Query psy6037
Match_columns 286
No_of_seqs 145 out of 443
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:54:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 2.7E-95 9E-100 675.4 24.1 261 9-271 7-267 (285)
2 2p51_A SPCC18.06C protein; DED 100.0 1E-94 3.6E-99 680.2 26.0 269 10-281 19-287 (333)
3 2d5r_A CCR4-NOT transcription 100.0 9.3E-95 3.2E-99 661.3 23.5 252 13-266 1-252 (252)
4 1uoc_A POP2; hydrolase, DEDD n 100.0 7.6E-94 2.6E-98 665.8 24.5 259 10-269 12-288 (289)
5 3d45_A Poly(A)-specific ribonu 100.0 8E-61 2.7E-65 475.1 20.2 247 14-264 2-418 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 2.9E-51 9.8E-56 399.4 18.6 232 15-250 1-398 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.8 3.6E-08 1.2E-12 87.3 13.6 188 25-251 26-223 (235)
8 1w0h_A 3'-5' exonuclease ERI1; 98.8 3.8E-07 1.3E-11 78.5 17.1 175 37-250 11-196 (204)
9 2f96_A Ribonuclease T; RNAse, 98.7 2.5E-07 8.6E-12 81.3 13.9 180 29-250 22-214 (224)
10 2xri_A ERI1 exoribonuclease 3; 98.6 2.2E-06 7.6E-11 75.5 17.0 170 37-248 32-213 (224)
11 1zbh_A 3'-5' exonuclease ERI1; 98.6 2E-06 6.9E-11 79.3 17.2 176 36-250 78-264 (299)
12 2gui_A DNA polymerase III epsi 98.6 8.3E-07 2.9E-11 76.0 12.9 173 36-248 9-184 (194)
13 3cg7_A CRN-4, cell death-relat 98.5 2.4E-06 8.2E-11 79.3 14.6 174 37-249 20-209 (308)
14 2p1j_A POLIII, DNA polymerase 98.5 2.9E-06 9.9E-11 72.5 13.7 165 33-248 9-175 (186)
15 3mxm_B Three prime repair exon 98.4 1.9E-06 6.5E-11 77.2 12.6 177 36-251 12-217 (242)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.4 2.7E-06 9.1E-11 80.5 12.1 176 36-250 128-314 (349)
17 2qxf_A Exodeoxyribonuclease I; 98.3 9.3E-06 3.2E-10 80.0 13.9 178 33-248 6-200 (482)
18 1y97_A Three prime repair exon 98.3 1.5E-05 5E-10 70.3 13.7 173 36-250 10-211 (238)
19 3u3y_B Three prime repair exon 98.1 2.3E-05 7.9E-10 73.3 12.7 177 37-251 13-217 (314)
20 1wlj_A Interferon stimulated g 98.1 2E-05 6.7E-10 67.5 11.3 160 35-252 4-172 (189)
21 2igi_A Oligoribonuclease; RNAs 98.0 0.00012 4E-09 61.7 12.8 169 35-250 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 97.5 0.00044 1.5E-08 59.4 9.2 171 34-251 7-183 (194)
23 3tr8_A Oligoribonuclease; tran 97.1 0.0075 2.6E-07 51.9 12.7 169 34-252 7-184 (186)
24 2kfn_A Klenow fragment of DNA 96.0 0.12 4.2E-06 51.7 14.7 158 23-250 13-194 (605)
25 2hbj_A Exosome complex exonucl 56.4 27 0.00092 33.0 7.4 84 150-251 156-256 (410)
26 4i4d_A Peptide synthetase NRPS 40.2 35 0.0012 24.7 4.4 37 214-250 23-62 (93)
27 1dny_A Non-ribosomal peptide s 37.3 34 0.0011 24.9 3.8 35 215-249 22-59 (91)
28 1yt3_A Ribonuclease D, RNAse D 36.2 86 0.0029 28.8 7.3 83 151-250 72-171 (375)
29 3saf_A Exosome component 10; e 35.5 73 0.0025 30.4 6.8 84 150-251 179-279 (428)
30 2fi0_A Conserved domain protei 34.6 29 0.001 25.2 3.0 36 113-148 23-75 (81)
31 1vk0_A Hypothetical protein; h 27.4 90 0.0031 26.5 5.4 81 150-247 105-205 (206)
32 1dp7_P MHC class II transcript 24.8 83 0.0028 22.9 4.0 30 166-196 25-54 (76)
33 1jf8_A Arsenate reductase; ptp 22.3 55 0.0019 25.6 2.9 31 110-140 43-73 (131)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-95 Score=675.40 Aligned_cols=261 Identities=70% Similarity=1.194 Sum_probs=252.0
Q ss_pred cCcccEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCC
Q psy6037 9 NEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKS 88 (286)
Q Consensus 9 ~~~~~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g 88 (286)
..+.+|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++|+||+++|+|||.++|||+|||+|+++|
T Consensus 7 ~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g 86 (285)
T 4gmj_B 7 DHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 86 (285)
T ss_dssp ---CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTS
T ss_pred CCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHH
Q psy6037 89 CTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYL 168 (286)
Q Consensus 89 ~~p~~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL 168 (286)
+.|.. +++|||||+|++.+|+|+++||+||+++||||+|++++|||+.+|+|+|++||++++++++||+|||+||||||
T Consensus 87 ~~p~~-~~~wqFNF~f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL 165 (285)
T 4gmj_B 87 EYPPG-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 165 (285)
T ss_dssp CCCSS-CCEEEEEBCCCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHH
T ss_pred CcCCC-eeEEEEEEEeccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHH
Confidence 99887 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 169 LKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 169 ~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
+|+|||. +||+++++|+++++.+||++||+|||++.|.++++||++||+.|+|+|+|++||||||||||++||+||+++
T Consensus 166 ~k~lt~~-~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 166 IKILTNS-NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp HHHHHTS-CCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccccceEEecCCCCC
Q psy6037 249 FFEDAIDDDKYCGHIYGLGPAGW 271 (286)
Q Consensus 249 ~~~~~~~~~~~~g~i~Gl~~~~~ 271 (286)
||+++++.++|+|+|||||+...
T Consensus 245 ~f~~~~~~~~~~g~l~Glg~~~~ 267 (285)
T 4gmj_B 245 FFEDHIDDAKYCGHLYGLGSGSS 267 (285)
T ss_dssp HHTTCCCHHHHTTCCTTSSTTC-
T ss_pred HhcCCcchHHhCCEEeccCCCCC
Confidence 99999888899999999997543
No 2
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=1e-94 Score=680.20 Aligned_cols=269 Identities=51% Similarity=0.920 Sum_probs=247.9
Q ss_pred CcccEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCC
Q psy6037 10 EKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSC 89 (286)
Q Consensus 10 ~~~~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~ 89 (286)
+.++|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++|||++|+|||.++|||||||+++++|+
T Consensus 19 ~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~ 98 (333)
T 2p51_A 19 QISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGN 98 (333)
T ss_dssp CSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSC
T ss_pred CCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHH
Q psy6037 90 TPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLL 169 (286)
Q Consensus 90 ~p~~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~ 169 (286)
.|.. +++|||||+|+..+|+|+++||+||+++||||+|++++|||+.+|+|+|++||||++++|+||+|||+||||||+
T Consensus 99 ~p~~-~~twqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLl 177 (333)
T 2p51_A 99 APVE-ACTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLL 177 (333)
T ss_dssp CCTT-CSEEEEEBCCCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHH
T ss_pred CCCC-ceeEEEEEEECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHH
Confidence 9887 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHh
Q psy6037 170 KLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249 (286)
Q Consensus 170 K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~ 249 (286)
|+||+. +||+++++|+++|+.+||++||+|||++.|.+++|||++||+.|+|+|+|++||||||||||++||+||++.+
T Consensus 178 K~Lt~~-~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 178 KAMTQI-PLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHCS-CCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHCcchhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 999997 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccceEEecCCCCCCCCCCCcccc
Q psy6037 250 FEDAIDDDKYCGHIYGLGPAGWNGHTNGNAEN 281 (286)
Q Consensus 250 ~~~~~~~~~~~g~i~Gl~~~~~~~~~~~~~~~ 281 (286)
|.+. +.++++|+|||||+.+.+...+++++-
T Consensus 257 f~~~-~~~~~~g~l~Gl~~~~~~~~~~~~~~~ 287 (333)
T 2p51_A 257 FDGS-IDSRMLNQLYGLGSTGSVLWHNNSSTP 287 (333)
T ss_dssp HTTS-CCGGGTTCCTTC---------------
T ss_pred cCCC-chhhhCCEEeccCcCchhhhccCCCcc
Confidence 9876 568999999999999887777776654
No 3
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=9.3e-95 Score=661.32 Aligned_cols=252 Identities=72% Similarity=1.230 Sum_probs=246.9
Q ss_pred cEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCC
Q psy6037 13 GIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPP 92 (286)
Q Consensus 13 ~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~ 92 (286)
+|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||+++++|+.|+
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~ 80 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCC
Confidence 48999999999999999999999999999999999999999999989999999999999999999999999999999987
Q ss_pred CCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHH
Q psy6037 93 GPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLL 172 (286)
Q Consensus 93 ~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~l 172 (286)
. +++|||||+|+..+|+|+++||+||+++||||+|++++|||+.+|+|+|++|||+++++|+||||||+||||||+|+|
T Consensus 81 ~-~~~wqFNF~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L 159 (252)
T 2d5r_A 81 G-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKIL 159 (252)
T ss_dssp S-CCEEEEEBCCCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHH
T ss_pred C-ceeEEEEEEECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHh
Confidence 6 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhcCC
Q psy6037 173 MGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFED 252 (286)
Q Consensus 173 t~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~~~ 252 (286)
||. +||+++++|.++++.+||++||+|||++.|.++++||++||+.||++|+|++|||||||+||++||+||++.+|++
T Consensus 160 ~~~-~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~~ 238 (252)
T 2d5r_A 160 TNS-NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFED 238 (252)
T ss_dssp HTS-CCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred cCC-CCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcCC
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccceEEec
Q psy6037 253 AIDDDKYCGHIYGL 266 (286)
Q Consensus 253 ~~~~~~~~g~i~Gl 266 (286)
+++.++++|+||||
T Consensus 239 ~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 239 HIDDAKYCGHLYGL 252 (252)
T ss_dssp SCCHHHHTTBCTTC
T ss_pred CCCHHHcCCEecCC
Confidence 88778999999997
No 4
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=7.6e-94 Score=665.79 Aligned_cols=259 Identities=36% Similarity=0.720 Sum_probs=238.9
Q ss_pred CcccEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCC
Q psy6037 10 EKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSC 89 (286)
Q Consensus 10 ~~~~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~ 89 (286)
+.++|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||+++++|+
T Consensus 12 ~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~ 91 (289)
T 1uoc_A 12 NYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGN 91 (289)
T ss_dssp GGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCC
T ss_pred CCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCC
Confidence 35889999999999999999999999999999999999999999889888999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHH
Q psy6037 90 TPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLL 169 (286)
Q Consensus 90 ~p~~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~ 169 (286)
.|+..+++|||||+|+..+|+|+++||+||+++||||+|++++|||+.+|+|+|++||||++++|+||+|||+||||||+
T Consensus 92 ~p~~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~ 171 (289)
T 1uoc_A 92 KPDNGPSTWQFNFEFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLI 171 (289)
T ss_dssp CCSSSCSEEEEEBCCCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHH
T ss_pred cCCCCcceEEEEEEECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHH
Confidence 98755899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccc---------------cHHHHHhHcCCccCCCCcccchh
Q psy6037 170 KLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKG---------------GLQEVAEQLDLSRIGPQHQAGSD 234 (286)
Q Consensus 170 K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~g---------------gL~~lA~~L~v~r~g~~HqAGsD 234 (286)
|+||++ +||+++++|+++|+.+||++||+|||++.|.++++ ||++||+.|||+|+|++||||||
T Consensus 172 k~Lt~~-~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsD 250 (289)
T 1uoc_A 172 NILMND-SMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQ 250 (289)
T ss_dssp HHHTTS-CCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHH
T ss_pred HHhccc-cCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHH
Confidence 999997 99999999999999999999999999999987776 69999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcC---CCCCcccccceEEecCCC
Q psy6037 235 SLLTGRVFFKMRELFFE---DAIDDDKYCGHIYGLGPA 269 (286)
Q Consensus 235 SllT~~~F~~l~~~~~~---~~~~~~~~~g~i~Gl~~~ 269 (286)
|+||++||+||++.+|. ++.+.++++|+|||||..
