Query psy6038
Match_columns 661
No_of_seqs 501 out of 3088
Neff 8.7
Searched_HMMs 46136
Date Sat Aug 17 00:55:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03000 amine oxidase 100.0 1.6E-81 3.4E-86 705.6 45.6 517 36-652 83-626 (881)
2 PLN02328 lysine-specific histo 100.0 1.3E-78 2.8E-83 684.1 45.6 522 37-655 135-685 (808)
3 PLN02529 lysine-specific histo 100.0 3E-76 6.6E-81 663.1 46.4 541 3-650 32-599 (738)
4 PLN02976 amine oxidase 100.0 4.9E-68 1.1E-72 606.8 44.9 562 36-654 447-1192(1713)
5 KOG0029|consensus 100.0 5.3E-63 1.1E-67 537.3 34.1 432 135-651 11-461 (501)
6 KOG0685|consensus 100.0 4.7E-59 1E-63 479.2 30.7 427 137-651 19-493 (498)
7 PLN02568 polyamine oxidase 100.0 8.3E-56 1.8E-60 489.9 40.6 453 138-650 4-536 (539)
8 PLN02268 probable polyamine ox 100.0 2.2E-54 4.8E-59 474.4 39.0 417 140-650 1-435 (435)
9 PLN02676 polyamine oxidase 100.0 5.6E-53 1.2E-57 464.6 38.6 413 136-650 23-474 (487)
10 COG1231 Monoamine oxidase [Ami 100.0 2.7E-47 5.9E-52 393.7 27.3 421 137-651 5-449 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 5.6E-37 1.2E-41 335.6 25.1 224 405-646 207-450 (450)
12 PRK12416 protoporphyrinogen ox 100.0 3.1E-32 6.8E-37 301.3 31.8 423 140-650 2-462 (463)
13 TIGR00562 proto_IX_ox protopor 100.0 4.2E-32 9.1E-37 300.5 31.5 421 139-649 2-460 (462)
14 PRK11883 protoporphyrinogen ox 100.0 2E-31 4.4E-36 294.3 30.1 421 140-647 1-450 (451)
15 PLN02576 protoporphyrinogen ox 100.0 1.2E-30 2.5E-35 291.4 33.3 432 137-651 10-489 (496)
16 TIGR02731 phytoene_desat phyto 100.0 1E-29 2.3E-34 280.4 31.0 212 410-646 213-453 (453)
17 PLN02612 phytoene desaturase 100.0 4.7E-29 1E-33 279.9 35.7 443 109-649 67-548 (567)
18 PRK07233 hypothetical protein; 100.0 2E-28 4.3E-33 269.0 29.6 407 141-651 1-433 (434)
19 TIGR03467 HpnE squalene-associ 100.0 8.2E-27 1.8E-31 254.9 30.0 208 402-646 188-418 (419)
20 PRK07208 hypothetical protein; 99.9 7E-26 1.5E-30 251.8 30.2 419 138-649 3-461 (479)
21 PLN02487 zeta-carotene desatur 99.9 2.4E-23 5.3E-28 231.1 37.0 456 111-650 46-554 (569)
22 TIGR02733 desat_CrtD C-3',4' d 99.9 1.8E-23 3.9E-28 233.1 33.1 313 140-509 2-330 (492)
23 COG1232 HemY Protoporphyrinoge 99.9 2.1E-23 4.5E-28 222.3 30.2 415 140-646 1-443 (444)
24 TIGR02732 zeta_caro_desat caro 99.9 1.1E-22 2.3E-27 224.4 30.3 74 141-215 1-75 (474)
25 COG3380 Predicted NAD/FAD-depe 99.9 2.3E-23 5E-28 200.1 17.2 211 403-649 101-331 (331)
26 TIGR02734 crtI_fam phytoene de 99.9 5.9E-22 1.3E-26 221.5 26.5 70 142-213 1-70 (502)
27 TIGR02730 carot_isom carotene 99.9 1E-19 2.2E-24 202.7 31.6 310 140-510 1-324 (493)
28 KOG1276|consensus 99.8 9.6E-18 2.1E-22 171.3 22.7 424 137-646 9-490 (491)
29 COG2907 Predicted NAD/FAD-bind 99.8 3.4E-18 7.4E-23 169.8 17.4 292 137-508 6-305 (447)
30 COG1233 Phytoene dehydrogenase 99.8 4.4E-18 9.5E-23 188.3 16.3 71 138-211 2-72 (487)
31 COG3349 Uncharacterized conser 99.7 7.2E-17 1.6E-21 171.4 19.2 75 140-215 1-76 (485)
32 KOG0399|consensus 99.5 1.7E-14 3.6E-19 160.2 8.1 172 73-259 1717-1904(2142)
33 PF13450 NAD_binding_8: NAD(P) 99.5 5.3E-14 1.2E-18 111.4 5.1 67 144-210 1-68 (68)
34 PRK12779 putative bifunctional 99.5 3.6E-14 7.9E-19 166.9 5.6 158 73-237 231-411 (944)
35 PTZ00363 rab-GDP dissociation 99.4 1E-11 2.2E-16 134.8 18.7 46 138-183 3-48 (443)
36 COG0493 GltD NADPH-dependent g 99.4 6.9E-13 1.5E-17 143.5 7.9 171 73-258 53-241 (457)
37 KOG4254|consensus 99.3 7.1E-11 1.5E-15 121.9 19.6 88 398-502 252-349 (561)
38 TIGR03315 Se_ygfK putative sel 99.3 8.6E-13 1.9E-17 153.9 6.2 148 74-230 469-632 (1012)
39 TIGR00031 UDP-GALP_mutase UDP- 99.3 5.2E-12 1.1E-16 133.9 11.0 60 140-199 2-62 (377)
40 PRK12775 putative trifunctiona 99.3 1.2E-12 2.5E-17 155.7 6.1 155 73-237 362-536 (1006)
41 PRK12831 putative oxidoreducta 99.3 6.3E-12 1.4E-16 138.5 8.9 104 73-179 71-180 (464)
42 PRK06567 putative bifunctional 99.3 9.3E-12 2E-16 142.7 10.1 101 75-176 303-420 (1028)
43 PRK09853 putative selenate red 99.2 1.1E-11 2.4E-16 144.0 7.7 105 74-179 471-579 (1019)
44 PRK13977 myosin-cross-reactive 99.2 3.5E-10 7.6E-15 124.1 17.9 73 136-210 19-97 (576)
45 PRK12778 putative bifunctional 99.2 1.2E-10 2.5E-15 136.3 12.2 148 73-229 360-527 (752)
46 PRK12769 putative oxidoreducta 99.2 5.5E-11 1.2E-15 136.9 9.1 105 73-179 257-367 (654)
47 PRK12810 gltD glutamate syntha 99.2 5.6E-11 1.2E-15 131.6 8.6 105 73-179 75-183 (471)
48 PRK12809 putative oxidoreducta 99.1 8.4E-11 1.8E-15 134.8 9.3 105 73-179 240-350 (639)
49 TIGR01318 gltD_gamma_fam gluta 99.1 9.4E-11 2E-15 129.4 9.0 105 73-179 71-181 (467)
50 PF04433 SWIRM: SWIRM domain; 99.1 5.9E-11 1.3E-15 98.8 4.8 83 38-125 4-86 (86)
51 TIGR01316 gltA glutamate synth 99.1 1.9E-10 4.1E-15 126.5 8.8 105 73-179 59-173 (449)
52 COG2081 Predicted flavoprotein 99.1 7.7E-10 1.7E-14 114.2 11.9 56 403-464 104-164 (408)
53 PRK12814 putative NADPH-depend 99.0 4.9E-10 1.1E-14 128.6 8.3 105 73-179 125-233 (652)
54 TIGR01317 GOGAT_sm_gam glutama 99.0 1.1E-09 2.5E-14 121.4 10.3 105 73-179 75-183 (485)
55 COG1635 THI4 Ribulose 1,5-bisp 99.0 5.1E-10 1.1E-14 105.6 5.6 70 138-217 29-99 (262)
56 PRK12771 putative glutamate sy 98.9 2.3E-09 5E-14 121.5 9.3 104 73-179 70-177 (564)
57 PF03486 HI0933_like: HI0933-l 98.9 1.1E-08 2.5E-13 110.0 13.2 40 140-179 1-40 (409)
58 PRK11749 dihydropyrimidine deh 98.9 3.8E-09 8.3E-14 116.7 9.7 103 73-179 71-180 (457)
59 PRK10015 oxidoreductase; Provi 98.9 4.2E-07 9.1E-12 99.5 23.6 39 138-176 4-42 (429)
60 PRK13984 putative oxidoreducta 98.9 4.4E-09 9.5E-14 120.4 8.1 104 75-179 216-323 (604)
61 PF01266 DAO: FAD dependent ox 98.8 6.8E-08 1.5E-12 102.8 14.3 52 409-467 146-203 (358)
62 PF01946 Thi4: Thi4 family; PD 98.8 3E-09 6.5E-14 101.4 3.2 70 138-216 16-85 (230)
63 COG0579 Predicted dehydrogenas 98.8 9.1E-08 2E-12 102.2 14.5 43 138-180 2-46 (429)
64 TIGR02032 GG-red-SF geranylger 98.7 1.1E-06 2.4E-11 90.9 20.7 37 140-176 1-37 (295)
65 PRK10157 putative oxidoreducta 98.6 3.5E-07 7.6E-12 100.2 13.4 40 138-177 4-43 (428)
66 PRK07588 hypothetical protein; 98.6 4.5E-07 9.8E-12 98.3 12.9 48 412-465 109-156 (391)
67 TIGR01377 soxA_mon sarcosine o 98.5 1.7E-06 3.7E-11 93.3 16.5 37 140-176 1-37 (380)
68 PRK12409 D-amino acid dehydrog 98.5 4.9E-06 1.1E-10 90.8 19.9 37 140-176 2-38 (410)
69 PRK07236 hypothetical protein; 98.5 1E-06 2.3E-11 95.3 14.1 36 138-173 5-40 (386)
70 PRK11728 hydroxyglutarate oxid 98.5 2E-06 4.3E-11 93.3 16.2 40 139-178 2-43 (393)
71 PRK05868 hypothetical protein; 98.5 1.2E-06 2.6E-11 94.2 13.6 35 140-174 2-36 (372)
72 TIGR03329 Phn_aa_oxid putative 98.5 2.7E-06 5.8E-11 94.2 16.0 38 136-173 21-60 (460)
73 PRK06753 hypothetical protein; 98.5 2.3E-06 4.9E-11 92.2 14.2 36 140-175 1-36 (373)
74 PRK06847 hypothetical protein; 98.4 3.2E-06 7E-11 91.0 15.0 37 138-174 3-39 (375)
75 TIGR03219 salicylate_mono sali 98.4 1.6E-06 3.6E-11 94.7 12.6 36 140-175 1-37 (414)
76 TIGR00275 flavoprotein, HI0933 98.4 3.4E-06 7.4E-11 91.5 14.9 37 143-179 1-37 (400)
77 PRK08013 oxidoreductase; Provi 98.4 3.1E-06 6.6E-11 92.1 14.0 36 139-174 3-38 (400)
78 COG1148 HdrA Heterodisulfide r 98.4 1.7E-07 3.7E-12 98.1 3.5 52 130-181 115-166 (622)
79 PRK06184 hypothetical protein; 98.4 3.9E-06 8.3E-11 94.1 14.5 36 139-174 3-38 (502)
80 COG0654 UbiH 2-polyprenyl-6-me 98.4 2.3E-06 4.9E-11 92.6 12.1 33 139-171 2-34 (387)
81 PLN02172 flavin-containing mon 98.4 3.7E-07 8.1E-12 100.4 6.0 43 137-179 8-50 (461)
82 COG0562 Glf UDP-galactopyranos 98.4 6.8E-07 1.5E-11 89.5 6.9 61 140-200 2-65 (374)
83 PRK00711 D-amino acid dehydrog 98.4 3.8E-06 8.2E-11 91.9 13.6 36 141-176 2-37 (416)
84 PRK11259 solA N-methyltryptoph 98.3 1.4E-05 3E-10 86.2 16.5 38 139-176 3-40 (376)
85 PRK07333 2-octaprenyl-6-methox 98.3 4.9E-06 1.1E-10 90.6 12.9 34 140-173 2-37 (403)
86 PRK04176 ribulose-1,5-biphosph 98.3 1E-06 2.2E-11 89.4 6.7 41 138-178 24-64 (257)
87 TIGR00292 thiazole biosynthesi 98.3 1.1E-06 2.3E-11 88.9 6.6 41 138-178 20-60 (254)
88 PRK01747 mnmC bifunctional tRN 98.3 1.2E-05 2.6E-10 93.2 16.0 38 139-176 260-297 (662)
89 PTZ00383 malate:quinone oxidor 98.3 2.1E-05 4.6E-10 87.1 17.2 40 137-176 43-84 (497)
90 TIGR01373 soxB sarcosine oxida 98.3 2.7E-05 5.9E-10 84.9 18.0 51 126-176 17-69 (407)
91 PF05834 Lycopene_cycl: Lycope 98.3 0.00017 3.7E-09 77.6 23.7 34 141-174 1-36 (374)
92 PLN02852 ferredoxin-NADP+ redu 98.3 1E-06 2.3E-11 96.8 6.2 46 135-180 22-69 (491)
93 COG0644 FixC Dehydrogenases (f 98.3 8E-07 1.7E-11 96.4 5.3 43 138-180 2-44 (396)
94 PRK06834 hypothetical protein; 98.3 1.3E-05 2.7E-10 89.3 14.5 36 139-174 3-38 (488)
95 PRK09897 hypothetical protein; 98.3 1.8E-05 4E-10 88.1 15.6 41 140-180 2-45 (534)
96 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.1E-05 2.4E-10 91.2 14.3 39 137-175 8-46 (538)
97 KOG1399|consensus 98.2 1.2E-06 2.7E-11 94.8 5.4 42 138-179 5-46 (448)
98 PLN02661 Putative thiazole syn 98.2 3E-06 6.6E-11 88.2 7.3 43 137-179 90-133 (357)
99 PRK13339 malate:quinone oxidor 98.2 5.1E-05 1.1E-09 83.8 17.2 41 137-177 4-46 (497)
100 COG2072 TrkA Predicted flavopr 98.2 2.2E-06 4.7E-11 94.0 6.4 55 136-190 5-60 (443)
101 PF00743 FMO-like: Flavin-bind 98.1 1.8E-06 3.9E-11 96.3 4.9 41 139-179 1-41 (531)
102 PTZ00188 adrenodoxin reductase 98.1 2.8E-06 6E-11 92.1 6.0 44 137-180 37-81 (506)
103 PF13454 NAD_binding_9: FAD-NA 98.1 2.7E-05 5.8E-10 72.8 11.9 41 418-464 113-154 (156)
104 PF13738 Pyr_redox_3: Pyridine 98.1 2.9E-06 6.3E-11 82.8 4.8 38 143-180 1-39 (203)
105 PF06100 Strep_67kDa_ant: Stre 98.0 0.00024 5.3E-09 76.4 18.1 44 139-182 2-49 (500)
106 PRK05249 soluble pyridine nucl 98.0 4.3E-06 9.4E-11 92.7 5.2 42 138-179 4-45 (461)
107 PRK06115 dihydrolipoamide dehy 98.0 4.6E-06 1E-10 92.5 5.0 41 139-179 3-43 (466)
108 PF01494 FAD_binding_3: FAD bi 98.0 4.6E-06 9.9E-11 88.6 4.2 36 140-175 2-37 (356)
109 TIGR01350 lipoamide_DH dihydro 98.0 6.5E-06 1.4E-10 91.3 5.5 40 140-180 2-41 (461)
110 TIGR01421 gluta_reduc_1 glutat 98.0 6.3E-06 1.4E-10 90.9 5.3 41 138-179 1-41 (450)
111 TIGR01292 TRX_reduct thioredox 98.0 7E-06 1.5E-10 85.3 5.3 40 140-180 1-40 (300)
112 TIGR01424 gluta_reduc_2 glutat 98.0 6.7E-06 1.5E-10 90.7 5.1 40 139-179 2-41 (446)
113 PRK07364 2-octaprenyl-6-methox 98.0 9.4E-06 2E-10 88.7 5.9 38 137-174 16-53 (415)
114 KOG2404|consensus 98.0 0.0001 2.2E-09 74.0 12.4 37 141-177 11-47 (477)
115 PRK07251 pyridine nucleotide-d 98.0 7.9E-06 1.7E-10 90.0 5.3 41 139-179 3-44 (438)
116 PRK06416 dihydrolipoamide dehy 97.9 8.9E-06 1.9E-10 90.3 5.4 42 138-180 3-44 (462)
117 PF12831 FAD_oxidored: FAD dep 97.9 9.5E-06 2.1E-10 88.9 5.3 39 141-179 1-39 (428)
118 PF00996 GDI: GDP dissociation 97.9 0.00069 1.5E-08 73.3 19.2 73 138-212 3-96 (438)
119 PRK10262 thioredoxin reductase 97.9 1.2E-05 2.7E-10 84.6 5.7 43 137-180 4-46 (321)
120 PRK05976 dihydrolipoamide dehy 97.9 1.1E-05 2.4E-10 89.7 5.5 42 138-180 3-44 (472)
121 TIGR03143 AhpF_homolog putativ 97.9 1.2E-05 2.6E-10 91.0 5.7 42 138-180 3-44 (555)
122 PRK06116 glutathione reductase 97.9 9.9E-06 2.1E-10 89.6 4.9 40 139-179 4-43 (450)
123 KOG2820|consensus 97.9 0.00025 5.3E-09 71.9 14.0 39 137-175 5-43 (399)
124 TIGR01988 Ubi-OHases Ubiquinon 97.9 1E-05 2.2E-10 87.4 4.8 35 141-175 1-35 (385)
125 PRK06467 dihydrolipoamide dehy 97.9 1.3E-05 2.8E-10 89.0 5.5 42 138-179 3-44 (471)
126 PLN00093 geranylgeranyl diphos 97.9 1.4E-05 3.1E-10 87.8 5.7 37 136-172 36-72 (450)
127 PRK07045 putative monooxygenas 97.9 1.2E-05 2.5E-10 87.2 4.9 37 138-174 4-40 (388)
128 PRK08010 pyridine nucleotide-d 97.9 1.3E-05 2.9E-10 88.2 5.4 41 139-179 3-44 (441)
129 TIGR02023 BchP-ChlP geranylger 97.9 1.3E-05 2.7E-10 86.9 5.0 32 140-171 1-32 (388)
130 TIGR02028 ChlP geranylgeranyl 97.9 1.4E-05 3E-10 86.7 5.3 36 140-175 1-36 (398)
131 PRK08163 salicylate hydroxylas 97.9 1.3E-05 2.9E-10 86.9 5.1 37 139-175 4-40 (396)
132 PRK08773 2-octaprenyl-3-methyl 97.9 1.5E-05 3.4E-10 86.3 5.5 38 137-174 4-41 (392)
133 PRK14694 putative mercuric red 97.9 1.7E-05 3.7E-10 88.1 5.7 42 137-179 4-45 (468)
134 PLN02985 squalene monooxygenas 97.8 2.3E-05 5.1E-10 87.6 6.7 42 132-173 36-77 (514)
135 TIGR01790 carotene-cycl lycope 97.8 1.5E-05 3.3E-10 86.3 5.1 36 141-176 1-36 (388)
136 PRK07608 ubiquinone biosynthes 97.8 1.8E-05 3.8E-10 85.7 5.2 38 138-175 4-41 (388)
137 COG0578 GlpA Glycerol-3-phosph 97.8 0.00047 1E-08 75.7 16.1 40 138-177 11-50 (532)
138 PRK06370 mercuric reductase; V 97.8 1.9E-05 4.2E-10 87.5 5.4 41 138-179 4-44 (463)
139 PRK06292 dihydrolipoamide dehy 97.8 1.9E-05 4E-10 87.6 5.3 40 139-179 3-42 (460)
140 PRK09126 hypothetical protein; 97.8 1.8E-05 4E-10 85.7 5.1 37 139-175 3-39 (392)
141 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 1.8E-05 3.9E-10 85.7 5.0 35 139-173 2-36 (390)
142 KOG2415|consensus 97.8 1.9E-05 4.1E-10 81.6 4.7 44 137-180 74-123 (621)
143 PRK06475 salicylate hydroxylas 97.8 2E-05 4.4E-10 85.7 5.3 36 139-174 2-37 (400)
144 KOG2614|consensus 97.8 2.2E-05 4.7E-10 81.9 5.0 38 139-176 2-39 (420)
145 TIGR02053 MerA mercuric reduct 97.8 2.2E-05 4.7E-10 87.2 5.3 39 140-179 1-39 (463)
146 PRK05714 2-octaprenyl-3-methyl 97.8 2E-05 4.2E-10 85.9 4.8 35 139-173 2-36 (405)
147 PRK07818 dihydrolipoamide dehy 97.8 2.4E-05 5.2E-10 86.9 5.5 41 139-180 4-44 (466)
148 PRK06481 fumarate reductase fl 97.8 2.8E-05 6E-10 87.1 6.0 41 137-177 59-99 (506)
149 COG0665 DadA Glycine/D-amino a 97.8 2.4E-05 5.2E-10 84.6 5.4 39 138-176 3-41 (387)
150 PF00890 FAD_binding_2: FAD bi 97.8 2.1E-05 4.5E-10 86.1 4.6 36 141-176 1-36 (417)
151 TIGR01372 soxA sarcosine oxida 97.8 2.7E-05 5.8E-10 93.9 5.9 43 138-180 162-204 (985)
152 PRK08849 2-octaprenyl-3-methyl 97.8 2.6E-05 5.6E-10 84.4 5.1 34 139-172 3-36 (384)
153 TIGR01984 UbiH 2-polyprenyl-6- 97.8 2.1E-05 4.7E-10 84.9 4.5 34 141-174 1-35 (382)
154 PRK07538 hypothetical protein; 97.8 2.5E-05 5.4E-10 85.4 5.0 35 140-174 1-35 (413)
155 PTZ00058 glutathione reductase 97.8 3.5E-05 7.7E-10 86.7 6.2 44 136-180 45-88 (561)
156 PRK07494 2-octaprenyl-6-methox 97.8 2.8E-05 6.1E-10 84.2 5.3 37 138-174 6-42 (388)
157 PRK08243 4-hydroxybenzoate 3-m 97.7 2.7E-05 5.9E-10 84.4 5.0 35 139-173 2-36 (392)
158 COG0492 TrxB Thioredoxin reduc 97.7 2.8E-05 6E-10 80.5 4.8 42 138-179 2-43 (305)
159 TIGR01813 flavo_cyto_c flavocy 97.7 2.9E-05 6.2E-10 85.6 5.2 37 141-177 1-38 (439)
160 PRK14727 putative mercuric red 97.7 3.2E-05 6.8E-10 86.2 5.2 43 138-180 15-57 (479)
161 TIGR03364 HpnW_proposed FAD de 97.7 3.5E-05 7.7E-10 82.6 5.4 37 140-176 1-37 (365)
162 PRK13748 putative mercuric red 97.7 3.2E-05 7E-10 88.0 5.1 41 138-179 97-137 (561)
163 PRK07121 hypothetical protein; 97.7 3.7E-05 8.1E-10 85.9 5.5 41 138-178 19-59 (492)
164 PRK08244 hypothetical protein; 97.7 3.7E-05 8E-10 86.1 5.3 36 139-174 2-37 (493)
165 PRK05335 tRNA (uracil-5-)-meth 97.7 4.1E-05 8.9E-10 81.9 5.2 38 139-176 2-39 (436)
166 PRK08274 tricarballylate dehyd 97.7 4E-05 8.7E-10 85.1 5.5 40 138-177 3-44 (466)
167 PRK15317 alkyl hydroperoxide r 97.7 4.3E-05 9.4E-10 85.9 5.7 41 137-179 209-249 (517)
168 TIGR02485 CobZ_N-term precorri 97.7 0.00042 9.1E-09 76.2 13.3 33 144-176 1-35 (432)
169 PRK12266 glpD glycerol-3-phosp 97.7 4.7E-05 1E-09 85.3 5.9 40 138-177 5-44 (508)
170 PRK13369 glycerol-3-phosphate 97.7 4.8E-05 1E-09 85.2 5.9 40 137-176 4-43 (502)
171 PRK08020 ubiF 2-octaprenyl-3-m 97.7 3.7E-05 8E-10 83.3 4.7 36 138-173 4-39 (391)
172 PRK06185 hypothetical protein; 97.7 4.6E-05 1E-09 83.1 5.5 36 138-173 5-40 (407)
173 TIGR03140 AhpF alkyl hydropero 97.7 4.7E-05 1E-09 85.5 5.6 41 137-179 210-250 (515)
174 PLN02463 lycopene beta cyclase 97.7 5.3E-05 1.1E-09 83.0 5.7 38 136-173 25-62 (447)
175 PRK12770 putative glutamate sy 97.7 6.1E-05 1.3E-09 80.4 6.1 43 137-179 16-58 (352)
176 PRK05732 2-octaprenyl-6-methox 97.7 4E-05 8.6E-10 83.1 4.7 35 138-172 2-39 (395)
177 PRK08132 FAD-dependent oxidore 97.7 5.4E-05 1.2E-09 85.9 5.9 38 137-174 21-58 (547)
178 PRK06327 dihydrolipoamide dehy 97.7 4.7E-05 1E-09 84.7 5.3 41 139-179 4-50 (475)
179 PTZ00052 thioredoxin reductase 97.7 4.5E-05 9.7E-10 85.2 5.1 41 139-179 5-53 (499)
180 KOG2960|consensus 97.6 2.6E-05 5.6E-10 73.5 2.4 92 105-215 51-145 (328)
181 PRK07190 hypothetical protein; 97.6 5.4E-05 1.2E-09 84.2 5.2 36 139-174 5-40 (487)
182 PRK06126 hypothetical protein; 97.6 6.2E-05 1.3E-09 85.4 5.7 36 138-173 6-41 (545)
183 PRK11445 putative oxidoreducta 97.6 5.2E-05 1.1E-09 81.0 4.8 35 140-175 2-36 (351)
