC
T ss_pred HHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999864
No 4
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.92 E-value=1.9e-26 Score=174.65 Aligned_cols=114 Identities=23% Similarity=0.381 Sum_probs=103.3
Q ss_pred cceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEee-cCCcchHH
Q psy6031 95 TNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILA-DVPANDVK 173 (209)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~-~v~~~~f~ 173 (209)
+.+.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.|||++|+||++||.+. ......|.++ ++++++|+
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~-~~e~~~i~l~~~v~~~~f~ 81 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQ-ADGELNITLPEEVTVKGFE 81 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----CEEEECCTTSCHHHHH
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCC-CCCCceEeecCCcCHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999543 2234678895 89999999
Q ss_pred HHHhhhhcceeeeecccchhhhhhcccccccccccC
Q psy6031 174 AILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209 (209)
Q Consensus 174 ~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~a 209 (209)
.+|+|+|||++.++.+++.+|+.+|++|+++.|+++
T Consensus 82 ~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~ 117 (124)
T 2ihc_A 82 PLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117 (124)
T ss_dssp HHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGG
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999999999863
No 5
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.92 E-value=6.2e-27 Score=176.08 Aligned_cols=107 Identities=27% Similarity=0.373 Sum_probs=100.5
Q ss_pred eeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhh
Q psy6031 99 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEF 178 (209)
Q Consensus 99 ~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~f 178 (209)
++|+.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.. ..+|.|+++++++|+.+|+|
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCCHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999996542 57899999999999999999
Q ss_pred hhcceeeeecccchhhhhhccccccccccc
Q psy6031 179 IYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 179 iYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+|||++.++.+++.+++.+|++|+++.|++
T Consensus 79 iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~ 108 (119)
T 3b84_A 79 FYTGHLALTSGNRDQVLLAARELRVPEAVE 108 (119)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999875
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.92 E-value=1.2e-26 Score=176.01 Aligned_cols=112 Identities=21% Similarity=0.444 Sum_probs=103.8
Q ss_pred ceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhc-cccCCCcceEEe-ecCCcchHH
Q psy6031 96 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVIL-ADVPANDVK 173 (209)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~-~~~e~~~~~I~l-~~v~~~~f~ 173 (209)
...+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+ ....|.| +++++++|+
T Consensus 4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~ 82 (127)
T 1r29_A 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFN 82 (127)
T ss_dssp -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHH
T ss_pred CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHH
Confidence 456778899999999999999999999999999999999999999999999999995 4444 6789999 899999999
Q ss_pred HHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 174 AILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 174 ~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
.+|+|+|||++.++.+++.+|+.+|++|+++.|++
T Consensus 83 ~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~ 117 (127)
T 1r29_A 83 ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117 (127)
T ss_dssp HHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999875
No 7
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.92 E-value=2e-26 Score=173.59 Aligned_cols=109 Identities=20% Similarity=0.318 Sum_probs=102.2
Q ss_pred ceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHH
Q psy6031 96 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAI 175 (209)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~l 175 (209)
.+.+.++.|+..+.+.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+ ...+|.++++++++|+.+
T Consensus 3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~~~~f~~l 78 (121)
T 1buo_A 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPKTFQQI 78 (121)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS----CCSEEEECSSCHHHHHHH
T ss_pred ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC----CCcEEEeCCCCHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999954 356899999999999999
Q ss_pred Hhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 176 LEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 176 L~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|+|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 79 l~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~ 111 (121)
T 1buo_A 79 LEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111 (121)
T ss_dssp HHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHH
T ss_pred HHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHH
Confidence 999999999999999999999999999999875
No 8
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.92 E-value=2.6e-26 Score=176.86 Aligned_cols=114 Identities=23% Similarity=0.392 Sum_probs=104.4
Q ss_pred ccceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEee-cCCcchH
Q psy6031 94 GTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILA-DVPANDV 172 (209)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~-~v~~~~f 172 (209)
...+.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.|||++|+||++||.+. ......|.++ ++++++|
T Consensus 9 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-~~e~~~i~l~~~v~~~~~ 87 (138)
T 2z8h_A 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQ-TDAELTVTLPEEVTVKGF 87 (138)
T ss_dssp TCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC-CCTTEEEECCTTSCHHHH
T ss_pred CCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcC-CCCCceEEeCCCCCHHHH
Confidence 3567788899999999999999999999999999999999999999999999999999543 2234688995 8999999
Q ss_pred HHHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 173 KAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 173 ~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+.+|+|+|||++.++.+++.+|+.+|++|+++.|++
T Consensus 88 ~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~ 123 (138)
T 2z8h_A 88 EPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEE 123 (138)
T ss_dssp HHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999975
No 9
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.92 E-value=3e-26 Score=171.90 Aligned_cols=110 Identities=26% Similarity=0.328 Sum_probs=103.0
Q ss_pred cceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHH
Q psy6031 95 TNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKA 174 (209)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~ 174 (209)
+.+.+.++.|...+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||.+. ..+|.++++++++|+.