T Consensus 251 SllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 251 SLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 99999999999999874 445678999999999864
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=8e-61 Score=475.11 Aligned_cols=247 Identities=22% Similarity=0.315 Sum_probs=205.6
Q ss_pred EEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCC----CCCChHHHHHHHHhhhhcccceeeeeeeecCCCC
Q psy6037 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGD----FRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSC 89 (286)
Q Consensus 14 i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~----~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~ 89 (286)
|+|||++||+++|+.|+++|++|+||||||||||++.+|.+. +.++++++|+++|+||+.++|||+|||+|+++|+
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 789999999999999999999999999999999999988643 3567999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEE-ecC-----CCc---ccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHH-----------hcC--
Q psy6037 90 TPPGPFTTWQFNFK-FDL-----QED---MYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLT-----------TSG-- 147 (286)
Q Consensus 90 ~p~~~~~~wqFNF~-F~~-----~~d---~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~-----------~Sg-- 147 (286)
.+ .|++|||||+ |+. ..| +|+++||+||+++||||||+.++||||..++|+.. .+|
T Consensus 82 ~~--~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~~ 159 (507)
T 3d45_A 82 DS--KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAG 159 (507)
T ss_dssp SS--CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC---------
T ss_pred CC--ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhccc
Confidence 64 3899999999 876 444 99999999999999999999999999987766532 121
Q ss_pred -----------------------------------cc---cc--------------------------------------
Q psy6037 148 -----------------------------------VV---LN-------------------------------------- 151 (286)
Q Consensus 148 -----------------------------------Lv---~~-------------------------------------- 151 (286)
|. ++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v~~~ 239 (507)
T 3d45_A 160 ALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKV 239 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEEEeC
Confidence 11 01
Q ss_pred -----------------------------------CCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcCCc
Q psy6037 152 -----------------------------------DKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSI 196 (286)
Q Consensus 152 -----------------------------------~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~i 196 (286)
.+..||.||+.+|++||++.|++ |||+++++|++.++.+||.|
T Consensus 240 ~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~--pLP~~~~eFk~~i~~lFP~i 317 (507)
T 3d45_A 240 DEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYC--PLPADLNEFKEMAICVFPRL 317 (507)
T ss_dssp ------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTC--SCCSSHHHHHHHHHHHCSCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCce
Confidence 14689999999999999999996 99999999999999999999
Q ss_pred cchhHHHHh--hccc--cccHHHHHhHcC-----Ccc-------------CCCCcccchhhHHHHHHHHHHHHHhcC---
Q psy6037 197 YDVKYLMKS--CKNL--KGGLQEVAEQLD-----LSR-------------IGPQHQAGSDSLLTGRVFFKMRELFFE--- 251 (286)
Q Consensus 197 YD~K~l~~~--~~~l--~ggL~~lA~~L~-----v~r-------------~g~~HqAGsDSllT~~~F~~l~~~~~~--- 251 (286)
||||||++. +..+ .++|+.|++.|+ +++ .|+.||||+|||||+.||.+|+..+..
T Consensus 318 ~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~~~~ 397 (507)
T 3d45_A 318 LDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLS 397 (507)
T ss_dssp EEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC---
T ss_pred eEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999987 3344 578999999997 444 467899999999999999999987751
Q ss_pred -CCC-------CcccccceEE
Q psy6037 252 -DAI-------DDDKYCGHIY 264 (286)
Q Consensus 252 -~~~-------~~~~~~g~i~ 264 (286)
... -.+.+.|+|+
T Consensus 398 ~~~~~~~~~~~~l~~~~N~l~ 418 (507)
T 3d45_A 398 PPKMCVSARSKLIEPFFNKLF 418 (507)
T ss_dssp ------CCSCSSSGGGTTEEC
T ss_pred CcccccccchhHHHhhheeee
Confidence 110 1356888888
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=2.9e-51 Score=399.44 Aligned_cols=232 Identities=23% Similarity=0.337 Sum_probs=190.1
Q ss_pred EeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCC----CCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCC
Q psy6037 15 REVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLG----DFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCT 90 (286)
Q Consensus 15 ~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~----~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~ 90 (286)
.|||++||.+.|+.|+++|++|+||||||||||++.+|.. ...+++++||+++|+||+.++|||+|||+|+++|+.
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 3899999999999999999999999999999999998862 234578999999999999999999999999999987
Q ss_pred CCCCcceEEEEEE-e----cC----CCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHH------HH-----------
Q psy6037 91 PPGPFTTWQFNFK-F----DL----QEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAEL------LT----------- 144 (286)
Q Consensus 91 p~~~~~~wqFNF~-F----~~----~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~el------l~----------- 144 (286)
+ .|++|||||+ | +. ..|+|+++||+||+++|||||++.++||||..++|. +.
T Consensus 81 ~--~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~ 158 (430)
T 2a1r_A 81 S--KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGA 158 (430)
T ss_dssp T--EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC---------------
T ss_pred C--ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhccccc
Confidence 5 3899999999 8 43 258999999999999999999999999999543222 00
Q ss_pred -------h---------------------------------------cCc----------------c-------------
Q psy6037 145 -------T---------------------------------------SGV----------------V------------- 149 (286)
Q Consensus 145 -------~---------------------------------------SgL----------------v------------- 149 (286)
. +|. +
T Consensus 159 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~~~~ 238 (430)
T 2a1r_A 159 LSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERY 238 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCCceE
Confidence 0 000 0
Q ss_pred ---------------------------ccCCccE------------EEeecchhHHHHHHHHhCCCCCCCChHHHHHHHH
Q psy6037 150 ---------------------------LNDKVKW------------LSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQR 190 (286)
Q Consensus 150 ---------------------------~~~~v~W------------vtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~ 190 (286)
...+++| |.+++.+|+.|+++.+.| |||+++++|.+.++
T Consensus 239 v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~--pLP~~~~eFk~~i~ 316 (430)
T 2a1r_A 239 IVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYC--PLPADLSEFKEMTT 316 (430)
T ss_dssp ------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTC--CCCSSHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhcc--CCCCCHHHHHHHHH
Confidence 0001234 566788999999999998 89999999999999
Q ss_pred hhcCCccchhHHHHhhc--cc--cccHHHHHhHcCCc------------------cCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 191 LFFKSIYDVKYLMKSCK--NL--KGGLQEVAEQLDLS------------------RIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 191 ~~FP~iYD~K~l~~~~~--~l--~ggL~~lA~~L~v~------------------r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
.+||.|||||||+..+. .+ ..+|+.|.+.|.-. ..+..|+||+||+||+.||.+|...
T Consensus 317 ~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 317 CVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp HHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 22 25799999987521 1356899999999999999999987
Q ss_pred hc
Q psy6037 249 FF 250 (286)
Q Consensus 249 ~~ 250 (286)
+.