184 PRK06617 2-octaprenyl-6-methox 97.6 5E-05 1.1E-09 81.8 4.7 34 140-173 2-35 (374)
185 PLN02927 antheraxanthin epoxid 97.6 5.2E-05 1.1E-09 86.1 5.0 36 137-172 79-114 (668)
186 PRK12842 putative succinate de 97.6 6.9E-05 1.5E-09 85.3 5.9 42 138-179 8-49 (574)
187 PLN02507 glutathione reductase 97.6 6.6E-05 1.4E-09 83.8 5.6 43 137-179 23-74 (499)
188 PRK08850 2-octaprenyl-6-methox 97.6 5.7E-05 1.2E-09 82.3 4.8 33 139-171 4-36 (405)
189 PRK12837 3-ketosteroid-delta-1 97.6 6.5E-05 1.4E-09 84.3 5.3 40 138-178 6-45 (513)
190 PRK12834 putative FAD-binding 97.6 7.3E-05 1.6E-09 84.7 5.6 41 138-178 3-45 (549)
191 PTZ00367 squalene epoxidase; P 97.6 7.6E-05 1.6E-09 84.1 5.6 37 136-172 30-66 (567)
192 PRK05192 tRNA uridine 5-carbox 97.6 7E-05 1.5E-09 83.8 5.2 40 138-177 3-43 (618)
193 COG1249 Lpd Pyruvate/2-oxoglut 97.6 8.2E-05 1.8E-09 81.1 5.4 43 138-180 3-45 (454)
194 PRK11101 glpA sn-glycerol-3-ph 97.6 8.4E-05 1.8E-09 84.0 5.6 39 138-176 5-43 (546)
195 TIGR01789 lycopene_cycl lycope 97.6 7.7E-05 1.7E-09 80.1 5.0 36 141-176 1-38 (370)
196 TIGR01989 COQ6 Ubiquinone bios 97.6 6.9E-05 1.5E-09 82.5 4.7 34 140-173 1-38 (437)
197 TIGR00137 gid_trmFO tRNA:m(5)U 97.5 7.6E-05 1.7E-09 80.4 4.8 36 141-176 2-37 (433)
198 TIGR01423 trypano_reduc trypan 97.5 8.8E-05 1.9E-09 82.4 5.3 43 138-180 2-53 (486)
199 PRK12839 hypothetical protein; 97.5 0.0001 2.2E-09 83.5 5.9 44 136-179 5-48 (572)
200 PF07992 Pyr_redox_2: Pyridine 97.5 9.7E-05 2.1E-09 71.8 5.0 33 141-173 1-33 (201)
201 PRK12835 3-ketosteroid-delta-1 97.5 9.4E-05 2E-09 84.1 5.4 40 138-177 10-49 (584)
202 PF06039 Mqo: Malate:quinone o 97.5 0.0033 7.3E-08 67.2 16.1 40 138-177 2-43 (488)
203 PRK12844 3-ketosteroid-delta-1 97.5 0.00012 2.5E-09 83.0 5.6 41 138-178 5-45 (557)
204 PLN02546 glutathione reductase 97.5 0.00011 2.4E-09 82.8 5.3 43 137-179 77-128 (558)
205 TIGR01320 mal_quin_oxido malat 97.5 0.0001 2.2E-09 81.7 4.7 37 140-176 1-39 (483)
206 PF00070 Pyr_redox: Pyridine n 97.5 0.0002 4.4E-09 58.6 5.2 35 141-175 1-35 (80)
207 PRK08641 sdhA succinate dehydr 97.5 0.00012 2.6E-09 83.4 5.2 38 139-176 3-40 (589)
208 PLN02464 glycerol-3-phosphate 97.5 0.00014 3E-09 83.4 5.6 39 138-176 70-108 (627)
209 PRK08294 phenol 2-monooxygenas 97.4 0.00014 3.1E-09 83.4 5.1 37 137-173 30-67 (634)
210 KOG1800|consensus 97.4 0.00018 4E-09 73.8 5.2 46 137-182 18-65 (468)
211 PLN02697 lycopene epsilon cycl 97.4 0.00022 4.7E-09 79.6 6.3 35 137-171 106-140 (529)
212 PRK07804 L-aspartate oxidase; 97.4 0.00015 3.3E-09 81.8 5.1 40 137-176 14-53 (541)
213 PRK07843 3-ketosteroid-delta-1 97.4 0.00017 3.8E-09 81.6 5.6 41 138-178 6-46 (557)
214 PRK07573 sdhA succinate dehydr 97.4 0.00018 3.9E-09 82.6 5.7 39 138-176 34-72 (640)
215 PRK06134 putative FAD-binding 97.4 0.00021 4.6E-09 81.3 6.3 43 137-179 10-52 (581)
216 PF07156 Prenylcys_lyase: Pren 97.4 0.0027 5.9E-08 67.5 14.2 211 399-652 117-351 (368)
217 PRK07803 sdhA succinate dehydr 97.4 0.00015 3.3E-09 83.1 5.0 39 138-176 7-45 (626)
218 PRK06912 acoL dihydrolipoamide 97.4 0.00016 3.4E-09 80.2 5.0 38 141-179 2-39 (458)
219 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.00017 3.7E-09 82.1 5.0 37 141-177 1-37 (566)
220 PRK12845 3-ketosteroid-delta-1 97.4 0.0002 4.4E-09 81.0 5.5 42 137-179 14-55 (564)
221 TIGR02462 pyranose_ox pyranose 97.4 0.0002 4.2E-09 79.9 5.0 37 140-176 1-37 (544)
222 PRK05257 malate:quinone oxidor 97.4 0.00018 3.9E-09 80.0 4.8 41 138-178 4-46 (494)
223 PRK06452 sdhA succinate dehydr 97.3 0.00021 4.5E-09 81.1 5.3 39 138-176 4-42 (566)
224 PTZ00153 lipoamide dehydrogena 97.3 0.00022 4.8E-09 81.5 5.3 42 138-179 115-157 (659)
225 PRK08958 sdhA succinate dehydr 97.3 0.00024 5.1E-09 81.0 5.4 38 139-176 7-44 (588)
226 PRK07845 flavoprotein disulfid 97.3 0.00023 4.9E-09 79.0 5.1 39 140-179 2-40 (466)
227 PRK07057 sdhA succinate dehydr 97.3 0.00023 5E-09 81.1 5.3 40 138-177 11-50 (591)
228 PLN00128 Succinate dehydrogena 97.3 0.00023 5E-09 81.6 5.1 39 138-176 49-87 (635)
229 PRK06175 L-aspartate oxidase; 97.3 0.00022 4.8E-09 78.2 4.8 37 139-176 4-40 (433)
230 PRK12843 putative FAD-binding 97.3 0.00036 7.7E-09 79.5 6.5 43 137-179 14-56 (578)
231 PRK08401 L-aspartate oxidase; 97.3 0.00025 5.4E-09 78.7 5.1 33 140-172 2-34 (466)
232 PTZ00139 Succinate dehydrogena 97.3 0.00024 5.3E-09 81.3 5.1 39 138-176 28-66 (617)
233 PLN02815 L-aspartate oxidase 97.3 0.00028 6.1E-09 80.1 5.3 39 137-176 27-65 (594)
234 PRK09078 sdhA succinate dehydr 97.3 0.00027 5.8E-09 80.8 5.1 39 138-176 11-49 (598)
235 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00027 5.8E-09 83.1 4.9 34 140-173 1-36 (765)
236 PRK06996 hypothetical protein; 97.2 0.00033 7.2E-09 76.1 5.2 38 136-173 8-49 (398)
237 PRK07395 L-aspartate oxidase; 97.2 0.00029 6.2E-09 79.6 4.9 40 137-177 7-46 (553)
238 PF00732 GMC_oxred_N: GMC oxid 97.2 0.00024 5.2E-09 73.8 3.9 37 140-176 1-38 (296)
239 TIGR01438 TGR thioredoxin and 97.2 0.00033 7.2E-09 78.0 5.2 40 139-178 2-49 (484)
240 TIGR00551 nadB L-aspartate oxi 97.2 0.00033 7.3E-09 78.2 5.2 38 139-177 2-39 (488)
241 PRK14989 nitrite reductase sub 97.2 0.0027 5.8E-08 75.1 12.8 37 139-175 3-43 (847)
242 PRK05945 sdhA succinate dehydr 97.2 0.00031 6.6E-09 80.0 4.8 38 139-176 3-42 (575)
243 PRK08626 fumarate reductase fl 97.2 0.00033 7.1E-09 80.7 5.0 39 138-176 4-42 (657)
244 PF01134 GIDA: Glucose inhibit 97.2 0.00031 6.8E-09 74.5 4.4 37 141-177 1-38 (392)
245 PRK06069 sdhA succinate dehydr 97.2 0.00033 7.2E-09 79.8 4.9 39 139-177 5-46 (577)
246 PTZ00306 NADH-dependent fumara 97.2 0.00042 9E-09 85.0 5.5 41 137-177 407-447 (1167)
247 PRK06854 adenylylsulfate reduc 97.2 0.00037 8E-09 79.7 4.8 37 139-175 11-49 (608)
248 PRK08071 L-aspartate oxidase; 97.1 0.00043 9.3E-09 77.6 4.9 38 139-177 3-40 (510)
249 COG3573 Predicted oxidoreducta 97.1 0.00056 1.2E-08 69.0 5.0 41 138-178 4-46 (552)
250 PRK08275 putative oxidoreducta 97.1 0.00049 1.1E-08 78.1 4.9 39 138-176 8-48 (554)
251 PRK09231 fumarate reductase fl 97.1 0.00048 1E-08 78.4 4.7 38 139-176 4-43 (582)
252 TIGR01811 sdhA_Bsu succinate d 97.1 0.00043 9.4E-09 79.0 4.3 35 142-176 1-35 (603)
253 PRK06263 sdhA succinate dehydr 97.0 0.00056 1.2E-08 77.4 4.8 39 138-177 6-45 (543)
254 TIGR01176 fum_red_Fp fumarate 97.0 0.00056 1.2E-08 77.7 4.7 39 139-177 3-43 (580)
255 KOG1335|consensus 97.0 0.00068 1.5E-08 69.8 4.5 43 138-180 38-80 (506)
256 COG3075 GlpB Anaerobic glycero 97.0 0.00072 1.6E-08 68.3 4.5 33 139-171 2-34 (421)
257 PRK05329 anaerobic glycerol-3- 97.0 0.00074 1.6E-08 73.3 4.9 34 139-172 2-35 (422)
258 TIGR02374 nitri_red_nirB nitri 97.0 0.0047 1E-07 72.9 11.9 34 142-175 1-37 (785)
259 PRK09077 L-aspartate oxidase; 97.0 0.00081 1.7E-08 75.9 5.2 39 138-177 7-45 (536)
260 TIGR02061 aprA adenosine phosp 96.9 0.00081 1.8E-08 76.5 4.9 33 141-173 1-37 (614)
261 COG1053 SdhA Succinate dehydro 96.9 0.0011 2.3E-08 74.5 5.2 41 137-177 4-44 (562)
262 PRK08205 sdhA succinate dehydr 96.9 0.001 2.2E-08 76.0 5.0 37 139-176 5-41 (583)
263 PRK02106 choline dehydrogenase 96.8 0.0012 2.6E-08 75.1 5.2 36 138-173 4-40 (560)
264 PRK09564 coenzyme A disulfide 96.8 0.0012 2.7E-08 72.8 4.6 36 140-175 1-38 (444)
265 COG4716 Myosin-crossreactive a 96.8 0.014 2.9E-07 60.2 11.4 45 135-179 18-66 (587)
266 PRK09754 phenylpropionate diox 96.8 0.0016 3.5E-08 70.7 5.3 37 139-175 3-41 (396)
267 TIGR03452 mycothione_red mycot 96.7 0.0017 3.7E-08 71.7 5.2 39 139-180 2-40 (452)
268 KOG1298|consensus 96.7 0.0016 3.5E-08 67.2 4.3 36 137-172 43-78 (509)
269 KOG2844|consensus 96.7 0.022 4.7E-07 63.0 13.0 36 136-171 36-71 (856)
270 PRK07846 mycothione reductase; 96.7 0.0017 3.8E-08 71.7 4.8 37 140-179 2-38 (451)
271 PRK13512 coenzyme A disulfide 96.6 0.002 4.3E-08 70.9 5.0 36 140-175 2-39 (438)
272 TIGR00136 gidA glucose-inhibit 96.6 0.0021 4.6E-08 72.0 5.1 38 140-177 1-38 (617)
273 PRK07512 L-aspartate oxidase; 96.6 0.0018 3.9E-08 72.7 4.4 37 138-176 8-45 (513)
274 PRK13800 putative oxidoreducta 96.5 0.0024 5.1E-08 76.6 5.1 36 138-173 12-47 (897)
275 COG2509 Uncharacterized FAD-de 96.5 0.039 8.4E-07 58.8 13.3 42 137-178 16-62 (486)
276 KOG2853|consensus 96.5 0.0026 5.6E-08 64.6 4.1 36 138-173 85-124 (509)
277 COG1206 Gid NAD(FAD)-utilizing 96.5 0.0027 5.8E-08 64.3 4.0 38 139-176 3-40 (439)
278 COG0446 HcaD Uncharacterized N 96.4 0.0031 6.8E-08 68.4 4.8 41 139-179 136-176 (415)
279 TIGR03378 glycerol3P_GlpB glyc 96.4 0.0034 7.4E-08 67.5 4.8 33 140-172 1-33 (419)
280 TIGR01810 betA choline dehydro 96.4 0.0026 5.7E-08 71.9 4.0 33 141-173 1-34 (532)
281 KOG2852|consensus 96.4 0.0015 3.2E-08 64.9 1.6 41 137-177 8-54 (380)
282 PF04820 Trp_halogenase: Trypt 96.4 0.003 6.5E-08 69.7 4.1 59 141-216 1-62 (454)
283 PTZ00318 NADH dehydrogenase-li 96.3 0.0041 9E-08 68.1 5.0 38 137-174 8-45 (424)
284 PF13434 K_oxygenase: L-lysine 96.1 0.041 8.8E-07 58.3 10.8 35 140-174 3-38 (341)
285 COG2303 BetA Choline dehydroge 96.0 0.0065 1.4E-07 68.5 4.7 36 137-172 5-40 (542)
286 PRK04965 NADH:flavorubredoxin 95.7 0.012 2.6E-07 63.4 5.1 47 412-464 189-236 (377)
287 PLN02785 Protein HOTHEAD 95.7 0.013 2.7E-07 66.7 5.2 36 137-173 53-88 (587)
288 KOG1439|consensus 95.6 0.071 1.5E-06 55.8 9.7 44 139-182 4-47 (440)
289 KOG2665|consensus 95.5 0.0096 2.1E-07 60.0 3.0 41 136-176 45-87 (453)
290 COG0029 NadB Aspartate oxidase 95.5 0.01 2.2E-07 63.8 3.3 34 141-175 9-42 (518)
291 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.017 3.6E-07 54.0 4.4 32 141-172 1-32 (157)
292 TIGR03169 Nterm_to_SelD pyridi 95.5 0.014 3E-07 62.6 4.4 33 141-173 1-36 (364)
293 PRK01438 murD UDP-N-acetylmura 95.4 0.017 3.7E-07 64.5 5.1 36 138-173 15-50 (480)
294 COG4529 Uncharacterized protei 95.4 0.019 4.1E-07 61.8 5.0 39 140-178 2-43 (474)
295 PRK02705 murD UDP-N-acetylmura 95.3 0.018 3.9E-07 63.9 4.8 34 141-174 2-35 (459)
296 PRK09754 phenylpropionate diox 95.2 0.022 4.8E-07 61.8 5.0 38 139-176 144-181 (396)
297 KOG4716|consensus 95.2 0.02 4.3E-07 58.3 4.0 37 135-171 15-51 (503)
298 COG1252 Ndh NADH dehydrogenase 95.0 0.028 6.1E-07 60.1 5.0 37 138-174 2-40 (405)
299 KOG1279|consensus 95.0 0.033 7.1E-07 60.8 5.2 109 41-153 53-165 (506)
300 PRK07251 pyridine nucleotide-d 94.9 0.034 7.4E-07 61.3 5.5 39 139-177 157-195 (438)
301 COG3634 AhpF Alkyl hydroperoxi 94.9 0.017 3.6E-07 59.1 2.5 42 136-179 208-249 (520)
302 KOG0405|consensus 94.8 0.046 1E-06 56.0 5.2 45 136-180 17-61 (478)
303 PRK04965 NADH:flavorubredoxin 94.7 0.04 8.6E-07 59.4 5.2 38 139-176 141-178 (377)
304 PF02737 3HCDH_N: 3-hydroxyacy 94.5 0.043 9.3E-07 52.5 4.2 33 141-173 1-33 (180)
305 KOG0404|consensus 94.4 0.035 7.7E-07 53.3 3.4 42 139-180 8-53 (322)
306 PRK05976 dihydrolipoamide dehy 94.4 0.045 9.8E-07 60.9 4.9 38 139-176 180-217 (472)
307 PRK14106 murD UDP-N-acetylmura 94.2 0.055 1.2E-06 59.8 5.1 35 138-172 4-38 (450)
308 TIGR01350 lipoamide_DH dihydro 94.2 0.06 1.3E-06 59.7 5.3 38 139-176 170-207 (461)
309 PF01262 AlaDh_PNT_C: Alanine 94.2 0.064 1.4E-06 50.6 4.7 36 137-172 18-53 (168)
310 TIGR02053 MerA mercuric reduct 93.9 0.066 1.4E-06 59.4 4.9 38 139-176 166-203 (463)
311 COG5044 MRS6 RAB proteins gera 93.9 2.3 5E-05 44.4 15.3 45 138-182 5-49 (434)
312 PRK06370 mercuric reductase; V 93.9 0.076 1.7E-06 58.9 5.3 39 139-177 171-209 (463)
313 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.065 1.4E-06 51.5 4.0 34 140-173 1-34 (185)
314 PRK06912 acoL dihydrolipoamide 93.8 0.078 1.7E-06 58.8 5.1 38 139-176 170-207 (458)
315 PRK06115 dihydrolipoamide dehy 93.8 0.084 1.8E-06 58.6 5.4 37 139-175 174-210 (466)
316 PRK06292 dihydrolipoamide dehy 93.8 0.083 1.8E-06 58.6 5.3 39 138-176 168-206 (460)
317 COG1249 Lpd Pyruvate/2-oxoglut 93.7 0.085 1.8E-06 57.8 5.2 39 138-176 172-210 (454)
318 PRK07846 mycothione reductase; 93.7 0.082 1.8E-06 58.4 5.1 37 139-175 166-202 (451)
319 PF13241 NAD_binding_7: Putati 93.7 0.062 1.3E-06 46.2 3.3 35 138-172 6-40 (103)
320 PRK06416 dihydrolipoamide dehy 93.7 0.082 1.8E-06 58.7 5.1 38 139-176 172-209 (462)
321 PF13738 Pyr_redox_3: Pyridine 93.6 0.078 1.7E-06 51.4 4.3 36 137-172 165-200 (203)
322 TIGR01421 gluta_reduc_1 glutat 93.6 0.086 1.9E-06 58.3 5.1 38 139-176 166-203 (450)
323 PRK06467 dihydrolipoamide dehy 93.6 0.086 1.9E-06 58.6 5.1 38 139-176 174-211 (471)
324 TIGR03385 CoA_CoA_reduc CoA-di 93.6 0.089 1.9E-06 57.7 5.2 36 139-174 137-172 (427)
325 PRK05249 soluble pyridine nucl 93.6 0.094 2E-06 58.2 5.3 38 139-176 175-212 (461)
326 COG0445 GidA Flavin-dependent 93.5 0.063 1.4E-06 58.5 3.6 35 139-173 4-38 (621)
327 PRK06327 dihydrolipoamide dehy 93.5 0.1 2.2E-06 58.1 5.4 38 139-176 183-220 (475)
328 PRK07818 dihydrolipoamide dehy 93.4 0.094 2E-06 58.3 5.1 38 139-176 172-209 (466)
329 PRK13512 coenzyme A disulfide 93.4 0.09 2E-06 57.9 4.9 38 139-176 148-185 (438)
330 KOG3855|consensus 93.3 0.17 3.6E-06 53.3 6.1 41 137-177 34-80 (481)
331 TIGR01470 cysG_Nterm siroheme 93.2 0.13 2.8E-06 50.2 5.1 35 138-172 8-42 (205)
332 COG0569 TrkA K+ transport syst 93.2 0.099 2.2E-06 51.9 4.3 65 140-213 1-65 (225)
333 PF01488 Shikimate_DH: Shikima 93.1 0.15 3.3E-06 46.1 5.0 35 137-171 10-45 (135)
334 TIGR03452 mycothione_red mycot 93.0 0.12 2.7E-06 57.1 5.1 38 139-176 169-206 (452)
335 TIGR01316 gltA glutamate synth 93.0 0.12 2.7E-06 57.0 5.1 36 138-173 271-306 (449)
336 PRK06129 3-hydroxyacyl-CoA deh 92.9 0.11 2.4E-06 54.3 4.4 34 140-173 3-36 (308)
337 TIGR02374 nitri_red_nirB nitri 92.8 0.12 2.7E-06 61.1 5.0 38 139-176 140-177 (785)
338 PRK12831 putative oxidoreducta 92.8 0.14 3E-06 56.8 5.1 36 137-172 279-314 (464)
339 PRK09564 coenzyme A disulfide 92.7 0.15 3.3E-06 56.1 5.3 38 139-176 149-186 (444)
340 TIGR03140 AhpF alkyl hydropero 92.7 0.13 2.8E-06 57.9 4.8 36 138-173 351-386 (515)
341 PRK07845 flavoprotein disulfid 92.6 0.16 3.5E-06 56.4 5.4 39 139-177 177-215 (466)
342 PRK04148 hypothetical protein; 92.5 0.13 2.9E-06 46.1 3.7 35 138-173 16-50 (134)
343 cd01080 NAD_bind_m-THF_DH_Cycl 92.5 0.18 3.9E-06 47.5 4.8 35 137-171 42-77 (168)
344 PF02558 ApbA: Ketopantoate re 92.5 0.17 3.7E-06 46.6 4.6 31 142-172 1-31 (151)
345 PRK09260 3-hydroxybutyryl-CoA 92.5 0.14 2.9E-06 53.1 4.3 34 140-173 2-35 (288)
346 PRK08293 3-hydroxybutyryl-CoA 92.4 0.15 3.1E-06 52.8 4.4 33 140-172 4-36 (287)
347 COG0686 Ald Alanine dehydrogen 92.4 0.12 2.6E-06 52.3 3.5 63 137-199 166-245 (371)
348 PRK15317 alkyl hydroperoxide r 92.3 0.15 3.4E-06 57.3 4.7 36 138-173 350-385 (517)
349 PRK14989 nitrite reductase sub 92.2 0.16 3.4E-06 60.4 4.9 38 139-176 145-182 (847)
350 PRK07066 3-hydroxybutyryl-CoA 92.2 0.17 3.6E-06 53.0 4.5 35 139-173 7-41 (321)
351 PRK06718 precorrin-2 dehydroge 92.1 0.23 4.9E-06 48.4 5.1 34 138-171 9-42 (202)
352 PTZ00058 glutathione reductase 92.1 0.17 3.7E-06 57.3 4.8 38 139-176 237-274 (561)
353 PRK06719 precorrin-2 dehydroge 92.1 0.22 4.8E-06 46.4 4.8 33 137-169 11-43 (157)
354 PRK04690 murD UDP-N-acetylmura 92.1 0.18 3.9E-06 56.0 4.8 35 139-173 8-42 (468)
355 TIGR01424 gluta_reduc_2 glutat 92.1 0.19 4E-06 55.6 5.0 37 139-175 166-202 (446)
356 TIGR00518 alaDH alanine dehydr 92.1 0.19 4.2E-06 53.8 4.9 35 138-172 166-200 (370)
357 PRK01710 murD UDP-N-acetylmura 92.0 0.2 4.2E-06 55.6 5.0 34 139-172 14-47 (458)
358 PRK07819 3-hydroxybutyryl-CoA 92.0 0.17 3.7E-06 52.3 4.2 35 140-174 6-40 (286)
359 PRK10262 thioredoxin reductase 91.9 0.2 4.4E-06 52.6 4.9 36 138-173 145-180 (321)
360 PRK07530 3-hydroxybutyryl-CoA 91.9 0.18 3.8E-06 52.3 4.3 33 140-172 5-37 (292)
361 PRK03369 murD UDP-N-acetylmura 91.9 0.19 4.2E-06 56.0 4.9 34 138-171 11-44 (488)
362 PRK04308 murD UDP-N-acetylmura 91.8 0.52 1.1E-05 52.0 8.2 36 139-174 5-40 (445)
363 PRK06116 glutathione reductase 91.8 0.21 4.6E-06 55.2 5.1 36 139-174 167-202 (450)
364 PRK09424 pntA NAD(P) transhydr 91.8 0.19 4.2E-06 55.7 4.6 37 137-173 163-199 (509)
365 TIGR03143 AhpF_homolog putativ 91.7 0.19 4.2E-06 57.1 4.7 37 138-174 142-178 (555)
366 PTZ00153 lipoamide dehydrogena 91.7 0.21 4.6E-06 57.5 4.9 39 139-177 312-350 (659)
367 PRK08010 pyridine nucleotide-d 91.6 0.26 5.7E-06 54.3 5.6 38 139-176 158-195 (441)
368 COG0771 MurD UDP-N-acetylmuram 91.6 0.2 4.4E-06 54.4 4.5 36 139-174 7-42 (448)
369 PRK12770 putative glutamate sy 91.6 0.22 4.7E-06 53.2 4.7 34 139-172 172-206 (352)
370 KOG0042|consensus 91.6 0.089 1.9E-06 57.0 1.7 41 137-177 65-105 (680)
371 PLN02507 glutathione reductase 91.6 0.22 4.7E-06 55.8 4.9 37 139-175 203-239 (499)
372 PRK06035 3-hydroxyacyl-CoA deh 91.4 0.22 4.7E-06 51.6 4.3 34 140-173 4-37 (291)