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~~~~f~~ 80 (116)
T 3fkc_A 5 KLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAEIFAE 80 (116)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHHHHHH
T ss_pred ceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999999543 5689999999999999
Q ss_pred HHhhhhccee-eeecccchhhhhhccccccccccc
Q psy6031 175 ILEFIYYGEI-KVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 175 lL~fiYtg~i-~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+|+|+|||++ .++.+++.+++.+|++|+++.|++
T Consensus 81 ~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 81 ILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 9999999999 799999999999999999999986
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.92 E-value=2.3e-26 Score=178.79 Aligned_cols=114 Identities=20% Similarity=0.329 Sum_probs=102.3
Q ss_pred cceeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhc-cccC--CCcceEEeecCCcch
Q psy6031 95 TNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIEN--DCHPIVILADVPAND 171 (209)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~-~~~e--~~~~~I~l~~v~~~~ 171 (209)
+.+.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.|||++|+||++||. ++.+ ....+|.|+++++++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~ 100 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMV 100 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHH
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHH
Confidence 4567888999999999999999999999999999999999999999999999999994 3333 567789999999999
Q ss_pred HHHHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 172 VKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 172 f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++
T Consensus 101 f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~ 137 (144)
T 2ppi_A 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 137 (144)
T ss_dssp HHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999875
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.1e-26 Score=169.93 Aligned_cols=104 Identities=26% Similarity=0.392 Sum_probs=97.5
Q ss_pred ccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEee--cCCcchHHHHHhhh
Q psy6031 102 QNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILA--DVPANDVKAILEFI 179 (209)
Q Consensus 102 ~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~--~v~~~~f~~lL~fi 179 (209)
+.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+. ....|.|+ ++++++|+.+|+|+
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999654 35678888 99999999999999
Q ss_pred hcceeeeecccchhhhhhccccccccccc
Q psy6031 180 YYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 180 Ytg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|||++.++.+++.+++.+|++|+++.|++
T Consensus 80 Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~ 108 (116)
T 2vpk_A 80 YTGTLNLDSWNVKEIHQAADYLKVEEVVT 108 (116)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999875
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.91 E-value=5.5e-26 Score=174.69 Aligned_cols=105 Identities=28% Similarity=0.352 Sum_probs=95.8
Q ss_pred eccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhh
Q psy6031 101 WQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIY 180 (209)
Q Consensus 101 ~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiY 180 (209)
++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.. ..+|.|+++++++|+.+|+|||
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~~~~f~~lL~fiY 81 (135)
T 2yy9_A 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFGLLLDFFY 81 (135)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGGHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999995532 5689999999999999999999
Q ss_pred cceeeeecccchhhhhhccccccccccc
Q psy6031 181 YGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 181 tg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
||++.++.+++.+|+.+|++|+|+.|++
T Consensus 82 tg~~~i~~~~v~~ll~~A~~l~i~~L~~ 109 (135)
T 2yy9_A 82 TGHLALTSGNRDQVLLAAKELRVPEAVE 109 (135)
T ss_dssp HSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999875
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.91 E-value=2.8e-26 Score=172.52 Aligned_cols=107 Identities=23% Similarity=0.394 Sum_probs=98.6
Q ss_pred eeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHh
Q psy6031 98 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILE 177 (209)
Q Consensus 98 ~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~ 177 (209)
.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+ ...+|.++++++++|+.+|+
T Consensus 4 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----~~~~i~l~~~~~~~f~~ll~ 79 (119)
T 2q81_A 4 GSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISNAAGLGQVLE 79 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH----CCSGGGGGGCCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC----CCCEEEeCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999954 24467888999999999999
