BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6037
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 219/273 (80%), Gaps = 3/273 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
IDD KYCGH+YGLG + + + GNA E +
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 219/273 (80%), Gaps = 3/273 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
IDD KYCGH+YGLG + + + GNA E +
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/267 (69%), Positives = 217/267 (81%), Gaps = 3/267 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
IDD KYCGH+YGLG + + + GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/267 (69%), Positives = 217/267 (81%), Gaps = 3/267 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
IDD KYCGH+YGLG + + + GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 218/267 (81%), Gaps = 3/267 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR + +NYI +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL +SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L ++ LP EE +FFE+ RLFF
Sbjct: 131 IETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSK-LPDEEVDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
IDD KYCGH+YGLG + + + GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 216/267 (80%), Gaps = 3/267 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ ++ IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL +SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFVNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAEL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP E +FFE+ RLFF
Sbjct: 131 IETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEVELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
IDD KYCGH+YGLG + + + GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 216/267 (80%), Gaps = 3/267 (1%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ ++ IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL +SGIQF++H+EEG
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAEL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP E +FFE+ RLFF
Sbjct: 131 IETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEVEQDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
IDD KYCGH+YGLG + + + GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/254 (70%), Positives = 209/254 (82%), Gaps = 2/254 (0%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/254 (70%), Positives = 209/254 (82%), Gaps = 2/254 (0%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/273 (52%), Positives = 190/273 (69%), Gaps = 8/273 (2%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IR+VW+ N+Q+E I SLI Y + +DTEFPGVVA+PLG F+S+ +Y Y L+ NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQIGL D + P TWQFNF F+LQ+DMYA +SI+LL SGI F++H+E G
Sbjct: 85 LKIIQIGLALSDEEGNAPVEA-CTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVG 143
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IEPADFAELL SG+VL ++V W++FHSGYDF YLLK M LP+E EF+++ ++F
Sbjct: 144 IEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLK-AMTQIPLPAEYEEFYKILCIYF 202
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
YD+KY+MKS N GLQ++A+ L + RIGPQHQAGSD+LLT R+FF++R +F+ +
Sbjct: 203 PKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGS 262
Query: 254 IDDDKYCGHIYGLGPAG---WNGHTNGNAENIE 283
I D + +YGLG G W H N + I+
Sbjct: 263 I-DSRMLNQLYGLGSTGSVLW--HNNSSTPQIQ 292
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/259 (50%), Positives = 185/259 (71%), Gaps = 8/259 (3%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVW N++ E IR +++ + ++ +DTEFPG+V +P+G F++ +EY Y LK NV++
Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71
Query: 74 LKIIQIGLTFFDSK----SCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQR 128
LK+IQ+GLTF D K +C + WQFNF+ FDL+ D+YA DSI+LL+ SGI F +
