BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6038
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/677 (57%), Positives = 497/677 (73%), Gaps = 53/677 (7%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 51 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 110
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 111 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 170
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 171 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 230
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + +D ++VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 231 LAKIKQKCPLYEANGQ-ADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 289
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 290 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 349
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 350 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 409
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 410 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 469
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 470 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 526
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 527 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 586
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 587 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 646
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 647 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 706
Query: 645 IVDQILGANYRMPGGKT 661
I DQ LGA Y +P T
Sbjct: 707 IADQFLGAMYTLPRQAT 723
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/673 (57%), Positives = 492/673 (73%), Gaps = 57/673 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 173 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 232
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 233 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 292
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 293 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 352
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 353 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 407
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 408 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 467
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 468 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 527
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 528 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 587
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 588 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 644
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 645 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 704
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 705 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 764
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 765 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 824
Query: 645 IVDQILGANYRMP 657
I DQ LGA Y +P
Sbjct: 825 IADQFLGAMYTLP 837
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/677 (56%), Positives = 493/677 (72%), Gaps = 57/677 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 51 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 110
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 111 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 170
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 171 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 230
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 231 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 285
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 286 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 345
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 346 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 405
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 406 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 465
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 466 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 522
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 523 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 582
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 583 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 642
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 643 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 702
Query: 645 IVDQILGANYRMPGGKT 661
I DQ LGA Y +P T
Sbjct: 703 IADQFLGAMYTLPRQAT 719
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/674 (56%), Positives = 492/674 (72%), Gaps = 57/674 (8%)
Query: 32 PEGLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLT 91
P G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT
Sbjct: 1 PSGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLT 60
Query: 92 LEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISG 151
E +Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SG
Sbjct: 61 FEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSG 120
Query: 152 LAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQIN 211
LAAAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+N
Sbjct: 121 LAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVN 180
Query: 212 MELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKP 271
MEL KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP
Sbjct: 181 MELAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKP 235
Query: 272 LSL-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXX 303
+SL +++ QEELK +L++M E +
Sbjct: 236 VSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEA 295
Query: 304 XNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKD 363
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +D
Sbjct: 296 SEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRD 355
Query: 364 RQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVH 423
RQ+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+
Sbjct: 356 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 415
Query: 424 FNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPP 483
N++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PP
Sbjct: 416 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPP 472
Query: 484 LPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPV 543
LP+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+
Sbjct: 473 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPI 532
Query: 544 LLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYS 589
LLALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS
Sbjct: 533 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 592
Query: 590 FVAVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+VA G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E
Sbjct: 593 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
Query: 643 GHIVDQILGANYRM 656
G I DQ LGA Y +
Sbjct: 653 GRIADQFLGAMYTL 666
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/670 (57%), Positives = 490/670 (73%), Gaps = 57/670 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 121
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 122 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 181
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 182 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 236
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 237 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 296
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 297 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 356