Q ss_pred hhhcceeeeecccchhhhhhccccccccccc
Q psy6031 178 FIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 178 fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 80 ~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~ 110 (119)
T 2q81_A 80 FMYTAKLSLSPENVDDVLAVATFLQMQDIIT 110 (119)
T ss_dssp HHHHSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999875
No 14
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.89 E-value=1.3e-24 Score=164.09 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=88.9
Q ss_pred ccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhc
Q psy6031 102 QNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYY 181 (209)
Q Consensus 102 ~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYt 181 (209)
+.+...+++.|+ +.++.+|||+|.++|+.|+|||.|||++|+||++ ....|.++++++++|+.+|+|+||
T Consensus 13 ~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~~~~f~~ll~fiYt 82 (119)
T 3m5b_A 13 PYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGISPSTFAQLLNFVYG 82 (119)
T ss_dssp TTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence 346778888886 6789999999999999999999999999999985 356789999999999999999999
Q ss_pred ceeeeecccchhhhhhccccccccccc
Q psy6031 182 GEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 182 g~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|++.++.+++.+++.+|++|+++.|++
T Consensus 83 g~~~i~~~~v~~ll~aA~~l~i~~l~~ 109 (119)
T 3m5b_A 83 ESVELQPGELRPLQEAARALGVQSLEE 109 (119)
T ss_dssp CCEEECGGGHHHHHHHHHHTTCHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999875
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.87 E-value=4.9e-24 Score=179.26 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=95.1
Q ss_pred eeeeeccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhcc-cc--CCCcceEEeecCCcchHH
Q psy6031 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSP-IE--NDCHPIVILADVPANDVK 173 (209)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~-~~--e~~~~~I~l~~v~~~~f~ 173 (209)
..+..+.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+ +. +....+|.++++++++|+
T Consensus 7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~ 86 (256)
T 3hve_A 7 SAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 86 (256)
T ss_dssp ---CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHH
T ss_pred CccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHH
Confidence 456678899999999999999999999999999999999999999999999999943 33 466779999999999999
Q ss_pred HHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 174 AILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 174 ~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
.+|+|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 87 ~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~ 121 (256)
T 3hve_A 87 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121 (256)
T ss_dssp HHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHH
Confidence 99999999999999999999999999999999875
No 16
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.87 E-value=4.8e-24 Score=164.11 Aligned_cols=106 Identities=28% Similarity=0.350 Sum_probs=98.1
Q ss_pred cchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhhc-cccCCCcceEEeecCCcchHHHHHhhhhc
Q psy6031 103 NFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS-PIENDCHPIVILADVPANDVKAILEFIYY 181 (209)
Q Consensus 103 ~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~-~~~e~~~~~I~l~~v~~~~f~~lL~fiYt 181 (209)
.+.+.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||. ++.+....+|.++++++++|+.+|+|+|+
T Consensus 7 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhcc
Confidence 35678899999999999999999999999999999999999999999994 45566678999999999999999999999
Q ss_pred ceeeeecccchhhhhhccccccccccc
Q psy6031 182 GEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 182 g~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|.+.++.+++.+++.+|++|+++.|++
T Consensus 87 ~~~~~~~~~~~~ll~~A~~~~~~~l~~ 113 (145)
T 4eoz_A 87 GKAPNLDKMADDLLAAADKYALERLKV 113 (145)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCHHHHH
T ss_pred CccCCcHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999999999999999874
No 17
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=3e-24 Score=158.19 Aligned_cols=93 Identities=22% Similarity=0.382 Sum_probs=83.7
Q ss_pred Hhhhcceeeeeeeccc----ccceeeeeeeecCChhhHhhhc-cccCCCcceEEeecCCcchHHHHHhhhhcceeeeecc
Q psy6031 115 LLKMESMVDVTLKAEG----EAFQAHRIILSASSPFFQEILS-PIENDCHPIVILADVPANDVKAILEFIYYGEIKVEGA 189 (209)
Q Consensus 115 l~~~~~~~DV~l~v~~----~~f~aHr~VLaa~S~yFr~~f~-~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~ 189 (209)
+++++.+|||+|.+++ +.|+|||.||+++|+||++||. ++.+.. .+|.++++++++|+.+|+|+|||++.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5788999999999988 8999999999999999999994 455555 899999999999999999999999999999
