Your job contains 1 sequence.
>psy6037
MSNSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTS
EYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQ
NSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPS
EEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGR
VFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6037
(286 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 965 4.1e-97 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 965 4.1e-97 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 964 5.2e-97 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 964 5.2e-97 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 964 5.2e-97 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 962 8.4e-97 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 960 1.4e-96 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 943 8.7e-95 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 943 8.7e-95 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 943 8.7e-95 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 943 8.7e-95 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 943 8.7e-95 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 942 1.1e-94 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 940 1.8e-94 1
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 897 6.5e-90 1
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 857 1.1e-85 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 836 1.9e-83 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 791 1.1e-78 1
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 729 4.1e-72 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 534 6.8e-69 2
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 697 1.0e-68 1
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 697 1.0e-68 1
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 686 1.5e-67 1
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 666 2.0e-65 1
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 319 6.1e-64 3
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 650 9.7e-64 1
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 639 1.4e-62 1
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 622 9.0e-61 1
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 620 1.5e-60 1
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 575 8.6e-56 1
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 557 7.0e-54 1
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 469 1.5e-44 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 433 9.6e-41 1
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 433 9.6e-41 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 433 9.6e-41 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 416 6.1e-39 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 394 1.3e-36 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 393 1.7e-36 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 393 1.7e-36 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 362 3.2e-33 1
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 360 5.2e-33 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 359 6.7e-33 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 355 1.8e-32 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 348 9.8e-32 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 294 7.7e-31 2
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 336 1.8e-30 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 311 8.2e-28 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 294 5.2e-26 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 294 5.2e-26 1
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 243 1.3e-20 1
UNIPROTKB|H0YBT3 - symbol:CNOT7 "CCR4-NOT transcription c... 185 1.9e-14 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 144 1.1e-09 1
POMBASE|SPBC29A10.09c - symbol:SPBC29A10.09c "CAF1 family... 100 4.1e-06 3
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 186/279 (66%), Positives = 221/279 (79%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
+FFED IDD KYCGH+YGLG + + + GNA E +
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 186/279 (66%), Positives = 221/279 (79%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
+FFED IDD KYCGH+YGLG + + + GNA E +
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 185/273 (67%), Positives = 219/273 (80%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
+FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 185/273 (67%), Positives = 219/273 (80%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
+FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 185/273 (67%), Positives = 219/273 (80%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
+FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 184/273 (67%), Positives = 220/273 (80%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N++EE IR + +NYI +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL +SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTSSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L ++ LP EE +FFE
Sbjct: 125 KHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSK-LPDEEVDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE
Sbjct: 184 ILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
+FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 186/275 (67%), Positives = 218/275 (79%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA NV+EE IR +I YNYI +DTEFPGVV +P+G+FRST +YQY L+ NVDL
Sbjct: 12 ICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKI+Q+GLTF + PPG TTWQFNFKF+L EDMY+QDSIDLLQNSG+QF++H+EEG
Sbjct: 72 LKIVQLGLTFMNEDGDYPPGT-TTWQFNFKFNLTEDMYSQDSIDLLQNSGLQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSG+VL + VKWLSFHSGYDFGYL+KLL +R LP EE EFF++ LFF
Sbjct: 131 IDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSR-LPEEEHEFFQILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
+IYDVKYLMKSCKNLKGGLQEVA+QL+L RIG QHQAGSDSLLTG FF+M+ELFFED
Sbjct: 190 PAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFRMKELFFEDN 249
Query: 254 IDDDKYCGHIYGLGPAGWNGHTNG--NAENIEVTN 286
IDD KYCG +YGLG +G NG N+ E N
Sbjct: 250 IDDAKYCGRLYGLG-SGSTQSQNGISNSSQEETNN 283
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 179/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 179/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 179/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 179/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 179/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 178/254 (70%), Positives = 209/254 (82%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 11 ICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 70
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL +SG+QFQ+H+EEG
Sbjct: 71 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLASSGLQFQKHEEEG 129
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL+D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 130 IDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 188
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED
Sbjct: 189 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDT 248
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 249 IDDAKYCGRLYGLG 262
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 179/254 (70%), Positives = 208/254 (81%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR + +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ FAELL TSGVVL D VKWLSFHSGYDFGY++KLL +R LP EE EFF + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QHQAGSDSLLTG FF+M+ELFFED+
Sbjct: 190 PSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDS 249
Query: 254 IDDDKYCGHIYGLG 267
IDD KYCG +YGLG
Sbjct: 250 IDDAKYCGRLYGLG 263
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 161/240 (67%), Positives = 206/240 (85%)
Query: 9 NEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLK 68
NE+ GIR+VW +N++EEF IR ++ Y+Y+ +DTEFPGVVA+P+G+FRST++Y Y L+
Sbjct: 16 NEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLR 75
Query: 69 INVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQR 128
NVDLL+IIQ+GLTF D TPPG ++TWQFNFKF+L EDMYAQDSIDLLQNSGIQF++
Sbjct: 76 CNVDLLRIIQLGLTFMDDDGKTPPG-YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKK 134
Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
H+E+GI+P DFAELL +SG+VL + +KWL FHSGYDFGYLLKLL ++LP +E+EFF+L
Sbjct: 135 HEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD-QNLPPDESEFFDL 193
Query: 189 QRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
++F +I+D+KYLMKSCKNLKGGLQEVA+QL+L R+GPQHQAGSD+LLTG FFKMRE+
Sbjct: 194 LHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREV 253
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 166/279 (59%), Positives = 208/279 (74%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I++VW N+ EE IR+L++ YNYI +DTEFPG+V +P+G+FRSTS+Y Y L++NVD
Sbjct: 9 IKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDYHYQTLRLNVDQ 68
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF DS+ P TWQFNFKF L EDMYAQDSIDLL SGI+F++++ G
Sbjct: 69 LKIIQLGLTFSDSEGNLAK-PTCTWQFNFKFSLSEDMYAQDSIDLLSRSGIEFKKNEANG 127
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ DF E L +SG+VLND +KW+SFHSGYDFGYLLK L T LP +EA+FF R +F
Sbjct: 128 IDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCT-VLPLDEADFFGSARTYF 186
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYD+KY+MKSCKNLKGGL E+A+ LD+ RIGPQHQAGSDSLLT FFKMR++FFE+
Sbjct: 187 PCIYDIKYIMKSCKNLKGGLSELADDLDIKRIGPQHQAGSDSLLTSTTFFKMRKMFFENQ 246
Query: 254 IDDDKYCGHIYGL---GPAGW--NGHTN-GNAENIEVTN 286
+DD KY +YGL GP G N HT GN +++N
Sbjct: 247 LDDSKYLNILYGLSSFGPDGTPTNIHTGAGNNPPPQLSN 285