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 357 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 416
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 417 TAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 473
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 474 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 533
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 593
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 594 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653
Query: 645 IVDQILGANY 654
I DQ LGA Y
Sbjct: 654 IADQFLGAMY 663
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/670 (57%), Positives = 490/670 (73%), Gaps = 57/670 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 121
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 122 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 181
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 182 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 236
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 237 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 296
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 297 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 356
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 357 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 416
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 417 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 473
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 474 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 533
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 593
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 594 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653
Query: 645 IVDQILGANY 654
I DQ LGA Y
Sbjct: 654 IADQFLGAMY 663
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/668 (57%), Positives = 489/668 (73%), Gaps = 57/668 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 121
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 122 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 181
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 182 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 236
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 237 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 296
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 297 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 356
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 357 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 416
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 417 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 473
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 474 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 533
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 593
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 594 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653
Query: 645 IVDQILGA 652
I DQ LGA
Sbjct: 654 IADQFLGA 661
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/667 (57%), Positives = 488/667 (73%), Gaps = 57/667 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 121
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 122 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 181
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY+++ + VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 182 LAKIKQKCPLYEANGQ-----AVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 236
Query: 274 L-------------------------VIELQEELKPVLSRM---NEILVXXXXXXXXXXN 305
L +++ QEELK +L++M E +
Sbjct: 237 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 296
Query: 306 VPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
V EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 297 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 356
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 357 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 416
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 417 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 473
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 474 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 533
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 593
Query: 592 AVGASGSDYDTLGLPVKDD-------KDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ + IPRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 594 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653
Query: 645 IVDQILG 651
I DQ LG
Sbjct: 654 IADQFLG 660
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 39/304 (12%)
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDF-EFTGSHLTVKKGYACVPTALAEGLDVH 423
Q+L +H +NLE+A + L +S + WD ++ F +F G H + GY+ + LAEGLD+
Sbjct: 508 QVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQ 567
Query: 424 FNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGIL-KACIQPPKDVLFNP 482
S V I Y+ V V T D T Y+ +VL T+PL +L K IQ FNP
Sbjct: 568 LKSPVQCIDYSGDEVQVTTTD------GTGYSAQKVLVTVPLALLQKGAIQ------FNP 615
Query: 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP---AENLFGHVGSTTASRGELFLFWNL- 538
PL + K+K+I LG G++ K+ L F FWD + FGHV + + RG +F+++
Sbjct: 616 PLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD 675
Query: 539 --YQAPVLLALVAGEAAS---ILEDVSI-----------FPTNTVPQPKETVVTRWKADP 582
+ VL++++AGEA + L+D + F VP P + VTRW DP
Sbjct: 676 PQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDP 735
Query: 583 FAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ + +YSFV G SG YD + ++ +FFAGE T R++P TV GA+LSG++E
Sbjct: 736 WIQMAYSFVKTGGSGEAYDIIAEDIQGT-----VFFAGEATNRHFPQTVTGAYLSGVREA 790
Query: 643 GHIV 646
I
Sbjct: 791 SKIA 794
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 21/240 (8%)
Query: 47 DKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSE 106
D M +E+ FP+ S +P +L +RN IL +W N K LT + + I
Sbjct: 261 DVMELDELYEFPEYSRDPT----MYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVR 316
Query: 107 ---VQLVSRLHCYLERHGYINFGIF-----QRITPIPVKKSGKVIVIGAGISGLAAARHM 158
VQ V R+ ++ R G IN G+ Q + P VI+IGAG +GLAAAR +
Sbjct: 317 IRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKS-VIIIGAGPAGLAAARQL 375
Query: 159 EQFGIEVVVLEARERVGGRIVTFKKSNYVA-DLGAMVVTGLGGNPINILARQINMELLKI 217
FGI+V VLEA++R+GGR+ K V GA +V G NP+ ++ Q+ + + K
Sbjct: 376 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKF 435
Query: 218 GHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIE 277
G +C L Q +D D ++ FN LL+ S D L+ PL IE
Sbjct: 436 GERCDLIQEGGRITD-----PTIDKRMDFHFNALLDVVSEWRK--DKTQLQDVPLGEKIE 488
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 39/304 (12%)
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDF-EFTGSHLTVKKGYACVPTALAEGLDVH 423
Q+L +H +NLE+A + L +S + WD ++ F +F G H + GY+ + LAEGLD+
Sbjct: 496 QVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQ 555
Query: 424 FNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGIL-KACIQPPKDVLFNP 482
S V I Y+ V V T D T Y+ +VL T+PL +L K IQ FNP
Sbjct: 556 LKSPVQCIDYSGDEVQVTTTD------GTGYSAQKVLVTVPLALLQKGAIQ------FNP 603
Query: 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP---AENLFGHVGSTTASRGELFLFWNL- 538
PL + K+K+I LG G++ K+ L F FWD + FGHV + + RG +F+++
Sbjct: 604 PLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD 663
Query: 539 --YQAPVLLALVAGEAAS---ILEDVSI-----------FPTNTVPQPKETVVTRWKADP 582
+ VL++++AGEA + L+D + F VP P + VTRW DP
Sbjct: 664 PQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDP 723
Query: 583 FAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ + +YSFV G SG YD + ++ +FFAGE T R++P TV GA+LSG++E
Sbjct: 724 WIQMAYSFVKTGGSGEAYDIIAEDIQGT-----VFFAGEATNRHFPQTVTGAYLSGVREA 778
