RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6037
(286 letters)
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit
7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 348 bits (895), Expect = e-123
Identities = 181/253 (71%), Positives = 209/253 (82%), Gaps = 2/253 (0%)
Query: 14 IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
I EVWA N+ EE IR +I YNY+ +DTEFPGVVA+P+G+FRS ++YQY L+ NVDL
Sbjct: 2 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 61
Query: 74 LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
LKIIQ+GLTF + + PPG +TWQFNFKF+L EDMYAQDSI+LL SGIQF++H+EEG
Sbjct: 62 LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 120
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
IE FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L +LP EE +FFE+ RLFF
Sbjct: 121 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTN-SNLPEEELDFFEILRLFF 179
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG FFKMRE+FFED
Sbjct: 180 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 239
Query: 254 IDDDKYCGHIYGL 266
IDD KYCGH+YGL
Sbjct: 240 IDDAKYCGHLYGL 252
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 343 bits (881), Expect = e-120
Identities = 92/276 (33%), Positives = 155/276 (56%), Gaps = 19/276 (6%)
Query: 10 EKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKI 69
+R+VW N+ EF IR L++ YN++ I TEF G +A+P+G FRS +Y Y ++
Sbjct: 9 NYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRA 68
Query: 70 NVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRH 129
NVD L IQ+GL+ D+ P +TWQFNF+FD ++++ + +S++LL+ SGI F++H
Sbjct: 69 NVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTESLELLRKSGINFEKH 128
Query: 130 KEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQ 189
+ GI+ +F++LL SG++++D V W+++H+ YD G+L+ +LM S+P+ + +F
Sbjct: 129 ENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMN-DSMPNNKEDFEWWV 187
Query: 190 RLFFKSIYDVKYLMKSCKNL---------------KGGLQEVAEQLDLSRIGPQHQAGSD 234
+ + YD+ + K + + L +A++L L R G
Sbjct: 188 HQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQ 247
Query: 235 SLLTGRVFFKMRELF---FEDAIDDDKYCGHIYGLG 267
SLL F ++ +L F + D KY G IYG+
Sbjct: 248 SLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGID 283
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 33.0 bits (74), Expect = 0.025
Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 17/174 (9%)
Query: 75 KIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
+II+ + ++ + F + D I L + Q R
Sbjct: 28 EIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSD----FCISLTGITQDQVDRADTFPQ 83
Query: 135 EPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFK 194
+ + + K L+ S +D L + F K
Sbjct: 84 VLKKVIDWMKLKELGTKYKYSLLTDGS-WDMSKFLN---------IQCQLSRLKYPPFAK 133
Query: 195 SIYDVKYLMKSCKNLKG---GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKM 245
+++ + + L + E+L + G H DS R+ +M
Sbjct: 134 KWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRM 187
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 33.0 bits (74), Expect = 0.026
Identities = 21/187 (11%), Positives = 44/187 (23%), Gaps = 12/187 (6%)
Query: 75 KIIQIGLTFFDSK---------SCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQ 125
+I ++ L S P + + A+ + ++ S
Sbjct: 26 EIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAK-ASEITGLSSEG 84
Query: 126 FQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEF 185
R ++ G + A L YDF L L + +
Sbjct: 85 LARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVC 144
Query: 186 FELQRLFFKSIYDVKYLMKSCKNLKG-GLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFK 244
+ + + + +G L + + + H A D +F
Sbjct: 145 LDTLPAL-RGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLH 203
Query: 245 MRELFFE 251
Sbjct: 204 RAAELLA 210
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase
(KNTase), C-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 128
Score = 27.1 bits (60), Expect = 1.5
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 177 SLPSEEAEFFELQRLFFKS-IYDVKYLMKSCKNLKGGLQEVAEQLD 221
+ + L + + D + L++S +N G+QE E+
Sbjct: 72 KQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQEWTERHG 117
>d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase)
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 27.7 bits (61), Expect = 1.8
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 83 FFDSKSCTPPGPFTTWQFNFKFDLQEDMY--AQDSIDLLQNSGIQ 125
F DSK W+ + D + A+D L GI+
Sbjct: 432 FMDSKRTGIASWGALWEGWEALQSKLDGFLAAKD----LMAQGIK 472
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the
epsilon subunit of DNA polymerase III {Escherichia coli
[TaxId: 562]}
Length = 174
Score = 26.9 bits (58), Expect = 2.5
Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 23/172 (13%)
Query: 75 KIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGI 134
KII+IG ++ T F + + E D F +E +
Sbjct: 23 KIIEIGAVEVVNRRLTG-NNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFM 81
Query: 135 EPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFK 194
+ AEL+ + + + D T SL + R F
Sbjct: 82 DYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSL--------AVARKMFP 133
Query: 195 SIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIG-PQHQAGSDSLLTGRVFFKM 245
+ L + + ++ H A D+ + V+ M
Sbjct: 134 -------------GKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAM 172
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 226
Score = 26.5 bits (57), Expect = 3.2
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 214 QEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFE 251
+ +L H A D L + + +
Sbjct: 172 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQ 209
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 26.2 bits (56), Expect = 4.5
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 210 KGGLQEVAEQLDLSRIGPQ-HQAGSDSLLTGRVFFKMRE 247
+ L + + + + H A D+ T +F +
Sbjct: 155 QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 193
>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 180
Score = 25.6 bits (56), Expect = 5.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 99 QFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIE 135
QF+ ++D+ D Y + S + SG + K E I
Sbjct: 18 QFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIF 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.420
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,119,168
Number of extensions: 51784
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 13
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)