T Consensus 397 l~ 398 (430)
T 2a1r_A 397 LG 398 (430)
T ss_dssp HG
T ss_pred Hh
Confidence 64
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.85 E-value=3.6e-08 Score=87.27 Aligned_cols=188 Identities=12% Similarity=0.154 Sum_probs=124.8
Q ss_pred HHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeec--CCCCCCCCCcceEEEEE
Q psy6037 25 EFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFD--SKSCTPPGPFTTWQFNF 102 (286)
Q Consensus 25 e~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~--~~g~~p~~~~~~wqFNF 102 (286)
++..+...++...||++|+|-+|+... .-.|||+|+..++ ++|+. ...-.|+.
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~---------------------~~~IieIgav~~~~~~~g~i----~~~~~f~~ 80 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK---------------------TDALLEIAAITLKMDEQGWL----MPDTTLHF 80 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE----EEEEEEEE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC---------------------CCeEEEEEEEEEEEcCCCcc----cccceEEE
Confidence 444566678899999999999998421 1248999999876 45653 23567777
Q ss_pred EecCC-CcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhc--Cccc---cCCccEEEeecchhHHHHHHHHhCCC
Q psy6037 103 KFDLQ-EDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTS--GVVL---NDKVKWLSFHSGYDFGYLLKLLMGTR 176 (286)
Q Consensus 103 ~F~~~-~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~S--gLv~---~~~v~Wvtfhg~yD~gyL~K~lt~~~ 176 (286)
+.+.. .....+.+.+ -+||.-....+.|.+...-.+.+..- ..+. .++..+|+++..+|+.+|-+.+..-
T Consensus 81 ~v~P~~~~~i~~~~~~---i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~- 156 (235)
T 3v9w_A 81 HVEPFVGANLQPEALA---FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERA- 156 (235)
T ss_dssp EBCCCTTCBCCHHHHH---HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHT-
T ss_pred EECCCCCCCCCHHHHH---HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHc-
Confidence 76553 2344555554 47888775667788765433332220 0000 0355788888999999997766532
Q ss_pred CCCCChHHHHHHHHhhcC-CccchhHHHHhhccccccHHHHHhHcCCccCC-CCcccchhhHHHHHHHHHHHHHhcC
Q psy6037 177 SLPSEEAEFFELQRLFFK-SIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIG-PQHQAGSDSLLTGRVFFKMRELFFE 251 (286)
Q Consensus 177 ~LP~~~~~F~~~l~~~FP-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~~l~~~~~~ 251 (286)
.+|.. -+.+ .++||..+++.... ..+|..+++.+|++..+ ..|-|..|+..|+++|.+|.+++..
T Consensus 157 g~~~~---------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 157 SLKRN---------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp TCCCC---------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 23210 0111 46788888775432 23899999999999764 7899999999999999999988754
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.77 E-value=3.8e-07 Score=78.50 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=117.8
Q ss_pred CeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecC-CCCCCCCCcceEEEEEEecCCCc-ccchh
Q psy6037 37 NYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDS-KSCTPPGPFTTWQFNFKFDLQED-MYAQD 114 (286)
Q Consensus 37 ~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~-~g~~p~~~~~~wqFNF~F~~~~d-~~~~~ 114 (286)
+||++|+|-+|+...+. ...-.|||+|...++. +|+. .-+|+.+.+.... ...+.
T Consensus 11 ~~vviD~ETTGl~~~~~-----------------~~~~~Iieigav~~~~~~g~i------~~~f~~lv~P~~~~~i~~~ 67 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLNTHTLEI------EDTFQQYVRPEINTQLSDF 67 (204)
T ss_dssp EEEECCCEECCCTTCCT-----------------TSCCCEEEEEEEEEETTTCSE------EEEEEEEBCCSSSCSCCHH
T ss_pred EEEEEEEecCCcCCCCC-----------------CCCCcEEEEEEEEEECCCCEE------eeeeeeEECCCCCCccCHH
Confidence 68999999999853210 0123599999999984 6652 4467766555442 45555
Q ss_pred HHHHHHHcCCChhhhhhCCCChHH----HHHHHHhcCccccCCccEEEeecchhHH-HHHHHHhCC-CCCCCChHHHHHH
Q psy6037 115 SIDLLQNSGIQFQRHKEEGIEPAD----FAELLTTSGVVLNDKVKWLSFHSGYDFG-YLLKLLMGT-RSLPSEEAEFFEL 188 (286)
Q Consensus 115 SI~fL~~~G~DF~k~~~~GI~~~~----F~ell~~SgLv~~~~v~Wvtfhg~yD~g-yL~K~lt~~-~~LP~~~~~F~~~ 188 (286)
+.+. +||.=..+. .|.+..+ |.+.+....+ ..+....|++++.+|+. +|-+.+... .++|.
T Consensus 68 ~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-------- 134 (204)
T 1w0h_A 68 CISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-------- 134 (204)
T ss_dssp HHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG--------
T ss_pred HHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc--------
Confidence 5443 788877665 4666653 4444433322 12233578888999997 987766421 13342
Q ss_pred HHhhcCCccchhHHHHhhccc---cccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhc
Q psy6037 189 QRLFFKSIYDVKYLMKSCKNL---KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 189 l~~~FP~iYD~K~l~~~~~~l---~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
++...+|++.+++..-.. ..+|..+++.+|++..|..|-|-.|+..|+.+|.+|.+...
T Consensus 135 ---~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 135 ---FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp ---GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---cccceEEHHHHHHHHhCCCCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 223577988887654222 25799999999999888899999999999999999988643
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.70 E-value=2.5e-07 Score=81.33 Aligned_cols=180 Identities=14% Similarity=0.203 Sum_probs=121.8
Q ss_pred HHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecC--CCCCCCCCcceEEEEEEecC
Q psy6037 29 IRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDS--KSCTPPGPFTTWQFNFKFDL 106 (286)
Q Consensus 29 I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~--~g~~p~~~~~~wqFNF~F~~ 106 (286)
+..-+++.+||++|+|-+|+... .-.|||||+..++. +|+. ...-+|+.+.+.
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~g~i----~~~~~f~~lV~P 76 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA---------------------TDALLEIAATTVGMDEKGFL----FPEHTYFFRIEP 76 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE----EEEEEEEEEBCC
T ss_pred hhccccCCcEEEEEeeCCCCCCC---------------------CCeeEEEEEEEEEEcCCCcc----cccceEEEEECC
Confidence 45667888999999999997421 12599999999873 5552 135677776554
Q ss_pred C-CcccchhHHHHHHHcCCChhhhhhCCCChHH----HHHHHHhcCccc---cCCccEEEeecchhHHHHHHHHhCCCCC
Q psy6037 107 Q-EDMYAQDSIDLLQNSGIQFQRHKEEGIEPAD----FAELLTTSGVVL---NDKVKWLSFHSGYDFGYLLKLLMGTRSL 178 (286)
Q Consensus 107 ~-~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~----F~ell~~SgLv~---~~~v~Wvtfhg~yD~gyL~K~lt~~~~L 178 (286)
. .....+.+.+. +||.=....+.|.+... |.+.+.. .+. .++-..|++++.+|+.+|.+.+... .+
T Consensus 77 ~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~--~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~-g~ 150 (224)
T 2f96_A 77 FEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRK--ALKANGCKRAILVGHNSSFDLGFLNAAVART-GI 150 (224)
T ss_dssp CTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHH--HHHHTTCSEEEEEETTHHHHHHHHHHHHHHH-TC
T ss_pred CCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHH--HhhhcccCCCEEEEeChhhhHHHHHHHHHHc-CC
Confidence 3 23455555554 79987667778888653 3333321 000 1234678888899999998776532 23
Q ss_pred CCChHHHHHHHHhhc-C-CccchhHHHHhhccccccHHHHHhHcCCccCC-CCcccchhhHHHHHHHHHHHHHhc
Q psy6037 179 PSEEAEFFELQRLFF-K-SIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIG-PQHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 179 P~~~~~F~~~l~~~F-P-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
|. .-| + ..+||..+++..-. ..+|..+++.+|++..+ ..|-|-.|++.|+.+|.+|.+.+.
T Consensus 151 ~~----------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 151 KR----------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp CC----------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc----------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 21 001 1 46788877765421 23799999999998765 689999999999999999988764
No 10
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.60 E-value=2.2e-06 Score=75.53 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=113.9
Q ss_pred CeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCC-CCCCCCCcceEEEEEEecCCC-cccchh
Q psy6037 37 NYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSK-SCTPPGPFTTWQFNFKFDLQE-DMYAQD 114 (286)
Q Consensus 37 ~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~-g~~p~~~~~~wqFNF~F~~~~-d~~~~~ 114 (286)
.||++|+|.+|+.... +.-.|||+|...++.. |+ ..-+|+.+.+... ....+.
T Consensus 32 ~~vviD~ETTGl~~~~-------------------d~~~IieIgav~v~~~~~~------i~~~f~~lV~P~~~~~i~~~ 86 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI-------------------HPQEIIEFPILKLNGRTME------IESTFHMYVQPVVHPQLTPF 86 (224)
T ss_dssp EEEEECCEECCCC-CC-------------------SSCCEEEEEEEEEETTTCC------EEEEEEEECCCSSSCSCCHH
T ss_pred eEEEEEEEcCCCCCCC-------------------CCcceEEEEEEEEecCCcE------EeeeeeeEECCCCCCcCCHH
Confidence 6999999999984310 1135999999988864 33 3556777655443 245555
Q ss_pred HHHHHHHcCCChhhhhhCCCChH----HHHHHHHhcCccc-cCCccEEEeecchhHHHHH-HHHh--CCCCCCCChHHHH
Q psy6037 115 SIDLLQNSGIQFQRHKEEGIEPA----DFAELLTTSGVVL-NDKVKWLSFHSGYDFGYLL-KLLM--GTRSLPSEEAEFF 186 (286)
Q Consensus 115 SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~SgLv~-~~~v~Wvtfhg~yD~gyL~-K~lt--~~~~LP~~~~~F~ 186 (286)
+.+. +||.=..+ ..|.+.. +|.+.+....||- |....|++. |.+|+.+|+ +.+. |- ++|.