Sbjct: 72 LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVK 131
Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
+ E GI+ FAELL +SG+VLN+ V W++FHSGYDFGYLLKLL ++LP + FFE+
Sbjct: 132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT-CQNLPETQTGFFEM 190
Query: 189 QRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
++F +YD+K+LMK C +L GGL ++AE LD+ R+G HQAGSDSLLT F K++E
Sbjct: 191 ISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQEN 250
Query: 249 FFEDAIDDDKYCGHIYGLG 267
FF ++ +KY G +YGLG
Sbjct: 251 FFIGSM--EKYSGVLYGLG 267
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 260 bits (664), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/258 (49%), Positives = 183/258 (70%), Gaps = 7/258 (2%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVW N+QEE IR +++ + Y+ +DTEFPG+V +P+G F+S ++Y Y LK NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 74 LKIIQIGLTFFDSKSCTPPG---PFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRH 129
LK+IQ+GLTF + + P + WQFNF+ FDL D++A DSI+LL+ SGI ++
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131
Query: 130 KEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQ 189
+GI+ FAELL +SG+VLN+ V W++FHSGYDFGYLLKLL ++LP + +FF+L
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT-CQNLPDSQTDFFKLI 190
Query: 190 RLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249
++F ++YD+K+LMK C +L GGL ++AE L++ R+G HQAGSDSLLT F K++E F
Sbjct: 191 NVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENF 250
Query: 250 FEDAIDDDKYCGHIYGLG 267
F + KY G +YGLG
Sbjct: 251 FVGPL--HKYSGVLYGLG 266
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 253 bits (647), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 179/258 (69%), Gaps = 7/258 (2%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVW N+ EEF IR +++ ++YI +DTEFPGVV KP+ F+ ++ Y LK NVDL
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPG---PFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRH 129
LK+IQ+GLTF D P F WQFNF+ F++ ED+YA +SI+LL+ GI F+++
Sbjct: 72 LKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131
Query: 130 KEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQ 189
E+GI+ F EL+ +SG+VLND + W++FH GYDFGYL+KLL + LP ++A+FF+L
Sbjct: 132 IEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLT-CKELPLKQADFFKLL 190
Query: 190 RLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249
++F ++YD+K+LM C L GGL +AE + + R+G HQAGSDSLLT F K++E +
Sbjct: 191 YVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERY 250
Query: 250 FEDAIDDDKYCGHIYGLG 267
F + +KY G +YGLG
Sbjct: 251 FPGST--EKYTGVLYGLG 266
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/276 (44%), Positives = 178/276 (64%), Gaps = 10/276 (3%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I V+ NV+EEF IR + Y Y+ +DTEFPGVVA PLG FRS ++ Y + NV++
Sbjct: 23 IHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVNM 82
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LK+IQ+G + K PP WQFNF F EDM++ +S+++L+ +GI F + G
Sbjct: 83 LKLIQVGFAMVNDKGELPPTG-DVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNG 141
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLK-LLMGTRSLPSEEAEFFELQRLF 192
I A F ELLTTSG++ + ++ WL+F SGYDFGYLLK + +G LP EE+ FF +
Sbjct: 142 IPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLG--DLPKEESTFFMCHKTL 199
Query: 193 FKSIYDVKYLMKS--CKN--LKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
F + +D+K L+++ C + LKGGLQEVA+QLD+ R G +HQAGSD+LLT FFK+++
Sbjct: 200 FPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQ 259
Query: 249 FFEDAIDD--DKYCGHIYGLGPAGWNGHTNGNAENI 282
FF D + CGH++GLG + H++G+ +
Sbjct: 260 FFGDNWNQIAPLICGHMFGLGSSLSLFHSSGSTSRL 295
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 174/274 (63%), Gaps = 14/274 (5%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPL------GDFRSTSEYQYHFL 67