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 160/235 (68%), Positives = 190/235 (80%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVF 242
+ RLFF IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG +
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNAY 238
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 152/265 (57%), Positives = 191/265 (72%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVWA N++ E IR L++ Y + IDTEFPG V KP+ R +Y Y L+ NVDL
Sbjct: 47 IREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMYPDYNYQTLRSNVDL 106
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ G+TF DS C P P TWQFNFKF L++DMY+ +I+LL++ GI FQR ++ G
Sbjct: 107 LKIIQFGITFSDSTGCLPV-PTCTWQFNFKFSLKDDMYSPYAIELLKSCGIDFQRIEDYG 165
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
I+ DF+EL +SG+VLNDK++W+ FH GYDFGYLLK+L LP E++FF+L R++F
Sbjct: 166 IDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLLKVL-SCSELPKSESDFFDLLRIYF 224
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGL +AE L++ R+GPQHQAGSDSLLT FFK+RE FFE+
Sbjct: 225 PCIYDVKYLMKSCKNLKGGLSGLAEDLNVVRVGPQHQAGSDSLLTNSTFFKLREEFFENE 284
Query: 254 IDDDKYCGHIYGLGPAGWNGHTNGN 278
IDD KY G +YG N H NG+
Sbjct: 285 IDDHKYKGILYGYN-VSQNFHHNGH 308
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 145/283 (51%), Positives = 195/283 (68%)
Query: 5 VNAINEKYG-IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQ 63
V+ I+ + IR+VW+ N+Q+E I SLI Y + +DTEFPGVVA+PLG F+S+ +Y
Sbjct: 15 VDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYH 74
Query: 64 YHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSG 123
Y L+ NVD LKIIQIGL D + P TWQFNF F+LQ+DMYA +SI+LL SG
Sbjct: 75 YQTLRANVDSLKIIQIGLALSDEEG-NAPVEACTWQFNFTFNLQDDMYAPESIELLTKSG 133
Query: 124 IQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEA 183
I F++H+E GIEPADFAELL SG+VL ++V W++FHSGYDF YLLK M LP+E
Sbjct: 134 IDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKA-MTQIPLPAEYE 192
Query: 184 EFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFF 243
EF+++ ++F YD+KY+MKS N GLQ++A+ L + RIGPQHQAGSD+LLT R+FF
Sbjct: 193 EFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFF 252
Query: 244 KMRELFFEDAIDDDKYCGHIYGLGPAG---WNGHTNGNAENIE 283
++R +F+ +ID + +YGLG G W H N + I+
Sbjct: 253 EIRSRYFDGSIDS-RMLNQLYGLGSTGSVLW--HNNSSTPQIQ 292
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 534 (193.0 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 102/210 (48%), Positives = 140/210 (66%)
Query: 11 KYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKIN 70
K IR+VW N+ +E +R L+ Y YI +DTEFPG+VA+P+G F + ++Y Y L+ N
Sbjct: 135 KTRIRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARPIGSFTNKADYHYQTLRCN 194
Query: 71 VDLLKIIQIGLTFFDSKSCTPPGPFT----------------TWQFNFKFDLQEDMYAQD 114
VDLLK+IQ+G+T F K PP T TWQFNF+F L+EDMYAQ+
Sbjct: 195 VDLLKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFRFSLEEDMYAQE 254
Query: 115 SIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMG 174
S +L +GI F H++ GI+P +F LL +SG+VL D V W+SFHSGYDFGYL+K+++
Sbjct: 255 STAMLAKAGIDFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGYLMKIML- 313
Query: 175 TRSLPSEEAEFFELQRLFFKSIYDVKYLMK 204
++LP E EF +L +FF S+YD+KYLMK
Sbjct: 314 CQALPENEEEFHKLLNIFFPSLYDIKYLMK 343
Score = 183 (69.5 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 210 KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGL 266
K GLQ++A++L + R+G HQAGSDSL+TG +F+KMR+L F IDD KY G I+GL
Sbjct: 370 KSGLQDIADELGVKRVGIAHQAGSDSLVTGEIFWKMRQLVFNGKIDDSKYSGQIWGL 426
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 138/228 (60%), Positives = 170/228 (74%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDS 235
+ RLFF IYDVKYLMKSCKNLK ++ + D G + GS S
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKMFFEDHID--DAKYCGHLYGLGSGS 229
Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 52/161 (32%), Positives = 73/161 (45%)
Query: 126 FQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEF 185
F+ + E + D ELLTTSG+ + G + Y +LLM + + E ++
Sbjct: 99 FKFNLTEDMYAQDSIELLTTSGIQFKKHEE-----EGIETQYFAELLMTSGVVLCEGVKW 153
Query: 186 FELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
L F S YD YL+K N L E E+LD I + K
Sbjct: 154 -----LSFHSGYDFGYLIKILTN--SNLPE--EELDFFEILRLFFPVIYDVKYLMKSCKN 204
Query: 246 RELFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
++FFED IDD KYCGH+YGLG + + + GNA E +
Sbjct: 205 LKMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 245
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 138/228 (60%), Positives = 170/228 (74%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
+H+EEGIE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183
Query: 188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDS 235
+ RLFF IYDVKYLMKSCKNLK ++ + D G + GS S
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKMFFEDHID--DAKYCGHLYGLGSGS 229