T Consensus 87 ~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~-~~p~------ 154 (224)
T 2xri_A 87 CTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGL-PVAD------ 154 (224)
T ss_dssp HHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTC-CCCG------
T ss_pred HHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCC-CCcc------
Confidence 5544 88887655 4577665 3555565666664 335678887 699999955 3322 32 4442
Q ss_pred HHHHhhcCCccchhHHHHhhccc--cccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 187 ELQRLFFKSIYDVKYLMKSCKNL--KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 187 ~~l~~~FP~iYD~K~l~~~~~~l--~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
+|....|++...+....+ ..+|..+++.+|++..|.+|-|-.|+..|+.+|.+|.+.
T Consensus 155 -----~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 155 -----YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp -----GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----cccceEeHHHHHHHHhccCCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 122466765443332222 247999999999998889999999999999999999875
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.59 E-value=2e-06 Score=79.26 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=118.6
Q ss_pred CCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecC-CCCCCCCCcceEEEEEEecCCCc-ccch
Q psy6037 36 YNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDS-KSCTPPGPFTTWQFNFKFDLQED-MYAQ 113 (286)
Q Consensus 36 ~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~-~g~~p~~~~~~wqFNF~F~~~~d-~~~~ 113 (286)
-.||++|+|-+|+...+ +...-.|||||...++. +|+ ..-.|+.+.+.... ...+
T Consensus 78 ~~~vviD~ETTGl~~~~-----------------~~~~~~IIeIgaV~v~~~~g~------i~~~f~~lV~P~~~~~i~~ 134 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE------IEDTFQQYVRPEINTQLSD 134 (299)
T ss_dssp SEEEEECCEECCCTTCC-----------------TTCCCCEEEEEEEEEETTTCC------EEEEEEEEBCCSSSCSCCH
T ss_pred ceEEEEEeecccCCCCC-----------------CCCCCceEEEEEEEEECCCCe------EeeeeeeeecCCCCCCCCH
Confidence 36899999999985321 01223599999999986 354 24567776555442 4555
Q ss_pred hHHHHHHHcCCChhhhhhCCCChHH----HHHHHHhcCccccCCccEEEeecchhHH-HHHHHHhCC-CCCCCChHHHHH
Q psy6037 114 DSIDLLQNSGIQFQRHKEEGIEPAD----FAELLTTSGVVLNDKVKWLSFHSGYDFG-YLLKLLMGT-RSLPSEEAEFFE 187 (286)
Q Consensus 114 ~SI~fL~~~G~DF~k~~~~GI~~~~----F~ell~~SgLv~~~~v~Wvtfhg~yD~g-yL~K~lt~~-~~LP~~~~~F~~ 187 (286)
.+.+. +||.=..+. .|.+..+ |.+.+...++- .+....|++++.+|+. ||-+.+... .++|.
T Consensus 135 ~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~------- 202 (299)
T 1zbh_A 135 FCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP------- 202 (299)
T ss_dssp HHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-------
T ss_pred HHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-------
Confidence 55554 788877665 4666654 44444443221 1224678899999999 998765421 14442
Q ss_pred HHHhhcCCccchhHHHHhhcccc---ccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhc
Q psy6037 188 LQRLFFKSIYDVKYLMKSCKNLK---GGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 188 ~l~~~FP~iYD~K~l~~~~~~l~---ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
++..+.|++.+.....++. -+|..+++.+|++..|.+|-|-.|++.|+.+|.+|.+...
T Consensus 203 ----~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 203 ----FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp ----GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 1234678877665432222 4799999999999888899999999999999999988653
No 12
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.56 E-value=8.3e-07 Score=76.00 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=109.1
Q ss_pred CCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCcccchhH
Q psy6037 36 YNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDS 115 (286)
Q Consensus 36 ~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~~S 115 (286)
.+||++|+|.+|+.... . | -+.-.|||+|...++ +|.. ..-.|+...+... ...+.+
T Consensus 9 ~~~vviD~ETTGl~~~~--~--------~------~~~~~Iieig~v~~~-~~~~-----~~~~f~~lv~P~~-~i~~~~ 65 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG--A--------H------YEGHKIIEIGAVEVV-NRRL-----TGNNFHVYLKPDR-LVDPEA 65 (194)
T ss_dssp CEEEEEEEEESCCCSSS--S--------T------TTTCCEEEEEEEEEE-TTEE-----CSCCEEEECCCSS-CCCHHH
T ss_pred CCEEEEEeeCCCCCCcc--c--------C------CCCCEEEEEEEEEEE-CCeE-----eccEEEEEECcCC-cCCHHH
Confidence 57999999999985321 0 0 012359999999887 3432 1123555554443 345555
Q ss_pred HHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHHhCC-CCCCCChHHHHHHHHhhcC
Q psy6037 116 IDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGT-RSLPSEEAEFFELQRLFFK 194 (286)
Q Consensus 116 I~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~-~~LP~~~~~F~~~l~~~FP 194 (286)
.+. +||.=+.+. .+.+..+-.+.+.. ++ . +-..|++++.+|+.+|-+.+..- .++|. .. .+.
T Consensus 66 ~~i---~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~ 128 (194)
T 2gui_A 66 FGV---HGIADEFLL-DKPTFAEVADEFMD--YI-R-GAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFC 128 (194)
T ss_dssp HHH---HCCCHHHHT-TSCCHHHHHHHHHH--HH-T-TSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTS
T ss_pred HHh---hCcCHHHHh-CCCCHHHHHHHHHH--HH-C-CCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccC
Confidence 443 788866654 45555443333322 11 1 22578888999999998876532 14442 10 012
Q ss_pred CccchhHHHHhh-ccccccHHHHHhHcCCccCC-CCcccchhhHHHHHHHHHHHHH
Q psy6037 195 SIYDVKYLMKSC-KNLKGGLQEVAEQLDLSRIG-PQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 195 ~iYD~K~l~~~~-~~l~ggL~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~~l~~~ 248 (286)
.++|+-.+++.. .+...+|..+++.+|++..+ ..|-|-.|+..|+.+|.+|.+.
T Consensus 129 ~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 129 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp EEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred ceeeHHHHHHHHcCCCCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 466776665543 23345899999999999887 4999999999999999998654
No 13
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.48 E-value=2.4e-06 Score=79.31 Aligned_cols=174 Identities=18% Similarity=0.263 Sum_probs=117.2
Q ss_pred CeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecC-CCCCCCCCcceEEEEEEecCCCc-ccchh
Q psy6037 37 NYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDS-KSCTPPGPFTTWQFNFKFDLQED-MYAQD 114 (286)
Q Consensus 37 ~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~-~g~~p~~~~~~wqFNF~F~~~~d-~~~~~ 114 (286)
.||++|+|.+|+.... + | .-.|||+|...++. +|+. ...-.|+-..+.... ...+.
T Consensus 20 ~~vviD~ETTGl~~~~-----d-----~--------~~eIIEIgaV~vd~~~g~i----~~~~~f~~lV~P~~~p~i~~~ 77 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ-----D-----Y--------PCEVIQFAIVAYDVPNDKI----REDISFNKYVKPVLNRTLTKN 77 (308)
T ss_dssp EEEEEEEEECCBTTBC-----S-----C--------CCCEEEEEEEEEETTTTEE----EEEEEEEEECBCSSBCSCCHH
T ss_pred eEEEEEeecCCCCCCC-----C-----C--------CCCeEEEEEEEEEcCCCEE----eeccceeeEECCCCCCCCCHH
Confidence 5899999999985321 0 0 13599999999985 5542 122267776655543 25555
Q ss_pred HHHHHHHcCCChhhhhhCCCChH----HHHHHHHhcCccccCCccEEEeecchhH-HHHHHHHhC-CCCCCCChHHHHHH
Q psy6037 115 SIDLLQNSGIQFQRHKEEGIEPA----DFAELLTTSGVVLNDKVKWLSFHSGYDF-GYLLKLLMG-TRSLPSEEAEFFEL 188 (286)
Q Consensus 115 SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~SgLv~~~~v~Wvtfhg~yD~-gyL~K~lt~-~~~LP~~~~~F~~~ 188 (286)
+.+. +||.=..+.. |.+.. +|.+.+....++ ..++.|++ +|.+|+ .+|-+-+.. +.++|.
T Consensus 78 ~~~l---tGIt~e~v~~-ap~~~evl~~f~~~l~~~~lv-ahn~~lv~-~g~fD~~~fL~~~~~~~g~~~p~-------- 143 (308)
T 3cg7_A 78 CVDF---TGIPQRSIDT-ADTFDVVYEQFQQWLITLGLE-EGKFAFVC-DSRQDLWRIAQYQMKLSNIQMPA-------- 143 (308)
T ss_dssp HHHH---HCCCHHHHHT-SCBHHHHHHHHHHHHHHHCCC-TTSEEEEE-SSSHHHHTHHHHHHHHTTCCCCG--------
T ss_pred HHHH---cCCCHHHHhc-CCCHHHHHHHHHHHHHhCCcC-CcceEEec-cCcccHHHHHHHHHHHcCCCCch--------
Confidence 5543 8888766654 77765 355556666665 34567776 578999 688665432 114443
Q ss_pred HHhhcCCccchhHHHHhhc-cc-------cccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHh
Q psy6037 189 QRLFFKSIYDVKYLMKSCK-NL-------KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249 (286)
Q Consensus 189 l~~~FP~iYD~K~l~~~~~-~l-------~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~ 249 (286)
+|....||+-+++..- .. .-+|..+++.+|++..|..|-|-.|+..|+.+|.+|.+..