373 COG3634 AhpF Alkyl hydroperoxi 91.3 0.16 3.4E-06 52.2 3.0 39 136-174 351-389 (520)
374 TIGR01292 TRX_reduct thioredox 91.2 0.26 5.6E-06 50.9 4.7 35 138-172 140-174 (300)
375 cd01075 NAD_bind_Leu_Phe_Val_D 91.2 0.33 7.1E-06 47.2 5.1 35 138-172 27-61 (200)
376 PRK02472 murD UDP-N-acetylmura 91.2 0.26 5.7E-06 54.4 5.0 34 139-172 5-38 (447)
377 cd00401 AdoHcyase S-adenosyl-L 91.1 0.27 5.9E-06 53.1 4.9 36 137-172 200-235 (413)
378 PRK06249 2-dehydropantoate 2-r 90.9 0.31 6.8E-06 51.0 5.0 35 138-172 4-38 (313)
379 PRK01368 murD UDP-N-acetylmura 90.9 0.3 6.4E-06 54.0 5.0 33 138-171 5-37 (454)
380 PRK00141 murD UDP-N-acetylmura 90.9 0.33 7.2E-06 54.0 5.4 35 137-171 13-47 (473)
381 PLN02546 glutathione reductase 90.8 0.3 6.6E-06 55.3 5.0 39 138-176 251-289 (558)
382 PRK06522 2-dehydropantoate 2-r 90.7 0.29 6.2E-06 50.9 4.5 31 141-171 2-32 (304)
383 PRK08306 dipicolinate synthase 90.7 0.34 7.4E-06 50.2 4.9 36 138-173 151-186 (296)
384 PRK13748 putative mercuric red 90.6 0.34 7.4E-06 55.2 5.3 34 139-172 270-303 (561)
385 TIGR01423 trypano_reduc trypan 90.5 0.32 7E-06 54.2 4.9 38 139-176 187-227 (486)
386 PF14691 Fer4_20: Dihydroprymi 90.4 0.25 5.4E-06 43.0 3.0 54 73-127 53-111 (111)
387 PRK14694 putative mercuric red 90.4 0.37 8E-06 53.6 5.2 33 139-171 178-210 (468)
388 PRK05808 3-hydroxybutyryl-CoA 90.3 0.31 6.8E-06 50.2 4.3 34 140-173 4-37 (282)
389 PRK05708 2-dehydropantoate 2-r 90.3 0.36 7.8E-06 50.4 4.7 33 139-171 2-34 (305)
390 PRK12921 2-dehydropantoate 2-r 90.1 0.35 7.5E-06 50.3 4.5 30 141-170 2-31 (305)
391 PRK12778 putative bifunctional 90.1 0.36 7.7E-06 57.1 5.1 37 137-173 568-605 (752)
392 PRK14727 putative mercuric red 90.1 0.41 8.8E-06 53.4 5.3 33 139-171 188-220 (479)
393 PRK00421 murC UDP-N-acetylmura 90.0 0.39 8.5E-06 53.2 5.0 36 138-173 6-42 (461)
394 PRK11749 dihydropyrimidine deh 89.9 0.39 8.5E-06 53.2 4.9 35 138-172 272-307 (457)
395 TIGR01763 MalateDH_bact malate 89.8 0.44 9.6E-06 49.6 4.9 34 140-173 2-36 (305)
396 COG1004 Ugd Predicted UDP-gluc 89.8 0.36 7.9E-06 50.9 4.2 33 140-172 1-33 (414)
397 PRK08229 2-dehydropantoate 2-r 89.7 0.42 9.1E-06 50.7 4.7 33 140-172 3-35 (341)
398 PRK14619 NAD(P)H-dependent gly 89.6 0.5 1.1E-05 49.3 5.2 35 138-172 3-37 (308)
399 PRK11064 wecC UDP-N-acetyl-D-m 89.6 0.36 7.7E-06 52.7 4.2 34 140-173 4-37 (415)
400 TIGR02853 spore_dpaA dipicolin 89.6 0.43 9.4E-06 49.2 4.6 36 138-173 150-185 (287)
401 KOG3923|consensus 89.5 0.33 7.2E-06 49.0 3.5 33 139-171 3-42 (342)
402 PLN02545 3-hydroxybutyryl-CoA 89.5 0.41 8.8E-06 49.7 4.4 33 140-172 5-37 (295)
403 PRK06130 3-hydroxybutyryl-CoA 89.5 0.41 9E-06 50.0 4.5 33 140-172 5-37 (311)
404 PRK12549 shikimate 5-dehydroge 89.4 0.52 1.1E-05 48.6 5.0 35 138-172 126-161 (284)
405 TIGR00561 pntA NAD(P) transhyd 89.3 0.45 9.7E-06 52.7 4.7 36 138-173 163-198 (511)
406 cd05311 NAD_bind_2_malic_enz N 89.2 0.51 1.1E-05 46.9 4.7 35 138-172 24-61 (226)
407 PTZ00052 thioredoxin reductase 89.2 0.51 1.1E-05 52.9 5.2 33 139-171 182-214 (499)
408 TIGR00936 ahcY adenosylhomocys 89.2 0.5 1.1E-05 50.9 4.8 36 137-172 193-228 (406)
409 cd05191 NAD_bind_amino_acid_DH 89.2 0.74 1.6E-05 38.0 4.9 33 138-170 22-55 (86)
410 TIGR01438 TGR thioredoxin and 89.1 0.5 1.1E-05 52.7 5.1 33 139-171 180-212 (484)
411 KOG1238|consensus 89.1 0.43 9.3E-06 53.4 4.3 39 136-174 54-93 (623)
412 PRK02006 murD UDP-N-acetylmura 89.1 0.48 1E-05 53.1 4.9 34 139-172 7-40 (498)
413 PRK14618 NAD(P)H-dependent gly 89.0 0.55 1.2E-05 49.5 5.1 35 139-173 4-38 (328)
414 TIGR03026 NDP-sugDHase nucleot 89.0 0.38 8.2E-06 52.5 3.9 33 141-173 2-34 (411)
415 TIGR02354 thiF_fam2 thiamine b 88.9 0.62 1.3E-05 45.3 4.9 34 138-171 20-54 (200)
416 PF03446 NAD_binding_2: NAD bi 88.9 0.54 1.2E-05 44.0 4.4 33 140-172 2-34 (163)
417 cd05292 LDH_2 A subgroup of L- 88.9 0.52 1.1E-05 49.2 4.7 36 141-176 2-40 (308)
418 PF00670 AdoHcyase_NAD: S-aden 88.8 0.58 1.3E-05 43.5 4.3 35 138-172 22-56 (162)
419 PRK11730 fadB multifunctional 88.8 0.99 2.1E-05 52.8 7.3 62 109-173 286-347 (715)
420 PRK12779 putative bifunctional 88.5 0.51 1.1E-05 56.8 4.8 37 137-173 445-481 (944)
421 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.1 0.53 1.1E-05 52.6 4.3 34 140-173 6-39 (503)
422 KOG2755|consensus 87.9 0.32 7E-06 48.2 2.2 35 141-175 1-37 (334)
423 KOG2495|consensus 87.9 0.51 1.1E-05 50.1 3.7 75 52-174 179-267 (491)
424 KOG2311|consensus 87.8 0.51 1.1E-05 50.6 3.7 41 137-177 26-67 (679)
425 PRK05476 S-adenosyl-L-homocyst 87.6 0.76 1.6E-05 49.9 5.0 35 138-172 211-245 (425)
426 PTZ00318 NADH dehydrogenase-li 87.5 0.73 1.6E-05 50.5 4.9 35 140-174 174-222 (424)
427 PRK08268 3-hydroxy-acyl-CoA de 87.5 0.61 1.3E-05 52.2 4.3 35 139-173 7-41 (507)
428 cd01078 NAD_bind_H4MPT_DH NADP 87.4 0.91 2E-05 43.8 5.1 34 138-171 27-61 (194)
429 TIGR00507 aroE shikimate 5-deh 87.3 0.82 1.8E-05 46.8 4.9 35 138-172 116-150 (270)
430 PRK14620 NAD(P)H-dependent gly 87.2 0.74 1.6E-05 48.5 4.6 32 141-172 2-33 (326)
431 PTZ00082 L-lactate dehydrogena 87.2 0.88 1.9E-05 47.7 5.1 35 139-173 6-41 (321)
432 PRK01390 murD UDP-N-acetylmura 87.2 0.72 1.6E-05 51.1 4.7 33 139-171 9-41 (460)
433 COG1748 LYS9 Saccharopine dehy 87.1 0.78 1.7E-05 48.9 4.6 32 140-171 2-34 (389)
434 PRK00094 gpsA NAD(P)H-dependen 87.0 0.78 1.7E-05 48.1 4.7 33 140-172 2-34 (325)
435 PRK07531 bifunctional 3-hydrox 86.9 0.69 1.5E-05 51.8 4.4 33 140-172 5-37 (495)
436 PLN02494 adenosylhomocysteinas 86.9 0.9 1.9E-05 49.6 5.1 36 137-172 252-287 (477)
437 cd05291 HicDH_like L-2-hydroxy 86.9 0.84 1.8E-05 47.6 4.7 33 141-173 2-36 (306)
438 PF02254 TrkA_N: TrkA-N domain 86.9 0.99 2.1E-05 39.3 4.6 61 142-213 1-61 (116)
439 TIGR02437 FadB fatty oxidation 86.7 1.6 3.5E-05 51.0 7.4 37 137-173 311-347 (714)
440 PF00899 ThiF: ThiF family; I 86.6 0.67 1.4E-05 41.9 3.4 33 139-171 2-35 (135)
441 PRK12548 shikimate 5-dehydroge 86.6 0.99 2.1E-05 46.7 5.1 35 138-172 125-160 (289)
442 PF13478 XdhC_C: XdhC Rossmann 86.5 0.74 1.6E-05 41.7 3.5 32 142-173 1-32 (136)
443 TIGR02441 fa_ox_alpha_mit fatt 86.4 1.7 3.6E-05 51.1 7.3 36 138-173 334-369 (737)
444 COG5259 RSC8 RSC chromatin rem 86.3 0.43 9.3E-06 50.6 2.1 87 40-130 57-145 (531)
445 PRK12814 putative NADPH-depend 86.2 0.96 2.1E-05 52.5 5.2 37 137-173 321-358 (652)
446 KOG4405|consensus 86.0 0.86 1.9E-05 48.0 4.1 48 137-184 6-53 (547)
447 TIGR03197 MnmC_Cterm tRNA U-34 85.8 1.3 2.9E-05 47.6 5.8 44 418-467 147-190 (381)
448 PRK07417 arogenate dehydrogena 85.8 0.96 2.1E-05 46.5 4.5 32 141-172 2-33 (279)
449 KOG3851|consensus 85.8 0.74 1.6E-05 47.0 3.4 38 136-173 36-75 (446)
450 PRK05562 precorrin-2 dehydroge 85.8 1.2 2.5E-05 44.0 4.8 32 137-168 23-54 (223)
451 PRK11199 tyrA bifunctional cho 85.7 2.1 4.7E-05 45.9 7.3 35 138-172 97-132 (374)
452 TIGR02964 xanthine_xdhC xanthi 85.7 1.2 2.5E-05 44.8 4.9 36 138-173 99-134 (246)
453 PF07991 IlvN: Acetohydroxy ac 85.7 1.4 3E-05 40.9 4.9 36 138-173 3-38 (165)
454 PRK00683 murD UDP-N-acetylmura 85.4 1 2.2E-05 49.2 4.8 33 140-172 4-36 (418)
455 TIGR01505 tartro_sem_red 2-hyd 85.4 0.95 2E-05 46.8 4.2 32 141-172 1-32 (291)
456 PRK03803 murD UDP-N-acetylmura 85.4 0.95 2.1E-05 50.0 4.5 34 139-172 6-39 (448)
457 PRK12475 thiamine/molybdopteri 85.4 1.2 2.6E-05 47.1 5.0 34 138-171 23-57 (338)
458 cd01065 NAD_bind_Shikimate_DH 85.3 1.4 3.1E-05 40.5 5.0 36 138-173 18-54 (155)
459 PLN02172 flavin-containing mon 85.3 0.83 1.8E-05 50.5 3.9 36 138-173 203-238 (461)
460 PRK15057 UDP-glucose 6-dehydro 85.2 0.91 2E-05 49.0 4.1 32 141-173 2-33 (388)
461 PF00056 Ldh_1_N: lactate/mala 85.0 1.5 3.1E-05 40.1 4.8 33 140-172 1-36 (141)
462 PRK03806 murD UDP-N-acetylmura 85.0 1.2 2.5E-05 49.1 5.0 34 139-172 6-39 (438)
463 PRK00258 aroE shikimate 5-dehy 85.0 1.3 2.8E-05 45.6 4.9 35 138-172 122-157 (278)
464 PRK12810 gltD glutamate syntha 85.0 1.2 2.6E-05 49.5 5.1 37 614-652 431-467 (471)
465 PRK00066 ldh L-lactate dehydro 84.9 1.5 3.3E-05 45.9 5.5 36 137-172 4-41 (315)
466 PRK06223 malate dehydrogenase; 84.9 1.2 2.7E-05 46.4 4.9 34 140-173 3-37 (307)
467 PF10727 Rossmann-like: Rossma 84.8 0.69 1.5E-05 41.3 2.5 38 136-173 7-44 (127)
468 PRK15116 sulfur acceptor prote 84.8 1.3 2.8E-05 45.0 4.7 35 138-172 29-64 (268)
469 TIGR01915 npdG NADPH-dependent 84.6 1.2 2.7E-05 43.8 4.5 32 141-172 2-34 (219)
470 PLN02520 bifunctional 3-dehydr 84.6 1.2 2.7E-05 50.1 5.0 34 138-171 378-411 (529)
471 COG1252 Ndh NADH dehydrogenase 84.6 0.73 1.6E-05 49.6 2.9 38 138-175 154-204 (405)
472 TIGR01317 GOGAT_sm_gam glutama 84.4 1.3 2.8E-05 49.5 5.0 38 614-653 445-482 (485)
473 cd05293 LDH_1 A subgroup of L- 84.4 1.5 3.2E-05 45.8 5.2 34 139-172 3-38 (312)
474 PTZ00075 Adenosylhomocysteinas 84.4 1.4 3E-05 48.3 5.0 37 137-173 252-288 (476)
475 KOG2304|consensus 84.3 1 2.3E-05 43.6 3.5 38 137-174 9-46 (298)
476 COG2072 TrkA Predicted flavopr 84.3 1.1 2.4E-05 49.4 4.3 37 137-173 173-209 (443)
477 COG1250 FadB 3-hydroxyacyl-CoA 84.3 1.1 2.4E-05 46.3 4.0 33 139-171 3-35 (307)
478 PRK11154 fadJ multifunctional 84.2 2.4 5.1E-05 49.7 7.2 58 111-172 285-343 (708)
479 PTZ00117 malate dehydrogenase; 84.1 1.5 3.2E-05 46.0 5.0 35 138-172 4-39 (319)
480 COG0281 SfcA Malic enzyme [Ene 84.0 1.4 3.1E-05 46.8 4.7 35 137-171 197-234 (432)
481 TIGR01809 Shik-DH-AROM shikima 83.7 1.5 3.3E-05 45.1 4.8 35 138-172 124-159 (282)
482 TIGR02356 adenyl_thiF thiazole 83.7 1.8 3.8E-05 42.2 5.0 34 138-171 20-54 (202)
483 TIGR01318 gltD_gamma_fam gluta 83.5 1.4 3E-05 49.0 4.8 36 138-173 281-317 (467)
484 PRK10669 putative cation:proto 83.5 2.4 5.2E-05 48.3 6.8 64 139-213 417-480 (558)
485 TIGR01087 murD UDP-N-acetylmur 83.4 1.3 2.9E-05 48.6 4.5 33 141-173 1-33 (433)
486 KOG1335|consensus 83.4 0.6 1.3E-05 48.8 1.6 40 138-177 210-249 (506)
487 PRK07502 cyclohexadienyl dehyd 83.3 1.7 3.7E-05 45.3 5.1 34 139-172 6-41 (307)
488 PLN02353 probable UDP-glucose 83.2 1.4 2.9E-05 48.9 4.5 33 140-172 2-36 (473)
489 PRK14027 quinate/shikimate deh 83.1 1.8 3.8E-05 44.6 5.0 34 139-172 127-161 (283)
490 PRK00045 hemA glutamyl-tRNA re 83.1 1.5 3.3E-05 48.0 4.8 36 137-172 180-216 (423)
491 PF02826 2-Hacid_dh_C: D-isome 83.0 2 4.3E-05 40.8 5.0 40 136-175 33-72 (178)
492 TIGR01035 hemA glutamyl-tRNA r 82.9 1.6 3.5E-05 47.6 4.8 36 137-172 178-214 (417)
493 PRK03815 murD UDP-N-acetylmura 82.7 1.4 3.1E-05 47.7 4.4 30 141-171 2-31 (401)
494 PRK12550 shikimate 5-dehydroge 82.6 1.7 3.7E-05 44.4 4.6 35 139-173 122-157 (272)
495 PRK09496 trkA potassium transp 82.6 1.4 3E-05 48.7 4.3 34 140-173 1-34 (453)
496 cd05213 NAD_bind_Glutamyl_tRNA 82.6 1.7 3.6E-05 45.5 4.6 35 138-172 177-212 (311)
497 PRK08644 thiamine biosynthesis 82.4 2 4.4E-05 42.1 4.9 34 138-171 27-61 (212)
498 COG1893 ApbA Ketopantoate redu 82.4 1.4 2.9E-05 46.0 3.8 34 140-173 1-34 (307)
499 PRK15461 NADH-dependent gamma- 82.3 1.6 3.6E-05 45.2 4.5 32 141-172 3-34 (296)
500 TIGR02355 moeB molybdopterin s 82.2 2 4.3E-05 43.1 4.9 34 138-171 23-57 (240)
No 1
>PLN03000 amine oxidase
Probab=100.00 E-value=1.6e-81 Score=705.62 Aligned_cols=517 Identities=42% Similarity=0.712 Sum_probs=427.2
Q ss_pred HHHHHHcCCCCCCCChhHhhh--ccccccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHH
Q psy6038 36 EGAAFQSRLPYDKMTTNEVQY--FPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRL 113 (661)
Q Consensus 36 ~~~a~~~~l~~~~~~~~e~~~--~p~~~~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (661)
.-.|++++||+|.|+++|+++ || ++.. ..+..||+|||+||++|..||+.++|.++|.+|++.++ ..++..+
T Consensus 83 ~~~a~~~~~p~d~l~~~e~~~~~~~-~~~~--~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~~---~~l~~~~ 156 (881)
T PLN03000 83 ALLALTAGFPADSLTEEEIEFGVVP-IVGG--IEQVNYILIRNHIISKWRENISSWVTKEMFLGSIPKHC---SSLLDSA 156 (881)
T ss_pred HHHHHHcCCCcccCCHHHHhccccC-cccc--cchhhHHHHHHHHHHHHHHCCceeecHHHHhhhcchhH---HHHHHHH
Confidence 467999999999999999888 89 4444 35789999999999999999999999999999998753 4788999
Q ss_pred HHHHHHhhHHhcCCccccCC--CCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCC----ccc
Q psy6038 114 HCYLERHGYINFGIFQRITP--IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS----NYV 187 (661)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~----~~~ 187 (661)
+.||+++||||||+...... +.....++|+|||||++||+||++|.+.|++|+|+|+++++|||++|.+.. +..
T Consensus 157 ~~~L~r~G~in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~ 236 (881)
T PLN03000 157 YNYLVTHGYINFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAA 236 (881)
T ss_pred HHHHHHcCcccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceE
Confidence 99999999999999765432 223457899999999999999999999999999999999999999999865 467
Q ss_pred cccccEEEeCCCCChhhHHHHhhChhhhhhcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccc
Q psy6038 188 ADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYL 267 (661)
Q Consensus 188 ~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (661)
+|+|++|+++..+|++..|++++|++++.....+++|..+|+ .++.+.+..++..++.+++....+..
T Consensus 237 ~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk-----~v~~~~~~~ve~~fn~lLd~~~~lr~------- 304 (881)
T PLN03000 237 ADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGK-----PVDPDVDLKVEVAFNQLLDKASKLRQ------- 304 (881)
T ss_pred eecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCc-----CCchhhhhhHHHHHHHHHHHHHHHHH-------
Confidence 999999999999999999999999998888778889999998 55554443334444444332221110
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHh
Q psy6038 268 EGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLH 347 (661)
Q Consensus 268 ~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 347 (661)
.+. ....+.++ .+++ .. +.+.+.
T Consensus 305 ---------------------------l~~-------~~~~D~SL-g~aL------------e~----------~~~~~g 327 (881)
T PLN03000 305 ---------------------------LMG-------DVSMDVSL-GAAL------------ET----------FRQVSG 327 (881)
T ss_pred ---------------------------Hhc-------ccCcCCcH-HHHH------------HH----------HHHHHc
Confidence 000 00000000 0100 00 000100
Q ss_pred hhhcCCCCccccChhhHHHHHHHHhhhhhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccCceeeCce
Q psy6038 348 AMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSS 427 (661)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt~ 427 (661)
.-+...++++++|+++++++.++..++.+++..|+++..+++.|.+++++|||++|+++|++.|+|++|++
T Consensus 328 ---------~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~ 398 (881)
T PLN03000 328 ---------NDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKT 398 (881)
T ss_pred ---------ccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCcccCCc
Confidence 01234567788999999999999999999999998877777888999999999999999999999999999
Q ss_pred EEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEc
Q psy6038 428 VTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCF 507 (661)
Q Consensus 428 V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f 507 (661)
|++|++++++|.|++. +++++||+||||+|+++|++ +.|.|.|+||++|++||++++||.++||++.|
T Consensus 399 Vt~I~~~~dgV~V~~~-------~~~~~AD~VIvTVPlgVLk~-----~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~F 466 (881)
T PLN03000 399 VQTIRYGSNGVKVIAG-------NQVYEGDMVLCTVPLGVLKN-----GSIKFVPELPQRKLDCIKRLGFGLLNKVAMLF 466 (881)
T ss_pred EEEEEECCCeEEEEEC-------CcEEEeceEEEcCCHHHHhh-----CceeeCCCCCHHHHHHHHcCCCcceEEEEEEe
Confidence 9999999999988753 35899999999999999997 66999999999999999999999999999999
Q ss_pred cccccccCCCceeeeccCCCCCCceEEEEec---CCCcEEEEEeccchhhhhhccc--------------CCCC--CCCC
Q psy6038 508 DKIFWDPAENLFGHVGSTTASRGELFLFWNL---YQAPVLLALVAGEAASILEDVS--------------IFPT--NTVP 568 (661)
Q Consensus 508 ~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~---~~~~vL~~~~~g~~a~~~~~~~--------------~fg~--~~~~ 568 (661)
+++||+.+.+.||.+......++..+.|++. .+.++|++|+.|+.|..++.++ +|+. ..++
T Consensus 467 d~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp 546 (881)
T PLN03000 467 PYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVP 546 (881)
T ss_pred CCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccC
Confidence 9999998878899887655556777777764 3467999999999998887776 7874 3468
Q ss_pred CCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHH
Q psy6038 569 QPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQ 648 (661)
Q Consensus 569 ~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~ 648 (661)
+|..+.+++|.+|||++|||+|+.||+.+.+++.|++|+. .+|||||||||+..|+||||||++||+|||.+|++.