Query: 643 GHIV 646
I
Sbjct: 779 SKIA 782
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 21/240 (8%)
Query: 47 DKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSE 106
D M +E+ FP+ S +P +L +RN IL +W N K LT + + I
Sbjct: 249 DVMELDELYEFPEYSRDPT----MYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVR 304
Query: 107 ---VQLVSRLHCYLERHGYINFGIF-----QRITPIPVKKSGKVIVIGAGISGLAAARHM 158
VQ V R+ ++ R G IN G+ Q + P VI+IGAG +GLAAAR +
Sbjct: 305 IRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKS-VIIIGAGPAGLAAARQL 363
Query: 159 EQFGIEVVVLEARERVGGRIVTFKKSNYVA-DLGAMVVTGLGGNPINILARQINMELLKI 217
FGI+V VLEA++R+GGR+ K V GA +V G NP+ ++ Q+ + + K
Sbjct: 364 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKF 423
Query: 218 GHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIE 277
G +C L Q +D D ++ FN LL+ S D L+ PL IE
Sbjct: 424 GERCDLIQEGGRITD-----PTIDKRMDFHFNALLDVVSEWRK--DKTQLQDVPLGEKIE 476
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 39/304 (12%)
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDF-EFTGSHLTVKKGYACVPTALAEGLDVH 423
Q+L +H +NLE+A + L +S + WD ++ F +F G H + GY+ + LAEGLD+
Sbjct: 488 QVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQ 547
Query: 424 FNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGIL-KACIQPPKDVLFNP 482
S V I Y+ V V T D T Y+ +VL T+PL +L K IQ FNP
Sbjct: 548 LKSPVQCIDYSGDEVQVTTTD------GTGYSAQKVLVTVPLALLQKGAIQ------FNP 595
Query: 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP---AENLFGHVGSTTASRGELFLFWNL- 538
PL + K+K+I LG G++ K+ L F FWD + FGHV + + RG +F+++
Sbjct: 596 PLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD 655
Query: 539 --YQAPVLLALVAGEAAS---ILEDVSI-----------FPTNTVPQPKETVVTRWKADP 582
+ VL++++AGEA + L+D + F VP P + VTRW DP
Sbjct: 656 PQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDP 715
Query: 583 FAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ + +YSFV G SG YD + ++ +FFAGE T R++P TV GA+LSG++E
Sbjct: 716 WIQMAYSFVKTGGSGEAYDIIAEDIQGT-----VFFAGEATNRHFPQTVTGAYLSGVREA 770
Query: 643 GHIV 646
I
Sbjct: 771 SKIA 774
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 21/240 (8%)
Query: 47 DKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSE 106
D M +E+ FP+ S +P +L +RN IL +W N K LT + + I
Sbjct: 241 DVMELDELYEFPEYSRDPT----MYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVR 296
Query: 107 ---VQLVSRLHCYLERHGYINFGIF-----QRITPIPVKKSGKVIVIGAGISGLAAARHM 158
VQ V R+ ++ R G IN G+ Q + P VI+IGAG +GLAAAR +
Sbjct: 297 IRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKS-VIIIGAGPAGLAAARQL 355
Query: 159 EQFGIEVVVLEARERVGGRIVTFKKSNYVA-DLGAMVVTGLGGNPINILARQINMELLKI 217
FGI+V VLEA++R+GGR+ K V GA +V G NP+ ++ Q+ + + K
Sbjct: 356 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKF 415
Query: 218 GHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIE 277
G +C L Q +D D ++ FN LL+ S D L+ PL IE
Sbjct: 416 GERCDLIQEGGRITD-----PTIDKRMDFHFNALLDVVSEWRK--DKTQLQDVPLGEKIE 468
>pdb|2COM|A Chain A, The Solution Structure Of The Swirm Domain Of Human Lsd1
Length = 124
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 84/106 (79%)
Query: 35 LEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEF 94
+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 13 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEA 72
Query: 95 VMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSG 140
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+G
Sbjct: 73 TLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTG 118
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 142/534 (26%), Positives = 218/534 (40%), Gaps = 126/534 (23%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG 199
+VIV+GAG+SG++AA+ + + GI ++++LEA + +GGR+ K+N+ A + LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM---HKTNF-----AGINVELG 57
Query: 200 GNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLS 259
N + E + G P++ P L R F + +
Sbjct: 58 ANWV---------EGVNGGKMNPIW------------PIVNSTLKLRNFRSDFDYLAQNV 96
Query: 260 HTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVXXXXXXXXXXNVPIDNTTAVEFQKR 319
+ D + + IEL + ++ + +++ L
Sbjct: 97 YKEDGGVYDEDYVQKRIELADSVEEMGEKLSATL------------------------HA 132
Query: 320 STRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFAN----LE 375
S R DM+ L + +L+ + N PA V D D+ FA
Sbjct: 133 SGRDDMSILAMQ-------------RLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 179
Query: 376 FANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL-------------DV 422
N PLA+ S D DD F ++GY V LA +
Sbjct: 180 LQNTVPLATFS----DFGDDVYFVAD----QRGYEAVVYYLAGQYLKTDDKSGKIVDPRL 231
Query: 423 HFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNP 482
N V EI Y+ GVTVKT D +VY+ D V+ + LG+L++ + + F P
Sbjct: 232 QLNKVVREIKYSPGGVTVKTED------NSVYSADYVMVSASLGVLQSDL-----IQFKP 280
Query: 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFW--DPAENLFGHVGSTTASRGELFLFWNLY- 539
LP WKV++I + + K+ L F + FW F + S G F Y
Sbjct: 281 KLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYP 340
Query: 540 QAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAK 585
A VLL V E + +E S +FP VP + +V RW +D F K
Sbjct: 341 DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYK 400
Query: 586 GSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
G++S VG + +YD L PV R++F GEHT +Y VHGA+LSG+
Sbjct: 401 GTFSNWPVGVNRYEYDQLRAPVG------RVYFTGEHTSEHYNGYVHGAYLSGI 448
>pdb|2L3D|A Chain A, The Solution Structure Of The Short Form Swirm Domain Of
Lsd1
Length = 102
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 79/101 (78%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 SVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPI 134
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPL 102
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 141/534 (26%), Positives = 217/534 (40%), Gaps = 126/534 (23%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG 199
+VIV+GAG+SG++AA+ + + GI ++++LEA + +GGR+ K+N+ A + LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM---HKTNF-----AGINVELG 57
Query: 200 GNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLS 259
N + E + G P++ P L R F + +
Sbjct: 58 ANWV---------EGVNGGKMNPIW------------PIVNSTLKLRNFRSDFDYLAQNV 96
Query: 260 HTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVXXXXXXXXXXNVPIDNTTAVEFQKR 319
+ D + + IEL + ++ + +++ L
Sbjct: 97 YKEDGGVYDEDYVQKRIELADSVEEMGEKLSATL------------------------HA 132
Query: 320 STRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFAN----LE 375
S R DM+ L + +L+ + N PA V D D+ FA
Sbjct: 133 SGRDDMSILAMQ-------------RLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 179
Query: 376 FANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL-------------DV 422
N PLA+ S D DD F ++GY V LA +
Sbjct: 180 LQNTVPLATFS----DFGDDVYFVAD----QRGYEAVVYYLAGQYLKTDDKSGKIVDPRL 231
Query: 423 HFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNP 482
N V EI Y+ GVTVKT D +VY+ D V+ + LG+L++ + + F P
Sbjct: 232 QLNKVVREIKYSPGGVTVKTED------NSVYSADYVMVSASLGVLQSDL-----IQFKP 280
Query: 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFW--DPAENLFGHVGSTTASRGELFLFWNLY- 539
LP WKV++I + + + L F + FW F + S G F Y
Sbjct: 281 KLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYP 340
Query: 540 QAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAK 585
A VLL V E + +E S +FP VP + +V RW +D F K
Sbjct: 341 DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYK 400
Query: 586 GSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
G++S VG + +YD L PV R++F GEHT +Y VHGA+LSG+
Sbjct: 401 GTFSNWPVGVNRYEYDQLRAPVG------RVYFTGEHTSEHYNGYVHGAYLSGI 448
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 123/287 (42%), Gaps = 53/287 (18%)