Score = 131 (51.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 51/155 (32%), Positives = 71/155 (45%)
Query: 126 FQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEF 185
F+ + E + D ELLTTSG+ + G + Y +LLM + + E ++
Sbjct: 99 FKFNLTEDMYAQDSIELLTTSGIQFKKHEE-----EGIETQYFAELLMTSGVVLCEGVKW 153
Query: 186 FELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
L F S YD YL+K N L E E+LD I + K
Sbjct: 154 -----LSFHSGYDFGYLIKILTN--SNLPE--EELDFFEILRLFFPVIYDVKYLMKSCKN 204
Query: 246 RELFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
++FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 205 LKMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 239
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 131/259 (50%), Positives = 185/259 (71%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVW N++ E IR +++ + ++ +DTEFPG+V +P+G F++ +EY Y LK NV++
Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71
Query: 74 LKIIQIGLTFFDSK----SCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQR 128
LK+IQ+GLTF D K +C + WQFNF+ FDL+ D+YA DSI+LL+ SGI F +
Sbjct: 72 LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVK 131
Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
+ E GI+ FAELL +SG+VLN+ V W++FHSGYDFGYLLKLL ++LP + FFE+
Sbjct: 132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT-CQNLPETQTGFFEM 190
Query: 189 QRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
++F +YD+K+LMK C +L GGL ++AE LD+ R+G HQAGSDSLLT F K++E
Sbjct: 191 ISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQEN 250
Query: 249 FFEDAIDDDKYCGHIYGLG 267
FF +++ KY G +YGLG
Sbjct: 251 FFIGSME--KYSGVLYGLG 267
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 127/187 (67%), Positives = 152/187 (81%)
Query: 24 EEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTF 83
EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDLLKIIQ+GLTF
Sbjct: 2 EEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTF 61
Query: 84 FDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELL 143
+ + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEGIE FAELL
Sbjct: 62 MNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELL 120
Query: 144 TTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLM 203
TSGVVL + VKWLSFHSGYDFGYL+K+L + +LP EE +FFE+ RLFF IYDVKYLM
Sbjct: 121 MTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFFPVIYDVKYLM 179
Query: 204 KSCKNLK 210
KSCKNLK
Sbjct: 180 KSCKNLK 186
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 319 (117.4 bits), Expect = 6.1e-64, Sum P(3) = 6.1e-64
Identities = 59/113 (52%), Positives = 81/113 (71%)
Query: 92 PGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLN 151
P P+T WQFNF+F L++DMY+Q I+ L +GI F + +GI P +FA L+ +SG+V +
Sbjct: 228 PLPYT-WQFNFQFSLKDDMYSQSQIESLLQAGIDFVALERDGINPKEFASLMISSGMVCD 286
Query: 152 DKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMK 204
+ + W+SFHS YDFGYLLKLL LP ++ EF +L RLFF ++YDVKY MK
Sbjct: 287 ESISWISFHSAYDFGYLLKLLW-CNMLPEDQDEFKQLLRLFFPNVYDVKYFMK 338
Score = 232 (86.7 bits), Expect = 6.1e-64, Sum P(3) = 6.1e-64
Identities = 45/91 (49%), Positives = 59/91 (64%)
Query: 9 NEKYG-IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
N+ G IREVW N+ EE +R LI Y+YI +DT FPGVV +P+G FRS +Y Y L
Sbjct: 120 NQTKGRIREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRDYHYQCL 179
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPG-PFTT 97
+ NVD+L +IQIG+T F+ PP P +T
Sbjct: 180 RANVDMLNVIQIGITLFNEDGENPPARPNST 210
Score = 143 (55.4 bits), Expect = 6.1e-64, Sum P(3) = 6.1e-64
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 210 KGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGL 266
K L+ +AE L + R GP HQAGSDSLLTGR FF+MRE F + +D G ++GL
Sbjct: 366 KSTLETLAEVLKVKRTGPAHQAGSDSLLTGRAFFQMREKVFGGKLPED-ILGQVWGL 421
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/258 (48%), Positives = 179/258 (69%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
IREVW N+ EEF IR +++ ++YI +DTEFPGVV KP+ F+ ++ Y LK NVDL
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPP---GPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRH 129
LK+IQ+GLTF D P F WQFNF+ F++ ED+YA +SI+LL+ GI F+++
Sbjct: 72 LKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131
Query: 130 KEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQ 189
E+GI+ F EL+ +SG+VLND + W++FH GYDFGYL+KLL + LP ++A+FF+L
Sbjct: 132 IEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLT-CKELPLKQADFFKLL 190
Query: 190 RLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249
++F ++YD+K+LM C L GGL +AE + + R+G HQAGSDSLLT F K++E +
Sbjct: 191 YVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERY 250
Query: 250 FEDAIDDDKYCGHIYGLG 267
F + + KY G +YGLG
Sbjct: 251 FPGSTE--KYTGVLYGLG 266
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 122/158 (77%), Positives = 136/158 (86%)
Query: 110 MYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLL 169