T Consensus 547 ~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~----~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~ 622 (881)
T PLN03000 547 DPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVG----DGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQS 622 (881)
T ss_pred CceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCC----CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999983 479999999999999999999999999999999999
Q ss_pred hhcC
Q psy6038 649 ILGA 652 (661)
Q Consensus 649 ~~g~ 652 (661)
+...
T Consensus 623 l~~~ 626 (881)
T PLN03000 623 AKAR 626 (881)
T ss_pred hhhc
Confidence 8764
No 2
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.3e-78 Score=684.12 Aligned_cols=522 Identities=40% Similarity=0.675 Sum_probs=430.5
Q ss_pred HHHHHcCCCCCCCChhHhhh-ccccccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHH
Q psy6038 37 GAAFQSRLPYDKMTTNEVQY-FPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHC 115 (661)
Q Consensus 37 ~~a~~~~l~~~~~~~~e~~~-~p~~~~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (661)
-.|++++||+|.|+++|..+ |++++.+ ..+++||+|||+||++|..||+.++|.+.|..|++.+ ...++..++.
T Consensus 135 ~~a~~~~~p~~~l~~~e~~~~~~~~~~~--~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~---~~~l~~~~~~ 209 (808)
T PLN02328 135 LIAISVGFPVDSLTEEEIEANVVSTIGG--TEQANYIVVRNHILARWRSNVSNWLTRDHALESIRAE---HKNLVDSAYN 209 (808)
T ss_pred HHHHHcCCCCccCCHHHHhhcCcchhcc--cceeehhhHHHHHHHHHHhCCcceecHHHHHhhcchh---hHHHHHHHHH
Confidence 46888999999999999999 9999887 6788999999999999999999999999999999875 3678999999
Q ss_pred HHHHhhHHhcCCccccC-----CCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCcc----
Q psy6038 116 YLERHGYINFGIFQRIT-----PIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY---- 186 (661)
Q Consensus 116 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~---- 186 (661)
|++++|+||||+.+... +++....++|+|||||++||+||++|++.|++|+|+|+++++|||+.+.+..+.
T Consensus 210 ~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~ 289 (808)
T PLN02328 210 FLLEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVA 289 (808)
T ss_pred HHhccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcce
Confidence 99999999999986533 233456789999999999999999999999999999999999999999887543
Q ss_pred ccccccEEEeCCCCChhhHHHHhhChhhhhhcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhccccccc
Q psy6038 187 VADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNY 266 (661)
Q Consensus 187 ~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (661)
.+|+|++|+++..+|++..+.+++|++.+.+...+.+|..+|. .++...+..+...++.+++....+..
T Consensus 290 ~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~dG~-----~~~~~~~~~v~~~f~~lL~~~~klr~------ 358 (808)
T PLN02328 290 AADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGK-----AVDAEIDSKIEASFNKLLDRVCKLRQ------ 358 (808)
T ss_pred eccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCCCc-----CcchhhhhhHHHHHHHHHHHHHHHHH------
Confidence 5899999999998999999999999998888777889988888 55444433333334443332221110
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHH
Q psy6038 267 LEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKL 346 (661)
Q Consensus 267 ~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 346 (661)
... .. ....+....+++ ..+. +..
T Consensus 359 ----------------------------~~~---~~---~~~~D~SLg~~l------------e~~~----------~~~ 382 (808)
T PLN02328 359 ----------------------------AMI---EE---VKSVDVNLGTAL------------EAFR----------HVY 382 (808)
T ss_pred ----------------------------hhh---hc---ccccCcCHHHHH------------HHHh----------hhh
Confidence 000 00 000000001111 1110 000
Q ss_pred hhhhcCCCCccccChhhHHHHHHHHhhhhhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccCceeeCc
Q psy6038 347 HAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNS 426 (661)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt 426 (661)
....++.++++++|+++++++.++..++.+++..|+++..+++.|.+++++|||++|+++|++.++|++|+
T Consensus 383 ---------~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~ 453 (808)
T PLN02328 383 ---------KVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYER 453 (808)
T ss_pred ---------ccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCC
Confidence 12346778889999999999999999999999999987777778889999999999999999999999999
Q ss_pred eEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEE
Q psy6038 427 SVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLC 506 (661)
Q Consensus 427 ~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~ 506 (661)
+|++|.+.+++|.|. .+ |++++||+||||+|+++|++ +.|.|.|+||++|++||++++||.++||++.
T Consensus 454 ~V~~I~~~~dgV~V~-~~------G~~~~AD~VIvTvPl~vLk~-----~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~ 521 (808)
T PLN02328 454 TVESIRYGVDGVIVY-AG------GQEFHGDMVLCTVPLGVLKK-----GSIEFYPELPQRKKDAIQRLGYGLLNKVALL 521 (808)
T ss_pred eeEEEEEcCCeEEEE-eC------CeEEEcCEEEECCCHHHHhh-----cccccCCCCCHHHHHHHHcCCCcceEEEEEE
Confidence 999999999888773 33 68899999999999999997 6699999999999999999999999999999
Q ss_pred ccccccccCCCceeeeccCCCCCCceEEEEec---CCCcEEEEEeccchhhhhhccc--------------CCCC--CCC
Q psy6038 507 FDKIFWDPAENLFGHVGSTTASRGELFLFWNL---YQAPVLLALVAGEAASILEDVS--------------IFPT--NTV 567 (661)
Q Consensus 507 f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~---~~~~vL~~~~~g~~a~~~~~~~--------------~fg~--~~~ 567 (661)
|+++||+...+.||.+..+...+|.++.|++. .+.++|++|+.|+.+..++.++ +|+. ..+
T Consensus 522 F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~v 601 (808)
T PLN02328 522 FPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVV 601 (808)
T ss_pred eCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccc
Confidence 99999998777899887665667777777764 2467999999999988876655 6774 246
Q ss_pred CCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHH
Q psy6038 568 PQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647 (661)
Q Consensus 568 ~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~ 647 (661)
++|..+.+++|..|||++|+|+++.+|+.+.+++.|++|+. .+|||||||||+..|+||||||++||+|||.+|++
T Consensus 602 p~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~----~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~ 677 (808)
T PLN02328 602 PDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVG----DGRVFFAGEATNKQYPATMHGAFLSGMREAANILR 677 (808)
T ss_pred cCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCC----CCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998889999999973 47999999999999999999999999999999999
Q ss_pred HhhcCCCC
Q psy6038 648 QILGANYR 655 (661)
Q Consensus 648 ~~~g~~~~ 655 (661)
.+...-..
T Consensus 678 ~~~~~~~~ 685 (808)
T PLN02328 678 VARRRSLC 685 (808)
T ss_pred HHhhcccC
Confidence 98765443
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=3e-76 Score=663.07 Aligned_cols=541 Identities=39% Similarity=0.676 Sum_probs=429.8
Q ss_pred hhhcccCCccccccccCCCccCCcccCCCcccHHHHHHHcCCCCCCCChhHh-h-hccccccCCccchhHHHHHHHHHHH
Q psy6038 3 EIEENSNGTISSVAKTEGDVYDEDIEYHIPEGLEGAAFQSRLPYDKMTTNEV-Q-YFPDISNNPIHSHKTFLHIRNRILQ 80 (661)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~e~-~-~~p~~~~~~~~~~~~~l~irn~~~~ 80 (661)
-|+++-+|.+..-..+-++ .+. +...-...|++..||.|.|+++|+ + +.|..-.. .++.||+|||+||+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~yl~irn~il~ 102 (738)
T PLN02529 32 LIEKHLGGSFKKKNRTKQD---LEK---ETETEAMIALSVGFPIDALLEEEIRAGVVRELGGK---EQNDYIVVRNHILA 102 (738)
T ss_pred HHHHhcCCCccccCCCchh---ccc---ccHHHHHHHHHcCCCccccCHHHHhccccCccccc---cceeeehHHHHHHH
Confidence 3677777776632111111 111 111224568889999999999998 4 46655333 56789999999999
Q ss_pred HHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHHHHHHhhHHhcCCccccC--CCCCCCCCcEEEEccChHHHHHHHHH
Q psy6038 81 MWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRIT--PIPVKKSGKVIVIGAGISGLAAARHM 158 (661)
Q Consensus 81 ~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~iiG~G~aGl~aa~~l 158 (661)
+|..||+.++|.+++..|+..++ ...|..+..|+.+++++|||+.+... .++....++|+|||||++||+||+.|
T Consensus 103 ~w~~np~~~~~~~~a~~~~~~~i---~~ci~~c~~~l~~~~~inc~vnp~~~~~~~~~~~~~~v~viGaG~aGl~aA~~l 179 (738)
T PLN02529 103 RWRSNVGIWLSKGQIKETVSSEY---EHLISAAYDFLLYNGYINFGVSPSFASPIPEEGTEGSVIIVGAGLAGLAAARQL 179 (738)
T ss_pred HHHHCCceeecHHHHhhhchhhH---HHHHHHHHHHHHhCCCcceeecccccCCCCcccCCCCEEEECcCHHHHHHHHHH
Confidence 99999999999999999987653 34566899999999999999876532 22345678999999999999999999
Q ss_pred HHCCCcEEEEcCCCCCCCceeccCCC--c--cccccccEEEeCCCCChhhHHHHhhChhhhhhcCCCcEEecCCCCCCCC
Q psy6038 159 EQFGIEVVVLEARERVGGRIVTFKKS--N--YVADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNL 234 (661)
Q Consensus 159 ~~~g~~v~v~e~~~~~GG~i~t~~~~--~--~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~G~~~~~~ 234 (661)
+++|++|+|||+++++|||++|.+.+ + ..+|+|++|+++...||+..+++++|++++.+...+.+|..+|.
T Consensus 180 ~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~----- 254 (738)
T PLN02529 180 LSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGA----- 254 (738)
T ss_pred HHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCc-----
Confidence 99999999999999999999998874 2 37999999999999999999999999998888778889999998
Q ss_pred cCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCchhH
Q psy6038 235 QVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAV 314 (661)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (661)
.++.+.+..++..++.+++....+ ...+. .. ..+....
T Consensus 255 ~v~~~~~~~~~~~~~~~l~~~~~l----------------------------------~~~~~---~~-----~~d~Sl~ 292 (738)
T PLN02529 255 LVDKEIDSNIEFIFNKLLDKVTEL----------------------------------RQIMG---GF-----ANDISLG 292 (738)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHH----------------------------------HHhcc---cC-----ccCCCHH
Confidence 555444333333333333222111 10000 00 0000001
Q ss_pred HHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhhhhcCCCCccccccCCCCCC
Q psy6038 315 EFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDD 394 (661)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~ 394 (661)
+++. +. ... ....+++.++++++|+++++++.++..++.+|+..|.++.
T Consensus 293 ~~le------------~~--------------~~~-----~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~ 341 (738)
T PLN02529 293 SVLE------------RL--------------RQL-----YGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDD 341 (738)
T ss_pred HHHH------------HH--------------Hhh-----hccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhcc
Confidence 1110 00 000 0113566778899999999999999999999999999887
Q ss_pred CccccCCceeeccchhHHHHHHhccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCC
Q psy6038 395 DFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQP 474 (661)
Q Consensus 395 ~~~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~ 474 (661)
.+++.|.+++++|||++|+++|+++++|+||++|++|.+++++|+|++ + ++++.||+||||+|+++|++
T Consensus 342 ~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t-~------~~~~~AD~VIVTVPlgVLk~---- 410 (738)
T PLN02529 342 PYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIA-G------SQVFQADMVLCTVPLGVLKK---- 410 (738)
T ss_pred ccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEE-C------CEEEEcCEEEECCCHHHHHh----
Confidence 788889999999999999999999999999999999999999988865 2 56899999999999999996
Q ss_pred CCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEecC---CCcEEEEEeccc
Q psy6038 475 PKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLY---QAPVLLALVAGE 551 (661)
Q Consensus 475 ~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~~---~~~vL~~~~~g~ 551 (661)
..|.|.|+||++|++||++++||.++||++.|+++||+.+.+.||.+......++.++.+++.. +.++|++|+.|+
T Consensus 411 -~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~ 489 (738)
T PLN02529 411 -RTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGE 489 (738)
T ss_pred -ccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECch
Confidence 5699999999999999999999999999999999999887678898876555667766666542 457999999999
Q ss_pred hhhhhhccc--------------CCCC--CCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCc
Q psy6038 552 AASILEDVS--------------IFPT--NTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPR 615 (661)
Q Consensus 552 ~a~~~~~~~--------------~fg~--~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~r 615 (661)
.|..++.++ +|+. ..+|+|..+.+++|.+|||++|||+++.+|+.+.+++.|++|+. +|
T Consensus 490 ~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~-----gr 564 (738)
T PLN02529 490 AAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVS-----GR 564 (738)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCC-----CC
Confidence 988777665 6774 34678999999999999999999999999988888899999874 89
Q ss_pred EEEecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 616 LFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 616 l~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
||||||||+..|+||||||++||+|||.+|++.+.
T Consensus 565 L~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 565 LFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred EEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999874
No 4
>PLN02976 amine oxidase
Probab=100.00 E-value=4.9e-68 Score=606.81 Aligned_cols=562 Identities=39% Similarity=0.665 Sum_probs=434.9
Q ss_pred HHHHHHcCCCCCCCChhHhhhccccccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhcc---ccCCCCcchhhHHH
Q psy6038 36 EGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQK---IESPFNSEVQLVSR 112 (661)
Q Consensus 36 ~~~a~~~~l~~~~~~~~e~~~~p~~~~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~---~~~~~~~~~~~~~~ 112 (661)
..||-++.|..-...+.|.-.|-|++.. +-++..||..||.||-+|..|...++...+|--. .... ....-+|+.
T Consensus 447 ~~aav~~gl~a~~~~~~e~~~~k~~lkr-~~~~q~yl~cr~~~l~~w~k~~~~~l~~~~c~v~~~~~~~e-~~~~~l~r~ 524 (1713)
T PLN02976 447 GAAAVSAGLKARAVGPIEKIKFKEVLKR-KGGLQEYLECRNMILGLWSKDVSRILPLADCGVTDTPSEDE-SPRASLIRE 524 (1713)
T ss_pred cHhhhhccccccccChHHHHHHHHHHHh-ccchHHHHHHHHHHHHHhhhhhhhcccHhhccccCCccccc-CchhhHHHH
Confidence 4789999999999999999999999998 8899999999999999999999999999988432 1111 156779999
Q ss_pred HHHHHHHhhHHhcCCccccC---C--------------------------------------------------------
Q psy6038 113 LHCYLERHGYINFGIFQRIT---P-------------------------------------------------------- 133 (661)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------------------- 133 (661)
|+.||..+||||.|+..... +
T Consensus 525 ~~~fld~~gyin~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1713)
T PLN02976 525 VYLFLDQRGYINAGIASEKEKAEPSTNHNYKLVEEKTLEESSGASVADSEDGVSFILGQVKSSESSTEGKDCVLVDDEND 604 (1713)
T ss_pred HHHHhhccCceecccccccccCCCCCCcchhhhhccccccCCcccccccccchhhhhhcccccccccccccccccccchh
Confidence 99999999999999863110 0
Q ss_pred --------------------------------------------------C-----------------------------
Q psy6038 134 --------------------------------------------------I----------------------------- 134 (661)
Q Consensus 134 --------------------------------------------------~----------------------------- 134 (661)
+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1713)
T PLN02976 605 ASGDLPNVCECSELLASDIQQCGASNEKLNNGLVSLDALSASPSSSVLDSPETLSVIKPELRNELQSVQSNSCIEMGGNH 684 (1713)
T ss_pred hhccccccccHhhhcccchhhcchhhhhhhccccchhhhccCCccccccCcccccccchhhhcccccchhhhHHhcCCCC
Confidence 0
Q ss_pred ----CCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCC-CccccccccEEEeCCCC--------C
Q psy6038 135 ----PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKK-SNYVADLGAMVVTGLGG--------N 201 (661)
Q Consensus 135 ----~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~-~~~~~d~G~~~i~~~~~--------~ 201 (661)
+....++|+|||||++||+||++|.+.|++|+|||+++++||++++.+. .++.+|+|++|++|... |
T Consensus 685 ~~~~~~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~n 764 (1713)
T PLN02976 685 CVLCDSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPD 764 (1713)
T ss_pred CccCCcCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEeccccccccccccc
Confidence 0123578999999999999999999999999999999999999999875 57889999999998643 6
Q ss_pred hhhHHHHhhChhhhhhcCCCcEEe-cCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHH
Q psy6038 202 PINILARQINMELLKIGHQCPLYQ-SSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQE 280 (661)
Q Consensus 202 ~~~~l~~~lgl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~ 280 (661)
|+..+++++|+++......+++|. .+|. .++.+.+..+...++.+++........... .+...|+ .+
T Consensus 765 p~~~la~qlGl~l~~~~~~~~~yd~~~G~-----~V~~e~~~~v~~~fn~lld~~~~~~~~~g~---~a~d~SL----gd 832 (1713)
T PLN02976 765 PSSLICAQLGLELTVLNSDCPLYDVVTGE-----KVPADLDEALEAEYNSLLDDMVLLVAQKGE---HAMKMSL----ED 832 (1713)
T ss_pred HHHHHHHhcCCccccccCCCceeEccCCc-----CCCHHHHHHHHHHHHHHHHHHHHHHhhccc---CccCCCH----HH
Confidence 777789999999877777677665 5677 788877777888888888766543222110 1112222 11
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccC
Q psy6038 281 ELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLS 360 (661)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~ 360 (661)
.+...+. .... .. ....+. +........++......+ +.. ...+ ......+++
T Consensus 833 ~Le~~~~------~~~~--~~------~~~~~~-~~~~~~~~~~l~~~~~~~--v~G--~~~e--------r~s~~~~Ls 885 (1713)
T PLN02976 833 GLEYALK------RRRM--PR------PGVDID-ETELGNAADDLYDSASTG--VDG--GHCE--------KESKEDVLS 885 (1713)
T ss_pred HHHHHHh------hhhc--cc------cccccc-hhhcccchhhhhhhhhhc--ccc--cchh--------hhhHHHhhC
Confidence 1111000 0000 00 000000 000000000000000000 000 0000 001234567
Q ss_pred hhhHHHHHHHHhhhhhhcCCCCccccccCCCCCCCc-cccCCceeeccchhHHHHHHhccCceeeCceEEEEEec-----
Q psy6038 361 VKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDF-EFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYN----- 434 (661)
Q Consensus 361 ~~~~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~~~-~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt~V~~I~~~----- 434 (661)
+..+++++|++.++++.++..+..+|+..|.++..| .+.|.+++++|||++|+++|++.++|+||++|++|.++
T Consensus 886 ~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~ 965 (1713)
T PLN02976 886 PLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAG 965 (1713)
T ss_pred HHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCccc
Confidence 888899999999999999999999999999876554 46788999999999999999999999999999999995
Q ss_pred -----CCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccc
Q psy6038 435 -----SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDK 509 (661)
Q Consensus 435 -----~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~ 509 (661)
+++|.|++.+ |++|+||+||+|+|+++|+. +.|.|.|+||++|.+||++++||.++||+|.|++
T Consensus 966 ~~~s~~dGVtVtTsD------GetftADaVIVTVPLGVLKa-----g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdr 1034 (1713)
T PLN02976 966 ASGSSRKKVKVSTSN------GSEFLGDAVLITVPLGCLKA-----ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPE 1034 (1713)
T ss_pred ccccCCCcEEEEECC------CCEEEeceEEEeCCHHHhhh-----cccccCCcccHHHHHHHHhhccccceEEEEEeCC
Confidence 3568887755 78899999999999999997 5699999999999999999999999999999999
Q ss_pred cccccCCCceeeeccCCCCCCceEEEEecC---CCcEEEEEeccchhhhhhccc--------------CCCCCCCCCCce
Q psy6038 510 IFWDPAENLFGHVGSTTASRGELFLFWNLY---QAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKE 572 (661)
Q Consensus 510 ~fW~~~~~~~g~~~~~~~~~g~~~~~~~~~---~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p~~ 572 (661)
+||+.+...||........++.++.+|+.. +.++|++|+.|..|..++.++ +||...+|+|..
T Consensus 1035 pFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~ 1114 (1713)
T PLN02976 1035 VFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVA 1114 (1713)
T ss_pred ccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcce
Confidence 999987778886655444577777788653 468999999999887776655 788766789999
Q ss_pred EEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhh-c
Q psy6038 573 TVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL-G 651 (661)
Q Consensus 573 ~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~-g 651 (661)
+.+++|..|||++|+|+|++||+.+.+++.|++|++ +|||||||||+..|+||||||++||+|||.+|++.+. |
T Consensus 1115 ~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVg-----gRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976 1115 SVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVE-----NCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred eEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCC-----CcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999889999999985 6899999999999999999999999999999999986 5
Q ss_pred CCC
Q psy6038 652 ANY 654 (661)
Q Consensus 652 ~~~ 654 (661)
.+|
T Consensus 1190 ~~~ 1192 (1713)
T PLN02976 1190 NDY 1192 (1713)
T ss_pred Ccc
Confidence 454
No 5
>KOG0029|consensus
Probab=100.00 E-value=5.3e-63 Score=537.25 Aligned_cols=432 Identities=45% Similarity=0.785 Sum_probs=356.8
Q ss_pred CCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccc-cccccEEEeCCCCChhhHHHHhhChh
Q psy6038 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYV-ADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 135 ~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~-~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
...++++|||||||+|||+||++|.+.|++|+|||+++|+|||++|++..+.. +|+|++|++|..+||+..+++|+|++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 45667899999999999999999999999999999999999999999987666 99999999999999999999999999
Q ss_pred hhhhcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHH
Q psy6038 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEIL 293 (661)
Q Consensus 214 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~ 293 (661)
..+++..|++|...+. ......+...+..++.++.....+.+..+.....-...++ .+.+..
T Consensus 91 ~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~--------- 152 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGG-----ESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSF----GEALEA--------- 152 (501)
T ss_pred cceecccccccccCCc-----ccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccH----HHHHHh---------
Confidence 9999999999988886 4555555666777777777776665443322211000110 000000
Q ss_pred HHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhh
Q psy6038 294 VQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFAN 373 (661)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~ 373 (661)
+...........+.. ... ....++.||+.+
T Consensus 153 --------------------------------------~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~ 182 (501)
T KOG0029|consen 153 --------------------------------------FLSASRLMKTLLELL-----------LEG-EADKVLQWHLVN 182 (501)
T ss_pred --------------------------------------HHHHHHHHHhhHHHh-----------hhh-hhhHHHHHHHHH
Confidence 000000000000000 001 234578999999
Q ss_pred hhhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccCceeeCceEEEEEecCCc-eEEEEeCCCCCCCCe
Q psy6038 374 LEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKG-VTVKTVDPKTGQNET 452 (661)
Q Consensus 374 le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt~V~~I~~~~~g-v~V~~~~~~~~~~g~ 452 (661)
+++.+....+.++...|+++..+...+.|....+|+..++.+|+++++|+++++|.+|++.+++ +.+++.+ +.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~~~~~------~~ 256 (501)
T KOG0029|consen 183 LELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKVTVET------GD 256 (501)
T ss_pred HHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEEEEEC------CC
Confidence 9999999999999999999988876678999999999999999999999999999999999887 3455544 44
Q ss_pred EEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCce
Q psy6038 453 VYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGEL 532 (661)
Q Consensus 453 ~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~ 532 (661)
.+.||+||+|+|+++|+. +.|.|.|+||.+|.+||+++++|.++||+|.|+++||+++.+.||.+..+...++..