IREVW N+++E I I+ + Y+ +DTEFPG+V K + + EY Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPP---GPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSG 123
K NV++LK+IQ+GLT D K P WQFNF+ F++ DM+A DSI+LL+ S
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135
Query: 124 IQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEA 183
I +++ E G++ FAELL SGVVLNDK+ W++FH GYDFGYLLKLL G + LP E +
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSG-KELPEEIS 194
Query: 184 EFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFF 243
+FF+ FF +YD+KYLM C NL GGL+++AE L + R+G HQAGSDSLLT R F
Sbjct: 195 DFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFI 254
Query: 244 KMRELFFEDAIDDDKYCGHIYGL-GPAGWNGHTN 276
KM+E FF ++ KY G ++GL P G N
Sbjct: 255 KMKEFFFTGSL--LKYSGFLFGLDNPRLLTGSKN 286
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 171/265 (64%), Gaps = 15/265 (5%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDF--RSTSEYQYHFLKINV 71
IR+VWA N++ EF IR ++ Y +I +DTEFPGV+ K D R Y Y+ LK NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 72 DLLKIIQIGLTFFDSKSCTP-----PGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQ 125
D L +IQ+GLT D+ P W+FNF+ FD++ D +A DSI+LL+ GI
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133
Query: 126 FQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEF 185
F+R++ EG+E FAEL+ +SG++ N+ V W++FHS YDFGYL+K+L R LP EF
Sbjct: 134 FERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILT-RRQLPVALREF 192
Query: 186 FELQRLFF-KSIYDVKYLMKSC-KNLKGGLQEVAEQLDLSR-IGPQHQAGSDSLLTGRVF 242
L R FF +YDVK++M+ C + L GGL VA L+++R +G HQAGSDSLLT + F
Sbjct: 193 LGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAF 252
Query: 243 FKMRELFF-EDAIDDDKYCGHIYGL 266
+MR+L+F ED +K+ G +YGL
Sbjct: 253 QRMRDLYFVEDGA--EKHAGVLYGL 275
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 169/264 (64%), Gaps = 18/264 (6%)
Query: 15 REVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTS-EYQYHFLKINVDL 73
REVWA N++ EF I +I+ Y +I +DTEFPGV+ K D R T+ + Y LK NVD
Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFK--SDLRFTNPDDLYTLLKANVDA 77
Query: 74 LKIIQIGLTFFDSKSCTPP-----GPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQ 127
L +IQ+GLT D P W+FNF+ FD+ D +A DSI+LL+ GI F+
Sbjct: 78 LSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFE 137
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
R+ +G+E FAEL+ +SG+V N++V W++FHS YDFGYL+K+L R LP EF
Sbjct: 138 RNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILT-RRELPGALGEFKR 196
Query: 188 LQRLFF-KSIYDVKYLMKSC-KNLKGGLQEVAEQLDLSR-IGPQHQAGSDSLLTGRVFFK 244
+ R+ F + +YDVK++MK C + L GGL VA L+++R +G HQAGSDSLLT F +
Sbjct: 197 VMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQR 256
Query: 245 MRELFFEDAIDD--DKYCGHIYGL 266
MR+L+F + D +K+ G +YGL
Sbjct: 257 MRDLYF---VQDGPEKHAGVLYGL 277
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 155/271 (57%), Gaps = 19/271 (7%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
+R+VW N+ EF IR L++ YN++ I TEF G +A+P+G FRS +Y Y ++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
L IQ+GL+ D+ P +TWQFNF+FD ++++ + +S++LL+ SGI F++H+ G
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTESLELLRKSGINFEKHENLG 279
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ +F++LL SG++++D V W+++H+ YD G+L+ +LM S+P+ + +F +
Sbjct: 280 IDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMND-SMPNNKEDFEWWVHQYM 338
Query: 194 KSIYDVKYLMKSCKNLKG---------------GLQEVAEQLDLSRIGPQHQAGSDSLLT 238
+ YD+ + K + K L +A++L L R G SLL
Sbjct: 339 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLM 398
Query: 239 GRVFFKMRELF---FEDAIDDDKYCGHIYGL 266
F ++ +L F + D KY G IYG+
Sbjct: 399 LLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 130/238 (54%), Gaps = 19/238 (7%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N + E IR + + I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTH 65