Query: 386 SLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVTEIHYNSKGVTVKTV 443
SLKH DD F + + G +PT++ + + VH N+ V +I + K VTV
Sbjct: 233 SLKH---DDIFAYEKRFDEIVGGMDKLPTSMYQAIQEKVHLNARVIKIQQDVKEVTVTY- 288
Query: 444 DPKTGQNETV-YTGDRVL-CTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLN 501
+T + ET+ T D V+ CT + + + F PPLP K ++R + Y
Sbjct: 289 --QTSEKETLSVTADYVIVCTTS--------RAARRIKFEPPLPPKKAHALRSVHYRSGT 338
Query: 502 KVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAP----VLLALVAGEAASILE 557
K+ L K FW E+ H G +T F+++ + P V++A G+ A+ E
Sbjct: 339 KIFLTCTKKFW---EDDGIHGGKSTTDLPSRFIYYPNHNFPNGVGVIIAYGIGDDANYFE 395
Query: 558 --------DVSIFPTNTVPQ-PKE--------TVVTRWKADPFAKGSYSFVAVGASGSDY 600
D+ I + + Q PKE +++ RW D +A G +
Sbjct: 396 ALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFS 455
Query: 601 DTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647
+ L PV R++FAGE+T A HG S +K G +D
Sbjct: 456 EALTAPVD------RIYFAGEYT-----AQAHGWIASTIKSGPEGLD 491
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAM 193
+V+++GAG+SGL+AA + G +V VLEA ER GG++ T++ K + A+LG M
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYRNEKEGWYANLGPM 102
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 51/281 (18%)
Query: 386 SLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVTEIHYNSKGVTVKTV 443
SL+H DD F + + G +PT++ ++ VH N+ V +I N++ VTV
Sbjct: 220 SLRH---DDIFAYEKRFDEIVGGMDKLPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQ 276
Query: 444 DPKTGQNETVYTGDRVL-CTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNK 502
P + T D V+ CT + + + F PPLP K ++R + Y K
Sbjct: 277 TP--AKEMASVTADYVIVCTTS--------RATRRIKFEPPLPPKKAHALRSVHYRSGTK 326
Query: 503 VVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ----APVLLALVAGEAASILE- 557
+ L K FW E+ H G +T F+++ + V++A G+ A+ +
Sbjct: 327 IFLTCTKKFW---EDEGIHGGKSTTDLPSRFIYYPNHNFTSGVGVIIAYGIGDDANFFQA 383
Query: 558 -------DVSIFPTNTVPQ-PKE--------TVVTRWKADPFAKGSYSFVAVGASGSDYD 601
D+ I + + Q P+E +++ +W D +A G + + + Y
Sbjct: 384 LDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKWSLDKYAMGGIT------TFTPYQ 437
Query: 602 TLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ R++FAGEHT A HG S +K G
Sbjct: 438 FQHFSESLTASVDRIYFAGEHT-----AEAHGWIDSTIKSG 473
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAM 193
V+V+GAG+SGL+AA + G +V VLEA ER GGR+ T++ K ++ A+LG M
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKEDWYANLGPM 89
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS--NYVADLGAMVVTGLG 199
V+VIG GISGL+AA+ + ++G+ V+VLEAR+RVGGR T + +YV GA V G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV--GPT 62
Query: 200 GNPINILARQINMELLKI 217
N I L++++ +E K+
Sbjct: 63 QNRILRLSKELGIETYKV 80
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS--NYVADLGAMVVTGLG 199
V+VIG GISGL+AA+ + ++G+ V+VLEAR+RVGGR T + +YV GA V G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV--GPT 73
Query: 200 GNPINILARQINMELLKI 217
N I L++++ +E K+
Sbjct: 74 QNRILRLSKELGIETYKV 91
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS--NYVADLGAMVVTGLG 199
V+VIG GISGL+AA+ + ++G+ V+VLEAR+RVGGR T + +YV GA V G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV--GPT 62
Query: 200 GNPINILARQINMELLKI 217
N I L++++ +E K+
Sbjct: 63 QNRILRLSKELGIETYKV 80
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 108/285 (37%), Gaps = 82/285 (28%)
Query: 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKD----VLFNPPLPDWKVK 490
SK VTV D TVY D V+ T+P +L +QP K+ + F PPL
Sbjct: 231 SKNVTVNCEDG------TVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 491 SIRRLGYGLLNKVVLCFDKIFWD---------------------PAENL----------- 518
+ ++ +G L KV+ F++ W AENL
Sbjct: 285 AFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERED 344
Query: 519 -FGHVGSTTASRGELFL----------FWNLYQAPV-------------LLALVAGEAAS 554
H T S+ F+ F L QAP+ L +
Sbjct: 345 SQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNK 404
Query: 555 IL-----EDV--SIFPTNTVPQPKETVV-----TRWKADPFAKGSYSFVAVGASGSDYDT 602
I+ EDV + P + + V+ + W DP+++G+YS G D
Sbjct: 405 IMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVD--- 461
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647
+ + + + +D R+ FAGEHTI + +GA+ SG +E I D
Sbjct: 462 MVVAMSNGQD-SRIRFAGEHTIMDGAGCAYGAWESGRREATRISD 505
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT---FKKSNYV 187
T P KK KVI+IGAGI+GL AA + Q GI+ +VLEAR+RVGGR+ T ++ Y
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY- 59
Query: 188 ADLGAMVVTGLGGNPINILARQINM 212
D+GA NP+ + Q+++
Sbjct: 60 -DIGASWHHDTLTNPLFLEEAQLSL 83
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 108/285 (37%), Gaps = 82/285 (28%)
Query: 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKD----VLFNPPLPDWKVK 490
SK VTV D TVY D V+ T+P +L +QP K+ + F PPL
Sbjct: 231 SKNVTVNCEDG------TVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 491 SIRRLGYGLLNKVVLCFDKIFWD---------------------PAENL----------- 518
+ ++ +G L KV+ F++ W AENL
Sbjct: 285 AFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERED 344
Query: 519 -FGHVGSTTASRGELFL----------FWNLYQAPV-------------LLALVAGEAAS 554
H T S+ F+ F L QAP+ L +
Sbjct: 345 SQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNK 404
Query: 555 IL-----EDV--SIFPTNTVPQPKETVV-----TRWKADPFAKGSYSFVAVGASGSDYDT 602
I+ EDV + P + + V+ + W DP+++G+YS G D
Sbjct: 405 IMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVD--- 461
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647
+ + + + +D R+ FAGEHTI + +GA+ SG +E I D
Sbjct: 462 MVVAMSNGQD-SRIRFAGEHTIMDGAGCAYGAWESGRREATRISD 505
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT---FKKSNYV 187
T P KK KVI+IGAGI+GL AA + Q GI+ +VLEAR+RVGGR+ T ++ Y
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY- 59
Query: 188 ADLGAMVVTGLGGNPINILARQINM 212
D+GA NP+ + Q+++
Sbjct: 60 -DIGASWHQDTLTNPLFLEEAQLSL 83
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 108/285 (37%), Gaps = 82/285 (28%)
Query: 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKD----VLFNPPLPDWKVK 490
SK VTV D TVY D V+ T+P +L +QP K+ + F PPL
Sbjct: 231 SKNVTVNCEDG------TVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 491 SIRRLGYGLLNKVVLCFDKIFWD---------------------PAENL----------- 518
+ ++ +G L KV+ F++ W AENL
Sbjct: 285 AFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERED 344
Query: 519 -FGHVGSTTASRGELFL----------FWNLYQAPV-------------LLALVAGEAAS 554
H T S+ F+ F L QAP+ L +
Sbjct: 345 SQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNK 404
Query: 555 IL-----EDV--SIFPTNTVPQPKETVV-----TRWKADPFAKGSYSFVAVGASGSDYDT 602
I+ EDV + P + + V+ + W DP+++G+YS G D
Sbjct: 405 IMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVD--- 461
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647
+ + + + +D R+ FAGEHTI + +GA+ SG +E I D
Sbjct: 462 MVVAMSNGQD-SRIRFAGEHTIMDGAGCAYGAWESGRREATRISD 505
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT---FKKSNYV 187
T P KK KVI+IGAGI+GL AA + Q GI+ +VLEAR+RVGGR+ T ++ Y
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY- 59
Query: 188 ADLGAMVVTGLGGNPINILARQINM 212
D+GA NP+ + Q+++
Sbjct: 60 -DIGASWHHDTLTNPLFLEEAQLSL 83
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 108/285 (37%), Gaps = 82/285 (28%)
Query: 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKD----VLFNPPLPDWKVK 490
SK VTV D TVY D V+ T+P +L +QP K+ + F PPL
Sbjct: 231 SKNVTVNCEDG------TVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 491 SIRRLGYGLLNKVVLCFDKIFWD---------------------PAENL----------- 518
+ ++ +G L KV+ F++ W AENL
Sbjct: 285 AFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERED 344
Query: 519 -FGHVGSTTASRGELFL----------FWNLYQAPV-------------LLALVAGEAAS 554