T Consensus 144 ---~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 144 ---FFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp ---GGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---hhcceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 2224568877765431 11 2379999999999988888999999999999999998753
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.46 E-value=2.9e-06 Score=72.53 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=107.4
Q ss_pred hhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCcccc
Q psy6037 33 INTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYA 112 (286)
Q Consensus 33 i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d~~~ 112 (286)
+...+||++|+|.+|+... .-.|||+|+..++ +|+ ..-+|+.+.+... ...
T Consensus 9 l~~~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~-~g~------i~~~f~~lv~P~~-~i~ 59 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ---------------------VDEIIEIGAVKIQ-GGQ------IVDEYHTLIKPSR-EIS 59 (186)
T ss_dssp ----CEEEEEEEESCSCTT---------------------TCCEEEEEEEEEE-TTE------EEEEEEEECBCSS-CCC
T ss_pred CcCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEE-CCE------EEEEEEEEECcCC-CCC
Confidence 4567999999999997421 0149999998886 443 2345666655443 344
Q ss_pred hhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHHhCC-CCCCCChHHHHHHHHh
Q psy6037 113 QDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGT-RSLPSEEAEFFELQRL 191 (286)
Q Consensus 113 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~-~~LP~~~~~F~~~l~~ 191 (286)
+.+.+ -+||.=..+. .+.+..+..+.+.. ++ . +-..|++++.+|+.+|.+.+..- .+.|.
T Consensus 60 ~~~~~---i~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~~----------- 120 (186)
T 2p1j_A 60 RKSSE---ITGITQEMLE-NKRSIEEVLPEFLG--FL-E-DSIIVAHNANFDYRFLRLWIKKVMGLDWE----------- 120 (186)
T ss_dssp HHHHH---HHCCCHHHHT-TCCBHHHHHHHHHH--HS-S-SCEEEETTHHHHHHHHHHHHHHHHCCCCC-----------
T ss_pred HHHhh---hcCCCHHHHh-cCCCHHHHHHHHHH--HH-C-CCEEEEECcHHHHHHHHHHHHHcCCCCCC-----------
Confidence 44433 3888766554 46666554444433 12 1 23678888999999998765421 02221
Q ss_pred hcCCccchhHHHHhhccc-cccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 192 FFKSIYDVKYLMKSCKNL-KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 192 ~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
..++|+..+++...+. ..+|..+++.+|++..+ .|-|-.|+..|+.+|.+|.+.
T Consensus 121 --~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 121 --RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp --CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred --CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHHHH
Confidence 2467887777654322 35799999999998765 699999999999999998654
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.45 E-value=1.9e-06 Score=77.22 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=116.0
Q ss_pred CCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCC--------CC----CCCcceEEEEEE
Q psy6037 36 YNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSC--------TP----PGPFTTWQFNFK 103 (286)
Q Consensus 36 ~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~--------~p----~~~~~~wqFNF~ 103 (286)
-+||++|+|-+|+... .=.|||+|+...+.++. .| .....+-.|+..
T Consensus 12 ~~~vv~D~ETTGl~~~---------------------~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l 70 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSS---------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC 70 (242)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEE
T ss_pred ceEEEEEeecCCCCCC---------------------CCeeEEEEEEEecCCcccccccccccccccccccchhheeEEE
Confidence 3699999999998531 13599999988764320 00 000235577776
Q ss_pred ecCCCcccchhHHHHHHHcCCChhhhhhCCCC-hH-HHHHHHHh--cCccccCCccEEEeec-chhHHHHHHHHhCCCCC
Q psy6037 104 FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIE-PA-DFAELLTT--SGVVLNDKVKWLSFHS-GYDFGYLLKLLMGTRSL 178 (286)
Q Consensus 104 F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~-~~-~F~ell~~--SgLv~~~~v~Wvtfhg-~yD~gyL~K~lt~~~~L 178 (286)
.+... .+.+.+. +-+||.=..+...|+| .. +..+.+.. .++ .+...+|++++ .+|+.||-+.+..- .+
T Consensus 71 i~P~~-~i~~~~~---~i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~~~~r~-g~ 143 (242)
T 3mxm_B 71 IAPGK-ACSPGAS---EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARL-ST 143 (242)
T ss_dssp CCCSS-CCCHHHH---HHHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTS-SS
T ss_pred ECCCC-CCCHHHH---HhcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHHHHHHc-CC
Confidence 65543 3555555 4599999999999864 32 33333332 121 12257889998 99999999988653 33
Q ss_pred CCChHHHHHHHHhhcC-CccchhHHHHhhc---------cc-cccHHHHHhH-cCCccCCCCcccchhhHHHHHHHHHHH
Q psy6037 179 PSEEAEFFELQRLFFK-SIYDVKYLMKSCK---------NL-KGGLQEVAEQ-LDLSRIGPQHQAGSDSLLTGRVFFKMR 246 (286)
Q Consensus 179 P~~~~~F~~~l~~~FP-~iYD~K~l~~~~~---------~l-~ggL~~lA~~-L~v~r~g~~HqAGsDSllT~~~F~~l~ 246 (286)
|.. .-+ .++|+-.+++... .+ .-+|+.+++. +|++..+ +|.|-+|++.|+.+|.++.
T Consensus 144 ~~~----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~ 212 (242)
T 3mxm_B 144 PSP----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKP 212 (242)
T ss_dssp CCT----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSH
T ss_pred CCC----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHH
Confidence 321 001 2457666655321 11 2379999976 9998654 7999999999999999999
Q ss_pred HHhcC
Q psy6037 247 ELFFE 251 (286)
Q Consensus 247 ~~~~~ 251 (286)
+.+..
T Consensus 213 ~~~~~ 217 (242)
T 3mxm_B 213 QALLQ 217 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.37 E-value=2.7e-06 Score=80.55 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=116.2
Q ss_pred CCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecC-CCCCCCCCcceEEEEEEecCCCc-ccch
Q psy6037 36 YNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDS-KSCTPPGPFTTWQFNFKFDLQED-MYAQ 113 (286)
Q Consensus 36 ~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~-~g~~p~~~~~~wqFNF~F~~~~d-~~~~ 113 (286)
-.||+||+|-+|+...+ +...-.|||||+..++. +|+ ..-.|+.+.+.... ...+
T Consensus 128 ~~~vviD~ETTGl~~~~-----------------~~~~deIIEIgaV~vd~~~g~------i~~~f~~lVkP~~~~~I~~ 184 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE------IEDTFQQYVRPEINTQLSD 184 (349)
T ss_dssp SEEEECCCEECCCTTCC-----------------TTCCCCEEECCEEEEETTTTE------EEEEECCBEECSSSCSCCH
T ss_pred CeEEEEEEecCCCCCcC-----------------CCCCCeEEEEEEEEEECCCce------EeEEEEEEECCCCCCCCCH
Confidence 36899999999985321 11223599999999985 343 24456655554432 4555
Q ss_pred hHHHHHHHcCCChhhhhhCCCChHH----HHHHHHhcCccccCCccEEEeecchhHH-HHHHHHhCC-CCCCCChHHHHH
Q psy6037 114 DSIDLLQNSGIQFQRHKEEGIEPAD----FAELLTTSGVVLNDKVKWLSFHSGYDFG-YLLKLLMGT-RSLPSEEAEFFE 187 (286)
Q Consensus 114 ~SI~fL~~~G~DF~k~~~~GI~~~~----F~ell~~SgLv~~~~v~Wvtfhg~yD~g-yL~K~lt~~-~~LP~~~~~F~~ 187 (286)
.+.+. +||.=..+. .+.+..+ |.+.+...++- .+....|++++.+|+. ||-+.+... .++|.
T Consensus 185 ~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~------- 252 (349)
T 1zbu_A 185 FCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP------- 252 (349)
T ss_dssp HHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-------
T ss_pred HHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-------
Confidence 55544 788877665 4655543 44444443221 1224678899999999 987765421 14442
Q ss_pred HHHhhcCCccchhHHHHhhcccc---ccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhc
Q psy6037 188 LQRLFFKSIYDVKYLMKSCKNLK---GGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 188 ~l~~~FP~iYD~K~l~~~~~~l~---ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
++-.+.|++.+.....++. -+|..+++.+|++..|..|-|-.|++.|+.+|.+|.+...
T Consensus 253 ----~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 253 ----FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp ----GGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----ccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1224678877665442222 4799999999999888899999999999999999987653
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.27 E-value=9.3e-06 Score=79.98 Aligned_cols=178 Identities=16% Similarity=0.116 Sum_probs=114.1
Q ss_pred hhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCcc-c
Q psy6037 33 INTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDM-Y 111 (286)
Q Consensus 33 i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d~-~ 111 (286)
+...+||.+|+|-+|+... .-.|||||...++.+|+.- .-.|+.+.+...+. .
T Consensus 6 ~~~~~~vv~DlETTGl~p~---------------------~d~IIEIgaV~vd~~g~ii-----~~~f~~lVkP~~~ilp 59 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA---------------------LDRPAQFAAIRTDSEFNVI-----GEPEVFYCKPADDYLP 59 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT---------------------TSCEEEEEEEEECTTSCBC-----SCCEEEEBCCCTTCCC
T ss_pred CCCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEECCCeEE-----eeeeEEEECCCCCCCC
Confidence 4567899999999998421 0159999999998777631 11367666655544 3
Q ss_pred chhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeec-chhHHHHHHHHhCCCCCCCChHHHHHHHH
Q psy6037 112 AQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHS-GYDFGYLLKLLMGTRSLPSEEAEFFELQR 190 (286)
Q Consensus 112 ~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg-~yD~gyL~K~lt~~~~LP~~~~~F~~~l~ 190 (286)
.++++ .-+||.=..+...|.+..+..+.+.. .+..++..+|+++| .+|+.+|-+.+... -+|.-...+.