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+IQ+G T FD + G TW+ N FD + SI L+++G+ + +EEGI
Sbjct: 66 LIQLGFTLFDRR-----GFAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI 120
Query: 135 EP----ADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQ 189
DF+++LT + K+ W++F YD YL+K L G + LP + EF E +Q
Sbjct: 121 GIDEFFRDFSQILTEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQ 176
Query: 190 RLFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
+L K ++DVK + +SC L GLQ +A+ L + R+G H AGSDS LT RVF K+
Sbjct: 177 QLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 124/237 (52%), Gaps = 19/237 (8%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N Q E IR + N I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMD--ASDEIRYRDMKFNVDNTH 61
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+IQ+GLT F G TW+ N F+ + + SI L+N+G+ + +EEGI
Sbjct: 62 LIQLGLTLFGK------GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115
Query: 135 EPADFAELLTTSGVVLNDK---VKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQR 190
E +LN+K ++W++F YD YLLK L + LP EF E +Q+
Sbjct: 116 ---GIEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLT-RKPLPETSKEFDETVQQ 171
Query: 191 LFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
L + +YDVK + C L GLQ +A+ L + R+G H AGSDS LT RVF K+
Sbjct: 172 LLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 19/238 (7%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N + E IR + ++ I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTH 60
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+IQ+G T FD + T TW+ N F+ + SI L+++G+ + EEGI
Sbjct: 61 LIQLGFTLFDRRGITK-----TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGI 115
Query: 135 EPA----DFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQ 189
DF+++L + K+ W++F YD YL+K L G + LP + EF E ++
Sbjct: 116 GIEEFFRDFSQILKEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVE 171
Query: 190 RLFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
+L K ++DVK + +SC L GLQ +A+ L + R+G H AGSDS LT RVF K+
Sbjct: 172 QLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 17/258 (6%)
Query: 15 REVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLL 74
R VW NV EE + + + I DTE+PG++ + F S+S+ Y +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 75 KIIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
K+IQ G T F++K W+ NF F D + SI+ L+ G+ Q+ ++EG
Sbjct: 68 KLIQCGFTLFNAKGEIG----GVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEG 123
Query: 134 IEPADFAELLTTSGVVLNDK-VKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLF 192
++ + V + K V++++F YDF Y L +L + LP EF
Sbjct: 124 VDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGK-LPETHGEFATEVVKV 182
Query: 193 FKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFF 250
F +YD K + C+ L GL ++A+ L ++R+G H AGSDSL+T VF K++ ++
Sbjct: 183 FGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVY- 241
Query: 251 EDAIDDDKYC-GHIYGLG 267
+D ++ G IYG+G
Sbjct: 242 ----EDSRFARGLIYGIG 255
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 9/219 (4%)
Query: 29 IRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKS 88
I + +Y +I IDTEFP + + +T E +Y + +VD K+IQ+GLT FD
Sbjct: 4 IEDCLRSYRFIAIDTEFPSTLRETTQ--HATDEERYMDMSFSVDRAKLIQLGLTLFDING 61
Query: 89 CTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGV 148
TW+ NF +D + SI+ L+ +G+ ++ +EEGI F +
Sbjct: 62 RIGG----TWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLK 117
Query: 149 VLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKN 208
+ W++FH YD YLLK G +LP F + S+YD+K + C+
Sbjct: 118 KTRRNITWVTFHGSYDIAYLLKGFTG-EALPVTSERFSKAVARVLGSVYDLKVMAGRCEG 176
Query: 209 LKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
L GL+ +A + L+R+G H AGS++ LT VF K+