MY+QDSIDLL NSG+QFQ+H+EEGI+ FAELL TSGVVL D VKWLSFHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 170 KLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQH 229
KLL +R LP EE EFF + LFF SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG QH
Sbjct: 61 KLLTDSR-LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQH 119
Query: 230 QAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLG 267
QAGSDSLLTG FF+M+ELFFED+IDD KYCG +YGLG
Sbjct: 120 QAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 157
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 124/276 (44%), Positives = 178/276 (64%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I V+ NV+EEF IR + Y Y+ +DTEFPGVVA PLG FRS ++ Y + NV++
Sbjct: 23 IHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVNM 82
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LK+IQ+G + K PP WQFNF F EDM++ +S+++L+ +GI F + G
Sbjct: 83 LKLIQVGFAMVNDKGELPPTG-DVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNG 141
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLK-LLMGTRSLPSEEAEFFELQRLF 192
I A F ELLTTSG++ + ++ WL+F SGYDFGYLLK + +G LP EE+ FF +
Sbjct: 142 IPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLG--DLPKEESTFFMCHKTL 199
Query: 193 FKSIYDVKYLMKS--CKN--LKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
F + +D+K L+++ C + LKGGLQEVA+QLD+ R G +HQAGSD+LLT FFK+++
Sbjct: 200 FPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQ 259
Query: 249 FFEDAIDD--DKYCGHIYGLGPAGWNGHTNGNAENI 282
FF D + CGH++GLG + H++G+ +
Sbjct: 260 FFGDNWNQIAPLICGHMFGLGSSLSLFHSSGSTSRL 295
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 130/274 (47%), Positives = 174/274 (63%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPL------GDFRSTSEYQYHFL 67
IREVW N+++E I I+ + Y+ +DTEFPG+V K + + EY Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPP---GPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSG 123
K NV++LK+IQ+GLT D K P WQFNF+ F++ DM+A DSI+LL+ S
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135
Query: 124 IQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEA 183
I +++ E G++ FAELL SGVVLNDK+ W++FH GYDFGYLLKLL G + LP E +
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSG-KELPEEIS 194
Query: 184 EFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFF 243
+FF+ FF +YD+KYLM C NL GGL+++AE L + R+G HQAGSDSLLT R F
Sbjct: 195 DFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFI 254
Query: 244 KMRELFFEDAIDDDKYCGHIYGL-GPAGWNGHTN 276
KM+E FF ++ KY G ++GL P G N
Sbjct: 255 KMKEFFFTGSLL--KYSGFLFGLDNPRLLTGSKN 286
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 124/265 (46%), Positives = 172/265 (64%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDF--RSTSEYQYHFLKINV 71
IR+VWA N++ EF IR ++ Y +I +DTEFPGV+ K D R Y Y+ LK NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 72 DLLKIIQIGLTFFDSKSCTPP--GPFTT---WQFNFK-FDLQEDMYAQDSIDLLQNSGIQ 125
D L +IQ+GLT D+ P G W+FNF+ FD++ D +A DSI+LL+ GI
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133
Query: 126 FQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEF 185
F+R++ EG+E FAEL+ +SG++ N+ V W++FHS YDFGYL+K+L R LP EF
Sbjct: 134 FERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILT-RRQLPVALREF 192
Query: 186 FELQRLFFKS-IYDVKYLMKSCKN-LKGGLQEVAEQLDLSR-IGPQHQAGSDSLLTGRVF 242
L R FF +YDVK++M+ C+ L GGL VA L+++R +G HQAGSDSLLT + F
Sbjct: 193 LGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAF 252
Query: 243 FKMRELFF-EDAIDDDKYCGHIYGL 266
+MR+L+F ED + K+ G +YGL
Sbjct: 253 QRMRDLYFVEDGAE--KHAGVLYGL 275
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 122/263 (46%), Positives = 170/263 (64%)
Query: 15 REVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTS-EYQYHFLKINVDL 73
REVWA N++ EF I +I+ Y +I +DTEFPGV+ K D R T+ + Y LK NVD
Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFK--SDLRFTNPDDLYTLLKANVDA 77
Query: 74 LKIIQIGLTFFDSKSCTPP-GPFT----TWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQ 127
L +IQ+GLT D P G W+FNF+ FD+ D +A DSI+LL+ GI F+
Sbjct: 78 LSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFE 137
Query: 128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
R+ +G+E FAEL+ +SG+V N++V W++FHS YDFGYL+K+L R LP EF
Sbjct: 138 RNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILT-RRELPGALGEFKR 196
Query: 188 LQRLFF-KSIYDVKYLMKSC-KNLKGGLQEVAEQLDLSR-IGPQHQAGSDSLLTGRVFFK 244
+ R+ F + +YDVK++MK C + L GGL VA L+++R +G HQAGSDSLLT F +
Sbjct: 197 VMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQR 256
Query: 245 MRELFF-EDAIDDDKYCGHIYGL 266
MR+L+F +D +K+ G +YGL
Sbjct: 257 MRDLYFVQDG--PEKHAGVLYGL 277
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 90/143 (62%), Positives = 111/143 (77%)
Query: 8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
++ I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L
Sbjct: 6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65