T Consensus 60 ~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~-g~~~~~~~w~---- 129 (482)
T 2qxf_A 60 QPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRN-FYDPYAWSWQ---- 129 (482)
T ss_dssp CHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHT-TSCSSGGGTG----
T ss_pred CHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHh-CCCccccccc----
Confidence 56666 45999999988889885554443332 11113457888884 89999998877642 2321110000
Q ss_pred hhcCCccchhHHHHhhc--------------cc-cccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 191 LFFKSIYDVKYLMKSCK--------------NL-KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 191 ~~FP~iYD~K~l~~~~~--------------~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
-....+||--+++.+. +. .-+|+.+++.+|++. +.+|-|-+|++.|+.+|.+|++.
T Consensus 130 -~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~-~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 130 -HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp -GGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHHHH
T ss_pred -cCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 0012446655554432 11 236999999999986 45799999999999999998764
No 18
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.26 E-value=1.5e-05 Score=70.28 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=109.6
Q ss_pred CCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCC------CC----CCCCcceEEEEEEec
Q psy6037 36 YNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKS------CT----PPGPFTTWQFNFKFD 105 (286)
Q Consensus 36 ~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g------~~----p~~~~~~wqFNF~F~ 105 (286)
-+||.+|+|-+|+... .-.|||+|+..++.++ .. ... -..-.|+...+
T Consensus 10 ~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~-~i~~~f~~lv~ 67 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV---------------------EPEIAELSLFAVHRSSLENPEHDESGALVLP-RVLDKLTLCMC 67 (238)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBCC-SSCEEEEEECC
T ss_pred CeEEEEEeeCCCcCCC---------------------CCcEEEEEEEEeccccccccccccccccccc-ccceeeEEEEC
Confidence 4799999999998411 1249999999887531 00 000 12346776655
Q ss_pred CCCcccchhHHHHHHHcCCChhhhhhCCCChH--HHHHHHHh--cCccccCCccEEEeec-chhHHHHHHHHh--CCCCC
Q psy6037 106 LQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPA--DFAELLTT--SGVVLNDKVKWLSFHS-GYDFGYLLKLLM--GTRSL 178 (286)
Q Consensus 106 ~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~--~F~ell~~--SgLv~~~~v~Wvtfhg-~yD~gyL~K~lt--~~~~L 178 (286)
... ...+.+.+ -+||.=..+...|.|.. ...+.+.. .++ .+...+|++++ .+|+.||-+.+. |. ++
T Consensus 68 P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~--~~~~~lVahN~~~FD~~fL~~~~~~~g~-~~ 140 (238)
T 1y97_A 68 PER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQ--AGPICLVAHNGFDYDFPLLCAELRRLGA-RL 140 (238)
T ss_dssp CSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTS--CSSEEEEETTTTTTHHHHHHHHHHHHTC-CC
T ss_pred CCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhC--CCCCEEEecCchhhhHHHHHHHHHHcCC-CC
Confidence 544 34555544 48999888877777642 33333222 111 12357899999 999999987764 32 44
Q ss_pred CCChHHHHHHHHhhcCCccchhHHHHhhc----------cc-cccHHHHHh-HcCCccCCCCcccchhhHHHHHHHHHHH
Q psy6037 179 PSEEAEFFELQRLFFKSIYDVKYLMKSCK----------NL-KGGLQEVAE-QLDLSRIGPQHQAGSDSLLTGRVFFKMR 246 (286)
Q Consensus 179 P~~~~~F~~~l~~~FP~iYD~K~l~~~~~----------~l-~ggL~~lA~-~L~v~r~g~~HqAGsDSllT~~~F~~l~ 246 (286)
|.. ..+.||-.+++... .+ .-+|..+++ .+|++.. ..|-|-.|++.|+.+|.+|.
T Consensus 141 ~~~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~ 207 (238)
T 1y97_A 141 PRD------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRA 207 (238)
T ss_dssp CTT------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTH
T ss_pred CCC------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHH
Confidence 421 03567765665442 21 347999999 4998753 47999999999999999998
Q ss_pred HHhc
Q psy6037 247 ELFF 250 (286)
Q Consensus 247 ~~~~ 250 (286)
+.++
T Consensus 208 ~~~~ 211 (238)
T 1y97_A 208 AELL 211 (238)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.13 E-value=2.3e-05 Score=73.26 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=114.6
Q ss_pred CeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCC------------CCCCCcceEEEEEEe
Q psy6037 37 NYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSC------------TPPGPFTTWQFNFKF 104 (286)
Q Consensus 37 ~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~------------~p~~~~~~wqFNF~F 104 (286)
+||.+|+|-+|+... .=.|||||+..++.++. .+.....+-.|+...
T Consensus 13 tfVv~DlETTGL~~~---------------------~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI 71 (314)
T 3u3y_B 13 TLIFLDLEATGLPSS---------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCI 71 (314)
T ss_dssp EEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEEC
T ss_pred CEEEEEEECCCCCCC---------------------CCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEE
Confidence 599999999998531 12499999998875420 000112356777776
Q ss_pred cCCCcccchhHHHHHHHcCCChhhhhhCCCC-h-HHHHHHHHh--cCccccCCccEEEeec-chhHHHHHHHHhCCCCCC
Q psy6037 105 DLQEDMYAQDSIDLLQNSGIQFQRHKEEGIE-P-ADFAELLTT--SGVVLNDKVKWLSFHS-GYDFGYLLKLLMGTRSLP 179 (286)
Q Consensus 105 ~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~-~-~~F~ell~~--SgLv~~~~v~Wvtfhg-~yD~gyL~K~lt~~~~LP 179 (286)
+... .+.+++.+. +||.=+.+...|+| . .+..+.+.. .+. .+...+|+++| .+|+.||-+.+..- .+|
T Consensus 72 ~P~~-~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~el~r~-Gl~ 144 (314)
T 3u3y_B 72 APGK-ACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARL-STP 144 (314)
T ss_dssp BCSS-CCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTS-SSC
T ss_pred CCCC-CCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHHHHHc-CCC
Confidence 6543 456666554 99999999999985 3 243333322 111 12357888995 89999999988653 333
Q ss_pred CChHHHHHHHHhhcCCccchhHHHHhh-c---------cccccHHHHHhH-cCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037 180 SEEAEFFELQRLFFKSIYDVKYLMKSC-K---------NLKGGLQEVAEQ-LDLSRIGPQHQAGSDSLLTGRVFFKMREL 248 (286)
Q Consensus 180 ~~~~~F~~~l~~~FP~iYD~K~l~~~~-~---------~l~ggL~~lA~~-L~v~r~g~~HqAGsDSllT~~~F~~l~~~ 248 (286)
..... -.+.|+-.+++.. . .-.-+|..+++. +|++.. ..|.|-+|++.|+.+|.++.+.
T Consensus 145 ~~~~~---------~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 145 SPLDG---------TFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp CTTTT---------CEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHH
T ss_pred CCCCC---------ceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 21000 0133554433311 1 112479999999 999864 5899999999999999999988
Q ss_pred hcC
Q psy6037 249 FFE 251 (286)
Q Consensus 249 ~~~ 251 (286)
+..
T Consensus 215 ~l~ 217 (314)
T 3u3y_B 215 LLQ 217 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.13 E-value=2e-05 Score=67.54 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=99.4
Q ss_pred hCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCcccchh
Q psy6037 35 TYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQD 114 (286)
Q Consensus 35 ~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~~ 114 (286)
..+||++|+|.+|+.... .-.|||+|+. +.+|+. + |+.+.+... ...+.
T Consensus 4 ~~~~vviD~ETTGl~~~~--------------------~~~iiei~~v--~~~g~~------i--~~~lV~P~~-~i~~~ 52 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHR--------------------ESGLARCSLV--NVHGAV------L--YDKFIRPEG-EITDY 52 (189)
T ss_dssp --CEEEEEEEEEEETTTT--------------------EEEEEEEEEE--CTTCCE------E--EEEEEECSS-CEEEC
T ss_pred CCeEEEEEeECcCcCCCC--------------------CceEEEEEEE--eCCCCE------E--EeeEecCCC-CCCcc
Confidence 458999999999984210 1247899984 455542 2 555444433 33444
Q ss_pred HHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcC
Q psy6037 115 SIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFK 194 (286)
Q Consensus 115 SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP 194 (286)
+.+. +||.=..+.. +.+..+..+.+.. ++ . +-.+|+++..+|+.+|-+ .+|. .
T Consensus 53 ~~~i---~GIt~~~l~~-a~~~~~v~~~~~~--~l-~-~~~lV~hn~~fD~~~L~~------~~~~-------------~ 105 (189)
T 1wlj_A 53 RTRV---SGVTPQHMVG-ATPFAVARLEILQ--LL-K-GKLVVGHDLKHDFQALKE------DMSG-------------Y 105 (189)
T ss_dssp CHHH---HCCCHHHHTT-CEEHHHHHHHHHH--HH-T-TSEEEESSHHHHHHHTTC------CCTT-------------C
T ss_pred ccCC---CCCCHHHHcC-CCCHHHHHHHHHH--HH-C-CCEEEECCcHHHHHHHHH------hCCC-------------C
Confidence 4443 7777665543 5555443333322 11 1 336788888899988732 3442 1
Q ss_pred CccchhHHHHhhc--c----ccccHHHHHhH-cCCccCCC--CcccchhhHHHHHHHHHHHHHhcCC
Q psy6037 195 SIYDVKYLMKSCK--N----LKGGLQEVAEQ-LDLSRIGP--QHQAGSDSLLTGRVFFKMRELFFED 252 (286)
Q Consensus 195 ~iYD~K~l~~~~~--~----l~ggL~~lA~~-L~v~r~g~--~HqAGsDSllT~~~F~~l~~~~~~~ 252 (286)
.++||..+..... . -..+|..+++. ||++..+. .|-|-.|++.|+.+|.+|++.+...
