RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6031
(209 letters)
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 83.4 bits (207), Expect = 5e-21
Identities = 27/113 (23%), Positives = 55/113 (48%)
Query: 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIEN 156
+ + ++ L K + + DVTL E + F+AHR +L+A S +F + L
Sbjct: 8 YVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK 67
Query: 157 DCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ + + +V A +L+F Y ++ + NI V++ A+ L++ L ++
Sbjct: 68 NDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 81.9 bits (203), Expect = 2e-20
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 92 TTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL 151
+ M+ NF + L + DV++ +G AF+AHR +L+ASS +F+++
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 152 SPIENDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ + + + A V + IL F Y G + + + ++ TA L+I ++E
Sbjct: 64 N--NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 81.5 bits (202), Expect = 3e-20
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 96 NFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIE 155
+ +++ + L +L + + DV + E F+AH+ +L A S F I +
Sbjct: 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL 63
Query: 156 NDCH-PIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
I + ++ +L+F+Y + + NI +V+ TA L++ +++
Sbjct: 64 KRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 81.1 bits (201), Expect = 3e-20
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 99 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDC 158
M + V + EL + + D TL G F+AH +L+ S FFQ + +
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYG---DGS 58
Query: 159 HPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
V+L A +L+F Y G + + N VL A+ L++ +E
Sbjct: 59 GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 80.7 bits (200), Expect = 5e-20
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 98 CMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIEND 157
+ + + + L + + DV + EG F HR +L+A S +F+++ +
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 158 CH-PIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ + V A + A+++F Y + V AN+ +L A+ L+I A+
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 80.7 bits (200), Expect = 5e-20
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIEN 156
F + ++ L K + + DVT+ EG+ F+AHR +L+A S +F + +
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD 64
Query: 157 DCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
I + +V + +++F Y ++ + N+ V K + L + + E+
Sbjct: 65 GELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 80.8 bits (200), Expect = 6e-20
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
EL + + D TL G F+AH +L+ S FFQ I + V+L A
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYG---DGTGGSVVLPAGFAE 71
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+L+F Y G + + N VL A+ L++ +E
Sbjct: 72 IFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 80.3 bits (199), Expect = 6e-20
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
L + + + D T+ F+AHR +L++ S +F I + + + V A+
Sbjct: 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNV-FLDQSQVKAD 70
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ +LEFIY G + ++ N+ + + A LK+ ++
Sbjct: 71 GFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 80.8 bits (200), Expect = 6e-20
Identities = 23/113 (20%), Positives = 52/113 (46%)
Query: 97 FCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIEN 156
F + ++ L K + + DVT+ EG+ F+AHR +L+A S +F + +
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD 71
Query: 157 DCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ + +V + +++F Y ++ + N+ V + + L + + E+
Sbjct: 72 AELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 79.2 bits (196), Expect = 2e-19
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 99 MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDC 158
+ H+ +L Q ++ + D T +G F+AH+ +L+A S +F+ + ++
Sbjct: 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD-- 62
Query: 159 HPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+V L A + +LEF+Y ++ + N+ VL A L++ ++ A
Sbjct: 63 --VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 76.6 bits (189), Expect = 3e-18
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS---PIENDCHPIVILADV 167