H T S+ F+ F L QAP+ L +
Sbjct: 345 SQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNK 404
Query: 555 IL-----EDV--SIFPTNTVPQPKETVV-----TRWKADPFAKGSYSFVAVGASGSDYDT 602
I+ EDV + P + + V+ + W DP+++G+YS G D
Sbjct: 405 IMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVD--- 461
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647
+ + + + +D R+ FAGEHTI + +GA+ SG +E I D
Sbjct: 462 MVVAMSNGQD-SRIRFAGEHTIMDGAGCAYGAWESGRREATRISD 505
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT---FKKSNYV 187
T P KK KVI+IGAGI+GL AA + Q GI+ +VLEAR+RVGGR+ T ++ Y
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY- 59
Query: 188 ADLGAMVVTGLGGNPINILARQINM 212
D+GA NP+ + Q+++
Sbjct: 60 -DIGASWHHDTLTNPLFLEEAQLSL 83
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY-VADLGAMVVTGLGG 200
V+VIG GISGLAAA+ + ++ I V+VLEAR+RVGGR T + + D+G V G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYV-GPTQ 82
Query: 201 NPINILARQINMELLKI 217
N I L++++ +E K+
Sbjct: 83 NRILRLSKELGIETYKV 99
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDV 478
G V +S VT I + V+T+ N Y V+ +P IL A I
Sbjct: 243 GDKVKLSSPVTYIDQTDDNIIVETL------NHEHYECKYVISAIP-PILTAKIH----- 290
Query: 479 LFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
F P LP + + I+RL G + K ++ + + FW
Sbjct: 291 -FKPELPPERNQLIQRLPMGAVIKCMVYYKEAFW 323
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 53/282 (18%)
Query: 386 SLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVTEIHYNSKGVTV--K 441
SLKH DD F + + G +PT++ ++ V FN+ V +I N+ VTV +
Sbjct: 220 SLKH---DDIFAYEKRFDEIVGGMDQLPTSMYRAIEEKVKFNARVIKIQQNANQVTVTYQ 276
Query: 442 TVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLN 501
T + T N Y ++CT + + + F PPLP K ++R + Y
Sbjct: 277 TPEKDTSSNTADYV---IVCTTS--------RAARRIQFEPPLPPKKQHALRSVHYRSGT 325
Query: 502 KVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ----APVLLALVAGEAASILE 557
K+ L FW E+ H G +T F+++ + V++A G+ A+ +
Sbjct: 326 KIFLTCSSKFW---EDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAYGIGDDANFFQ 382
Query: 558 --------DVSIFPTNTVPQ-PKE--------TVVTRWKADPFAKGSYSFVAVGASGSDY 600
D+ + + Q PKE +++ +W D +A G+ +
Sbjct: 383 ALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITTFTPYQFQRFS 442
Query: 601 DTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ L P R+FFAGE+T A HG S +K G
Sbjct: 443 EALTAPQG------RIFFAGEYT-----AEAHGWIDSTIKSG 473
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVV 195
V+V+GAG+SGL+AA + G +V VLEA ER GGR+ T + K + A+LG M +
Sbjct: 36 VVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKEGWYANLGPMRI 91
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGG 200
+V VIGAG+SGLAAA ++ G+ V V EA + GG++ + + + D GA T G
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEG 74
Query: 201 NPINILARQINMELLKIGHQCPLYQSS---AENSDNLQVPKDKDDLVEREFNRLLECTSY 257
+ + L + L+ Q PL Q+ A N + +P + DL++ F L S
Sbjct: 75 D-VTFLIDSLG---LREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNF---LSTGSK 127
Query: 258 LSHTLDFNYLEGKPLSLVIELQEELKPVLSR 288
L L+ + K LS V + E + R
Sbjct: 128 LQXLLEPILWKNKKLSQVSDSHESVSGFFQR 158
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 386 SLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVTEIHYNSKGVTVKTV 443
SLKH DD F + + G +PTA+ + VHFN+ V +I N + VTV
Sbjct: 220 SLKH---DDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTV-VY 275
Query: 444 DPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKV 503
+ + + +V ++CT + + + FNPPL K ++R + Y K+
Sbjct: 276 ETLSKETPSVTADYVIVCTTSRAV--------RLIKFNPPLLPKKAHALRSVHYRSGTKI 327
Query: 504 VLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ----APVLLALVAGEAASILE-- 557
L FW E+ H G +T F+++ + V++A G+ A+ +
Sbjct: 328 FLTCTTKFW---EDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQAL 384
Query: 558 ------DVSIFPTNTVPQ-PKE--------TVVTRWKADPFAKGSYSFVAVGASGSDYDT 602
D+ + + Q PK+ +V+ +W D +A G + + +
Sbjct: 385 DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTF----TPYQFQH 440
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
P+ + R++FAGE+T A HG S +K G
Sbjct: 441 FSDPLTASQG--RIYFAGEYT-----AQAHGWIDSTIKSG 473
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAM 193
V+++GAG++GL+AA + G +V VLEA ER GGR+ T++ ++ + A+LG M
Sbjct: 36 VVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPM 89
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT---FKKSNYV 187
T P KK KVI+IGAGI+GL AA + Q GI+ +VLEAR+RVGGR+ T ++ Y
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY- 59
Query: 188 ADLGAMVVTGLGGNPINILARQINM 212
D+GA NP+ + Q+++
Sbjct: 60 -DIGASWHHDTLTNPLFLEEAQLSL 83
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 518 LFGHVGSTTASRGELFLFWNLYQAPVLLALVAGEAASILEDVSIFPTNTVPQPKETVVTR 577
L H+ S + LF F+ + L + + + P + +V+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIANANKPVLRNIIVSN 439
Query: 578 WKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLS 637
W DP+++G+YS G D +D R+ FAGEHTI + +GA+ S
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDXVVAXSNGQD----SRIRFAGEHTIXDGAGCAYGAWES 495
Query: 638 GLKEGGHIVD 647
G +E I D
Sbjct: 496 GRREATRISD 505
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKD----VLFNPPLPDWKVK 490
SK VTV D TVY D V+ T+P +L +QP K+ + F PPL
Sbjct: 231 SKNVTVNCEDG------TVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 491 SIRRLGYGLLNKVVLCFDKIFW 512
+ ++ +G L KV+ F++ W
Sbjct: 285 AFDKIHFGALGKVIFEFEECCW 306
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 70
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 71 AKELGLETYKV 81
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 269
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 270 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 305
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 40/247 (16%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW-----------DPAENLFGHVGST 525
+ FNPPLP + + I R+ G + K ++ + + FW D E +
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD 330
Query: 526 TASRGE---LFLFWNLYQAPVLLALVAGEAASILEDV--SIFPTNTVPQPKETVVTRWKA 580
T G + F ++A L L E L ++ + + +P W
Sbjct: 331 TKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCE 390
Query: 581 DPFAKGSY-SFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
+ ++ G Y ++ G L PV R++FAG T ++ + GA +G
Sbjct: 391 EQYSGGCYTTYFPPGILTQYGRVLRQPVD------RIYFAGTETATHWSGYMEGAVEAGE 444
Query: 640 KEGGHIV 646
+ I+
Sbjct: 445 RAAREIL 451
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 70
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 71 AKELGLETYKV 81
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 269
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 270 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 305
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 40/247 (16%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW-----------DPAENLFGHVGST 525
+ FNPPLP + + I R+ G + K ++ + + FW D E +
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD 330
Query: 526 TASRGE---LFLFWNLYQAPVLLALVAGEAASILEDV--SIFPTNTVPQPKETVVTRWKA 580
T G + F ++A L L E L ++ + + +P W
Sbjct: 331 TKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCE 390
Query: 581 DPFAKGSY-SFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
+ ++ G Y ++ G L PV R++FAG T ++ + GA +G
Sbjct: 391 EQYSGGCYTTYFPPGILTQYGRVLRQPVD------RIYFAGTETATHWSGLMEGAVEAGE 444
Query: 640 KEGGHIV 646
+ I+
Sbjct: 445 RAAREIL 451
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINIL 206
ISG+AAA+ + G+ VVVLEAR+RVGGR T + K YV DLG V G N I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV-DLGGSYV-GPTQNRILRL 71
Query: 207 ARQINMELLKI 217
A+++ +E K+
Sbjct: 72 AKELGLETYKV 82
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP--LGILKACIQPPK 476