T Consensus 106 ~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 106 TIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp EEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3678765533211 2 24589999998 89986554 8999999999999999999887543
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.96 E-value=0.00012 Score=61.74 Aligned_cols=169 Identities=18% Similarity=0.142 Sum_probs=98.8
Q ss_pred hCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCc---cc
Q psy6037 35 TYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQED---MY 111 (286)
Q Consensus 35 ~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d---~~ 111 (286)
.-+||++|+|-+|+... .=.|||+|...++.+|+. ..-.|+...+.... ..
T Consensus 4 ~~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~~-----~~~~~~~lv~P~~~i~~~i 57 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE---------------------RDRIIEIATLVTDANLNI-----LAEGPTIAVHQSDEQLALM 57 (180)
T ss_dssp GGCEEEEEEEESSSCTT---------------------TCCEEEEEEEEECTTCCE-----EEEEEEEECCCCHHHHTTC
T ss_pred CCcEEEEEeeCCCCCCC---------------------CCceEEEEEEEEcCCCcE-----ecCCcceEECCCHHHhhcC
Confidence 35899999999998421 014999999988766542 22237766554322 23
Q ss_pred chhHHHHHHHcCCChhhhhhCCCChHHHHHHHHh--cCccccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHH
Q psy6037 112 AQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTT--SGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQ 189 (286)
Q Consensus 112 ~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~--SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l 189 (286)
++.+.+.-.-+||.=.. ...|.+..+..+.+.. .+.....+..+|.++..+|+.+|-+.+-. +
T Consensus 58 ~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~----------~---- 122 (180)
T 2igi_A 58 DDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPE----------L---- 122 (180)
T ss_dssp CHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHH----------H----
T ss_pred CHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHH----------h----
Confidence 33444433447876555 3457776543333322 12111113467776669999999775421 1
Q ss_pred HhhcC-CccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhc
Q psy6037 190 RLFFK-SIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 190 ~~~FP-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
...++ ...|+..|.+.+..+..++. .|++ ....|-|-.|++.|+.+|.++++.+|
T Consensus 123 ~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~-~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 123 EAYFHYRYLDVSTLKELARRWKPEIL-----DGFT-KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp HHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC-CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ccCCCcceeeHHHHHHHHHHhChHhh-----hCCC-CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 12232 45675444222222222221 1453 35689999999999999999999876
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.48 E-value=0.00044 Score=59.37 Aligned_cols=171 Identities=13% Similarity=0.069 Sum_probs=97.2
Q ss_pred hhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCCcc---
Q psy6037 34 NTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDM--- 110 (286)
Q Consensus 34 ~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~d~--- 110 (286)
...+||++|+|-+|+... .=.|||+|....+ |+.. ...-.|+...+.....
T Consensus 7 ~~~~~vviD~ETTGl~p~---------------------~d~IieIgav~~~--~~~~---~~~~~~~~~v~p~~~i~~~ 60 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD---------------------RDSIIEIATIVTD--AQLN---VLAEGPELAIAHSLETLEA 60 (194)
T ss_dssp -CCEEEEEEEEESCSCTT---------------------TCCEEEEEEEEEE--TTCC---EEEECCCEECCCCHHHHHT
T ss_pred CCCCEEEEEeECCCCCCC---------------------CCccEEEEEEEEc--CCcc---eeccCceEEEeCCHHHhhc
Confidence 456899999999998421 0149999987744 4320 1122355443332211
Q ss_pred cchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHh--cCccccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHH
Q psy6037 111 YAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTT--SGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188 (286)
Q Consensus 111 ~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~--SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~ 188 (286)
..+...+.-.-+||.=.. .+.+.+..+..+.+.. .+-+......+|.++..+|+.||-+.+-. +
T Consensus 61 ~~~~~~~~~~itGIt~~~-l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~----------~--- 126 (194)
T 2gbz_A 61 MDEWNRNQHRRSGLWQRV-LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR----------L--- 126 (194)
T ss_dssp SCSHHHHHHHHHTHHHHH-HHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHH----------H---
T ss_pred cchHHHHHHHhhCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHH----------h---
Confidence 122222333447876544 5567777654444332 22222223358888889999999875431 1
Q ss_pred HHhhcC-CccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhcC
Q psy6037 189 QRLFFK-SIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFE 251 (286)
Q Consensus 189 l~~~FP-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~~ 251 (286)
..+++ ...|+..|.+.+..+...| ++ ++ .....|-|-+|++.|+.+|..+++.++.
T Consensus 127 -~~~~~~~~~d~~~l~~l~~~~~p~~---~~--~i-~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 127 -ERYFHYRNLDVSTIKELARRWAPAV---AS--GF-AKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp -HHHSCSCEEEHHHHHHHHHHHCGGG---GT--TC-CCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred -cccCCCccccHHHHHHHHHHhCHHH---Hh--CC-CCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 12332 4557765543332222221 11 23 2345899999999999999999988763
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.11 E-value=0.0075 Score=51.92 Aligned_cols=169 Identities=18% Similarity=0.115 Sum_probs=102.9
Q ss_pred hhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEEEecCCC---cc
Q psy6037 34 NTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQE---DM 110 (286)
Q Consensus 34 ~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF~F~~~~---d~ 110 (286)
.+-+||.+|+|-||+.... =.|||+|.-..+.+++. ..-.+.+...... +.
T Consensus 7 ~~~~~v~~D~ETTGL~p~~---------------------d~IiEIgaV~~d~~~~i-----~~~~~~~~i~~p~~~l~~ 60 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER---------------------DRIIEIATIVTNSHLDI-----LAEGPAFAIHQPDKLLTA 60 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT---------------------CCEEEEEEEEECTTCCE-----EEECCCEECCCCHHHHTT
T ss_pred CCCcEEEEEEECCCCCCCC---------------------CceEEEEEEEEcCCeEE-----eeeeEEEEEeCCcccccc
Confidence 3568999999999985321 14999999866554431 1111222221111 11
Q ss_pred cchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHh--cCccccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHH
Q psy6037 111 YAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTT--SGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188 (286)
Q Consensus 111 ~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~--SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~ 188 (286)
..+.+.+--.-+||. ++..+.|.+..+..+.+.. .+-+...+-..|.++-.+|.+||-+-+- .
T Consensus 61 ~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~--------------~ 125 (186)
T 3tr8_A 61 MDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP--------------R 125 (186)
T ss_dssp SCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCH--------------H
T ss_pred CCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHH--------------H
Confidence 234455555567887 7777888888766555443 1112123445667677899999976531 1
Q ss_pred HHhhcC-Cccch---hHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhcCC
Q psy6037 189 QRLFFK-SIYDV---KYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFED 252 (286)
Q Consensus 189 l~~~FP-~iYD~---K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~~~ 252 (286)
+...|+ .+.|+ |.|++. +..++.. ++ .....|.|=+|++-|...+.-.++.+|..
T Consensus 126 ~~~~~~~~~iDvsTl~elar~---~~P~~~~-----~~-~~~~~HrAl~Da~ati~~l~~y~~~~~~~ 184 (186)
T 3tr8_A 126 LNQFFHYRHLDVTTLKILAQR---WAPQIAA-----AH-IKESQHLALQDIRDSIEELRYYRAHLLNL 184 (186)
T ss_dssp HHHHSCSCEEEHHHHHHHHHH---HCHHHHT-----TS-CCCCCSCHHHHHHHHHHHHHHHHHHTBCC
T ss_pred cCCCCCCcEEeHHHHHHHHHH---HCccccc-----cC-CCCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence 233454 57783 335543 3333331 33 34569999999999999999999988753
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=95.98 E-value=0.12 Score=51.73 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCCCCcceEEEEE
Q psy6037 23 QEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNF 102 (286)
Q Consensus 23 ~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~~~~~~wqFNF 102 (286)
.+++..+.+.++..++|++|||.+|+... . -.++++|++. .+|+ .|
T Consensus 13 ~~~l~~~~~~l~~~~~va~DtEttgl~~~-----~----------------~~iv~I~~~~--~~g~-------~~---- 58 (605)
T 2kfn_A 13 EETLKAWIAKLEKAPVFAFDTETDSLDNI-----S----------------ANLVGLSFAI--EPGV-------AA---- 58 (605)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEESCSCTT-----T----------------CCEEEEEEEE--ETTE-------EE----
T ss_pred HHHHHHHHHhcccCCeEEEEEecCCCCcc-----c----------------CceEEEEEEE--cCCc-------EE----
Confidence 46776666667778999999999997421 0 0267777774 2332 22
Q ss_pred EecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHHhCCCCCCCCh
Q psy6037 103 KFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEE 182 (286)
Q Consensus 103 ~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~ 182 (286)
++++.... + |. ...++.....+.|.. ++.++++.||.++..+|+.+|.+ .|- ++|
T Consensus 59 yip~~~~~-----~------~~------~~~l~~~~vl~~L~~--~L~d~~i~kV~hnak~D~~~L~~--~Gi-~l~--- 113 (605)
T 2kfn_A 59 YIPVAHDY-----L------DA------PDQISRERALELLKP--LLEDEKALKVGQNLKYDRGILAN--YGI-ELR--- 113 (605)
T ss_dssp EEECCCCS-----T------TC------CCCCCHHHHHHHHHH--HHTCTTSCEEESSHHHHHHHHHT--TTC-CCC---
T ss_pred EEeccccc-----c------cc------ccccCHHHHHHHHHH--HHcCCCCeEEEECcHHHHHHHHH--CCC-CCC---
Confidence 22222110 0 10 112333221122221 23356789999999999999976 242 322
Q ss_pred HHHHHHHHhhcCCccchhHHHHhhcc-c-cccHHHHHhHc-CCccC------CC---------------CcccchhhHHH
Q psy6037 183 AEFFELQRLFFKSIYDVKYLMKSCKN-L-KGGLQEVAEQL-DLSRI------GP---------------QHQAGSDSLLT 238 (286)
Q Consensus 183 ~~F~~~l~~~FP~iYD~K~l~~~~~~-l-~ggL~~lA~~L-~v~r~------g~---------------~HqAGsDSllT 238 (286)
+.++||..++..... . .-+|..|++.+ +++.+ |+ .|-|..|+.+|
T Consensus 114 -----------~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~ 182 (605)
T 2kfn_A 114 -----------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVT 182 (605)
T ss_dssp -----------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred -----------CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 236898887776642 2 45899999876 76532 21 14588999999
Q ss_pred HHHHHHHHHHhc
Q psy6037 239 GRVFFKMRELFF 250 (286)
Q Consensus 239 ~~~F~~l~~~~~ 250 (286)
...|.+|.+.+-
T Consensus 183 ~~L~~~L~~~L~ 194 (605)
T 2kfn_A 183 LQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 25
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=56.40 E-value=27 Score=32.99 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=58.4
Q ss_pred ccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHc-CCccCCC-
Q psy6037 150 LNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQL-DLSRIGP- 227 (286)
Q Consensus 150 ~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L-~v~r~g~- 227 (286)
.++++.+|.+...+|+..|.+-+ |- . ..+++||...+..+..-+-||..|++.+ |+.- ++
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~-Gi-~---------------~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l-~K~ 217 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDL-GL-Y---------------VVGLFDTYHASKAIGLPRHSLAYLLENFANFKT-SKK 217 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CC-C---------------CSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCC-CCT
T ss_pred cCCCceEEEEehHHHHHHHHHHc-CC-C---------------cCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCC-Ccc
Confidence 35678899988899998887643 31 1 1247899877776643357899998774 5431 11
Q ss_pred ---------------CcccchhhHHHHHHHHHHHHHhcC
Q psy6037 228 ---------------QHQAGSDSLLTGRVFFKMRELFFE 251 (286)
Q Consensus 228 ---------------~HqAGsDSllT~~~F~~l~~~~~~ 251 (286)
.+-|..|+..+...+-+|++.+-.