L + D L +GE + IL+A+SP+ + L+ P ++ + L +
Sbjct: 37 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 96
Query: 168 PANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
++ IL++I+ G+I++ I V++ A L ++ L
Sbjct: 97 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 138
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 75.3 bits (186), Expect = 5e-18
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
+ Q+ ++ DV + + + F AHR +L+ +S F+ + L +
Sbjct: 18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH----RNSQHYTLDFLSPK 73
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ ILE+ Y ++ + ++ +L A+ L+I L E
Sbjct: 74 TFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 73.5 bits (181), Expect = 3e-17
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 121 MVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPANDVKAILEFIY 180
+ D + + F AH ++L+ S + + + +L F+Y
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ--------WALGEGISPSTFAQLLNFVY 81
Query: 181 YGEIKVEGANIFSVLKTAQNLKISALLEA 209
++++ + + + A+ L + +L EA
Sbjct: 82 GESVELQPGELRPLQEAARALGVQSLEEA 110
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 73.3 bits (181), Expect = 6e-17
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 107 HLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ-EILSPIENDCHPIVILA 165
LA EL L + D L G+ FQAH+ IL+A SP F +E V +
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN 70
Query: 166 DVPANDVKAILEFIYYGEIKVEGANIFSVLKTA 198
DV K ++ FIY G+ +L A
Sbjct: 71 DVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAA 103
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 75.3 bits (186), Expect = 7e-17
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS--PIENDCH-PIVILADV 167
L + D L +GE + IL+A+SP+ + L+ P ++D + L +
Sbjct: 21 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 80
Query: 168 PANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
++ IL++I+ G+I++ I V++ A L ++ L
Sbjct: 81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 73.1 bits (180), Expect = 1e-16
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 112 LYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQ-EILSPIENDCHPIVILADVPAN 170
L L + D L G+ FQAH+ IL+A SP F +E V + DV
Sbjct: 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 84
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTA 198
K ++ FIY G+ +L A
Sbjct: 85 VFKEMMCFIYTGKAPNLDKMADDLLAAA 112
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 70.8 bits (174), Expect = 3e-16
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 111 ELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
L + DVT+ E F+AH+ ILSASS +F ++ S +V L+ + A
Sbjct: 21 SLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS----VAGQVVELSFIRAE 76
Query: 171 DVKAILEFIYYGEI-KVEGANIFSVLKTAQNLKISALLE 208
IL +IY +I +V + ++K+ Q L + +
Sbjct: 77 IFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 66.8 bits (164), Expect = 6e-15
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 115 LLKMESMVDVTLK----AEGEAFQAHRIILSASSPFFQEILSPIENDCHPIVILADVPAN 170
+ E M DV AH+ +L+ S F + + + + DV
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA 61
Query: 171 DVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+L+++Y EI +E + + L A+ + AL +A
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 66.1 bits (162), Expect = 2e-13
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 111 ELYQLLKMESMVDVTL---KAEGEAFQAHRIILSASSPFFQEILS--PIENDCHPIVI-- 163
+ + D+TL A G F+AHR +L+A++ +F +LS E+ + +
Sbjct: 22 RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRK 81
Query: 164 ---LADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
+ V+A++E++Y G I+V ++ VL+ A + L E
Sbjct: 82 WSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEF 130
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 64.5 bits (157), Expect = 1e-12
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 82 TILSIRMAAITTGTNFCMKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILS 141
+ ++ + +G N + + LA EL L + D L G+ FQAH+ IL+
Sbjct: 135 EVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILA 194
Query: 142 ASSPFFQ-EILSPIENDCHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTA 198
A SP F +E V + DV K ++ FIY G+ +L A
Sbjct: 195 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAA 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-04