Q ss_pred cchhhhhhccccccccccc
Q psy6031 190 NIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 190 ~v~~Ll~~A~~l~i~~L~~ 208 (209)
++.+++.+|++|+++.|++
T Consensus 81 ~~~~ll~~A~~~~~~~L~~ 99 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAK 99 (109)
T ss_dssp THHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999875
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.87 E-value=9e-24 Score=166.94 Aligned_cols=108 Identities=28% Similarity=0.339 Sum_probs=100.2
Q ss_pred eccchhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEeecCCcchHHHHHhhh
Q psy6031 101 WQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFI 179 (209)
Q Consensus 101 ~~~~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~~v~~~~f~~lL~fi 179 (209)
+..+.+.+...++++++++.+|||+|.++|+.|+|||.||+++|+||++|| .++.+....+|.++++++++|+.+|+|+
T Consensus 14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHH
Confidence 344677899999999999999999999999999999999999999999999 4556777789999999999999999999
Q ss_pred hcceeeeecccchhhhhhccccccccccc
Q psy6031 180 YYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 180 Ytg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
|+|.+.++.+++.+|+.+|++|+++.|++
T Consensus 94 Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~ 122 (172)
T 3htm_A 94 YTGKAPNLDKMADDLLAAADKYALERLKV 122 (172)
T ss_dssp HHSCCTTGGGTHHHHHHHHHHTTCHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999874
No 19
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.87 E-value=1.4e-23 Score=178.78 Aligned_cols=113 Identities=23% Similarity=0.385 Sum_probs=98.8
Q ss_pred ceeeeeccchhhhHHHHHHHhhhcceeeeeeecc---cccceeeeeeeecCChhhHhhh-ccccCCCcceEEee------
Q psy6031 96 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAE---GEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILA------ 165 (209)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~l~~~~~~~DV~l~v~---~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~------ 165 (209)
...+.++.|+..+++.|+++++++.+|||+|.|+ |+.|+|||.||+++|+||++|| +++.++...+|.++
T Consensus 7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~ 86 (279)
T 3i3n_A 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEP 86 (279)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTT
T ss_pred ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccC
Confidence 4567778999999999999999999999999998 8999999999999999999999 45667788899998
Q ss_pred cCCcchHHHHHhhhhcceeeeecccchhhhhhccccccccccc
Q psy6031 166 DVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 166 ~v~~~~f~~lL~fiYtg~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 87 ~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~ 129 (279)
T 3i3n_A 87 GPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKE 129 (279)
T ss_dssp CSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHH
Confidence 8999999999999999999999999999999999999999875
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.81 E-value=1.7e-21 Score=167.94 Aligned_cols=105 Identities=29% Similarity=0.359 Sum_probs=94.8
Q ss_pred chhhhHHHHHHHhhhcceeeeeeecccccceeeeeeeecCChhhHhhh-ccccCCCcceEEeecCCcchHHHHHhhhhcc
Q psy6031 104 FQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEFIYYG 182 (209)
Q Consensus 104 ~~~~l~~~l~~l~~~~~~~DV~l~v~~~~f~aHr~VLaa~S~yFr~~f-~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg 182 (209)
+.+.+.+.+.++++++.+|||+|.++|+.|+|||.|||++|+||++|| +.+.+....+|.|+++++++|+.+|+|+|+|
T Consensus 157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG 236 (312)
T ss_dssp CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence 456789999999999999999999999999999999999999999999 4566778889999999999999999999999
Q ss_pred eeeeecccchhhhhhccccccccccc
Q psy6031 183 EIKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 183 ~i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
.+.+..+++.+|+.+|++|+++.|++
T Consensus 237 ~~~~~~~~~~~ll~~A~~~~~~~l~~ 262 (312)
T 3hqi_A 237 KAPNLDKMADDLLAAADKYALERLKV 262 (312)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhCHHHHHH
Confidence 99988899999999999999999874
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.26 E-value=1.3e-12 Score=94.73 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=64.7
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhcc---ccCCCcceEEeecCCcchHHHHHhhhh-----c---ceee---eec
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSP---IENDCHPIVILADVPANDVKAILEFIY-----Y---GEIK---VEG 188 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~---~~e~~~~~I~l~~v~~~~f~~lL~fiY-----t---g~i~---~~~ 188 (209)
|+++. +|+.|.+||.| |++|+||++||.+ ..+.....|.|++|++.+++.+++|+| + +.+. ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 45554 78999999999 9999999999953 345567899999999999999999999 4 6676 889
Q ss_pred ccchhhhhhcccccc
Q psy6031 189 ANIFSVLKTAQNLKI 203 (209)
Q Consensus 189 ~~v~~Ll~~A~~l~i 203 (209)
+++.+|+.||++|+.