Query: 68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
+ NVDLLKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF+
Sbjct: 66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124
Query: 128 RHKEEGIEPADFAELLTTSGVVL 150
+H+EEGIE FAELL TSGVVL
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVL 147
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 82/107 (76%), Positives = 92/107 (85%)
Query: 161 SGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQL 220
+GYDFGY++KLL +R LP EE EFF + LFF SIYDVKYLMKSCKNLKGGLQEVA+QL
Sbjct: 104 TGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 221 DLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLG 267
DL RIG QHQAGSDSLLTG FF+M+ELFFED+IDD KYCG +YGLG
Sbjct: 163 DLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/193 (40%), Positives = 111/193 (57%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L + + LL +S + + H+
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTGYDFGY-MVKLLTDSRLPEEEHEFFH 129
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKL----LMGTRSLPSEEAEFFELQ 189
I F + ++ + K D L ++ G+ SL + A FF ++
Sbjct: 130 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMA-FFRMK 188
Query: 190 RLFFK-SIYDVKY 201
LFF+ SI D KY
Sbjct: 189 ELFFEDSIDDAKY 201
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 82/107 (76%), Positives = 92/107 (85%)
Query: 161 SGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQL 220
+GYDFGY++KLL +R LP EE EFF + LFF SIYDVKYLMKSCKNLKGGLQEVA+QL
Sbjct: 104 TGYDFGYMVKLLTDSR-LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQL 162
Query: 221 DLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLG 267
DL RIG QHQAGSDSLLTG FF+M+ELFFED+IDD KYCG +YGLG
Sbjct: 163 DLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 209
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/193 (40%), Positives = 111/193 (57%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L + + LL +S + + H+
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTGYDFGY-MVKLLTDSRLPEEEHEFFH 129
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKL----LMGTRSLPSEEAEFFELQ 189
I F + ++ + K D L ++ G+ SL + A FF ++
Sbjct: 130 ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMA-FFRMK 188
Query: 190 RLFFK-SIYDVKY 201
LFF+ SI D KY
Sbjct: 189 ELFFEDSIDDAKY 201
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 79/208 (37%), Positives = 136/208 (65%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
+R+VW N+ EF IR L++ YN++ I TEF G +A+P+G FRS +Y Y ++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 74 LKIIQIGLTFFDSKSCTPP-GPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEE 132
L IQ+GL+ D+ P GP +TWQFNF+FD ++++ + +S++LL+ SGI F++H+
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGP-STWQFNFEFDPKKEIMSTESLELLRKSGINFEKHENL 278
Query: 133 GIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLF 192
GI+ +F++LL SG++++D V W+++H+ YD G+L+ +LM S+P+ + +F +
Sbjct: 279 GIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMND-SMPNNKEDFEWWVHQY 337
Query: 193 FKSIYDVKYLMKSCKNLKGG-LQEVAEQ 219
+ YD+ + K + K LQ+ ++Q
Sbjct: 338 MPNFYDLNLVYKIIQEFKNPQLQQSSQQ 365
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 77/122 (63%), Positives = 98/122 (80%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NSG+QFQ+H+EEG
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 134 IE 135
I+
Sbjct: 131 ID 132
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 76/100 (76%), Positives = 85/100 (85%)
Query: 168 LLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGP 227
++KLL +R LP EE EFF + LFF SIYDVKYLMKSCKNLKGGLQEVA+QLDL RIG
Sbjct: 1 MVKLLTDSR-LPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGR 59
Query: 228 QHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLG 267
QHQAGSDSLLTG FF+M+ELFFED+IDD KYCG +YGLG
Sbjct: 60 QHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 99
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 85/209 (40%), Positives = 126/209 (60%)
Query: 14 IREVWARNVQEEFVHIRSLINTYN---YIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKIN 70
I+EVW+ N++ EF +R+ IN +I I E PG+VA+P+G F+S+S+Y + L+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 71 VDLLKIIQIGLTFFD-SKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLL-QNSGIQFQR 128
DLL +IQ+ L SK+ T P WQFNF +DL ++MY ++ + +L Q S I FQ
Sbjct: 214 SDLLNLIQLSLCVIKISKNETISTP-VIWQFNFLYDLTKEMYNEEHLAMLAQTSQINFQL 272
Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
GI +FAEL+ SG++L+D + W+SFH+GYD G+ + LL LP +E +F+
Sbjct: 273 LSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSND-DLPVDEPDFYWW 331
Query: 189 QRLFFKSIYDVKY-----LMKSCKNLKGG 212
+F + YD+KY L KS N GG
Sbjct: 332 CAKYFPNFYDLKYIGNQILNKSTTNGAGG 360
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 85/209 (40%), Positives = 126/209 (60%)
Query: 14 IREVWARNVQEEFVHIRSLINTYN---YIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKIN 70