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 58/165 (35%)
Query: 48 FFIVGLDG----SHCSVDEFFM--SVDDGGSVPVPQPEEKTILSIR------MAAITTGT 95
FFI G+ + S+ + S+++ VP P LSI + T
Sbjct: 304 FFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNKT 356
Query: 96 NFCMKWQNFQVHLA-------F-------ELYQL-LKMESMVDVTLKAEGEAFQAHRIIL 140
N + QV ++ LY L L + KA Q RI
Sbjct: 357 NSHLP-AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-----AKAPSGLDQ-SRIPF 409
Query: 141 SA------------SSPFFQEILSPIENDCHPIVILADVPANDVK 173
S +SPF +L P + +I D+ N+V
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASD-----LINKDLVKNNVS 449
Score = 26.6 bits (58), Expect = 8.4
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 48/155 (30%)
Query: 1 FDGLEAINEEENPLAPWLTLKPPIEPKDSSKESQLTTTNTSETNDQQFFIVGLDGSHCSV 60
F+ L + + + L + I+ L+ + + ++ F GL+
Sbjct: 170 FEELRDLYQTYHVL-----VGDLIK----FSAETLSELIRTTLDAEKVFTQGLN------ 214
Query: 61 DEFFMS-VDDGGSVPVPQPEEKTILSIRMA--AITTGTNFCMKWQNFQVHLAFELYQLLK 117
+ +++ P P++ +LSI ++ I + QL
Sbjct: 215 ---ILEWLEN----PSNTPDKDYLLSIPISCPLIG-------------------VIQLAH 248
Query: 118 MESMVDVTLKAEGEAFQAHRIILSASSPFFQEILS 152
VT K G R L ++ Q +++
Sbjct: 249 YV----VTAKLLGFTPGELRSYLKGATGHSQGLVT 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 6e-04
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 65/219 (29%)
Query: 1 FDGLEAINEE------ENPLAP---WLTLKPPIEPKDSSKESQLTTTNTSET-NDQQFFI 50
F L + EE E L +L E + S +++ ND Q F
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 51 -------------------------VGLDGSHCSVDEFFMSVDDGGSVPVPQPEEKTILS 85
V +DG + GS KT ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDG---------V----LGS-------GKTWVA 167
Query: 86 I---RMAAITTGTNFCMKWQNF-QVHLAFE-LYQLLKMESMVDVTLKAEGEAFQAHRIIL 140
+ + +F + W N + L L K+ +D + + ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 141 SASSPFFQEIL-SPIENDCHPIVILADVPANDVKAILEF 178
+ + +L S +C +++L +V + KA F
Sbjct: 228 HSIQAELRRLLKSKPYENC--LLVLLNV--QNAKAWNAF 262
Score = 35.6 bits (81), Expect = 0.011
Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 41/186 (22%)
Query: 2 DGLEAINEEENPLAPWLTLKPPIEPKDSSKESQLTTT----NTSETNDQ-QFFIVGLDGS 56
L +E ++ L +L +P P++ + + + + +
Sbjct: 296 MTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW------K 348
Query: 57 HCSVDEFFMSVDDGGSVPVPQPEEK----TILSIRM--AAITTGTNFCMKWQNFQVHLAF 110
H + D+ ++ S+ V +P E LS+ A I T + W +
Sbjct: 349 HVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVM 405
Query: 111 ELYQLLKMESMV----------------DVTLKAEGEAFQAHRIILSASSP---FFQEIL 151
+ L S+V ++ +K E E HR I+ + F + L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKTFDSDDL 464
Query: 152 SPIEND 157
P D
Sbjct: 465 IPPYLD 470
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.60
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 5 EAINEEENPL-------APWLTLKPPIE 25
+A+ + + L AP L +K +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 6.3
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 183 EIK-VEGANIFSVLK-----TAQNLKISALLE 208
+K ++ + LK +A L I A +E
Sbjct: 21 ALKKLQAS-----LKLYADDSAPALAIKATME 47
>1jye_A Lactose operon repressor; gene regulation, protein stability,
protein DNA-binding, transcription; 1.70A {Escherichia
coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A
3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A*
1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A
1lqc_A 1lcc_A* ...
Length = 349
Score = 27.5 bits (62), Expect = 2.8
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 138 IILSASSPFFQEILSPIENDCHP---IVILADVPANDVKAILEFI 179
S + +I++ I + V+++ V + V+A +
Sbjct: 67 ATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAV 111
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 6/27 (22%)
Query: 167 VPAN-----DVKAILEFIYYGEIKVEG 188
VP N DV+A++EFI Y K G
Sbjct: 536 VPFNQGSKQDVEALIEFI-YDTEKNGG 561
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2,
protein structure initiative; 2.30A {Staphylococcus
saprophyticus subsp}
Length = 288
Score = 27.1 bits (61), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 138 IILSASSPFFQEILSPIENDCHP---IVILAD 166
I+ +PFF E+L+ I ++C V +A
Sbjct: 13 FIVPDQNPFFTEVLTEISHECQKHHLHVAVAS 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,066,936
Number of extensions: 171456
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 34
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)