G V V I + V V+T+ N +Y V+ +P LG+
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETL------NHEMYEAKYVISAIPPTLGM--------- 270
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+ FNPPLP + + I R+ G + K ++ + + FW
Sbjct: 271 KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
V+++GAG SGL AAR +++ G+ V VLEAR+RVGGR T + ++G V+
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS 64
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 37/201 (18%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDV 478
G DV NS V I ++ GV+V + +R I+ V
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVS--------------ERATVNARFVIMAVPPNLYSRV 273
Query: 479 LFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTA----------- 527
F+PPLP + + + GL+ KV +D FW E L G S A
Sbjct: 274 SFDPPLPRRQHQMHQHQSLGLVIKVHAVYDTPFWRE-EGLSGTGFSAGALVQEVYDNTNH 332
Query: 528 --SRGELFLFWNLYQAPVLLALVAGE-AASILEDVSIFPTNTVPQPKETVVTRWKADPFA 584
SRG L F + +A + L A + +ILE ++ F + P+ + W ++ +
Sbjct: 333 GDSRGTLVGFVSDEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWT 392
Query: 585 KGSYSFVAVGASGSDYDTLGL 605
+G+Y+ S YD GL
Sbjct: 393 RGAYA--------SSYDLGGL 405
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
V ++GAGISGLAAA + + G+ V V+EAR+RVGGR T V ++G V+
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS 62
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 28/200 (14%)
Query: 405 VKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
V G V +AE L DV N+ V + +N G TV + RV+
Sbjct: 210 VIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATV------LADGDIRVEASRVILA 263
Query: 463 LPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP-------- 514
+P + + ++PPLP + + + GL+ KV ++ FW
Sbjct: 264 VPPNLYSR-------ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF 316
Query: 515 -AENLFGHVGSTT---ASRGELFLFWNLYQAPVLLALVAGE-AASILEDVSIFPTNTVPQ 569
A + V T RG L F + +A + L A E A+IL ++ + +
Sbjct: 317 GASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEE 376
Query: 570 PKETVVTRWKADPFAKGSYS 589
P + W ++ + +G Y+
Sbjct: 377 PVVYYESDWGSEEWTRGCYA 396
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Query: 142 VIVIGAGISGLAAARHMEQ------FGIEVVVLEARERVGGRIVTFKKSNYVADLG 191
V++IG GI+GLAAA +ME+ +E+ ++EA RVGG+I T KK Y+ + G
Sbjct: 8 VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERG 63
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
V ++GAG SGLAAA + + G+ V V+EAR+RVGGR T V ++G V+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS 62
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 28/200 (14%)
Query: 405 VKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
V G V +AE L DV N+ V + +N G TV + RV+
Sbjct: 210 VIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATV------LADGDIRVEASRVILA 263
Query: 463 LPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP-------- 514
+P + + ++PPLP + + + GL+ KV ++ FW
Sbjct: 264 VPPNLYSR-------ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF 316
Query: 515 -AENLFGHVGSTT---ASRGELFLFWNLYQAPVLLALVAGE-AASILEDVSIFPTNTVPQ 569
A + V T RG L F + +A + L A E A+IL ++ + +
Sbjct: 317 GASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEE 376
Query: 570 PKETVVTRWKADPFAKGSYS 589
P + W ++ + +G Y+
Sbjct: 377 PVVYYESDWGSEEWTRGCYA 396
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
V ++GAG SGLAAA + + G+ V V+EAR+RVGGR T V ++G V+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS 62
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 28/200 (14%)
Query: 405 VKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
V G V +AE L DV N+ V + +N G TV + RV+
Sbjct: 210 VIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATV------LADGDIRVEASRVILA 263
Query: 463 LPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP-------- 514
+P + + ++PPLP + + + GL+ KV ++ FW
Sbjct: 264 VPPNLYSR-------ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF 316
Query: 515 -AENLFGHVGSTT---ASRGELFLFWNLYQAPVLLALVAGE-AASILEDVSIFPTNTVPQ 569
A + V T RG L F + +A + L A E A+IL ++ + +
Sbjct: 317 GASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEE 376
Query: 570 PKETVVTRWKADPFAKGSYS 589
P + W ++ + +G Y+
Sbjct: 377 PVVYYESDWGSEEWTRGCYT 396
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
V ++GAG SGLAAA + + G+ V V+EAR+RVGGR T V ++G V+
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS 62
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 405 VKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
V G V +AE L DV N+ V + +N G TV + RV+
Sbjct: 210 VIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATV------LADGDIRVEASRVILA 263
Query: 463 LPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP-------- 514
+P + + ++PPLP + + + GL+ KV ++ FW
Sbjct: 264 VPPNLYSR-------ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF 316
Query: 515 -AENLFGHVGSTT---ASRGELFLFWNLYQAPVLLALVAGE-AASILEDVSIFPTNTVPQ 569
A + V T RG L F + +A + L A E A+IL ++ + +
Sbjct: 317 GASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEE 376
Query: 570 PKETVVTRWKADPFAKGSYS 589
P + W ++ + +G+Y+
Sbjct: 377 PVVYYESDWGSEEWTRGAYA 396
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 109/545 (20%), Positives = 204/545 (37%), Gaps = 98/545 (17%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
VK S V+V+G G +GL +A +++ G +V VLEAR R GGR V
Sbjct: 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR----------------VW 51
Query: 196 TGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDL-VEREFNRLLEC 254
T GG+ L+ + +C + N ++P+ L RE ++
Sbjct: 52 TARGGSEETDLSGET--------QKCTFSEGHFYNVGATRIPQSHITLDYCRELGVEIQG 103
Query: 255 TSYLSHTLDFNYLEGKPLS-LVIELQEELKPVLSRMNEILVXXXXXXXXXXNVPIDNTTA 313
+ NY LS + + M+E+L D
Sbjct: 104 FGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGYMSELL-----------KKATDQGAL 152
Query: 314 VEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFAN 373
+ R + ++ +++ L++ L + +S P A + + +
Sbjct: 153 DQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKK--------- 203
Query: 374 LEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAE--GLD-VHFNSSVTE 430
FA + S +++ D ++ T G + A + G D + F + VT
Sbjct: 204 -PFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTS 262
Query: 431 IHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP---LGILKACIQPPKDVLFNPPLPDW 487
+ S+GVTV+ G ++ T D +CT+P +G L+ + P DVL L
Sbjct: 263 MKNVSEGVTVEYT---AGGSKKSITADYAICTIPPHLVGRLQNNL--PGDVL--TALKAA 315
Query: 488 KVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAP---VL 544
K S +LG + + + +W+ + ++G +T ++ ++ Y + V+
Sbjct: 316 KPSSSGKLG--------IEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVV 367
Query: 545 LALVAGE--------------AASILEDVSIFPTNTVPQPKETVVTRWKADPFAKGSYS- 589
+G+ A +I E I + W+ +++ +++
Sbjct: 368 AYYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWAN 427
Query: 590 -----FVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
GA+ +Y+ L PV +++FAG+H + N A HGA S H
Sbjct: 428 WAGSGGSHGGAATPEYEKLLEPVD------KIYFAGDH-LSNAIAWQHGALTSARDVVTH 480
Query: 645 IVDQI 649
I +++
Sbjct: 481 IHERV 485
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 144 VIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
VIGAG GLA A ++ GI V++LE R++ GGR ++ + D G V+T
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVIT 58
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 139 SGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRIVTFKKSNYVADLG 191
S +++++G GI+GLAAA + E+ + + +LEA ER+GG++ T+++ + + G
Sbjct: 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERG 58
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
VIVIG G GL A R + G + ++LEAR+R+GGR + Y ++G V
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWV 95
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