I+EVW+ N++ EF +R+ IN +I I E PG+VA+P+G F+S+S+Y + L+ N
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRAN 213
Query: 71 VDLLKIIQIGLTFFD-SKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLL-QNSGIQFQR 128
DLL +IQ+ L SK+ T P WQFNF +DL ++MY ++ + +L Q S I FQ
Sbjct: 214 SDLLNLIQLSLCVIKISKNETISTP-VIWQFNFLYDLTKEMYNEEHLAMLAQTSQINFQL 272
Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
GI +FAEL+ SG++L+D + W+SFH+GYD G+ + LL LP +E +F+
Sbjct: 273 LSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSND-DLPVDEPDFYWW 331
Query: 189 QRLFFKSIYDVKY-----LMKSCKNLKGG 212
+F + YD+KY L KS N GG
Sbjct: 332 CAKYFPNFYDLKYIGNQILNKSTTNGAGG 360
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 89/238 (37%), Positives = 130/238 (54%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N + E IR + + I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTH 65
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+IQ+G T FD + G TW+ N FD + SI L+++G+ + +EEGI
Sbjct: 66 LIQLGFTLFDRR-----GFAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI 120
Query: 135 EP----ADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQ 189
DF+++LT + K+ W++F YD YL+K L G + LP + EF E +Q
Sbjct: 121 GIDEFFRDFSQILTEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQ 176
Query: 190 RLFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
+L K ++DVK + +SC L GLQ +A+ L + R+G H AGSDS LT RVF K+
Sbjct: 177 QLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 92/253 (36%), Positives = 136/253 (53%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N + E IR + ++ I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTH 60
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQD-SIDLLQNSGIQFQRHKEEGI 134
+IQ+G T FD + T TW+ N + + D SI L+++G+ + EEGI
Sbjct: 61 LIQLGFTLFDRRGITK-----TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGI 115
Query: 135 --EP--ADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQ 189
E DF+++L + K+ W++F YD YL+K L G + LP + EF E ++
Sbjct: 116 GIEEFFRDFSQILKEK----DGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVE 171
Query: 190 RLFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
+L K ++DVK + +SC L GLQ +A+ L + R+G H AGSDS LT RVF K
Sbjct: 172 QLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTK--- 228
Query: 248 LFFEDAIDDDKYC 260
L F D ++ K C
Sbjct: 229 LTF-DLLNSRKQC 240
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 68/109 (62%), Positives = 85/109 (77%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNS 122
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL NS
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLANS 119
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 67/108 (62%), Positives = 84/108 (77%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQN 121
LKIIQ+GLTF + K P G TWQFNFKF+L EDMY+QDSIDLL N
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNLTEDMYSQDSIDLLAN 118
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 90/237 (37%), Positives = 125/237 (52%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
EVW N Q E IR + N I IDTEFPG + + D ++ E +Y +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMD--ASDEIRYRDMKFNVDNTH 61
Query: 76 IIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+IQ+GLT F K T TW+ N F+ + + SI L+N+G+ + +EEGI
Sbjct: 62 LIQLGLTLF-GKGITK-----TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115
Query: 135 EPADFAELLTTSGVVLNDK---VKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE-LQR 190
E +LN+K ++W++F YD YLLK L + LP EF E +Q+
Sbjct: 116 ---GIEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLT-RKPLPETSKEFDETVQQ 171
Query: 191 LFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
L + +YDVK + C L GLQ +A+ L + R+G H AGSDS LT RVF K+
Sbjct: 172 LLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 294 (108.6 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 55/93 (59%), Positives = 71/93 (76%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDL 106
LKIIQ+GLTF + K P G TWQFNFKF+L
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNL 103
Score = 61 (26.5 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 161 SGYDFGYLLKLLMGTRSLP 179
+GYDFGY++KLL +R LP
Sbjct: 104 TGYDFGYMVKLLTDSR-LP 121
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 86/269 (31%), Positives = 143/269 (53%)
Query: 5 VNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQY 64
+N I++ R VW NV EE + + + I DTE+PG++ + F S+S+ Y
Sbjct: 1 MNEIHQPLA-RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECY 57
Query: 65 HFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSG 123
+K NV+ K+IQ G T F++K G W+ NF F D + SI+ L+ G
Sbjct: 58 RAMKGNVENTKLIQCGFTLFNAKG--EIGG--VWEINFSNFGDPSDTRNELSIEFLRRHG 113
Query: 124 IQFQRHKEEGIEPADFAELLTTSGVVLNDK-VKWLSFHSGYDFGYLLKLLMGTRSLPSEE 182
+ Q+ ++EG++ + V + K V++++F YDF Y L +L + LP
Sbjct: 114 LDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGK-LPETH 172