Sbjct: 177 LSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKV 215
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
E+ +N E + +++ +Y+ ID EF G++ + ++T + +Y L+ +
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61
Query: 76 IIQIGLTFF-----DSKSCTPPGPFTTWQFNFKFDLQEDMYAQ-DSIDLLQNSGIQFQRH 129
I+QIG+TF SC P + + L+ D ++ SI L G F +
Sbjct: 62 ILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQ 121
Query: 130 KEEGI 134
EG+
Sbjct: 122 LTEGV 126
>sp|Q5R737|LMBL2_PONAB Lethal(3)malignant brain tumor-like protein 2 OS=Pongo abelii
GN=L3MBTL2 PE=2 SV=1
Length = 705
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 166 GYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRI 225
GYL+K L+G+R+LP + K + +KY + L E +D S++
Sbjct: 295 GYLMKRLVGSRTLPVD---------FHIKMVESMKYPFRQGMRL--------EVVDKSQV 337
Query: 226 GPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYG--LGPAGWN 272
A D+++ GR+ L +ED DD + H++ + P GW+
Sbjct: 338 SRTRMAVVDTVIGGRL-----RLLYEDGDSDDDFWCHMWSPLIHPVGWS 381
>sp|Q969R5|LMBL2_HUMAN Lethal(3)malignant brain tumor-like protein 2 OS=Homo sapiens
GN=L3MBTL2 PE=1 SV=1
Length = 705
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 166 GYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRI 225
GYL+K L+G+R+LP + K + +KY + L E +D S++
Sbjct: 295 GYLMKRLVGSRTLPVD---------FHIKMVESMKYPFRQGMRL--------EVVDKSQV 337
Query: 226 GPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYG--LGPAGWN 272
A D+++ GR+ L +ED DD + H++ + P GW+
Sbjct: 338 SRTRMAVVDTVIGGRL-----RLLYEDGDSDDDFWCHMWSPLIHPVGWS 381
>sp|Q1JQD9|LMBL2_BOVIN Lethal(3)malignant brain tumor-like protein 2 OS=Bos taurus
GN=L3MBTL2 PE=2 SV=1
Length = 706
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 166 GYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRI 225
GYL+K L+G+R+LP + K + +KY + L E +D S++
Sbjct: 296 GYLMKRLVGSRTLPVD---------FHIKMVESMKYPFRQGMRL--------EVVDKSQV 338
Query: 226 GPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYG--LGPAGWN 272
A D+++ GR+ L +ED DD + H++ + P GW+
Sbjct: 339 SRTRMAVVDTVIGGRL-----RLLYEDGDSDDDFWCHMWSPLIHPVGWS 382
>sp|P59178|LMBL2_MOUSE Lethal(3)malignant brain tumor-like protein 2 OS=Mus musculus
GN=L3mbtl2 PE=1 SV=2
Length = 703
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 24/108 (22%)
Query: 167 YLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIG 226
YL+K L+G+R+LP++ K + +KY + +G EV ++ +SR
Sbjct: 296 YLMKRLVGSRTLPAD---------FHIKMVESMKYPFR-----QGMRLEVVDKTQVSRT- 340
Query: 227 PQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYG--LGPAGWN 272
A D+++ GR+ L +ED DD + H++ + P GW+
Sbjct: 341 --RMAVVDTVIGGRL-----RLLYEDGDSDDDFWCHMWSPLIHPVGWS 381
>sp|Q3MIF2|LMBL2_RAT Lethal(3)malignant brain tumor-like protein 2 OS=Rattus norvegicus
GN=L3mbtl2 PE=2 SV=1
Length = 703
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 24/108 (22%)
Query: 167 YLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIG 226
YL+K L+G+R+LP++ K + +KY + +G EV ++ +SR
Sbjct: 296 YLMKRLVGSRTLPAD---------FHIKMVESMKYPFR-----QGMRLEVVDKTQVSRT- 340
Query: 227 PQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYG--LGPAGWN 272
A D+++ GR+ L +ED DD + H++ + P GW+
Sbjct: 341 --RMAVVDTVIGGRL-----RLLYEDGDSDDDFWCHMWSPLIHPVGWS 381
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 12 YGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKI-- 69
+ ++ V N + +RSL+ +++ ID E GV + P D Y +LK+
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 70 NVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNF--------KFD--LQEDMYAQDSIDLL 119
+ + ++Q G+ F S T F ++ NF FD E + S+D L
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQ--SFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFL 153
Query: 120 QNSGIQFQRHKEEGI 134
F EGI
Sbjct: 154 AKYQFDFNTCIHEGI 168