T Consensus 257 ~~~~d~vvvt~pl~vLk~-----~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~ 331 (501)
T KOG0029|consen 257 GYEADAVVVTVPLGVLKS-----GLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLF 331 (501)
T ss_pred eeEeeEEEEEccHHHhcc-----CceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchh
Confidence 599999999999999999 889999999999999999999999999999999999998889999988777777643
Q ss_pred EEEEe---cCCCcEEEEEeccchhhhhhccc--------------CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCC
Q psy6038 533 FLFWN---LYQAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGA 595 (661)
Q Consensus 533 ~~~~~---~~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~ 595 (661)
.||+ .+.+++|+.++.|+.+..+..++ +|+...+++|.++.+++|+.|+++.|+|+|+.++.
T Consensus 332 -~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~ 410 (501)
T KOG0029|consen 332 -TFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGS 410 (501)
T ss_pred -hhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCC
Confidence 4444 45678999999999988887776 88866789999999999999999999999999999
Q ss_pred CCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhc
Q psy6038 596 SGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILG 651 (661)
Q Consensus 596 ~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g 651 (661)
.+.+|+.+++|+. +|+|||||||+..|+||||||+.||+|||..|++.+.+
T Consensus 411 ~~~~y~~l~~pi~-----~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 411 DGDDYDRLAEPIK-----NRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ChhHHHHHhcccc-----CcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999986 68999999999999999999999999999999999873
No 6
>KOG0685|consensus
Probab=100.00 E-value=4.7e-59 Score=479.22 Aligned_cols=427 Identities=31% Similarity=0.512 Sum_probs=301.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhC-hhh
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQIN-MEL 214 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lg-l~~ 214 (661)
....+|||||||+|||+||.+|.+.|+ +|+|||+.+|+||||+|+.+.+.++|+||+|+||..+||++.++++.| +..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKL 98 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccce
Confidence 345689999999999999999997776 899999999999999999999889999999999999999999999988 322
Q ss_pred hhhcC----CCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHH
Q psy6038 215 LKIGH----QCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMN 290 (661)
Q Consensus 215 ~~~~~----~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~ 290 (661)
..... ....+..+|. .+|... -..++.+........+... +.
T Consensus 99 ~~~tg~~~~~~~~~~~~g~-----~V~~~~----~~~~~~~~~~~~~~~r~~~---~~---------------------- 144 (498)
T KOG0685|consen 99 LEVTGPAYVDNFHTRSNGE-----VVPEEL----LDELNEITVTLSDKLREAE---IA---------------------- 144 (498)
T ss_pred eccCCccccceeEEEecCc-----cCcHHH----HHHHHHHHHhhhhhccccc---cc----------------------
Confidence 21111 1112233444 333211 1222222111110000000 00
Q ss_pred HHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHH
Q psy6038 291 EILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWH 370 (661)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~ 370 (661)
.......+++... +..... ..+....++.+ ..++++.+
T Consensus 145 -----------------~~~~SvG~~ln~~----~~~~~~-~~e~~~~~k~l--------------------~~~~~~~~ 182 (498)
T KOG0685|consen 145 -----------------HDEGSVGEYLNSE----FWDELR-GPENPEIDKTL--------------------AEEILNVY 182 (498)
T ss_pred -----------------CccccHHHHHHHH----HHHHhc-cccccchhhHH--------------------HHHHHHHH
Confidence 0000001110000 000000 00000000000 01112222
Q ss_pred Hhh-hhhhcCCCCccccccCCCCCCCccccC--CceeeccchhHHHHHHhccC-----------ceeeCceEEEEEecC-
Q psy6038 371 FAN-LEFANATPLASLSLKHWDQDDDFEFTG--SHLTVKKGYACVPTALAEGL-----------DVHFNSSVTEIHYNS- 435 (661)
Q Consensus 371 ~~~-le~~~~~~l~~lsl~~~~~~~~~~~~g--~~~~v~gG~~~L~~aLa~~L-----------~I~lnt~V~~I~~~~- 435 (661)
+.. ..+..+.+++.+|+..+.... ...| .....+.||..+++-|++.+ +|++|++|.+|.+.+
T Consensus 183 ~k~e~~~~~~d~l~evs~~~~~ey~--~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~ 260 (498)
T KOG0685|consen 183 FKVECSITGADNLSEVSLRALLEYT--ECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT 260 (498)
T ss_pred HHHheeeeccCchhhhhhhhcccee--ecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC
Confidence 211 123344567777765443222 3345 56778899999999998755 366679999999986
Q ss_pred CceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccC
Q psy6038 436 KGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPA 515 (661)
Q Consensus 436 ~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~ 515 (661)
+.|.|.+.+ |+.+.||+||||+|+||||.. +.-.|.||||..|++||++++||+++||+|.|++|||..+
T Consensus 261 ~~v~l~c~d------g~v~~adhVIvTvsLGvLk~~----h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 261 GEVKLRCSD------GEVFHADHVIVTVSLGVLKEQ----HHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred CcEEEEEeC------CcEEeccEEEEEeechhhhhh----hhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 458888877 899999999999999999983 5567999999999999999999999999999999999987
Q ss_pred CCceeeeccCCC---CC-------CceEEEEecCC-CcEEEEEeccchhhhhhccc--------------CCCCCCCCCC
Q psy6038 516 ENLFGHVGSTTA---SR-------GELFLFWNLYQ-APVLLALVAGEAASILEDVS--------------IFPTNTVPQP 570 (661)
Q Consensus 516 ~~~~g~~~~~~~---~~-------g~~~~~~~~~~-~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p 570 (661)
...+-.+..+.. .| -.++.|...+. +.+|++|++|..+..|+.++ ++++..+|.|
T Consensus 331 ~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p 410 (498)
T KOG0685|consen 331 WNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKP 410 (498)
T ss_pred CceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 666655553322 11 13455666554 35999999999999999988 5566789999
Q ss_pred ceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCC--CCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHH
Q psy6038 571 KETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKD--DKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQ 648 (661)
Q Consensus 571 ~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~--~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~ 648 (661)
.++.+++|.+|||+||||||.++|+.+.+-+.++.|+.. ..+.++|.||||||++.+++|+|||++||+|+|+|+++.
T Consensus 411 ~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~ 490 (498)
T KOG0685|consen 411 KKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEH 490 (498)
T ss_pred hhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999988754 224579999999999999999999999999999999997
Q ss_pred hhc
Q psy6038 649 ILG 651 (661)
Q Consensus 649 ~~g 651 (661)
+..
T Consensus 491 y~~ 493 (498)
T KOG0685|consen 491 YES 493 (498)
T ss_pred HHh
Confidence 754
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=8.3e-56 Score=489.95 Aligned_cols=453 Identities=26% Similarity=0.408 Sum_probs=300.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-----CcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhCh
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-----IEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINM 212 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-----~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl 212 (661)
+.++|+|||||+|||+||++|++.| ++|+|||+++++|||+.|.+..++.+|+|++|++|..+|++..|++++|+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~ 83 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGS 83 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999888 89999999999999999999889999999999999888999999999998
Q ss_pred hhhhhc--------CCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhh-cccccccccCCCchhHHHHHHHHH
Q psy6038 213 ELLKIG--------HQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLS-HTLDFNYLEGKPLSLVIELQEELK 283 (661)
Q Consensus 213 ~~~~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~p~s~~i~~~~~~~ 283 (661)
...... ....++..+|. .++.+....+...++.+++...... ...+....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------------- 143 (539)
T PLN02568 84 LESDEPWECMDGFPDRPKTVAEGGF-----EVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVD--------------- 143 (539)
T ss_pred ccccCcceecccccccceEEccCCc-----CCCHHHHHHHHHHHHHHHHHhhccccccccccccc---------------
Confidence 543211 11234555665 4544333333444444443322100 000000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhh
Q psy6038 284 PVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKD 363 (661)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 363 (661)
+..+.+++.+. . .. ..+....+|+.+... ..+..+........|.....
T Consensus 144 -----~~~~~~~~~~~---~-~~-~~~~Sl~~fl~~~l~---------------------~~~~~~~~p~~~~~~~~~~~ 192 (539)
T PLN02568 144 -----FVKLAAKAARV---C-ES-GGGGSVGSFLRRGLD---------------------AYWDSVSADEQIKGYGGWSR 192 (539)
T ss_pred -----ccccchhccch---h-cc-CCCCcHHHHHHHHHH---------------------HHHhhcccchhhccccchhH
Confidence 00000000000 0 00 000011222221110 00000000000111111111
Q ss_pred ----HHHHHHHHhhhhhhcCCCCccccccCCCCCCC-ccccCCceeeccchhHHHHHHhccCc---eeeCceEEEEEecC
Q psy6038 364 ----RQLLDWHFANLEFANATPLASLSLKHWDQDDD-FEFTGSHLTVKKGYACVPTALAEGLD---VHFNSSVTEIHYNS 435 (661)
Q Consensus 364 ----~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~~-~~~~g~~~~v~gG~~~L~~aLa~~L~---I~lnt~V~~I~~~~ 435 (661)
..++.++. +++.. ...+..++...+..... ..+.|.++++++|+++|+++|++.+. |++|++|++|.+++
T Consensus 193 ~~~~~~~~~~~~-~~e~~-~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~ 270 (539)
T PLN02568 193 KLLEEAIFTMHE-NTQRT-YTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQD 270 (539)
T ss_pred HHHHHHHHHHHH-Hhhcc-ccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeC
Confidence 12222222 23322 23333333332222221 23467789999999999999999884 99999999999999
Q ss_pred CceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccC
Q psy6038 436 KGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPA 515 (661)
Q Consensus 436 ~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~ 515 (661)
++|.|++.+ |++++||+||+|+|+++|+..+ ..+.|.|.|+||+.|++||++++||.++||++.|+++||...
T Consensus 271 ~~v~V~~~d------G~~~~aD~VIvTvPl~vL~~~~-~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~ 343 (539)
T PLN02568 271 EPVKLHFAD------GSTMTADHVIVTVSLGVLKAGI-GEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSP 343 (539)
T ss_pred CeEEEEEcC------CCEEEcCEEEEcCCHHHHhhcc-ccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcc
Confidence 999998865 6789999999999999999610 001368999999999999999999999999999999999642
Q ss_pred C-----CceeeeccCCC--CCC-ceE-------EEEec-CCCcEEEEEeccchhhhhhccc--------------CCCCC
Q psy6038 516 E-----NLFGHVGSTTA--SRG-ELF-------LFWNL-YQAPVLLALVAGEAASILEDVS--------------IFPTN 565 (661)
Q Consensus 516 ~-----~~~g~~~~~~~--~~g-~~~-------~~~~~-~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~ 565 (661)
. ..++.+..... .++ ... .++.. .+.++|++|+.|+.|..++.++ +||..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~ 423 (539)
T PLN02568 344 EDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRR 423 (539)
T ss_pred cccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCc
Confidence 1 11222211110 010 111 11112 2568999999999998887776 77743
Q ss_pred C---------------------CCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCC-------CCCCCcEE
Q psy6038 566 T---------------------VPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKD-------DKDIPRLF 617 (661)
Q Consensus 566 ~---------------------~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~-------~~~~~rl~ 617 (661)
. .+.|..+++++|.+|||++|||||++||+.+.+++.|++|+.. ..+.+|||
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~ 503 (539)
T PLN02568 424 VAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLL 503 (539)
T ss_pred ccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEE
Confidence 2 2478999999999999999999999999998899999999851 12446999
Q ss_pred EecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 618 FAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 618 FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
||||||+..|+||||||++||+|||++|++.+.
T Consensus 504 FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 504 FAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred EeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999874
No 8
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.2e-54 Score=474.40 Aligned_cols=417 Identities=32% Similarity=0.562 Sum_probs=294.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCC-CCChhhHHHHhhChhhhhhc
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL-GGNPINILARQINMELLKIG 218 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~-~~~~~~~l~~~lgl~~~~~~ 218 (661)
++|+|||||+|||+||+.|.+.|++|+|||+++|+|||++|.+..|+.+|+|++|+++. ..|++..|++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888889999999999985 46789999999999765332
Q ss_pred CCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6038 219 HQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDT 298 (661)
Q Consensus 219 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (661)
....+....+.. ....+.. .+.+++. .....+...+ ..+.+....
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~-----------------------------~~~~~~~--~~~~~~~~~~---~~~~~~~~~ 125 (435)
T PLN02268 81 GDNSVLYDHDLE-SYALFDM-----------------------------DGNQVPQ--ELVTKVGETF---ERILEETEK 125 (435)
T ss_pred CCcccccccccc-ccceecC-----------------------------CCCCCCH--HHHHHHHHHH---HHHHHHHHH
Confidence 211111111110 0000000 0000000 0000111111 111111111
Q ss_pred hhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhhhhc
Q psy6038 299 LDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFAN 378 (661)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~ 378 (661)
... ...++....+|+.. + ....+ .+......++++++++..++..+
T Consensus 126 ~~~----~~~~~~s~~~~~~~------------~-----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 171 (435)
T PLN02268 126 VRD----EHEEDMSLLQAISI------------V-----------------LERHP-ELRLEGLAHEVLQWYLCRMEGWF 171 (435)
T ss_pred HHh----ccCCCcCHHHHHHH------------H-----------------hhhCc-ccccchHHHHHHHHHHHHHHHHh
Confidence 000 00011111122110 0 00000 00000112344555544444445
Q ss_pred CCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCE
Q psy6038 379 ATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDR 458 (661)
Q Consensus 379 ~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~ 458 (661)
+.+.+.+|+..|.+.. .+.|.+.++++||++|+++|+++++|++|++|++|.+.++++.|++.+ |+++.||+
T Consensus 172 ~~~~~~ls~~~~~~~~--~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~------g~~~~ad~ 243 (435)
T PLN02268 172 AADADTISLKSWDQEE--LLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVED------GTTFVADA 243 (435)
T ss_pred CCChHhCchhhcCCcc--ccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECC------CcEEEcCE
Confidence 6677888887776533 235667889999999999999999999999999999999998887755 67899999
Q ss_pred EEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEe-
Q psy6038 459 VLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWN- 537 (661)
Q Consensus 459 VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~- 537 (661)
||+|+|+++|++ ..+.|.|+||++|+++|++++||..+||++.|+++||+. ...+|.+..... + ...+.+
T Consensus 244 VIva~P~~~l~~-----~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~-~~~~g~~~~~~~--~-~~~~~~~ 314 (435)
T PLN02268 244 AIIAVPLGVLKA-----NIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN-VEFLGVVAPTSY--G-CSYFLNL 314 (435)
T ss_pred EEEecCHHHHhc-----CcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC-CceeeccCCCCC--C-ceEEEec
Confidence 999999999987 458899999999999999999999999999999999975 356665543211 1 112222
Q ss_pred --cCCCcEEEEEeccchhhhhhccc--------------CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchh
Q psy6038 538 --LYQAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYD 601 (661)
Q Consensus 538 --~~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~ 601 (661)
..+.++|++|+.|..+..+..++ +|+. .++|..+.+++|..|||++|+|+++.||+...+++
T Consensus 315 ~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~--~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~ 392 (435)
T PLN02268 315 HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD--ATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYE 392 (435)
T ss_pred ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC--CCCccEEEecccCCCCCCCccCCCCCCCCCHHHHH
Confidence 23567999999998877666554 6764 46789999999999999999999999998878889
Q ss_pred hhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 602 TLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 602 ~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
.|++|+ +|||||||||+..|+||||||++||+|||++|++.++
T Consensus 393 ~l~~p~------~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l~ 435 (435)
T PLN02268 393 RLRAPV------DNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRLL 435 (435)
T ss_pred HHhCCC------CCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhhC
Confidence 999987 6899999999999999999999999999999998763
No 9
>PLN02676 polyamine oxidase
Probab=100.00 E-value=5.6e-53 Score=464.60 Aligned_cols=413 Identities=30% Similarity=0.516 Sum_probs=288.4
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCCCCCceeccCCCccccccccEEEeC---CCCChhhHHHHhhC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTG---LGGNPINILARQIN 211 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~---~~~~~~~~l~~~lg 211 (661)
....++|+|||||++||+||++|++.|+ +|+|+|+++++|||+.+.+.+|..+|+|++|+++ ...|++..+++++|
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 3456799999999999999999999998 6999999999999999998889999999999986 45789999999999
Q ss_pred hhhhhhcC---CCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHH
Q psy6038 212 MELLKIGH---QCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSR 288 (661)
Q Consensus 212 l~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~ 288 (661)
++...... ...++..+|. ..+. ... ..+ .+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~g~-----~~~~---~~~-~~~----------------------------------~~~~~~ 139 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQDGG-----LYPK---KVV-QKS----------------------------------MKVADA 139 (487)
T ss_pred CceeecCccccceeEECCCCC-----CCCH---HHH-HHH----------------------------------HHHHHH
Confidence 97653221 1234444555 2221 000 000 001111
Q ss_pred HHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHH
Q psy6038 289 MNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLD 368 (661)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~ 368 (661)
+....+.+... .. ....++.+ .... ..+.+.+ ...... ..+.
T Consensus 140 ~~~~~~~~~~~---~~-~~~~~~~s--~~~~--------------------~~~~~~~-----------~~~~~~-~~~~ 181 (487)
T PLN02676 140 SDEFGENLSIS---LS-AKKAVDIS--ILTA--------------------QRLFGQV-----------PKTPLE-MVID 181 (487)
T ss_pred HHHHHHHHHHh---hc-ccCCCCcc--HHHH--------------------HHHHhhC-----------CCCHHH-HHHH
Confidence 11111111100 00 00000000 0000 0000000 000000 1122
Q ss_pred HHHhhhhhhcCCCCccccccCCCCCCCc-cccCCceee--ccchhHHHHHHhccC-----------ceeeCceEEEEEec
Q psy6038 369 WHFANLEFANATPLASLSLKHWDQDDDF-EFTGSHLTV--KKGYACVPTALAEGL-----------DVHFNSSVTEIHYN 434 (661)
Q Consensus 369 ~~~~~le~~~~~~l~~lsl~~~~~~~~~-~~~g~~~~v--~gG~~~L~~aLa~~L-----------~I~lnt~V~~I~~~ 434 (661)
++.. .+..+.+...+|+.++.....+ .+.+..+++ ++||++|++.|++.+ +|+||++|++|+++
T Consensus 182 ~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~ 259 (487)
T PLN02676 182 YYNY--DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS 259 (487)
T ss_pred HHhc--cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc
Confidence 2211 1224556666776654332222 233445555 689999999999854 49999999999999
Q ss_pred CCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEcccccccc
Q psy6038 435 SKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP 514 (661)
Q Consensus 435 ~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~ 514 (661)
+++|.|++.+ |++++||+||+|+|+++|++ +.|.|+|+||++|+++|++++||.++||++.|+++||+.
T Consensus 260 ~~gV~V~~~~------G~~~~a~~VIvtvPl~vLk~-----~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 260 KNGVTVKTED------GSVYRAKYVIVSVSLGVLQS-----DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPS 328 (487)
T ss_pred CCcEEEEECC------CCEEEeCEEEEccChHHhcc-----CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence 9999998865 78999999999999999997 669999999999999999999999999999999999987
Q ss_pred CCCceeeeccCCCCCCceEEEE--e--cCCCcEEEEEeccchhhhhhccc--------------CCCCCCCCCCceEEEe
Q psy6038 515 AENLFGHVGSTTASRGELFLFW--N--LYQAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVT 576 (661)
Q Consensus 515 ~~~~~g~~~~~~~~~g~~~~~~--~--~~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p~~~~~~ 576 (661)
+......+.... .++....++ + .++.++|++++.|+.+..++.++ +||. .++.|..+..+
T Consensus 329 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~-~~~~p~~~~~~ 406 (487)
T PLN02676 329 GPGTEFFLYAHE-RRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP-NIPEATDILVP 406 (487)
T ss_pred CCCceeeeeecc-ccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC-CCCCcceEEec
Confidence 322111111111 111111111 1 12456999999998887776654 7875 46789999999
Q ss_pred cCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 577 RWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 577 ~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
+|.+|||++|+|++++||....+++.|++|+ +|||||||||+..|+||||||++||+|||++|++.+.
T Consensus 407 ~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~------gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 407 RWWSNRFFKGSYSNWPIGVSRYEFDQIRAPV------GRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred ccCCCCCCCcccCCCCCCCChhHHHHHhCCC------CceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888889999997 7999999999999999999999999999999999874
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=393.69 Aligned_cols=421 Identities=24% Similarity=0.334 Sum_probs=275.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhh
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLK 216 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 216 (661)
.+..+|||||||+|||+||+.|.+.||+|+|+|+++++|||+.+.+..+...|+|++++.. ..+....+++++|++..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCc
Confidence 5678999999999999999999999999999999999999999999888889999999955 566777888999998654
Q ss_pred hcCC-CcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6038 217 IGHQ-CPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQ 295 (661)
Q Consensus 217 ~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~ 295 (661)
.-.. ..+....+. .+............+ .....++..+
T Consensus 84 fi~~g~~~~~~~~~-------~~~~p~~~~~~~~d~----------------------------------~~~~~~~~~~ 122 (450)
T COG1231 84 FIRDGDNVIGYVGS-------SKSTPKRSLTAAADV----------------------------------RGLVAELEAK 122 (450)
T ss_pred eeccCccccccccc-------ccccchhccchhhhh----------------------------------cchhhhhhhh
Confidence 3211 011100111 000000000000000 0000000000
Q ss_pred hhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccCh-hhHHHHHHHHhhh
Q psy6038 296 LDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSV-KDRQLLDWHFANL 374 (661)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~ll~~~~~~l 374 (661)
.. ..........+. ..+. .......| . ...+..+...+...+...+ ...+++..+-..
T Consensus 123 a~-~~~~~~~~~t~~--~~e~--------~~~~~~~W-~--------~~~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~- 181 (450)
T COG1231 123 AR-SAGELDPGLTPE--DREL--------DLESLAAW-K--------TSSLRGLSRDPGARVSPGPIEPGDVSLLHDAL- 181 (450)
T ss_pred hh-cccccCcccCcc--hhhh--------hhHHHHhh-h--------hccccccccCccceeccCCCCcccccchhhhh-
Confidence 00 000000000000 0000 00011111 0 0000000000000000000 000000000000
Q ss_pred hhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccC--ceeeCceEEEEEecCCceEEEEeCCCCCCCCe
Q psy6038 375 EFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452 (661)
Q Consensus 375 e~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L--~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~ 452 (661)
...+....++...++....++...|||++|++++++.| .|+++++|.+|.+.+++|+|++.+ ..
T Consensus 182 --------~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~------~~ 247 (450)
T COG1231 182 --------PLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADD------VG 247 (450)
T ss_pred --------hhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCC------cc
Confidence 00001111122223333445556699999999999988 699999999999999999999865 57
Q ss_pred EEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCce
Q psy6038 453 VYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGEL 532 (661)
Q Consensus 453 ~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~ 532 (661)
++.+|+||||+|+.+|.+ |+|.|++|+.++++++.+.|+..+|+.+.|++|||+++...-|..-++. ...
T Consensus 248 ~~~ad~~i~tiPl~~l~q-------I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~---~~~ 317 (450)
T COG1231 248 QYVADYVLVTIPLAILGQ-------IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDL---GLG 317 (450)
T ss_pred eEEecEEEEecCHHHHhh-------cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecC---Ccc
Confidence 899999999999999999 9999999999999999999999999999999999998763334433322 234
Q ss_pred EEEEecC----CCcEEEE-Eeccchhhhhhccc--------------CCCCCCCCCCceE-EEecCCCCCCCCcccCccC
Q psy6038 533 FLFWNLY----QAPVLLA-LVAGEAASILEDVS--------------IFPTNTVPQPKET-VVTRWKADPFAKGSYSFVA 592 (661)
Q Consensus 533 ~~~~~~~----~~~vL~~-~~~g~~a~~~~~~~--------------~fg~~~~~~p~~~-~~~~W~~dp~~~Gsys~~~ 592 (661)
+++++.. +..||++ |..|+.|..+..++ +||+.. ..|.++ ...+|++|||+.|+|.++.
T Consensus 318 ~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a-~~~f~~~~~~~W~~dpwt~G~~aa~~ 396 (450)
T COG1231 318 FISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEA-ADPFDYGASVDWSKDPWTLGGTAAYP 396 (450)
T ss_pred eEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhh-ccccccceeeecccCCcCCccccccC
Confidence 4555543 4568888 66798888777766 788543 455555 9999999999999888999
Q ss_pred CCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhc
Q psy6038 593 VGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILG 651 (661)
Q Consensus 593 ~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g 651 (661)
+|+..+.|..+.+|. +||||||++++..|+||++||++||+|||.+|...+..