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999873
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.22 E-value=9.2e-13 Score=103.72 Aligned_cols=84 Identities=24% Similarity=0.411 Sum_probs=70.4
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhcc--cc-CCCcceEEeecCCcchHHHHHhhhhcce----------------
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSP--IE-NDCHPIVILADVPANDVKAILEFIYYGE---------------- 183 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~--~~-e~~~~~I~l~~v~~~~f~~lL~fiYtg~---------------- 183 (209)
|+|.. +|+.|.+||.| |++|+||++||.+ .. +.....|.|++|+..+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 67764 89999999999 9999999999954 33 4555789999999999999999999987
Q ss_pred ----------eeeecccchhhhhhccccccccccc
Q psy6031 184 ----------IKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 184 ----------i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+.++.+++.+|+.+|++|+|..|.+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld 116 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLD 116 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHH
Confidence 6677888999999999999999865
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.88 E-value=2e-10 Score=88.59 Aligned_cols=81 Identities=25% Similarity=0.415 Sum_probs=69.5
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcce-------------------
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGE------------------- 183 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~------------------- 183 (209)
|++.. +|+.|.+|+.+ |..|.+|+.||.... ...|.|++|+..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHHHHTTCC----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence 66666 88999999998 899999999995431 4579999999999999999999865
Q ss_pred -------eeeecccchhhhhhccccccccccc
Q psy6031 184 -------IKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 184 -------i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+.++.+++.+|+.||++|++..|.+
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lld 111 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIKGLLD 111 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 4566778999999999999998864
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.76 E-value=3.1e-10 Score=89.31 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=42.1
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcce-------------------
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGE------------------- 183 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~------------------- 183 (209)
|+|.. +|+.|.+|+.+ |..|.+|+.||... .....|.|++|+..+++.+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~--~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD--CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSCHHHHHHHHHC------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc--CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 66765 78999999998 89999999999543 234579999999999999999999875
Q ss_pred --------eeeecccchhhhhhccccccccccc
Q psy6031 184 --------IKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 184 --------i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+.++.+++.+|+.||++|+|..|.+
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lld 115 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIKNLLD 115 (160)
T ss_dssp ------------------CHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHH
Confidence 3567778999999999999998864
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.52 E-value=2.6e-08 Score=71.86 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhcc--c-cCCCcceEEeecCCcchHHHHHhhhhcce-----------eeeec
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSP--I-ENDCHPIVILADVPANDVKAILEFIYYGE-----------IKVEG 188 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~--~-~e~~~~~I~l~~v~~~~f~~lL~fiYtg~-----------i~~~~ 188 (209)
