RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6031
         (209 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 78.2 bits (192), Expect = 2e-19
 Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 99  MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEIL-SPIEND 157
           +++      +   L +L   + + DV +    E F+AH+ +L A S  F  I    ++ +
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 158 CHPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
              I +  ++       +L+F+Y   + +   NI +V+ TA  L++  +++ 
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 75.1 bits (184), Expect = 3e-18
 Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 99  MKWQNFQVHLAFELYQLLKMESMVDVTLKAEGEAFQAHRIILSASSPFFQEILSPIENDC 158
           ++  +    L  +  Q+    ++ DV +  + + F AHR +L+ +S  F+     + +  
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEI----LFHRN 61

Query: 159 HPIVILADVPANDVKAILEFIYYGEIKVEGANIFSVLKTAQNLKISALLEA 209
                L  +     + ILE+ Y   ++ +  ++  +L  A+ L+I  L E 
Sbjct: 62  SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112


>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain)
           {Escherichia coli [TaxId: 562]}
          Length = 271

 Score = 27.1 bits (58), Expect = 1.6
 Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 138 IILSASSPFFQEILSPIENDCHPI---VILADVPANDVKAILEFI 179
              S +     +I++ I +    +   V+++ V  + V+A    +
Sbjct: 6   ATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAV 50


>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 24.8 bits (54), Expect = 5.4
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)

Query: 53  LDGSHCSVDEFFMSV---DDGGSVPVPQPE 79
           ++     VD     +   ++G  VPVP   
Sbjct: 76  IENLVAVVDLEQKKIVKIEEGPVVPVPMTA 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 742,301
Number of extensions: 31877
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 6
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)