T Consensus 397 ~g~~~~~~~~l~~p~------gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 397 PGQRTKLYPTLPAPH------GRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred CcccccccccccCCC------CceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 999999999998875 89999995555669999999999999999999987643
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=5.6e-37 Score=335.60 Aligned_cols=224 Identities=35% Similarity=0.579 Sum_probs=179.0
Q ss_pred eccchhHHHHHHhc--cCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCC
Q psy6038 405 VKKGYACVPTALAE--GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNP 482 (661)
Q Consensus 405 v~gG~~~L~~aLa~--~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P 482 (661)
..|++..+...+.+ +.+|++|++|++|+.++++|.|++.+ |++++||+||+|+|+++|++ |.|.|
T Consensus 207 ~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~------g~~~~ad~VI~a~p~~~l~~-------i~~~p 273 (450)
T PF01593_consen 207 GMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTED------GETIEADAVISAVPPSVLKN-------ILLLP 273 (450)
T ss_dssp ETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETT------SSEEEESEEEE-S-HHHHHT-------SEEES
T ss_pred cccchhHHHHHHHhhcCceeecCCcceecccccccccccccc------ceEEecceeeecCchhhhhh-------hhhcc
Confidence 33444555555554 34899999999999999999999876 67999999999999999998 88999
Q ss_pred CCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEec-C---CCcEEEEEeccchhhhhhc
Q psy6038 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNL-Y---QAPVLLALVAGEAASILED 558 (661)
Q Consensus 483 ~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~-~---~~~vL~~~~~g~~a~~~~~ 558 (661)
++|..+++++++++++++.||++.|+++||..+...+|.+.++.......+..+.. + +..+|+.++.+..+..+..
T Consensus 274 ~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 353 (450)
T PF01593_consen 274 PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDD 353 (450)
T ss_dssp TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTT
T ss_pred cccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcc
Confidence 99999999999999999999999999999998655677776554222222222222 1 3568999998887655544
Q ss_pred cc--------------CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEeccccc
Q psy6038 559 VS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTI 624 (661)
Q Consensus 559 ~~--------------~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~ 624 (661)
++ +|+....++|.++.+++|..++|.+|+|++..++.....++.+..|+. ++||||||||+
T Consensus 354 ~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~aG~~~~ 428 (450)
T PF01593_consen 354 LSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPID-----PGLYFAGDWTS 428 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBT-----TTEEE-SGGGS
T ss_pred cchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcc-----eEEEEeecccC
Confidence 44 677545688899999999999999999999999876556788888873 69999999999
Q ss_pred CcCCcchhHHHHHHHHHHHHHH
Q psy6038 625 RNYPATVHGAFLSGLKEGGHIV 646 (661)
Q Consensus 625 ~~~~gtv~GA~~SG~raA~~i~ 646 (661)
..++|+|+||+.||.+||++|+
T Consensus 429 ~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 429 PGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhC
Confidence 9888999999999999999986
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=3.1e-32 Score=301.32 Aligned_cols=423 Identities=16% Similarity=0.212 Sum_probs=242.6
Q ss_pred CcEEEEccChHHHHHHHHHHHC------CCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQF------GIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~------g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
++|+|||||+|||+||++|++. |++|+|||+++++|||++|.+..|+.+|+|++++++.. ..+..|++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~-~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARN-EHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCC-HHHHHHHHHcCCc
Confidence 4799999999999999999986 37999999999999999999998999999999997654 3466899999987
Q ss_pred hhhhcCC--CcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHH
Q psy6038 214 LLKIGHQ--CPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNE 291 (661)
Q Consensus 214 ~~~~~~~--~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~ 291 (661)
....... ..++...|.. .++|.... .+.|.++.-.....+.....++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~p~~~~--------------------------~~~p~~~~~~~~~~~~~~~~~~~~ 131 (463)
T PRK12416 81 EEMVYNETGISYIYSDNTL---HPIPSDTI--------------------------FGIPMSVESLFSSTLVSTKGKIVA 131 (463)
T ss_pred cceecCCCCceEEEECCeE---EECCCCCe--------------------------ecCCCChHHhhcCCcCCHHHHHHh
Confidence 5433211 2232223331 01221100 000000000000000000000100
Q ss_pred HHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHH
Q psy6038 292 ILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHF 371 (661)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~ 371 (661)
+.+.+. .. ....++....+|+.+.....+. ...+...+..+...++..+........++.+
T Consensus 132 ~~~~~~----~~-~~~~~~~sv~~~l~~~~~~~~~------------~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~-- 192 (463)
T PRK12416 132 LKDFIT----KN-KEFTKDTSLALFLESFLGKELV------------ERQIAPVLSGVYSGKLNELTMASTLPYLLDY-- 192 (463)
T ss_pred hhhhcc----CC-CCCCCCCCHHHHHHHhcCHHHH------------HHHHHHHhcccccCCcccccHHHhhHHHHHH--
Confidence 111000 00 0001112234555433222211 0112333333333333333221111111111
Q ss_pred hhhhhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccC---ceeeCceEEEEEecCCceEEEEeCCCCC
Q psy6038 372 ANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL---DVHFNSSVTEIHYNSKGVTVKTVDPKTG 448 (661)
Q Consensus 372 ~~le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L---~I~lnt~V~~I~~~~~gv~V~~~~~~~~ 448 (661)
+...+.-+..+.... .. ..........++++|+++|+++|++.+ +|++|++|++|+++++++.|++.+
T Consensus 193 ---~~~~~s~~~~~~~~~-~~-~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~---- 263 (463)
T PRK12416 193 ---KNKYGSIIKGFEENK-KQ-FQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFAN---- 263 (463)
T ss_pred ---HHhcCcHHHHHHHhh-hc-cCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECC----
Confidence 101111000000000 00 000001234678999999999999988 499999999999998888877654
Q ss_pred CCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCC
Q psy6038 449 QNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTAS 528 (661)
Q Consensus 449 ~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~ 528 (661)
|+++.||+||+|+|+.++.. +.+.|+++. .++++.+.++.+|++.|++++|....+.||++.+....
T Consensus 264 --g~~~~ad~VI~a~p~~~~~~-------ll~~~~l~~----~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~ 330 (463)
T PRK12416 264 --HESIQADYVVLAAPHDIAET-------LLQSNELNE----QFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSD 330 (463)
T ss_pred --CCEEEeCEEEECCCHHHHHh-------hcCCcchhH----HHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCC
Confidence 67899999999999999988 778777754 46788899999999999999886544568887654322
Q ss_pred CCceEEEEec-------CCCcEEEEEec---cchhhhhhccc--------------CCCCCCCCCCceEEEecCCCCCCC
Q psy6038 529 RGELFLFWNL-------YQAPVLLALVA---GEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFA 584 (661)
Q Consensus 529 ~g~~~~~~~~-------~~~~vL~~~~~---g~~a~~~~~~~--------------~fg~~~~~~p~~~~~~~W~~dp~~ 584 (661)
.......|.. .+.++|+.+.. |..+..+..++ +||.. ..|..+.+++|..
T Consensus 331 ~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~---- 404 (463)
T PRK12416 331 LHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKD---- 404 (463)
T ss_pred CeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccc----
Confidence 2111112221 23456666443 23344333332 78743 4788999999974
Q ss_pred CcccCccCCCCCCc---chhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 585 KGSYSFVAVGASGS---DYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 585 ~Gsys~~~~g~~~~---~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
++....+|.... ....+..+ .++|||||+++... .|+||+.||.++|++|++.+.
T Consensus 405 --a~P~y~~~~~~~~~~~~~~l~~~------~~~l~~aG~~~~g~---~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 405 --LMPKYHLEHNQAVQSLQEKMMNL------YPNIYLAGASYYGV---GIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred --cCCCcCcCHHHHHHHHHHHHHhh------CCCeEEeccccccc---cHHHHHHHHHHHHHHHHHHhh
Confidence 232222332110 01123222 37999999998743 599999999999999998753
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=4.2e-32 Score=300.55 Aligned_cols=421 Identities=19% Similarity=0.252 Sum_probs=249.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhh
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMEL 214 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~ 214 (661)
.++|+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+.+|+|++++++...+ +..+++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~-~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKS-APDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChH-HHHHHHHcCCCc
Confidence 46899999999999999999999 9999999999999999999999999999999999876543 778999999865
Q ss_pred hhhc--CCCcEEecC-CCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHH
Q psy6038 215 LKIG--HQCPLYQSS-AENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNE 291 (661)
Q Consensus 215 ~~~~--~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~ 291 (661)
.... ....++..+ |.. ..+|.....+ +.. ...++ .+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~g~~---~~~p~~~~~~--------------~~~---------~~~~~----~~~~~~------- 123 (462)
T TIGR00562 81 VLVSDATGQRYVLVNRGKL---MPVPTKIAPF--------------VKT---------GLFSL----GGKLRA------- 123 (462)
T ss_pred ccccCCCCceEEEECCCce---ecCCCChHHH--------------hcC---------CCCCc----hhhHHh-------
Confidence 4332 222333333 541 1233221100 000 00000 000000
Q ss_pred HHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHH
Q psy6038 292 ILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHF 371 (661)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~ 371 (661)
..+.. . ......+....+|+.+.....+.. ..+...+......++..+.+......+..
T Consensus 124 ~~~~~---~---~~~~~~d~s~~e~l~~~~g~~~~~------------~~~~p~~~~~~~~~~~~ls~~~~~~~~~~--- 182 (462)
T TIGR00562 124 GMDFI---R---PASPGKDESVEEFVRRRFGDEVVE------------NLIEPLLSGIYAGDPSKLSLKSTFPKFYQ--- 182 (462)
T ss_pred hhhhc---c---CCCCCCCcCHHHHHHHhcCHHHHH------------HHHHHHhcccccCCHHHhhHHHHhHHHHH---
Confidence 00000 0 000111122345554333222111 01122222222222111111000000000
Q ss_pred hhhhhhcCCCC----ccccccCCCCCCCc-cccCC-ceeeccchhHHHHHHhccC---ceeeCceEEEEEecCCceEEEE
Q psy6038 372 ANLEFANATPL----ASLSLKHWDQDDDF-EFTGS-HLTVKKGYACVPTALAEGL---DVHFNSSVTEIHYNSKGVTVKT 442 (661)
Q Consensus 372 ~~le~~~~~~l----~~lsl~~~~~~~~~-~~~g~-~~~v~gG~~~L~~aLa~~L---~I~lnt~V~~I~~~~~gv~V~~ 442 (661)
.+...+.-. .............+ ...|. ...+++|+++|+++|++.+ +|++|++|++|.++++++.|++
T Consensus 183 --~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~ 260 (462)
T TIGR00562 183 --TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLEL 260 (462)
T ss_pred --HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEE
Confidence 000000000 00000000000001 01122 4678999999999999877 5999999999999988888876
Q ss_pred eCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeee
Q psy6038 443 VDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHV 522 (661)
Q Consensus 443 ~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~ 522 (661)
.+ |+++.||+||+|+|+..+.. +.|++|+.+.++++++.|+++.+|.+.|++++|+.....||++
T Consensus 261 ~~------g~~~~ad~VI~t~P~~~~~~---------ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l 325 (462)
T TIGR00562 261 DN------GVTVETDSVVVTAPHKAAAG---------LLSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFL 325 (462)
T ss_pred CC------CcEEEcCEEEECCCHHHHHH---------HhcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEE
Confidence 44 67899999999999999988 5588999999999999999999999999999998654557776
Q ss_pred ccCCCCCCceEEEEec--------CCCcEEEEEeccchhhhhhccc--------------CCCCCCCCCCceEEEecCCC
Q psy6038 523 GSTTASRGELFLFWNL--------YQAPVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKA 580 (661)
Q Consensus 523 ~~~~~~~g~~~~~~~~--------~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~~p~~~~~~~W~~ 580 (661)
.+..........+++. .+..+|++++.|..+..+..++ +|+-. .+|....+++|.
T Consensus 326 ~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~- 402 (462)
T TIGR00562 326 ISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWH- 402 (462)
T ss_pred ccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEcc-
Confidence 5433222222223321 1234788888775443332222 56532 248899999996
Q ss_pred CCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHh
Q psy6038 581 DPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649 (661)
Q Consensus 581 dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~ 649 (661)
.+|..+.+|... ..+.+.+-+. ...++|++||+++.. ..|++|+.||.++|++|+..+
T Consensus 403 -----~a~P~~~~g~~~-~~~~i~~~l~--~~~~~l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 403 -----RAIPQYHVGHDQ-RLKEARELLE--SAYPGVFLTGNSFEG---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred -----ccCCCCCCChHH-HHHHHHHHHH--hhCCCEEEeccccCC---CcHHHHHHHHHHHHHHHHHhh
Confidence 356555566421 1222111010 112689999999752 379999999999999998875
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=2e-31 Score=294.25 Aligned_cols=421 Identities=19% Similarity=0.271 Sum_probs=233.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhhh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKI 217 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~ 217 (661)
++|+|||||+|||+||+.|++.| ++|+|||+++++|||++|.+.+|.++|+|++++++.+. .+..+++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~-~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKP-SAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcH-HHHHHHHHcCCcccee
Confidence 47999999999999999999988 89999999999999999999999999999998876543 4778999999874432
Q ss_pred cC--CCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6038 218 GH--QCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQ 295 (661)
Q Consensus 218 ~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~ 295 (661)
.. ....+..+|.. ..+|... +..... ....++. ...++ .. ..+ ..
T Consensus 80 ~~~~~~~~~~~~g~~---~~~p~~~--~~~~~~----~~~~~~~---------~~~~~----~~-------~~~---~~- 126 (451)
T PRK11883 80 ANTTGQSYIYVNGKL---HPIPPGT--VMGIPT----SIAPFLF---------AGLVS----PI-------GKL---RA- 126 (451)
T ss_pred cCCCCcceEEECCeE---EECCCCC--eeccCC----Cchhhhc---------CCCCC----HH-------HHH---Hh-
Confidence 21 23344445541 1122110 000000 0000000 00000 00 000 00
Q ss_pred hhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhh
Q psy6038 296 LDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLE 375 (661)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le 375 (661)
.... ........++....+|+.+....... + .-+...+..+...++..+.... .+ ..+...+
T Consensus 127 ~~~~-~~~~~~~~~~~s~~e~l~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~s~~~----~~-~~~~~~~ 188 (451)
T PRK11883 127 AADL-RPPRWKPGQDQSVGAFFRRRFGDEVV---E---------NLIEPLLSGIYAGDIDTLSLRA----TF-PQLAQAE 188 (451)
T ss_pred hCcc-cCCCCCCCCCcCHHHHHHHhccHHHH---H---------HHHHHhhceeecCChHHccHHH----hH-HHHHHHH
Confidence 0000 00000011122234554432211110 0 0112222222222222111100 00 0011111
Q ss_pred hhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccC---ceeeCceEEEEEecCCceEEEEeCCCCCCCCe
Q psy6038 376 FANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL---DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452 (661)
Q Consensus 376 ~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L---~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~ 452 (661)
...+..+..+. ........ .......++++|+++|+++|++.+ +|++|++|++|+.+++++.|++.+ |+
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~------g~ 260 (451)
T PRK11883 189 DKYGSLLRGMR-KALPKEKK-KTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSN------GG 260 (451)
T ss_pred HhcCcHHHHHH-hhccccCC-CCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECC------CC
Confidence 11110000000 00000000 011234579999999999999877 499999999999998888777755 67
Q ss_pred EEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCce
Q psy6038 453 VYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGEL 532 (661)
Q Consensus 453 ~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~ 532 (661)
++.||+||+|+|+.++++ +.+. +...++++++.|+++.||++.|+++|+.. ...+|.+..........
T Consensus 261 ~~~~d~vI~a~p~~~~~~-------l~~~----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (451)
T PRK11883 261 EIEADAVIVAVPHPVLPS-------LFVA----PPAFALFKTIPSTSVATVALAFPESATNL-PDGTGFLVARNSDYTIT 328 (451)
T ss_pred EEEcCEEEECCCHHHHHH-------hccC----hhHHHHHhCCCCCceEEEEEEeccccCCC-CCceEEEecCCCCCcEE
Confidence 899999999999999998 4333 23578899999999999999999997432 22344443211111111
Q ss_pred EEEEecC-------CCcEEEEEecc-chhhhh-------------hccc-CCCCCCCCCCceEEEecCCCCCCCCcccCc
Q psy6038 533 FLFWNLY-------QAPVLLALVAG-EAASIL-------------EDVS-IFPTNTVPQPKETVVTRWKADPFAKGSYSF 590 (661)
Q Consensus 533 ~~~~~~~-------~~~vL~~~~~g-~~a~~~-------------~~~~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~ 590 (661)
...|+.. ....++.++.| ..+... +.+. +||.. .+|....+++|.. +|+.
T Consensus 329 ~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~------a~p~ 400 (451)
T PRK11883 329 ACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKE------AMPQ 400 (451)
T ss_pred EEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCc------cCCC
Confidence 2223211 12344444333 222111 1111 67642 4677899999974 5766
Q ss_pred cCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHH
Q psy6038 591 VAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVD 647 (661)
Q Consensus 591 ~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~ 647 (661)
+.+|.. .....+..++. . .++|||||+++. .+.|+||+.||.++|++|++
T Consensus 401 ~~~~~~-~~~~~l~~~l~--~-~~~l~~aG~~~~---g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 401 YGVGHI-ERVAELRAGLP--H-YPGLYVAGASFE---GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCccHH-HHHHHHHHhhh--h-CCCEEEECcccC---CccHHHHHHHHHHHHHHHHh
Confidence 666642 22233444442 1 358999999985 34699999999999999975
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.2e-30 Score=291.43 Aligned_cols=432 Identities=19% Similarity=0.243 Sum_probs=242.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhh
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELL 215 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~ 215 (661)
...++|+|||||+|||+||++|+++ |++|+|||+++++|||+.|.+.+|+++|.|++++.... ..+..+.+. |++..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~-~~~~~l~~~-gl~~~ 87 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSD-PELTSAVDS-GLRDD 87 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCc-HHHHHHHHc-CChhh
Confidence 3456899999999999999999999 99999999999999999999999999999999997542 223344444 76533
Q ss_pred hhc-C--CCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHH
Q psy6038 216 KIG-H--QCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEI 292 (661)
Q Consensus 216 ~~~-~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~ 292 (661)
... . ...++..+|+. ..+|...... +. ...++. .+.+. ..
T Consensus 88 ~~~~~~~~~~~~~~~g~~---~~~p~~~~~~--------------~~---------~~~~~~----~~~~~-------~~ 130 (496)
T PLN02576 88 LVFPDPQAPRYVVWNGKL---RPLPSNPIDL--------------PT---------FDLLSA----PGKIR-------AG 130 (496)
T ss_pred eecCCCCceEEEEECCEE---EEcCCChHHh--------------cC---------cCcCCh----hHHHH-------Hh
Confidence 221 1 11223335541 1223221100 00 000000 00000 00
Q ss_pred HHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHh
Q psy6038 293 LVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFA 372 (661)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~ 372 (661)
..... ... .....++....+|+.+.....+.. ..++..+..+...++..+........+..
T Consensus 131 ~~~~~-~~~--~~~~~~~~sv~~~l~~~~g~~~~~------------~~~~p~~~~~~~~~~~~lS~~~~~~~~~~---- 191 (496)
T PLN02576 131 LGAFG-WKR--PPPPGREESVGEFVRRHLGDEVFE------------RLIDPFVSGVYAGDPSSLSMKAAFPKLWN---- 191 (496)
T ss_pred HHHhh-ccC--CCCCCCCCcHHHHHHHhcCHHHHH------------HHHHHHhCceecCCHHHHhHHHHhHHHHH----
Confidence 00000 000 000012223355655433222211 11222222222222222111100011010
Q ss_pred hhhhhcCCCC----cccc-----ccCCCCCCCc--cccCCceeeccchhHHHHHHhccCc---eeeCceEEEEEecCCc-
Q psy6038 373 NLEFANATPL----ASLS-----LKHWDQDDDF--EFTGSHLTVKKGYACVPTALAEGLD---VHFNSSVTEIHYNSKG- 437 (661)
Q Consensus 373 ~le~~~~~~l----~~ls-----l~~~~~~~~~--~~~g~~~~v~gG~~~L~~aLa~~L~---I~lnt~V~~I~~~~~g- 437 (661)
++-..+.-+ .... ......+... ......+.+++|+++|+++|++.+. |++|++|++|++.+++
T Consensus 192 -~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~ 270 (496)
T PLN02576 192 -LEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGG 270 (496)
T ss_pred -HHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCc
Confidence 000000000 0000 0000000000 0112346789999999999999874 9999999999998886
Q ss_pred eEEEEeCCCCCCCC-eEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEcccccccc--
Q psy6038 438 VTVKTVDPKTGQNE-TVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDP-- 514 (661)
Q Consensus 438 v~V~~~~~~~~~~g-~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~-- 514 (661)
+.|++... +| +++.||+||+|+|+.+++. +. +++++.+.++++++.|.++.+|++.|+++||..
T Consensus 271 ~~v~~~~~----~g~~~~~ad~VI~a~P~~~l~~-------ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~ 337 (496)
T PLN02576 271 YSLTYDTP----EGKVNVTAKAVVMTAPLYVVSE-------ML--RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRER 337 (496)
T ss_pred EEEEEecC----CCceeEEeCEEEECCCHHHHHH-------Hh--cccCHHHHHHhccCCCCceEEEEEEEchHHccccc
Confidence 66655421 13 4799999999999999998 43 346677889999999999999999999999986
Q ss_pred ----CCCceeeeccCCCCCCceEEEEec--------CCCcEEEEEeccchhhhhhccc--------------CCCCCCCC
Q psy6038 515 ----AENLFGHVGSTTASRGELFLFWNL--------YQAPVLLALVAGEAASILEDVS--------------IFPTNTVP 568 (661)
Q Consensus 515 ----~~~~~g~~~~~~~~~g~~~~~~~~--------~~~~vL~~~~~g~~a~~~~~~~--------------~fg~~~~~ 568 (661)
....||.+.+.......+...+.. .+..+++.|+.|..+..+..++ ++|....+
T Consensus 338 ~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~ 417 (496)
T PLN02576 338 LIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAP 417 (496)
T ss_pred ccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 223566554322111112122211 1234677788776554443332 67754445
Q ss_pred CCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHH
Q psy6038 569 QPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQ 648 (661)
Q Consensus 569 ~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~ 648 (661)
.|....+++|.. ++..+.+|... ..+.+.+.+.. ...++|+|||+++.. ..++||+.||.++|++|++.
T Consensus 418 ~p~~~~~~~w~~------a~P~~~~g~~~-~~~~~~~~l~~-~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 418 PPKVVGVRVWPK------AIPQYLLGHLD-VLEAAEKMEKD-LGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISY 486 (496)
T ss_pred CCcEEEEeEcCc------ccCCCCcCHHH-HHHHHHHHHHh-cCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHH
Confidence 677788999973 34434444321 11222222210 001589999999974 48999999999999999988
Q ss_pred hhc
Q psy6038 649 ILG 651 (661)
Q Consensus 649 ~~g 651 (661)
+..
T Consensus 487 ~~~ 489 (496)
T PLN02576 487 LES 489 (496)
T ss_pred Hhh
Confidence 653
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=1e-29 Score=280.39 Aligned_cols=212 Identities=23% Similarity=0.249 Sum_probs=135.7
Q ss_pred hHHHHHHhc-----cCceeeCceEEEEEecCCc-e-EEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCC
Q psy6038 410 ACVPTALAE-----GLDVHFNSSVTEIHYNSKG-V-TVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNP 482 (661)
Q Consensus 410 ~~L~~aLa~-----~L~I~lnt~V~~I~~~~~g-v-~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P 482 (661)
+.++++|.+ +.+|++|++|++|...+++ + .|++.+++. ++..++.||+||+|+|+..+.+ + .|
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~-~~~~~~~a~~VI~a~p~~~~~~-------l--L~ 282 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEG-QRRFEVTADAYVSAMPVDIFKL-------L--LP 282 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCC-CceeEEECCEEEEcCCHHHHHh-------h--Cc
Confidence 444454443 4589999999999876555 3 255543110 0011799999999999999877 3 23
Q ss_pred C-CC-HHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEE----Ee-cCCCcEEEEEeccchhhh
Q psy6038 483 P-LP-DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLF----WN-LYQAPVLLALVAGEAASI 555 (661)
Q Consensus 483 ~-Lp-~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~----~~-~~~~~vL~~~~~g~~a~~ 555 (661)
. ++ ....+.++++.++++.||++.|++++|... +.+..........+.+ +. ......|++++.+... .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~-~ 357 (453)
T TIGR02731 283 QPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD----HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAA-D 357 (453)
T ss_pred hhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC----ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChh-h
Confidence 2 22 234556677788999999999999998653 1111111111100000 01 1112366665544322 2
Q ss_pred hhccc--------------CCCCCC-CCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEec
Q psy6038 556 LEDVS--------------IFPTNT-VPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAG 620 (661)
Q Consensus 556 ~~~~~--------------~fg~~~-~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAG 620 (661)
+..++ +||... ...+.+...++|..+||+. | ...||. ....+.+.+|+ ++|||||
T Consensus 358 ~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~------~~l~~AG 427 (453)
T TIGR02731 358 WIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPI------PNFFLAG 427 (453)
T ss_pred hhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCcc------CCEEEee
Confidence 21121 787521 2357788899999999994 5 345674 34556667665 7999999
Q ss_pred ccccCcCCcchhHHHHHHHHHHHHHH
Q psy6038 621 EHTIRNYPATVHGAFLSGLKEGGHIV 646 (661)
Q Consensus 621 e~t~~~~~gtv~GA~~SG~raA~~i~ 646 (661)
++|+..|+|+||||++||.|||++|+
T Consensus 428 ~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 428 DYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred hhccCcccccHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 17
>PLN02612 phytoene desaturase
Probab=99.97 E-value=4.7e-29 Score=279.92 Aligned_cols=443 Identities=20% Similarity=0.246 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCC-Cccc
Q psy6038 109 LVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKK-SNYV 187 (661)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~-~~~~ 187 (661)
.+.....|+....... +.-. .+.....++|+|||||++||+||++|.+.|++|+|+|+++++||++.+++. +|+.