|++.. +|..|.+++.+ |..|.+++.|+.. . .+.....|.|++|+..+++.+++|+|... ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 55655 88999999997 8999999999943 2 34445689999999999999999998643 34677
Q ss_pred ccchhhhhhcccccc
Q psy6031 189 ANIFSVLKTAQNLKI 203 (209)
Q Consensus 189 ~~v~~Ll~~A~~l~i 203 (209)
+.+.+|+.||++|++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 789999999999875
No 26
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.50 E-value=2.9e-08 Score=72.04 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=64.8
Q ss_pred eeeec-ccccceeeeeeeecCChhhHhhhccccCCCcceEEeecCCcchHHHHHhhhhcce--------------eeeec
Q psy6031 124 VTLKA-EGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIYYGE--------------IKVEG 188 (209)
Q Consensus 124 V~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e~~~~~I~l~~v~~~~f~~lL~fiYtg~--------------i~~~~ 188 (209)
|++.. +|..|.+++.+ |..|.+++.|+....+.....|.|++|+..+++.+++|+|... ..++.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~ 84 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPT 84 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCH
Confidence 56665 88999999997 8999999999954324455689999999999999999998643 23566
Q ss_pred ccchhhhhhcccccc
Q psy6031 189 ANIFSVLKTAQNLKI 203 (209)
Q Consensus 189 ~~v~~Ll~~A~~l~i 203 (209)
+.+.+|+.||++|++
T Consensus 85 ~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 85 EMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 678999999999875
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.04 E-value=7.8e-07 Score=70.44 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=65.2
Q ss_pred eeeeec-ccccceeeeeeeecCChhhHhhhccccC-----CCcceEEeecCCcchHHHHHhhhhcce-------------
Q psy6031 123 DVTLKA-EGEAFQAHRIILSASSPFFQEILSPIEN-----DCHPIVILADVPANDVKAILEFIYYGE------------- 183 (209)
Q Consensus 123 DV~l~v-~~~~f~aHr~VLaa~S~yFr~~f~~~~e-----~~~~~I~l~~v~~~~f~~lL~fiYtg~------------- 183 (209)
-|+|+. +|..|.+++.+ |..|.+++.|+..... .....|.|++|+..+++.+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466665 78999999998 8889999999943211 223689999999999999999997532
Q ss_pred ------------eeeecccchhhhhhccccccccccc
Q psy6031 184 ------------IKVEGANIFSVLKTAQNLKISALLE 208 (209)
Q Consensus 184 ------------i~~~~~~v~~Ll~~A~~l~i~~L~~ 208 (209)
+.++.+.+.+|+.||++|+|..|.+
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lld 123 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLD 123 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHH
Confidence 1234456789999999999998864
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.00 E-value=1.2e-06 Score=64.87 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=62.2
Q ss_pred eeeee-cccccceeeeeeeecCChhhHhhhccc---cCCCcceEEeecCCcchHHHHHhhhhcce-----------eeee
Q psy6031 123 DVTLK-AEGEAFQAHRIILSASSPFFQEILSPI---ENDCHPIVILADVPANDVKAILEFIYYGE-----------IKVE 187 (209)
Q Consensus 123 DV~l~-v~~~~f~aHr~VLaa~S~yFr~~f~~~---~e~~~~~I~l~~v~~~~f~~lL~fiYtg~-----------i~~~ 187 (209)
-|+|+ .+|..|.+++.+ |..|..++.|+... .+.....|.|++|+..+++.+++|+|... ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 36666 488999999994 78999999999432 23344689999999999999999997632 3466
Q ss_pred cccchhhhhhcccccc
Q psy6031 188 GANIFSVLKTAQNLKI 203 (209)
Q Consensus 188 ~~~v~~Ll~~A~~l~i 203 (209)
.+.+.+|+.||++|++
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6779999999999875
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.82 E-value=4.8e-06 Score=60.93 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=66.8
Q ss_pred eeeeecccccceeeeeeeecCC-hhhHhhhcccc-----CCCcceEEeecCCcchHHHHHhhhhcceeeeeccc-chhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASS-PFFQEILSPIE-----NDCHPIVILADVPANDVKAILEFIYYGEIKVEGAN-IFSVL 195 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S-~yFr~~f~~~~-----e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~-v~~Ll 195 (209)
-|+|.|||+.|...+..|+... .+|..||.+.. .....++-+ |-+|..|+.||+|+.+|.+.++.+- ...++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 3788899999999999998875 47888884321 112345555 7899999999999999998876543 47799