VIVIG G GL A R + G + ++LEAR+R+GGR + Y ++G V
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWV 95
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
VIVIG G GL A R + G + ++LEAR+R+GGR + Y ++G V
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWV 95
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLG 191
+P V V+G GISGLA A H+ G + V+LE+ R+GG + T + Y+ + G
Sbjct: 11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQG 68
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR-ERVGGRIVTF 181
+++++GAGI+GL A + + G +V +LEA RVGGRI TF
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF 87
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN 185
IV+G G SGL AAR + G +V++LE ER+GGR + + N
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN 47
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN 185
IV+G G SGL AAR + G +V++LE ER+GGR + + N
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN 47
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 142 VIVIGAGISGLAAARHMEQFGI--EVVVLEARERVGGRIVTFKKSN 185
V+V+G GISGLAA+ H+ + +VV++E+ ER+GG I + + N
Sbjct: 5 VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPN 50
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
+ +V+V+GAG SGL AAR + G +VV+ EA +GGR+
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KS K++++GAG SG R + + G +V +++ R+ +GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KS K++++GAG SG R + + G +V +++ R+ +GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KS K++++GAG SG R + + G +V +++ R+ +GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
IVIGAG+ GLA AR + G EV+V EA E +G
Sbjct: 7 CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD 189
+P KK V+VIGAG GL A G+EV V+E RV R+VT + S+Y D
Sbjct: 139 MPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHD 192
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
K IVIGAGI GL+AA ++Q GI+ V EA
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEA 54
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
K IVIGAGI GL+AA ++Q GI+ V EA
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEA 54
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+VIGAG++G+ A + Q G++V+ +EA E VGG
Sbjct: 12 AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
K +VIGAG+ GL +A + + G EV V E GGR + GA
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAF 54
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 33/168 (19%)
Query: 41 QSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIE 100
+ +PY++ P +S + KTF I R Q W E+ V++ L + ++
Sbjct: 43 EPEIPYER---------PPLSKEYLAREKTFERICIRPAQFW-EDKAVEMKLGAEVVSLD 92
Query: 101 SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSG-------------------- 140
P V+L + + G +R++ + +G
Sbjct: 93 -PAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAG 151
Query: 141 --KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY 186
+VIG G GL AA + +FG+ V +LEA RV R+ S +
Sbjct: 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 313 AVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAM--------ESNPPADVYLSVKDR 364
AV F + + +N+ E + L+ KK +A A+ E + V ++K+
Sbjct: 32 AVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEF 91
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHL 403
LD N N P LSL +W++ D TG+ L
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFL 130
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 313 AVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAM--------ESNPPADVYLSVKDR 364
AV F + + +N+ E + L+ KK +A A+ E + V ++K+
Sbjct: 32 AVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEF 91
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHL 403
LD N N P LSL +W++ D TG+ L
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFL 130
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 313 AVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAM--------ESNPPADVYLSVKDR 364
AV F + + +N+ E + L+ KK +A A+ E + V ++K+
Sbjct: 32 AVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEF 91
Query: 365 QLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHL 403
LD N N P LSL +W++ D TG+ L
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFL 130
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE-ARERVGG 176
VIV+G G SGL+AA + + G++V+VL+ R +V G
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG 39
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|4AMU|A Chain A, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|B Chain B, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|C Chain C, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|D Chain D, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4ANF|A Chain A, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|B Chain B, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|C Chain C, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|D Chain D, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
Length = 365
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 EDIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRIL 79
+D + H+P L+G + S L + TT EVQ+ D+S + + LHI NR L
Sbjct: 18 DDDDKHMPVNLKGRSLDSLLNF---TTEEVQHLIDLSIDLKKAKYQGLHINNRPL 69
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
I++G+G+ G A +++ +V+V+E R +GG T
Sbjct: 5 IIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G V+
Sbjct: 13 VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 68
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVL-EARERVGGRIVTFKKSN-YVADLGAMVV 195
K+++IGAG +GL AA + + G + L E + GG +F N + DLG V+
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVI 67
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVT-FKKSNYVADLGAMVV 195
V+VIGAG +GL AA+ + Q G ++++ E GG T ++ D+G V+
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDGPSWXIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ KS V++IG G +G AA Q G +E R ++GG
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
K V+++GAG SG AAR + + G V + + E++GG + N VA L
Sbjct: 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL------NQVAAL----- 434
Query: 196 TGLGGNPINILARQINM-ELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLEC 254
GLG + R+ + +LLK + L Q P DD+++ ++++
Sbjct: 435 PGLGEWSYHRDYRETQITKLLKKNKESQLALG--------QKPMTADDVLQYGADKVIIA 486
Query: 255 TSYLSHTLDFNYLEGKPL 272
T +T N L P+
Sbjct: 487 TGARWNTDGTNCLTHDPI 504
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAGI+GL A G+ V EA VGG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAGI+GL A G+ V EA VGG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAGI+GL A G+ V EA VGG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
K V+++GAG SG AAR + + G V + + E++GG + N VA L
Sbjct: 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL------NQVAAL----- 434
Query: 196 TGLGGNPINILARQINM-ELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLEC 254
GLG + R+ + +LLK + L Q P DD+++ ++++
Sbjct: 435 PGLGEWSYHRDYRETQITKLLKKNKESQLALG--------QKPMTADDVLQYGADKVIIA 486
Query: 255 TSYLSHTLDFNYLEGKPL 272
T +T N L P+
Sbjct: 487 TGARWNTDGTNCLTHDPI 504
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG SGL A + + G V V+E VGG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG SGL A + + G V V+E VGG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG SGL A + + G V V+E VGG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG SGL A + + G V V+E VGG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEAR------ERVGG---RIVTFKKSNYVAD--L 190
V+V+GAG+ GL+ A + + G+ V+V+E R R G R + + VAD +
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVV 67
Query: 191 GAMVVTGLGGNPINILARQINMELLK 216
A + G G+ + LA + E+L+
Sbjct: 68 RADDIRGTQGDFVIRLAESVRGEILR 93
>pdb|2DCE|A Chain A, Solution Structure Of The Swirm Domain Of Human Kiaa1915