T Consensus 67 ~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~ 142 (567)
T PLN02612 67 ELENTVNFLEAAALSA-SFRS---APRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDW 142 (567)
T ss_pred chhhHHHHHhhhhhcc-cccc---CCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCE
Confidence 3455666764333221 1111 112345678999999999999999999999999999999999999999874 7889
Q ss_pred cccccEEEeCCCCChhhHHHHhhChhhhhh-cCCCcEEe-cC--CCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccc
Q psy6038 188 ADLGAMVVTGLGGNPINILARQINMELLKI-GHQCPLYQ-SS--AENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLD 263 (661)
Q Consensus 188 ~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~-~~~~~~~~-~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (661)
+|.|+|++.+...+ +..+++++|++.... .....++. .. +... .+.++... ...++.+...+...
T Consensus 143 ~D~G~h~~~g~~~~-~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~----P~~l~~~~~~l~~~----- 211 (567)
T PLN02612 143 YETGLHIFFGAYPN-VQNLFGELGINDRLQWKEHSMIFAMPNKPGEFS-RFDFPEVL----PAPLNGIWAILRNN----- 211 (567)
T ss_pred EcCCceEEeCCCch-HHHHHHHhCCcccceecccceEEEecCCCCcee-eCcCchhc----CChhhhhHHHHhcC-----
Confidence 99999999887654 668899999864321 11112221 11 1100 00111000 00011111111000
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHH
Q psy6038 264 FNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQ 343 (661)
Q Consensus 264 ~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (661)
..++. .+.+.. ...+............ ..++....+|+.+....+- ..++ -+.
T Consensus 212 ------~~ls~----~~kl~~----~~~~~~~~~~~~~~~~--~~d~~Sv~e~l~~~~~~~~--~~~~---------~~~ 264 (567)
T PLN02612 212 ------EMLTW----PEKIKF----AIGLLPAIVGGQAYVE--AQDGLSVKEWMRKQGVPDR--VNDE---------VFI 264 (567)
T ss_pred ------ccCCH----HHHHHH----HHhhhHHhcccchhhh--hcCcCcHHHHHHhcCCCHH--HHHH---------HHH
Confidence 00000 000000 0000000000000000 0111222445443211110 0000 011
Q ss_pred HHHhhhhcCCCCccccChhhHHHHHHHHhhhh-hhcCCCCccccccCCCCCCCccccCCce-eeccch-hHHHHHHhc--
Q psy6038 344 AKLHAMESNPPADVYLSVKDRQLLDWHFANLE-FANATPLASLSLKHWDQDDDFEFTGSHL-TVKKGY-ACVPTALAE-- 418 (661)
Q Consensus 344 ~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le-~~~~~~l~~lsl~~~~~~~~~~~~g~~~-~v~gG~-~~L~~aLa~-- 418 (661)
..+..+.. ..+.+..+ .+.+..+. +... ..+... .+.|+. +.|+++|++
T Consensus 265 ~l~~~~~~-------~~p~~~S~-~~~l~~l~~~l~~------------------~~gs~~~~~~G~~~~~l~~~l~~~l 318 (567)
T PLN02612 265 AMSKALNF-------INPDELSM-QCILIALNRFLQE------------------KHGSKMAFLDGNPPERLCMPIVDHF 318 (567)
T ss_pred HHHHHhcC-------CCHHHhhH-HHHHHHHHHHHhc------------------cCCceEeeecCCchHHHHHHHHHHH
Confidence 11111111 11111111 11111110 0000 011112 122332 456666654
Q ss_pred ---cCceeeCceEEEEEecCCceE--EEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHH
Q psy6038 419 ---GLDVHFNSSVTEIHYNSKGVT--VKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIR 493 (661)
Q Consensus 419 ---~L~I~lnt~V~~I~~~~~gv~--V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~ 493 (661)
+.+|++|++|++|..+++++. |.+.+ |+++.||+||+|+|+.+++.. .-....|....+.++
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~------G~~~~ad~VI~a~p~~~l~~L-------l~~~~~~~~~~~~l~ 385 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELNDDGTVKHFLLTN------GSVVEGDVYVSATPVDILKLL-------LPDQWKEIPYFKKLD 385 (567)
T ss_pred HhcCCEEEeCCeeeEEEECCCCcEEEEEECC------CcEEECCEEEECCCHHHHHHh-------CcchhcCcHHHHHHH
Confidence 447999999999998766632 44433 778999999999999999982 111111223445567
Q ss_pred HcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEec--------CCCcEEEEEeccchhhhhhccc-----
Q psy6038 494 RLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNL--------YQAPVLLALVAGEAASILEDVS----- 560 (661)
Q Consensus 494 ~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~--------~~~~vL~~~~~g~~a~~~~~~~----- 560 (661)
++.++++.+|++.|+++||...... +...... ...+.+. .....|+.++.+ .+..+..++
T Consensus 386 ~l~~~~v~~v~l~~dr~~~~~~~~~---~~~~~~~---~~~~~d~S~~~~~~~~~~~~ll~~~~~-~a~~~~~~sdeei~ 458 (567)
T PLN02612 386 KLVGVPVINVHIWFDRKLKNTYDHL---LFSRSPL---LSVYADMSTTCKEYYDPNKSMLELVFA-PAEEWISRSDEDII 458 (567)
T ss_pred hcCCCCeEEEEEEECcccCCCCCce---eecCCCC---ceeehhhhhcchhhcCCCCeEEEEEEE-cChhhhcCCHHHHH
Confidence 7889999999999999999643211 1111000 0111111 111234444433 233333332
Q ss_pred ---------CCCCCCCCCCceE--EEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCc
Q psy6038 561 ---------IFPTNTVPQPKET--VVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPA 629 (661)
Q Consensus 561 ---------~fg~~~~~~p~~~--~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~g 629 (661)
+||....+++... ....|...|+ ..|.+ .||.. ...+.+..| .++||||||+|+..|+|
T Consensus 459 e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~--a~~~~-~pg~~-~~rp~~~tP------i~~l~lAGd~t~~~~~~ 528 (567)
T PLN02612 459 DATMKELAKLFPDEISADQSKAKILKYHVVKTPR--SVYKT-VPNCE-PCRPLQRSP------IEGFYLAGDYTKQKYLA 528 (567)
T ss_pred HHHHHHHHHHCCcccccccCCceEEEEEEeccCC--ceEEe-CCCCc-ccCccccCc------cCCEEEeecceeCCchh
Confidence 7886433333333 3333444444 33543 24432 112333444 47899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q psy6038 630 TVHGAFLSGLKEGGHIVDQI 649 (661)
Q Consensus 630 tv~GA~~SG~raA~~i~~~~ 649 (661)
+||||+.||.+||++|++.+
T Consensus 529 smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 529 SMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 18
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=2e-28 Score=268.98 Aligned_cols=407 Identities=20% Similarity=0.274 Sum_probs=223.1
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhhh-cC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKI-GH 219 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~-~~ 219 (661)
+|+|||||+|||+||++|+++|++|+|||+++++||++.+++.+|+.+|.|++++.+. ...+..+++++|++.... ..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~-~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKS-DEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccc-cHHHHHHHHHcCCCCceeecc
Confidence 6999999999999999999999999999999999999999999999999999998765 356778899999854321 11
Q ss_pred CCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6038 220 QCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTL 299 (661)
Q Consensus 220 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (661)
....+..+|. ..+... .. .+ ..+ . .+++ .+.+......+ . ...
T Consensus 80 ~~~~~~~~~~-----~~~~~~--~~-----~~---~~~----------~--~~~~----~~~~~~~~~~~-~----~~~- 122 (434)
T PRK07233 80 TKTGYYVDGK-----LYPLGT--PL-----EL---LRF----------P--HLSL----IDKFRLGLLTL-L----ARR- 122 (434)
T ss_pred CceEEEECCe-----EecCCC--HH-----HH---HcC----------C--CCCH----HHHHHhHHHHH-h----hhh-
Confidence 1222222333 111100 00 00 000 0 0000 11111000000 0 000
Q ss_pred hhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhhhhcC
Q psy6038 300 DQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANA 379 (661)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~~ 379 (661)
.... ...+.....+|+.+....... ...++..+..+...++..+.. .+.+..+....
T Consensus 123 ~~~~--~~~~~~s~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~--------~~~~~~~~~~~- 179 (434)
T PRK07233 123 IKDW--RALDKVPAEEWLRRWSGEGVY------------EVFWEPLLESKFGDYADDVSA--------AWLWSRIKRRG- 179 (434)
T ss_pred cccc--cccccccHHHHHHHhcCHHHH------------HHHHHHHHhcccCCCccccCH--------HHHHHHHhhhh-
Confidence 0000 001111123444332211110 011222222222222222111 11111110000
Q ss_pred CCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccC-----ceeeCceEEEEEecCCceEEEEeCCCCCCCCeEE
Q psy6038 380 TPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL-----DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVY 454 (661)
Q Consensus 380 ~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L-----~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i 454 (661)
...+.. +.....+++||+++|+++|++.+ +|++|++|++|+.+++++.+...+ ++++
T Consensus 180 -------~~~~~~-----~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~------~~~~ 241 (434)
T PRK07233 180 -------NRRYSL-----FGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVD------GEEE 241 (434)
T ss_pred -------cccccc-----CCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeC------CceE
Confidence 000000 01124568999999999998754 699999999999888877655543 6789
Q ss_pred EeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEE
Q psy6038 455 TGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFL 534 (661)
Q Consensus 455 ~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~ 534 (661)
+||+||+|+|+..+.. +.|++|+...++++++.+....++++.|++++++. .+.....+.... ..+..
T Consensus 242 ~ad~vI~a~p~~~~~~---------ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~ 309 (434)
T PRK07233 242 DFDAVISTAPPPILAR---------LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDY--YWLNINDPGAPF-GGVIE 309 (434)
T ss_pred ECCEEEECCCHHHHHh---------hcCCCcHHHHhhhcccCccceEEEEEEecCCCCCC--ceeeecCCCCCc-ceEEE
Confidence 9999999999999887 33778888888999999999999999999985431 000000000000 00100
Q ss_pred E---Eec---CCCcEE--EEEeccchh-----------hhhhccc-CCCCCCCCCCceEEEecCCCCCCCCcccCccCCC
Q psy6038 535 F---WNL---YQAPVL--LALVAGEAA-----------SILEDVS-IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVG 594 (661)
Q Consensus 535 ~---~~~---~~~~vL--~~~~~g~~a-----------~~~~~~~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g 594 (661)
. +.. .+..++ ..++.++.. ..++.+. +|+......+... +|...+|+.+.| .+|
T Consensus 310 ~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~---~~~r~~~a~~~~---~~g 383 (434)
T PRK07233 310 HTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAV---RISRAPYAQPIY---EPG 383 (434)
T ss_pred ecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeE---EEEEeccccccc---cCc
Confidence 0 000 122232 334443321 0112222 5653211233344 444445665543 344
Q ss_pred CCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhc
Q psy6038 595 ASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILG 651 (661)
Q Consensus 595 ~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g 651 (661)
.. ...+.+..| .++|||||+++...+.++|+||+.||.+||++|++.+..
T Consensus 384 ~~-~~~~~~~~~------~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 384 YL-DKIPPYDTP------IEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred hh-hcCCCcccC------cCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 21 122233334 379999999555555679999999999999999988753
No 19
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.96 E-value=8.2e-27 Score=254.87 Aligned_cols=208 Identities=23% Similarity=0.305 Sum_probs=140.2
Q ss_pred ceeeccchhHHHHH-Hhc-----cCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCC
Q psy6038 402 HLTVKKGYACVPTA-LAE-----GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPP 475 (661)
Q Consensus 402 ~~~v~gG~~~L~~a-La~-----~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~ 475 (661)
..++++|+++++.. |++ +.+|++|++|++|+.+++++.++... +|+++.||+||+|+|+.++++
T Consensus 188 ~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~-----~g~~~~~d~vi~a~p~~~~~~----- 257 (419)
T TIGR03467 188 LLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLS-----GGETLPADAVVLAVPPRHAAS----- 257 (419)
T ss_pred eeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEec-----CCccccCCEEEEcCCHHHHHH-----
Confidence 45678898876544 654 45799999999999998887655432 167899999999999999988
Q ss_pred CccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEec--CCC-cEEEEEeccch
Q psy6038 476 KDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNL--YQA-PVLLALVAGEA 552 (661)
Q Consensus 476 ~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~--~~~-~vL~~~~~g~~ 552 (661)
+ .|. +.+.++++++.|+++.||++.|+++||.+. ..+|.... .. .+.+... ++. .++..++.+.
T Consensus 258 --l--l~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~- 324 (419)
T TIGR03467 258 --L--LPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVGG----LA-QWLFDRGQLAGEPGYLAVVISAA- 324 (419)
T ss_pred --h--CCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecCC----ce-eEEEECCcCCCCCCEEEEEEecc-
Confidence 3 232 256788999999999999999999998643 23443221 11 1111111 112 3444445432
Q ss_pred hhhhhccc--------------CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEE
Q psy6038 553 ASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFF 618 (661)
Q Consensus 553 a~~~~~~~--------------~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~F 618 (661)
..+..++ +||......|....+++|.. +.|++. +|.. ...+.+..| .++|||
T Consensus 325 -~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~g~~-~~~~~~~~~------~~~l~~ 390 (419)
T TIGR03467 325 -RDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKR-----ATFAAT-PGLN-RLRPGARTP------WPNLFL 390 (419)
T ss_pred -hhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccC-----CccccC-Cccc-ccCCCCCCC------cCCEEE
Confidence 2222222 77754334566777888864 334432 4432 222334444 478999
Q ss_pred ecccccCcCCcchhHHHHHHHHHHHHHH
Q psy6038 619 AGEHTIRNYPATVHGAFLSGLKEGGHIV 646 (661)
Q Consensus 619 AGe~t~~~~~gtv~GA~~SG~raA~~i~ 646 (661)
|||+|+..++++||||+.||.|||++|+
T Consensus 391 aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 391 AGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999899999999999999999986
No 20
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=7e-26 Score=251.84 Aligned_cols=419 Identities=19% Similarity=0.204 Sum_probs=225.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhh-h
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELL-K 216 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~-~ 216 (661)
+.++|+|||||+|||+||++|+++|++|+|+|+++++||++.|.+.+++.+|+|++++... ...+..++++++.... .
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~-~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSK-SPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccC-CHHHHHHHHHhcCCCccc
Confidence 4678999999999999999999999999999999999999999999999999999998754 3456788888875211 1
Q ss_pred hcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy6038 217 IGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQL 296 (661)
Q Consensus 217 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~~ 296 (661)
.......+..+|.. ..+|...... + ..+ ++ ... ...+......
T Consensus 82 ~~~~~~~~~~~g~~---~~~p~~~~~~--------l---~~~--------------~~----~~~----~~~~~~~~~~- 124 (479)
T PRK07208 82 LRPRLSRIYYRGKF---FDYPLKAFDA--------L---KNL--------------GL----WRT----AKCGASYLKA- 124 (479)
T ss_pred cccccceEEECCEE---ecCCcchhHH--------H---HhC--------------CH----hHH----HHHHHHHHHH-
Confidence 11222222234441 1222111000 0 000 00 000 0000000000
Q ss_pred hhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhhh
Q psy6038 297 DTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEF 376 (661)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le~ 376 (661)
.. ....++....+|+.+.....+.. ..+...+..++..++..+.+. |.+..+.
T Consensus 125 -----~~-~~~~~~~s~~e~l~~~~g~~~~~------------~~~~p~~~~~~~~~~~~~s~~--------~~~~~~~- 177 (479)
T PRK07208 125 -----RL-RPRKEEDSFEDWVINRFGRRLYS------------TFFKGYTEKVWGVPCDEISAD--------WAAQRIK- 177 (479)
T ss_pred -----hc-CCCCCCCCHHHHHHHhhCHHHHH------------HHHHHhhhhhhCCChHHCCCh--------HHhCccc-
Confidence 00 00011223356665443333211 112222333333333222211 1110000
Q ss_pred hcCCCCcc-c--cccCCC------CCCCccccCCceeeccchhHHHHHHhccC-----ceeeCceEEEEEecCCceE-EE
Q psy6038 377 ANATPLAS-L--SLKHWD------QDDDFEFTGSHLTVKKGYACVPTALAEGL-----DVHFNSSVTEIHYNSKGVT-VK 441 (661)
Q Consensus 377 ~~~~~l~~-l--sl~~~~------~~~~~~~~g~~~~v~gG~~~L~~aLa~~L-----~I~lnt~V~~I~~~~~gv~-V~ 441 (661)
+..+.. + .+.... ............++++|+++|+++|++.+ +|++|++|++|..+++++. +.
T Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~ 255 (479)
T PRK07208 178 --GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVV 255 (479)
T ss_pred --CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEE
Confidence 000000 0 000000 00000011234567899999999998744 6999999999999887643 32
Q ss_pred EeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceee
Q psy6038 442 TVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGH 521 (661)
Q Consensus 442 ~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~ 521 (661)
+.++.. +...++.||+||+|+|+..+.. + +.|++|+.+.++++++.+.++.+|++.|+++.+.+.. +.+
T Consensus 256 ~~~~~~-g~~~~~~ad~VI~a~p~~~l~~-------~-l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~--~~~ 324 (479)
T PRK07208 256 VVNDTD-GTEETVTADQVISSMPLRELVA-------A-LDPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDN--WIY 324 (479)
T ss_pred EEEcCC-CCEEEEEcCEEEECCCHHHHHH-------h-cCCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCc--eEE
Confidence 222100 1124699999999999998887 2 3477888999999999999999999999998654321 111
Q ss_pred eccCCCCCCceE--EEEec----CCCcEEE--EEeccchhh------------hhhccc-CCCCCCCCCCceEEEecCCC
Q psy6038 522 VGSTTASRGELF--LFWNL----YQAPVLL--ALVAGEAAS------------ILEDVS-IFPTNTVPQPKETVVTRWKA 580 (661)
Q Consensus 522 ~~~~~~~~g~~~--~~~~~----~~~~vL~--~~~~g~~a~------------~~~~~~-~fg~~~~~~p~~~~~~~W~~ 580 (661)
+.......+.+. ..|+. .+..+.+ .+....... .++++. + +......|..+.+++|.
T Consensus 325 ~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l-~~~~~~~~~~~~v~r~~- 402 (479)
T PRK07208 325 IHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL-GLIRPADVEDGFVVRVP- 402 (479)
T ss_pred ecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc-CCCChhheeEEEEEEec-
Confidence 211000001111 11111 1121222 232211111 111121 3 21113456777788874
Q ss_pred CCCCCcccCccCCCCCCcchhh---hcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHh
Q psy6038 581 DPFAKGSYSFVAVGASGSDYDT---LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649 (661)
Q Consensus 581 dp~~~Gsys~~~~g~~~~~~~~---la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~ 649 (661)
.+|..+.+|... ..+. +.++ .++|+|||++....| .+||+|+.||+++|++|++..
T Consensus 403 -----~a~P~y~~~~~~-~~~~~~~~~~~------~~~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 403 -----KAYPVYDGTYER-NVEIIRDLLDH------FPNLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred -----CcccCCCchHHH-HHHHHHHHHHh------cCCceeecccccccc-CChhHHHHHHHHHHHHHhcCC
Confidence 445444444321 1222 2222 379999999876544 699999999999999988763
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.93 E-value=2.4e-23 Score=231.10 Aligned_cols=456 Identities=16% Similarity=0.196 Sum_probs=233.6
Q ss_pred HHHHHHHHHhhHHhc-CCccccCCCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccC-CCcccc
Q psy6038 111 SRLHCYLERHGYINF-GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK-KSNYVA 188 (661)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~-~~~~~~ 188 (661)
.++++|+.++...+- ++..+.+.....+.++|+|||||++||+||+.|.+.|++|+|+|+++++||++.+++ ..|..+
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~ 125 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI 125 (569)
T ss_pred HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEE
Confidence 389999998876541 122211111112346999999999999999999999999999999999999999986 468889
Q ss_pred ccccEEEeCCCCChhhHHHHhhChhhhhhcC-CCcEEe-cCCCCCC-CCcCCCchhhHHHHHHHHHHHHhhhhhcccccc
Q psy6038 189 DLGAMVVTGLGGNPINILARQINMELLKIGH-QCPLYQ-SSAENSD-NLQVPKDKDDLVEREFNRLLECTSYLSHTLDFN 265 (661)
Q Consensus 189 d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~-~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (661)
|+|.|++.+... .+..+++++|+....... ....+. .+|.... .+.++... +-..+.. ++.
T Consensus 126 e~G~h~~~~~~~-~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~---pl~~~~~------~l~------ 189 (569)
T PLN02487 126 EMGLHVFFGCYN-NLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGA---PLHGIKA------FLT------ 189 (569)
T ss_pred ecceeEecCCcH-HHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCc---hhhhHHH------HHc------
Confidence 999999988754 567889999986542211 222222 2222100 00111000 0000001 100
Q ss_pred cccCCCchhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhccCC-CCCchhHHHhhhhhhhh-HHHHHHHhHHhhHHHHHH
Q psy6038 266 YLEGKPLSLVIELQEELKPVLS-RMNEILVQLDTLDQTLQNVP-IDNTTAVEFQKRSTRRD-MNHLCTEYDQLNEKKTQL 342 (661)
Q Consensus 266 ~~~~~p~s~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 342 (661)
...++. .+.+..... .+..+...+........... .++....+|+.+....+ +. ...+
T Consensus 190 ---~~~Ls~----~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~------------~~l~ 250 (569)
T PLN02487 190 ---TNQLEP----YDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSI------------KRMW 250 (569)
T ss_pred ---CCCCCH----HHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHH------------HHHH
Confidence 000000 000000000 00000000000000000001 11122345554433222 10 0112
Q ss_pred HHHHhhhhcCCCCccccChhhHHHHHHHHhhhhhhcCCCCccccccCCCCCCCccccCCceeeccchhH-HHHHHhccC-
Q psy6038 343 QAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYAC-VPTALAEGL- 420 (661)
Q Consensus 343 ~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~-L~~aLa~~L- 420 (661)
+..+......++ +.-...+....+.+. + .. .-.+...+++||++. |++.+++.|
T Consensus 251 dPll~~~~~~~~--------d~~SA~~~~~vl~~~-~-----------~~----~~~~~l~~~~Gg~~~~l~~pl~~~L~ 306 (569)
T PLN02487 251 DPIAYALGFIDC--------DNISARCMLTIFSLF-A-----------TK----TEASLLRMLKGSPDVRLSGPIAKYIT 306 (569)
T ss_pred HHHHHHhhCCCH--------HHHHHHHHHHHHHHH-h-----------hc----CCcceeeecCCCchHHHHHHHHHHHH
Confidence 222222211111 111111211111100 0 00 001223567899984 888887644
Q ss_pred ----ceeeCceEEEEEecC--Cc---eE-EEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCH--HH
Q psy6038 421 ----DVHFNSSVTEIHYNS--KG---VT-VKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPD--WK 488 (661)
Q Consensus 421 ----~I~lnt~V~~I~~~~--~g---v~-V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~--~k 488 (661)
+|+++++|++|..++ ++ +. |.+.+ .++++++.||+||+|+|+..+++ +.|..+. ..