Q ss_pred hhccccccccccc
Q psy6031 196 KTAQNLKISALLE 208 (209)
Q Consensus 196 ~~A~~l~i~~L~~ 208 (209)
+-|++|+++.|.+
T Consensus 86 ~Ea~fy~l~~L~~ 98 (107)
T 3drz_A 86 EEAEFYNITSLIK 98 (107)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHCCCHHHHH
Confidence 9999999999875
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.67 E-value=0.00056 Score=55.41 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=65.5
Q ss_pred eeeeecccccceeeeeeeecCC-hhhHhhhcccc-----CCCcceEEeecCCcchHHHHHhhhhcceeeeeccc-chhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASS-PFFQEILSPIE-----NDCHPIVILADVPANDVKAILEFIYYGEIKVEGAN-IFSVL 195 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S-~yFr~~f~~~~-----e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~~-v~~Ll 195 (209)
=|+|.|||+.|...+..|.... .+|..||.+.. .....++-+ |-+|..|+.||+|+-+|.+.++.+- ...++
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~ 91 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 91 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHH
Confidence 3778899999999999998764 47788884321 112334544 6799999999999999998876543 46799
Q ss_pred hhccccccccccc
Q psy6031 196 KTAQNLKISALLE 208 (209)
Q Consensus 196 ~~A~~l~i~~L~~ 208 (209)
.-|++|+|+.|.+
T Consensus 92 eEA~FygL~~Lv~ 104 (202)
T 3drx_A 92 EEAEFYNITSLIK 104 (202)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHCCcHHHHH
Confidence 9999999999864
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.15 E-value=0.0016 Score=48.13 Aligned_cols=83 Identities=7% Similarity=0.036 Sum_probs=62.4
Q ss_pred eeeeecccccceeeeeeeecCC-hhhHhhhccc--cCCCcceEEeecCCcchHHHHHhhhhcceeeeecc-cchhhhhhc
Q psy6031 123 DVTLKAEGEAFQAHRIILSASS-PFFQEILSPI--ENDCHPIVILADVPANDVKAILEFIYYGEIKVEGA-NIFSVLKTA 198 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S-~yFr~~f~~~--~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~-~v~~Ll~~A 198 (209)
-|+|.|||+.|...+..|+... ..|..|+... ......++-+ |-++..|+.||.|+-+|++.++.+ .+..+++-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 3788999999999999997663 3455565321 1123345555 679999999999999999887654 367899999
Q ss_pred cccccccc
Q psy6031 199 QNLKISAL 206 (209)
Q Consensus 199 ~~l~i~~L 206 (209)
++|+|+..
T Consensus 85 ~fy~i~~~ 92 (115)
T 3kvt_A 85 EFWGLDSN 92 (115)
T ss_dssp HHHTCCGG
T ss_pred HHhCCChH
Confidence 99999875
No 32
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.83 E-value=0.0032 Score=45.32 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=59.3
Q ss_pred eeeecccccceeeeeeeecCC-hhhHhhhcc--ccCCCcceEEeecCCcchHHHHHhhhhc-ceeeeecc-cchhhhhhc
Q psy6031 124 VTLKAEGEAFQAHRIILSASS-PFFQEILSP--IENDCHPIVILADVPANDVKAILEFIYY-GEIKVEGA-NIFSVLKTA 198 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S-~yFr~~f~~--~~e~~~~~I~l~~v~~~~f~~lL~fiYt-g~i~~~~~-~v~~Ll~~A 198 (209)
|+|.|||+.|...+..|+..- ..+..|+.. .......++-+ |-++..|+.||.|+-+ |++.++.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678899999999998886542 233344421 11123345555 6799999999999998 89876544 367799999
Q ss_pred ccccccccc
Q psy6031 199 QNLKISALL 207 (209)
Q Consensus 199 ~~l~i~~L~ 207 (209)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998753
No 33
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.42 E-value=0.004 Score=45.09 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=57.6
Q ss_pred eeeecccccceeeeeeeecCChhhHhhhccc-----cCCCcceEEeecCCcchHHHHHhhhhcceeeeecc-cchhhhhh
Q psy6031 124 VTLKAEGEAFQAHRIILSASSPFFQEILSPI-----ENDCHPIVILADVPANDVKAILEFIYYGEIKVEGA-NIFSVLKT 197 (209)
Q Consensus 124 V~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~-----~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~-~v~~Ll~~ 197 (209)
|+|.|||+.|...+..|+.... .+|+.. ......++-+ |-++..|+.||.|+-+|.+.++.+ .+..+++-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6788999999888888865432 223111 0112334544 569999999999999999886654 36789999
Q ss_pred cccccccccc
Q psy6031 198 AQNLKISALL 207 (209)
Q Consensus 198 A~~l~i~~L~ 207 (209)
|++|+++.+.