Protein
Length = 111
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 71 FLHIRNRILQMW-LENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQ 129
+L IRN IL W + PK L V +++ +V + R+H YLE G INFG Q
Sbjct: 50 YLKIRNYILDQWEICKPKY-LNKTSVRPGLKN--CGDVNCIGRIHTYLELIGAINFGCEQ 106
Query: 130 RI 131
+
Sbjct: 107 AV 108
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG G SGL+A + + G+ V+L+A GG
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
I+IGAG +GL A + + G V V + +++G +I+
Sbjct: 8 IIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHM-EQFGI-EVVVLEARERVGG---RIVTFK 182
F P P KKS I++G G GLA A + + GI V VLE GG R T
Sbjct: 11 FLWANPEP-KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNXARNTTII 69
Query: 183 KSNYVADLGAMV 194
+SNY+ D A +
Sbjct: 70 RSNYLWDESAGI 81
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHM-EQFGI-EVVVLEARERVGG---RIVTFK 182
F P P KKS I++G G GLA A + + GI V VLE GG R T
Sbjct: 11 FLWANPEP-KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTII 69
Query: 183 KSNYVADLGAMV 194
+SNY+ D A +
Sbjct: 70 RSNYLWDESAGI 81
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
+VIG G++GL AA +Q G+ +VL ++ K+S+ A G M
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLS--------LIPVKRSHSAAAQGGM 51
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
+VIG G++GL AA +Q G+ +VL ++ K+S+ A G M
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLS--------LIPVKRSHSAAAQGGM 51
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
+VIG G++GL AA +Q G+ +VL ++ K+S+ A G M
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIVLS--------LIPVKRSHSAAAQGGM 51
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
FQ PI V VIG+G G AA Q G + V +E E +GG
Sbjct: 20 FQADQPI----DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 64
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 LHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTG 400
L E N A +++S + L +F L ANA PL+ L LK D + D+E G
Sbjct: 641 LSPFEGNEAAWMFVSADRSEALVAYFRVLAEANA-PLSYLRLKGLDSNQDYEIEG 694
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 430 EIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLG 466
E Y GV +VDP + QN V TGD V C G
Sbjct: 203 EQGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQG 239
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 LHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTG 400
L E N A +++S + L +F L ANA PL+ L LK D + D+E G
Sbjct: 641 LSPFEGNEAAWMFVSADRSEALVAYFRVLAEANA-PLSYLRLKGLDSNQDYEIEG 694
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 LHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTG 400
L E N A +++S + L +F L ANA PL+ L LK D + D+E G
Sbjct: 641 LSPFEGNEAAWMFVSADRSEALVAYFRVLAEANA-PLSYLRLKGLDSNQDYEIEG 694
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 LHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTG 400
L E N A +++S + L +F L ANA PL+ L LK D + D+E G
Sbjct: 641 LSPFEGNEAAWMFVSADRSEALVAYFRVLAEANA-PLSYLRLKGLDSNQDYEIEG 694
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 430 EIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLG 466
E Y GV +VDP + QN V TGD V C G
Sbjct: 203 EQGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQG 239
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
GK+ VIGAG+ GL + G EV VLEA ++
Sbjct: 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 214
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
+ VIV+GAG +GL A + G++V+VLE
Sbjct: 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLE 42
>pdb|1X13|A Chain A, Crystal Structure Of E. Coli Transhydrogenase Domain I
pdb|1X13|B Chain B, Crystal Structure Of E. Coli Transhydrogenase Domain I
pdb|1X14|A Chain A, Crystal Structure Of E. Coli Transhydrogenase Domain I
With Bound Nad
pdb|1X14|B Chain B, Crystal Structure Of E. Coli Transhydrogenase Domain I
With Bound Nad
pdb|1X15|A Chain A, Crystal Structure Of E. Coli Transhydrogenase Domain I
With Bound Nadh
pdb|1X15|B Chain B, Crystal Structure Of E. Coli Transhydrogenase Domain I
With Bound Nadh
pdb|2BRU|A Chain A, Complex Of The Domain I And Domain Iii Of Escherichia Coli
Transhydrogenase
pdb|2BRU|B Chain B, Complex Of The Domain I And Domain Iii Of Escherichia Coli
Transhydrogenase
Length = 401
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 62 NNPIHSHKTFLHIRNRILQ-MW-LENPKVQLTLE----FVMQKIESPFNSEVQLVSRLHC 115
N P+ L+ ++ +W +NP++ L VM P S Q + L
Sbjct: 80 NAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSS 139
Query: 116 YLERHGYI-------NFGIF--QRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVV 166
GY FG F +IT KV+VIGAG++GLAA G V
Sbjct: 140 MANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVR 199
Query: 167 VLEARERV 174
+ R V
Sbjct: 200 AFDTRPEV 207
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V VIG+G G AA Q G + V +E E +GG
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 43
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V VIG+G G AA Q G + V +E E +GG
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 43
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
G+ R + + + V +IG G GL A+ ++Q GI+V V E RI
Sbjct: 13 GLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARI 65
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
G+ R + + + V +IG G GL A+ ++Q GI+V V E RI
Sbjct: 13 GLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARI 65
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
G+ R + + + V +IG G GL A+ ++Q GI+V V E RI
Sbjct: 13 GLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARI 65
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 26/39 (66%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+P+ ++ ++V+G G + + A H+ ++G +V++L R+
Sbjct: 147 VPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 138 KSGKVIVIGAGIS---GLAAARHMEQFGIEV--------------VVLEARERVGGRIVT 180
K +V VIGAG++ LAAA +++ I + ++L++ GRI+T
Sbjct: 497 KDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILT 556
Query: 181 FKKSNYVADLGAMVVTGLGGNP 202
+ Y +G V + + G P
Sbjct: 557 VEDHYYEGGIGEAVSSAVVGEP 578
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 LHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTG 400
L E N A +++S + L +F L ANA PL+ L LK D + D+E G
Sbjct: 641 LSPFEGNEAAWMFVSADRSEALVAYFRVLAEANA-PLSYLRLKGLDPNQDYEIEG 694
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR--ERVGGRI 178
+V +IGAG SGL + + + GI+ V+LE R + V GRI
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERRTPDYVLGRI 43
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 138 KSGKVIVIGAGIS---GLAAARHMEQFGIEV--------------VVLEARERVGGRIVT 180
K +V VIGAG++ LAAA +++ I + ++L++ GRI+T
Sbjct: 495 KDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILT 554
Query: 181 FKKSNYVADLGAMVVTGLGGNP 202
+ Y +G V + + G P
Sbjct: 555 VEDHYYEGGIGEAVSSAVVGEP 576
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE----RVGGRIVTFKKSNYVADLGAMVVT 196
+++++G G+ G A + G+ V +LEA + RV GR + + +LG V
Sbjct: 145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVEL 204
Query: 197 GLG 199
G G
Sbjct: 205 GTG 207
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
+P + V+VIGAG +G AAR G V VL+
Sbjct: 163 VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
+P + V+VIGAG +G AAR G V VL+
Sbjct: 163 VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
+P + V+VIGAG +G AAR G V VL+
Sbjct: 163 VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
K +++GAG +G A + G V++++ R +GG
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,310,200
Number of Sequences: 62578
Number of extensions: 873553
Number of successful extensions: 2433
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2137
Number of HSP's gapped (non-prelim): 257
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)