T Consensus 218 ~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 218 YQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123778999999999999887644
No 26
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=40.19 E-value=35 Score=24.70 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHhHcCCccCCC---CcccchhhHHHHHHHHHHHHHhc
Q psy6037 214 QEVAEQLDLSRIGP---QHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 214 ~~lA~~L~v~r~g~---~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
+-+++.||++.++. -...|-||+++.+.-.+|++.+.
T Consensus 23 ~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 62 (93)
T 4i4d_A 23 AIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVD 62 (93)
T ss_dssp HHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhC
Confidence 34567788877764 45799999999999999988763
No 27
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=37.33 E-value=34 Score=24.87 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHhHcCCccCCC---CcccchhhHHHHHHHHHHHHHh
Q psy6037 215 EVAEQLDLSRIGP---QHQAGSDSLLTGRVFFKMRELF 249 (286)
Q Consensus 215 ~lA~~L~v~r~g~---~HqAGsDSllT~~~F~~l~~~~ 249 (286)
-+++.|+++.++. --..|-||+.+.+.-.+|++.+
T Consensus 22 i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 22 IWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp HHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHH
Confidence 4567788877764 3479999999999999998875
No 28
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=36.20 E-value=86 Score=28.79 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=56.1
Q ss_pred cCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccc-cccHHHHHhHc-CCccC---
Q psy6037 151 NDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNL-KGGLQEVAEQL-DLSRI--- 225 (286)
Q Consensus 151 ~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L-~v~r~--- 225 (286)
++++.+|.++.-+|+..|.+.+ |- . ...++||...+..++.- .-||..|++.. |+.-.
T Consensus 72 d~~i~Kv~h~~k~Dl~~L~~~~-Gi-~---------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 72 DPSITKFLHAGSEDLEVFLNVF-GE-L---------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-SS-C---------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTT
T ss_pred CCCceEEEeeHHHHHHHHHHHc-CC-C---------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCc
Confidence 5678899888889998886532 31 1 12568998777766432 45899998864 64311
Q ss_pred --------C-C---CcccchhhHHHHHHHHHHHHHhc
Q psy6037 226 --------G-P---QHQAGSDSLLTGRVFFKMRELFF 250 (286)
Q Consensus 226 --------g-~---~HqAGsDSllT~~~F~~l~~~~~ 250 (286)
. . .+-|..|+..+...+-+|++.+-
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12377899999999999987654
No 29
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=35.46 E-value=73 Score=30.35 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=56.9
Q ss_pred ccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhH-cCCccCCC-
Q psy6037 150 LNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQ-LDLSRIGP- 227 (286)
Q Consensus 150 ~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~-L~v~r~g~- 227 (286)
.++++.+|.++..+|+.-|.+-+ |- . ...++||..++..+..-..||..|++. ||++- ++
T Consensus 179 ~dp~i~KV~H~~k~Dl~~L~~~~-Gi-~---------------~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l-~K~ 240 (428)
T 3saf_A 179 TDPAIVKVFHGADSDIEWLQKDF-GL-Y---------------VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDS-NKQ 240 (428)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CC-C---------------CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCC-CCT
T ss_pred cCCCceEEEeehHHHHHHHHHHc-CC-C---------------cCceeechhHHHHhCCCCCCHHHHHHHHcCCCC-Ccc
Confidence 35778888888889987665433 31 1 135789988877765324689998865 56531 11
Q ss_pred ---------------CcccchhhHHHHHHHHHHHHHhcC
Q psy6037 228 ---------------QHQAGSDSLLTGRVFFKMRELFFE 251 (286)
Q Consensus 228 ---------------~HqAGsDSllT~~~F~~l~~~~~~ 251 (286)
.+-|..|+..+...+-+|+..+-.
T Consensus 241 ~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 133788999999999999877643
No 30
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=34.57 E-value=29 Score=25.16 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=29.5
Q ss_pred hhHHHHHHHcCCChh-----------------hhhhCCCChHHHHHHHHhcCc
Q psy6037 113 QDSIDLLQNSGIQFQ-----------------RHKEEGIEPADFAELLTTSGV 148 (286)
Q Consensus 113 ~~SI~fL~~~G~DF~-----------------k~~~~GI~~~~F~ell~~SgL 148 (286)
|+.++.|.+.|||+= ....+||+...+-+.|...|.
T Consensus 23 P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 23 PEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp GGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 789999999999875 235688999999988888775
No 31
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=27.45 E-value=90 Score=26.52 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred ccCCccEEEeecchhHHHHHHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHh-hc---cccccHHHHHhH-cCCcc
Q psy6037 150 LNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKS-CK---NLKGGLQEVAEQ-LDLSR 224 (286)
Q Consensus 150 ~~~~v~Wvtfhg~yD~gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~-~~---~l~ggL~~lA~~-L~v~r 224 (286)
.+++|+.|.+....|+..|.+-+ |- .| ..++|+..++.. +. ...-||..+++. ||++=
T Consensus 105 ~d~~i~Kvg~~~~~D~~~L~~~~-g~--~~--------------~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l 167 (206)
T 1vk0_A 105 ASKFVTFVGVQIEEDLDLLRENH-GL--VI--------------RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL 167 (206)
T ss_dssp TCSSSEEEESSCHHHHHHHHHHH-CC--CC--------------SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC
T ss_pred cCCCceEEEeccHHHHHHHHHhc-CC--Cc--------------CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC
Confidence 46788888888899999886654 31 11 268899766643 33 234689998876 56532
Q ss_pred -C----------C----CCcccchhhHHHHHHHHHHHH
Q psy6037 225 -I----------G----PQHQAGSDSLLTGRVFFKMRE 247 (286)
Q Consensus 225 -~----------g----~~HqAGsDSllT~~~F~~l~~ 247 (286)
. . ..+-|-.|++....+|-+|++
T Consensus 168 K~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 168 GQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0 123388999999999998864
No 32
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=24.75 E-value=83 Score=22.88 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHhhcCCc
Q psy6037 166 GYLLKLLMGTRSLPSEEAEFFELQRLFFKSI 196 (286)
Q Consensus 166 gyL~K~lt~~~~LP~~~~~F~~~l~~~FP~i 196 (286)
.|+.-|-..+ --|-+.+.|-++++..||.+
T Consensus 25 ~Y~~~C~~~~-~~pl~~a~FGK~ir~~FP~l 54 (76)
T 1dp7_P 25 HYLLHSQEQK-LEPVNAASFGKLIRSVFMGL 54 (76)
T ss_dssp HHHHHHHHTT-CCCCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcC-CccCCHHHHHHHHHHHCCCc
Confidence 4566666665 77999999999999999986
No 33
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=22.32 E-value=55 Score=25.60 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=27.1
Q ss_pred ccchhHHHHHHHcCCChhhhhhCCCChHHHH
Q psy6037 110 MYAQDSIDLLQNSGIQFQRHKEEGIEPADFA 140 (286)
Q Consensus 110 ~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ 140 (286)
..++.+++.|+++|+|...++.+-|....+.
T Consensus 43 ~~~p~a~~~l~~~Gid~s~~~ar~l~~~~~~ 73 (131)
T 1jf8_A 43 GVNPKAIEAMKEVDIDISNHTSDLIDNDILK 73 (131)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCCCBCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCcccCccccCChHHhc
Confidence 3578999999999999999999999987664
Done!