Query: 183 AEFF-ELQRLFFKSIYDVKYLMKSCKNLKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTG 239
EF E+ ++F + +YD K + C+ L GL ++A+ L ++R+G H AGSDSL+T
Sbjct: 173 GEFATEVVKVFGQ-VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTA 231
Query: 240 RVFFKMRELFFEDAIDDDKYC-GHIYGLG 267
VF K++ ++ +D ++ G IYG+G
Sbjct: 232 LVFIKLKHVY-----EDSRFARGLIYGIG 255
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 110 MYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLL 169
MY+QDSIDLL NSG+QFQ+H+EEGI+ FAELL TSGVVL D VKWLSFHSGYDFGY++
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 170 KLLMGTRSLPSEEAEFFELQRLFFKS 195
KLL +R LP EE EFF + LFF S
Sbjct: 61 KLLTDSR-LPEEEHEFFHILNLFFPS 85
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 55/93 (59%), Positives = 71/93 (76%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDL 106
LKIIQ+GLTF + K P G TWQFNFKF+L
Sbjct: 72 LKIIQLGLTFTNEKGEYPSG-INTWQFNFKFNL 103
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 72/223 (32%), Positives = 111/223 (49%)
Query: 29 IRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKS 88
I + +Y +I IDTEFP + + +T E +Y + +VD K+IQ+GLT FD
Sbjct: 4 IEDCLRSYRFIAIDTEFPSTLRETTQ--HATDEERYMDMSFSVDRAKLIQLGLTLFDING 61
Query: 89 CTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGV 148
G TW+ NF +D + SI+ L+ +G+ ++ +EEGI F +
Sbjct: 62 RIG-G---TWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLK 117
Query: 149 VLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKN 208
+ W++FH YD YLLK G +LP F + S+YD+K + C+
Sbjct: 118 KTRRNITWVTFHGSYDIAYLLKGFTG-EALPVTSERFSKAVARVLGSVYDLKVMAGRCEG 176
Query: 209 LKG--GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF 249
L GL+ +A + L+R+G H AGS++ LT VF K+ F
Sbjct: 177 LSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FRS+ +YQY L+ NVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 74 LKIIQIGLTFFDSKSCTP 91
LKIIQ+GLTF + K P
Sbjct: 72 LKIIQLGLTFTNEKGEYP 89
>UNIPROTKB|H0YBT3 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000518541 Uniprot:H0YBT3
Length = 91
Score = 185 (70.2 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 162 GYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLD 221
GYDFGYL+K+L + +LP EE +FFE+ RLFF IYDVKYLMKSCKNLK ++ + D
Sbjct: 2 GYDFGYLIKILTNS-NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKMFFEDHID--D 58
Query: 222 LSRIGPQHQAGSDS 235
G + GS S
Sbjct: 59 AKYCGHLYGLGSGS 72
Score = 102 (41.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 244 KMRELFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNA 279
K ++FFED IDD KYCGH+YGLG + + + GNA
Sbjct: 46 KNLKMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNA 82
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFR 57
I EVWA N++EE IR ++ +Y+YI +DTEFPGVV +P+G+FR
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR 55
>POMBASE|SPBC29A10.09c [details] [associations]
symbol:SPBC29A10.09c "CAF1 family ribonuclease
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003676
"nucleic acid binding" evidence=ISM] [GO:0003723 "RNA binding"
evidence=IC] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006402 "mRNA catabolic
process" evidence=ISM] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 PomBase:SPBC29A10.09c GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004540
HSSP:O95453 eggNOG:NOG145331 PIR:T40064 RefSeq:NP_596054.1
ProteinModelPortal:O94386 EnsemblFungi:SPBC29A10.09c.1
GeneID:2540515 KEGG:spo:SPBC29A10.09c OMA:ASIDHIC OrthoDB:EOG4DZ542
NextBio:20801642 Uniprot:O94386
Length = 427
Score = 100 (40.3 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 16 EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLK 75
E+ +N E + +++ +Y+ ID EF G++ + ++T + +Y L+ +
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61
Query: 76 IIQIGLTFF-----DSKSCTPPGPFTTWQFNFKFDLQEDMYAQ-DSIDLLQNSGIQFQRH 129
I+QIG+TF SC P + + L+ D ++ SI L G F +
Sbjct: 62 ILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQ 121
Query: 130 KEEGI 134
EG+
Sbjct: 122 LTEGV 126
Score = 72 (30.4 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 24/55 (43%), Positives = 28/55 (50%)
Query: 153 KVKWLSFHSGY-DFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYL-MKS 205
K K + H+G D YL L G +P EF EL FKSIYD K L +KS
Sbjct: 272 KKKSVVCHNGMADLVYLFSLFEG--KVPETILEFSELCLSSFKSIYDTKLLYLKS 324
Score = 39 (18.8 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 222 LSRIGPQHQAGSDSLLTGRVF 242
+SR P H+AG DS T +F
Sbjct: 375 MSRKRP-HEAGKDSYDTALLF 394
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 286 0.00086 115 3 11 22 0.37 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 616 (65 KB)
Total size of DFA: 220 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.45u 0.10s 22.55t Elapsed: 00:00:01
Total cpu time: 22.46u 0.10s 22.56t Elapsed: 00:00:01
Start: Thu Aug 15 16:44:56 2013 End: Thu Aug 15 16:44:57 2013