>sp|A4YI28|SYL2_METS5 Leucine--tRNA ligase 2 OS=Metallosphaera sedula (strain ATCC 51363
/ DSM 5348) GN=leuS2 PE=3 SV=1
Length = 950
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 103 KFDLQEDMYAQDSI---DLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSF 159
K Q D+ + + DLL+ I KE I PADF + T +GVV++ +
Sbjct: 266 KLKFQTDVKVLEKVSGSDLLKIVAINPITGKEIPILPADFVDPTTATGVVMS-----VPA 320
Query: 160 HSGYDFGYLLKLLMGTRSLPSEEAE 184
H+ +D+ YL K +G +P E
Sbjct: 321 HAPFDYFYLKKAKVGIEPIPVVAVE 345
>sp|Q9NYW4|TA2R5_HUMAN Taste receptor type 2 member 5 OS=Homo sapiens GN=TAS2R5 PE=1 SV=1
Length = 299
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 71 VDLLKIIQIGLTFFDSKSCTPPG-------PFTTWQFNFKFDLQEDMYAQDSIDLLQNSG 123
++LL +QIGLTF+ PP PF +WQ+ + F L Y + L+ +
Sbjct: 136 INLLLTVQIGLTFYH-----PPQGNSSIRYPFESWQYLYAFQLNSGSYLPLVVFLVSSGM 190
Query: 124 I---QFQRHKEEGIEPA 137
+ + HK+ + A
Sbjct: 191 LIVSLYTHHKKMKVHSA 207
>sp|Q5RAR6|TOE1_PONAB Target of EGR1 protein 1 OS=Pongo abelii GN=TOE1 PE=2 SV=1
Length = 510
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 22/233 (9%)
Query: 19 ARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRS----TSEYQYHFLKINVDLL 74
+ N +E + + I T N++ +DTE G LGD +S SE +Y +
Sbjct: 41 SNNFREMWPSLLLAIKTANFVAVDTELSG-----LGDRKSLLNQCSEERYKAVCHAARTR 95
Query: 75 KIIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
I+ +GL F + + FN ++E + S+ L G F + +G
Sbjct: 96 SILSLGLACFKRQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLIQHGFNFNQQYAQG 155
Query: 134 I------EPADFAELLTTSGVVLN--DKVKWLSFHSGY-DFGYLLKLLMGTRSLPSEEAE 184
I + D ++ + + L + L H+G D +L + LP
Sbjct: 156 IPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYA--HLPESLGT 213
Query: 185 F-FELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSL 236
F +L +F IYD KY + E A + G Q AGS L
Sbjct: 214 FTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHL 266
>sp|A2T308|YCF2_ANGEV Protein ycf2 OS=Angiopteris evecta GN=ycf2 PE=3 SV=1
Length = 2381
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 151 NDKVKWLSFHSGYDFGYLLKLLMG-TRSLPSEEAEFFE------LQRLFFK--SIYDVKY 201
N+K+K H GYD + KL++ + LP E + FE + R F + ++ Y
Sbjct: 2235 NEKIKQFFLHRGYDRNLMTKLVINWWKRLPFAEKKHFEFFNNNQMMRTFLQHPQLFSSVY 2294
Query: 202 LMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLL 237
L + C L LQE + +LS I Q S+ LL
Sbjct: 2295 LHQDC--LLEDLQEKYARFNLS-IHRQRWIRSNRLL 2327
>sp|Q6FQ36|HSM3_CANGA DNA mismatch repair protein HSM3 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=HSM3 PE=3 SV=1
Length = 481
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 3 NSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIG 40
+SVN +N I +VW + Q+E + R L N YN++
Sbjct: 145 SSVNLVN---SIEKVWKKTAQDELIRRRILENNYNFLS 179
>sp|P36433|T2H2_HAEPA Type-2 restriction enzyme HpaII OS=Haemophilus parainfluenzae
GN=hpaIIR PE=4 SV=1
Length = 358
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 3 NSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAK 51
NS++ I EK I+E+++++ + EFV + S + N IDT+ P ++A+
Sbjct: 183 NSLSGIKEK--IKEIFSQDGKLEFVKVESCKFSNNLTLIDTKLPEILAE 229
>sp|P33332|SEC3_YEAST Exocyst complex component SEC3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC3 PE=1 SV=1
Length = 1336
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 5 VNAINEKYG-IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQ 63
++A+ Y I++VW+ NV+E+ +H + N I PG++ P+G SE
Sbjct: 1042 LSAVTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEI---LPGILDLPVG--LKNSEDL 1096
Query: 64 YHFLKINVDL 73
+ F K ++D+
Sbjct: 1097 FQFAKRSMDI 1106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,528,749
Number of Sequences: 539616
Number of extensions: 4763827
Number of successful extensions: 9010
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8899
Number of HSP's gapped (non-prelim): 45
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)