T Consensus 78 a~fy~i~~l~ 87 (105)
T 1nn7_A 78 LAFFGLIPEI 87 (105)
T ss_dssp HHHHTCCSCC
T ss_pred HHHcCCCHHH
Confidence 9999998863
No 34
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.27 E-value=0.0052 Score=45.93 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=58.8
Q ss_pred eeeeecccccceeeeeeeecCChhhHhhhccc-----cCCCcceEEeecCCcchHHHHHhhhhcceeeeecc-cchhhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPI-----ENDCHPIVILADVPANDVKAILEFIYYGEIKVEGA-NIFSVLK 196 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~-----~e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~-~v~~Ll~ 196 (209)
-|+|.|||+.|..-+..|..... .+|+.. ......++-+ |-++..|+.||.|+-+|.+.++.+ .+..+++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 47888999999988888865432 233111 0122345544 569999999999999999887654 3688999
Q ss_pred hcccccccccc
Q psy6031 197 TAQNLKISALL 207 (209)
Q Consensus 197 ~A~~l~i~~L~ 207 (209)
-|++|+|+.+.
T Consensus 90 Ea~fy~i~~l~ 100 (124)
T 1s1g_A 90 ELAFYGILPEI 100 (124)
T ss_dssp HHHHTTCCGGG
T ss_pred HHHHcCCChHH
Confidence 99999998873
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.86 E-value=0.0074 Score=46.04 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=59.2
Q ss_pred eeeeecccccceeeeeeeecCChhhHhhhccc-c----CCCcceEEeecCCcchHHHHHhhhhcceeeeecc-cchhhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFFQEILSPI-E----NDCHPIVILADVPANDVKAILEFIYYGEIKVEGA-NIFSVLK 196 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yFr~~f~~~-~----e~~~~~I~l~~v~~~~f~~lL~fiYtg~i~~~~~-~v~~Ll~ 196 (209)
-|+|.|||+.|...+..|..... .+|... + .....++-+ |-++..|+.||+|+-+|.+.++.+ .+..+++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 48888999999998888865432 233211 0 122345555 569999999999999999887654 3788999
Q ss_pred hcccccccccc
Q psy6031 197 TAQNLKISALL 207 (209)
Q Consensus 197 ~A~~l~i~~L~ 207 (209)
-|++|+|+.+.
T Consensus 112 Ea~fy~i~~l~ 122 (140)
T 2nz0_B 112 ELAFYGILPEI 122 (140)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHcCCChHH
Confidence 99999999873
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=83.09 E-value=0.37 Score=43.94 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=57.3
Q ss_pred eeeeecccccceeeeeeeecCChhh-Hhhhcc--ccCCCcceEEeecCCcchHHHHHhhhhc-ceeeeeccc-chhhhhh
Q psy6031 123 DVTLKAEGEAFQAHRIILSASSPFF-QEILSP--IENDCHPIVILADVPANDVKAILEFIYY-GEIKVEGAN-IFSVLKT 197 (209)
Q Consensus 123 DV~l~v~~~~f~aHr~VLaa~S~yF-r~~f~~--~~e~~~~~I~l~~v~~~~f~~lL~fiYt-g~i~~~~~~-v~~Ll~~ 197 (209)
-|++.|||+.|...+..|+..-.-+ -.++.. .-.....++-+ |-++..|+.+|.|+.+ |++..+.+- ...+++-
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 4778899999999888886543221 112211 11123345555 6799999999999999 998866543 4568888
Q ss_pred ccccccccc
Q psy6031 198 AQNLKISAL 206 (209)
Q Consensus 198 A~~l~i~~L 206 (209)
|++|+++++
T Consensus 132 ~~f~~i~~~ 140 (514)
T 2r9r_B 132 IRFYELGEE 140 (514)
T ss_dssp HHHTTCCHH
T ss_pred HHhcCCCHH
Confidence 999998765
Done!