T Consensus 307 ~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~---~~~~~~~~aD~VV~A~p~~~~~~---------Llp~~~~~~~~ 374 (569)
T PLN02487 307 DRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK---ATEKEIVKADAYVAACDVPGIKR---------LLPEQWREYEF 374 (569)
T ss_pred HcCCEEEeCCceEEEEEecCCCCceeEEEEEEec---CCCceEEECCEEEECCCHHHHHH---------hCCchhhccHH
Confidence 799999999999873 33 22 34421 12366799999999999999988 3354422 23
Q ss_pred HHHHHHcCCccccEEEEEccccccccCC--------CceeeeccCCCCCCceEEEEe-----------cCCCcEEEEEec
Q psy6038 489 VKSIRRLGYGLLNKVVLCFDKIFWDPAE--------NLFGHVGSTTASRGELFLFWN-----------LYQAPVLLALVA 549 (661)
Q Consensus 489 ~~ai~~l~~g~~~Kv~l~f~~~fW~~~~--------~~~g~~~~~~~~~g~~~~~~~-----------~~~~~vL~~~~~ 549 (661)
...+.++...++..|+|+||++.=.... ...|....-.........+.+ ......|-.++.
T Consensus 375 ~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis 454 (569)
T PLN02487 375 FDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLT 454 (569)
T ss_pred HhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEc
Confidence 6678888889999999999975432210 111111000000011111111 011234444454
Q ss_pred cchhh-----------hhhccc-CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEE
Q psy6038 550 GEAAS-----------ILEDVS-IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLF 617 (661)
Q Consensus 550 g~~a~-----------~~~~~~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~ 617 (661)
+.... .+..+. +|+......+....+.+..+--|.. .||+.. .++....| .+++|
T Consensus 455 ~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~------~pg~~~-~RP~~~T~------~~nl~ 521 (569)
T PLN02487 455 PGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYRE------APGMDP-FRPDQKTP------ISNFF 521 (569)
T ss_pred CCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceecc------CCCccc-cCCCCCCC------CCCEE
Confidence 33210 011111 6764222234455555544333332 244321 11222333 47999
Q ss_pred EecccccCcCCcchhHHHHHHHHHHHHHHHHhh
Q psy6038 618 FAGEHTIRNYPATVHGAFLSGLKEGGHIVDQIL 650 (661)
Q Consensus 618 FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~ 650 (661)
+||++|...||.|||||+.||.+||+.|++...
T Consensus 522 LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 522 LAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred EeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998763
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.93 E-value=1.8e-23 Score=233.06 Aligned_cols=313 Identities=20% Similarity=0.218 Sum_probs=177.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCC-CChhhHHHHhhChhhhh--
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG-GNPINILARQINMELLK-- 216 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~-~~~~~~l~~~lgl~~~~-- 216 (661)
+||+|||||++||+||..|+++|++|+|||+++++||++.+++.+|+.+|.|++++.+.. ...+..+.+++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999998753 45677888999987432
Q ss_pred -hcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6038 217 -IGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQ 295 (661)
Q Consensus 217 -~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~ 295 (661)
......++..+|.. .+.++.+.+.+.+. +.... .. + .+.+..+.+..+.
T Consensus 82 ~~d~~~~~~~~dg~~--~~~~~~d~~~~~~~-l~~~~------p~------------~---------~~~~~~~~~~~~~ 131 (492)
T TIGR02733 82 ILDPACAVDLPDGSE--PIPLWHDPDRWQKE-RERQF------PG------------S---------ERFWQLCSQLHQS 131 (492)
T ss_pred cCCCCcEEEECCCce--EeeeecCHHHHHHH-HHHHC------CC------------h---------HHHHHHHHHHHHH
Confidence 22234455666621 22344554333221 11100 00 0 0001111111111
Q ss_pred hhhhhhhhccCC--CCCchhHHHhhhh--hhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHH
Q psy6038 296 LDTLDQTLQNVP--IDNTTAVEFQKRS--TRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHF 371 (661)
Q Consensus 296 ~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~ 371 (661)
.... +...+ ..... .++.... ...... ....+ ...++.+.+... ..+-++..+.++++..
T Consensus 132 ~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-----~~~s~~~~l~~~------~~~~~~~lr~~l~~~~ 195 (492)
T TIGR02733 132 NWRF---AGRDPVLPPRNY-WDLLQLVSALRPDTL-LTGPL-----SLLTVADLLRLC------GLGDDRRLRRFLDLQL 195 (492)
T ss_pred HHHH---hhcCCCCCCCCH-HHHHHHHHhcChhhh-hhhhh-----hhhhHHHHHHHh------CCCccHHHHHHHHHHH
Confidence 0000 00000 00000 1110000 000000 00000 112223332211 0122444555565443
Q ss_pred hhhhhhcCCCCccccccCCC-CCCCccccCCceeeccchhHHHHHHhccC-----ceeeCceEEEEEecCCceE-EEEeC
Q psy6038 372 ANLEFANATPLASLSLKHWD-QDDDFEFTGSHLTVKKGYACVPTALAEGL-----DVHFNSSVTEIHYNSKGVT-VKTVD 444 (661)
Q Consensus 372 ~~le~~~~~~l~~lsl~~~~-~~~~~~~~g~~~~v~gG~~~L~~aLa~~L-----~I~lnt~V~~I~~~~~gv~-V~~~~ 444 (661)
.. + .+.+....+..... .........+.++++||+++|+++|++.+ +|++|++|++|..+++++. |.+.+
T Consensus 196 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~ 272 (492)
T TIGR02733 196 KL--Y-SQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVD 272 (492)
T ss_pred hh--h-ccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEec
Confidence 21 1 12222222211100 00001112345679999999999998755 6999999999998876532 43333
Q ss_pred CCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCcccc-EEEEEccc
Q psy6038 445 PKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLN-KVVLCFDK 509 (661)
Q Consensus 445 ~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~-Kv~l~f~~ 509 (661)
+.. ++++++.||+||+|+|+..+.+ +...|.+|++..+.++++.+.... ++++.+++
T Consensus 273 ~~~-~~~~~~~ad~VI~~~~~~~~~~-------ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~ 330 (492)
T TIGR02733 273 SRK-QEDLNVKADDVVANLPPQSLLE-------LLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKR 330 (492)
T ss_pred CCC-CceEEEECCEEEECCCHHHHHH-------hcCcccCCHHHHHHHhcCCCCCceEEEEEeecc
Confidence 111 1136899999999999999887 444568888888888899887744 88899987
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=2.1e-23 Score=222.27 Aligned_cols=415 Identities=20% Similarity=0.229 Sum_probs=240.1
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhhh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKI 217 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~ 217 (661)
++|+|||||+|||+||++|++.| .+|+|||+.+++||.+.|++.+|+.+|.|++.+... ...+..+.+++|++...+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999999 999999999999999999999999999999987655 366778999999987665
Q ss_pred c--CCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6038 218 G--HQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQ 295 (661)
Q Consensus 218 ~--~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~~~ 295 (661)
. .....++.+|+. .++|... + -+.|... ..... .....
T Consensus 80 ~~~~~~~~i~~~gkl---~p~P~~~--i------------------------~~ip~~~----~~~~~-------~~~~~ 119 (444)
T COG1232 80 WNSTARKYIYYDGKL---HPIPTPT--I------------------------LGIPLLL----LSSEA-------GLARA 119 (444)
T ss_pred cCCcccceEeeCCcE---EECCccc--e------------------------eecCCcc----ccchh-------HHHHH
Confidence 2 234456677762 1333221 0 0001000 00000 00000
Q ss_pred hhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhhhh
Q psy6038 296 LDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLE 375 (661)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~le 375 (661)
+.+..........++....+|+.+...+++.+. -+...+...+..+...+.+....... ...+
T Consensus 120 ~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~~------------~~~pll~giy~~~~~~LS~~~~~p~~-----~~~e 182 (444)
T COG1232 120 LQEFIRPKSWEPKQDISVGEFIRRRFGEEVVER------------FIEPLLEGIYAGDADKLSAAAAFPIL-----ARAE 182 (444)
T ss_pred HHhhhcccCCCCCCCcCHHHHHHHHHhHHHHHH------------HHHHHhhchhcCCHHHhhHHHhcchh-----hhhh
Confidence 111111100111222334677766655554321 12233333333322222211000000 0001
Q ss_pred hhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccC--ceeeCceEEEEEecCCceEEEEeCCCCCCCCeE
Q psy6038 376 FANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453 (661)
Q Consensus 376 ~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L--~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~ 453 (661)
-..+..+..+......+. ..-.+....+++|+++|+++|++.+ +|++|++|++|..+.++..+++.+ |..
T Consensus 183 ~~~~s~~~g~~~~~~~~~--~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~------g~~ 254 (444)
T COG1232 183 RKYGSLLRGAKKEGLPKQ--SLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVG------GEK 254 (444)
T ss_pred hhhcchhhhhhhccCccc--ccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcC------Cce
Confidence 111111111100000000 0012345678999999999999977 689999999999997777777765 788
Q ss_pred EEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceE
Q psy6038 454 YTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELF 533 (661)
Q Consensus 454 i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~ 533 (661)
++||.||+|+|+..|.. +.++ ....+++.++.+-++..|++.|+++-=....+.+|.+..+.... ...
T Consensus 255 ~~~D~VI~t~p~~~l~~---------ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~-~~a 322 (444)
T COG1232 255 ITADGVISTAPLPELAR---------LLGD--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY-ILA 322 (444)
T ss_pred EEcceEEEcCCHHHHHH---------HcCC--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCc-cee
Confidence 99999999999999988 4444 23357788999989999999988751111224456655444332 222
Q ss_pred EEEec-------C-CCcEEEEEeccchhh-------------hhhccc-CCCCCCCCCCceEEEecCCCCCCCCcccCcc
Q psy6038 534 LFWNL-------Y-QAPVLLALVAGEAAS-------------ILEDVS-IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591 (661)
Q Consensus 534 ~~~~~-------~-~~~vL~~~~~g~~a~-------------~~~~~~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~ 591 (661)
..|+. + +..+|.+++.+..-. .++++. +++.. .+|..+.++||. .++.-+
T Consensus 323 ~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~--~~~~~~~v~r~~------~~~PqY 394 (444)
T COG1232 323 ITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN--GDPVFVEVTRWK------YAMPQY 394 (444)
T ss_pred EEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC--cchhheeeeecc------ccCCcc
Confidence 23322 1 223455544332211 112222 55543 345688899995 455555
Q ss_pred CCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHHHHHHHHHH
Q psy6038 592 AVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIV 646 (661)
Q Consensus 592 ~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~ 646 (661)
.+|... ....+...+. +..++|+.+|-+... + .+.+.+.+|..||++++
T Consensus 395 ~vG~~~-~~~~ir~~l~--~~y~gi~~~G~~~~g--~-g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 395 EVGHLD-RLEPIRAALK--GAYPGIKSVGRYGEG--V-GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred chhHHH-HHHHHHHhhc--cccCCeEEeccCCCC--C-CchHHHHHHHHHHHHhh
Confidence 555431 1222222221 112789999988753 2 58888999999999875
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.92 E-value=1.1e-22 Score=224.44 Aligned_cols=74 Identities=27% Similarity=0.432 Sum_probs=66.0
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccC-CCccccccccEEEeCCCCChhhHHHHhhChhhh
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK-KSNYVADLGAMVVTGLGGNPINILARQINMELL 215 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~-~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~ 215 (661)
+|+|||||++||+||+.|++.|++|+|+|+++++||++.++. ..|+.+|.|.|++.+... .+..+++++|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~-~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYA-NLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchH-HHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999974 568899999999987654 46788899998643
No 25
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=2.3e-23 Score=200.10 Aligned_cols=211 Identities=18% Similarity=0.274 Sum_probs=137.8
Q ss_pred eeeccchhHHHHHHhccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCC
Q psy6038 403 LTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNP 482 (661)
Q Consensus 403 ~~v~gG~~~L~~aLa~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P 482 (661)
+.-.-||++|++.|+..|+|+++++|++|.+.++.+++++.++ +....+|.||+|+|.+....++ -.-.-
T Consensus 101 yvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g-----~~~~~~d~vvla~PAPQ~~~LL-----t~~~~ 170 (331)
T COG3380 101 YVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDG-----TRHTQFDDVVLAIPAPQTATLL-----TTDAD 170 (331)
T ss_pred cccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCC-----CcccccceEEEecCCCcchhhc-----Ccccc
Confidence 3345799999999999999999999999999999999998653 6789999999999988776621 00123
Q ss_pred CCCHHHHHHHHHcCCccccEEEEEccccccccC------CCceeeeccCCCCCCceEEEEecCCCcEEEEEeccchhh--
Q psy6038 483 PLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPA------ENLFGHVGSTTASRGELFLFWNLYQAPVLLALVAGEAAS-- 554 (661)
Q Consensus 483 ~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~------~~~~g~~~~~~~~~g~~~~~~~~~~~~vL~~~~~g~~a~-- 554 (661)
.+|...+.++..+.|.+...+.|.|..+-=.+- .+.++.+..+.+..|.. +..++++-...-+-++
T Consensus 171 ~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK~g~~------p~~~~~vvqasp~wSr~h 244 (331)
T COG3380 171 DLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASKKGHV------PDGEIWVVQASPDWSREH 244 (331)
T ss_pred cchHHHHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccCCCCC------CcCceEEEEeCchHHHHh
Confidence 689999999999999999999999986532221 11222222111111110 0011222222211111
Q ss_pred -------hhhccc-----CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEeccc
Q psy6038 555 -------ILEDVS-----IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEH 622 (661)
Q Consensus 555 -------~~~~~~-----~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~ 622 (661)
.+..+. +++. ..++|.-...++|. |+.+ .....- . ++. .....+|+++|++
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~Wr--------YA~P--~~~~~~-~----~L~-ad~~~~l~~cGDw 307 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWR--------YAIP--NDAVAG-P----PLD-ADRELPLYACGDW 307 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccc--------cccc--cccccC-C----ccc-cCCCCceeeeccc
Confidence 111111 4443 46788888889995 4332 221110 1 111 1224789999999
Q ss_pred ccCcCCcchhHHHHHHHHHHHHHHHHh
Q psy6038 623 TIRNYPATVHGAFLSGLKEGGHIVDQI 649 (661)
Q Consensus 623 t~~~~~gtv~GA~~SG~raA~~i~~~~ 649 (661)
++. |-||||++||+.+|.+|++.|
T Consensus 308 c~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 308 CAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred ccC---cchhHHHhccHHHHHHHHhcC
Confidence 975 899999999999999998754
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.90 E-value=5.9e-22 Score=221.55 Aligned_cols=70 Identities=33% Similarity=0.501 Sum_probs=64.2
Q ss_pred EEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChh
Q psy6038 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
|||||||++||+||.+|+++|++|+|||+++++||+++|++.+|+.+|.|++++.+. +++..+.+++|++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~--~~~~~l~~~lg~~ 70 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMP--EALEELFALAGRD 70 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccc--cHHHHHHHHcCCC
Confidence 699999999999999999999999999999999999999999999999999999743 5677888888854
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.87 E-value=1e-19 Score=202.69 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=159.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCC----CChhhHHHHhhChhhh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG----GNPINILARQINMELL 215 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~----~~~~~~l~~~lgl~~~ 215 (661)
.||||||||++||+||..|+++|++|+||||++.+||++.+++.+|+.+|.|++++.+.. .+.+..+...++..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 479999999999999999999999999999999999999999999999999999987653 2344445555554333
Q ss_pred hhcCC--CcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHH
Q psy6038 216 KIGHQ--CPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEIL 293 (661)
Q Consensus 216 ~~~~~--~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~~ 293 (661)
..... ..+...+|. .+.++.+.+.+... +.... |. ..+.+.+.+..+....
T Consensus 81 ~~~~~~~~~~~~~~g~---~~~~~~d~~~~~~~-l~~~~------------------P~-----~~~~~~~~~~~~~~~~ 133 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGL---NVKVHREYDDFIQE-LVAKF------------------PH-----EKEGIRRFYDECWQVF 133 (493)
T ss_pred ccCCCccEEEECCCCe---eEeeecCHHHHHHH-HHHHC------------------ch-----hHHHHHHHHHHHHHHH
Confidence 22222 223334453 23444444322211 11100 00 0011111111111111
Q ss_pred HHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHhh
Q psy6038 294 VQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFAN 373 (661)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~ 373 (661)
+.+... . ......+..+...+... .. ....+.. ....++.+.+... +.++..+.+|+.....
T Consensus 134 ~~~~~~-~-~~~~~~~~~~~~~~~~~----~~--~~~~~~~--~~~~s~~~~~~~~--------~~~~~l~~~l~~~~~~ 195 (493)
T TIGR02730 134 NCLNSM-E-LLSLEEPRYLFRVFFKH----PL--ACLGLAK--YLPQNAGDIARRY--------IRDPGLLKFIDIECFC 195 (493)
T ss_pred HHHHhh-h-hccccChHHHHHHHhhc----hh--hhhHHHH--HhhccHHHHHHHh--------cCCHHHHHHHHHHHHh
Confidence 111000 0 00000000000001000 00 0000000 0011122222221 2344445555433221
Q ss_pred hhhhcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhcc-----CceeeCceEEEEEecCCceE-EEEeCCCC
Q psy6038 374 LEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEG-----LDVHFNSSVTEIHYNSKGVT-VKTVDPKT 447 (661)
Q Consensus 374 le~~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~-----L~I~lnt~V~~I~~~~~gv~-V~~~~~~~ 447 (661)
.. ..+....+.............++.+.+.||++.|+++|.+. .+|+++++|++|..+++++. |.+.+
T Consensus 196 ~~---~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~--- 269 (493)
T TIGR02730 196 WS---VVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLAD--- 269 (493)
T ss_pred cc---CCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCC---
Confidence 11 11111111100000000012345567999999999999864 47999999999998766544 55543
Q ss_pred CCCCeEEEeCEEEEccChh-hhhhcCCCCCccccCCCCCHHHHHHHHHcCCc-cccEEEEEcccc
Q psy6038 448 GQNETVYTGDRVLCTLPLG-ILKACIQPPKDVLFNPPLPDWKVKSIRRLGYG-LLNKVVLCFDKI 510 (661)
Q Consensus 448 ~~~g~~i~AD~VV~TvP~~-vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g-~~~Kv~l~f~~~ 510 (661)
|++++||+||+++.+. .+.. +.-...+|......++++..+ ...++++..+..
T Consensus 270 ---g~~~~ad~vV~a~~~~~~~~~-------Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~ 324 (493)
T TIGR02730 270 ---GEKIYAKRIVSNATRWDTFGK-------LLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKAD 324 (493)
T ss_pred ---CCEEEcCEEEECCChHHHHHH-------hCCccccchhhHHHHhhccCCCceEEEEEEecCc
Confidence 7789999999988654 4444 111123444434445566654 467888888773
No 28
>KOG1276|consensus
Probab=99.79 E-value=9.6e-18 Score=171.33 Aligned_cols=424 Identities=19% Similarity=0.239 Sum_probs=241.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcE--EEEcCCCCCCCceeccC-CCccccccccEEEeCCC--CChhhHHHHhhC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEV--VVLEARERVGGRIVTFK-KSNYVADLGAMVVTGLG--GNPINILARQIN 211 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v--~v~e~~~~~GG~i~t~~-~~~~~~d~G~~~i~~~~--~~~~~~l~~~lg 211 (661)
..+++|+|+|||++||+|||+|++++.+| +++|+.+|+||.++|.+ ..+.++|.|+..+.+.+ +-.+..+..++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 45789999999999999999999999866 55999999999999954 46889999999987654 223557889999
Q ss_pred hh--hhhhcCCCc----E-EecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHH
Q psy6038 212 ME--LLKIGHQCP----L-YQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKP 284 (661)
Q Consensus 212 l~--~~~~~~~~~----~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~ 284 (661)
++ +..++..++ . ....|+.. .+|...... .-+ ..+...+.
T Consensus 89 l~~e~~~i~~~~paaknr~l~~~~~L~---~vP~sl~~s-----------~~~-------------------~l~p~~k~ 135 (491)
T KOG1276|consen 89 LEDELQPIDISHPAAKNRFLYVPGKLP---TVPSSLVGS-----------LKF-------------------SLQPFGKP 135 (491)
T ss_pred ccceeeecCCCChhhhheeeccCcccc---cCCcccccc-----------ccc-------------------ccCcccch
Confidence 95 333433333 2 22233311 222221100 000 00000111
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhH
Q psy6038 285 VLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDR 364 (661)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 364 (661)
.+..+ .. +....-...+..++...+|.+|....++.+ ..+..++.+.++.+++.+.+.....
T Consensus 136 L~~a~---l~---e~fr~~~~~~~~dESV~sF~~RrfG~eV~d------------~~isp~i~GiyAgD~~~LSmk~~F~ 197 (491)
T KOG1276|consen 136 LLEAF---LR---ELFRKKVSDPSADESVESFARRRFGKEVAD------------RLISPFIRGIYAGDPSELSMKSSFG 197 (491)
T ss_pred hHHHH---Hh---hhccccCCCCCccccHHHHHHHhhhHHHHH------------HHHHHHhCccccCChHHhhHHHHHH
Confidence 11111 00 011111111233445567777766655433 2355566666666665555433222
Q ss_pred HHHHHHHhhhhhhcCCC----------------CccccccCCCCCCCccccCCceeeccchhHHHHHHhccC-----cee
Q psy6038 365 QLLDWHFANLEFANATP----------------LASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL-----DVH 423 (661)
Q Consensus 365 ~ll~~~~~~le~~~~~~----------------l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L-----~I~ 423 (661)
.++. .|...|.. -+..... +. ..-.-..+..+||++.++++|.+.| .|.
T Consensus 198 ~l~~-----~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~---~~--~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~ 267 (491)
T KOG1276|consen 198 KLWK-----VEQKHGSIILGTIRAKFARKRTKKAETALSA---QA--KKEKWTMFSLKGGLETLPKALRKSLGEREVSIS 267 (491)
T ss_pred HHHH-----HHHhccchhHHHHHHHHHhhcCCCccchhhh---hh--cccccchhhhhhhHhHhHHHHHHHhcccchhhh
Confidence 2211 12111111 1110000 00 0001123568899999999999877 477
Q ss_pred eCceEEEEEecC-CceEEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccE
Q psy6038 424 FNSSVTEIHYNS-KGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNK 502 (661)
Q Consensus 424 lnt~V~~I~~~~-~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~K 502 (661)
+..++..|.... +++.+++.+.. .......++++.|+|..++.. ..|++.+....++..+.|.++.-
T Consensus 268 ~~~~~~~~sk~~~~~~~~tl~~~~---~~~~~~~~~~~~t~~~~k~a~---------ll~~~~~sls~~L~ei~y~~V~v 335 (491)
T KOG1276|consen 268 LGLKLSGNSKSRSGNWSLTLVDHS---GTQRVVVSYDAATLPAVKLAK---------LLRGLQNSLSNALSEIPYVPVAV 335 (491)
T ss_pred cccccccccccccCCceeEeEcCC---CceeeeccccccccchHHhhh---------hccccchhhhhhhhcCCCCceEE
Confidence 888888887654 44777766431 145566777778999999988 56777788889999999999999
Q ss_pred EEEEccccccccCCCceeeeccCCCCC--CceEEEEe------cCCCcEEEEEeccchhhhhhc---------------c
Q psy6038 503 VVLCFDKIFWDPAENLFGHVGSTTASR--GELFLFWN------LYQAPVLLALVAGEAASILED---------------V 559 (661)
Q Consensus 503 v~l~f~~~fW~~~~~~~g~~~~~~~~~--g~~~~~~~------~~~~~vL~~~~~g~~a~~~~~---------------~ 559 (661)
|++.|+++==+-.-..||++.+..... ..+-..++ .++.|.++..+.|.......- +
T Consensus 336 Vn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~al 415 (491)
T KOG1276|consen 336 VNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSAL 415 (491)
T ss_pred EEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHH
Confidence 999998853222345789887632222 22223333 234556666555543321111 1
Q ss_pred c-CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCCcEEEecccccCcCCcchhHHHHHH
Q psy6038 560 S-IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSG 638 (661)
Q Consensus 560 ~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~rl~FAGe~t~~~~~gtv~GA~~SG 638 (661)
. +++-.+ .|...-++-|.+ |..-+.+|.... .+...+-+. ..+-.+|+.+|.|...- .|---++||
T Consensus 416 q~~Lgi~~--~P~~~~v~l~~~------ciPqy~vGh~~~-le~a~~~l~-~~~g~~l~l~G~~y~Gv---~vgdcI~sg 482 (491)
T KOG1276|consen 416 QKMLGISN--KPVSVNVHLWKN------CIPQYTVGHDDV-LEAAKSMLT-DSPGLGLFLGGNHYGGV---SVGDCIESG 482 (491)
T ss_pred HHHhCCCC--Ccccccceehhh------cccceecchHHH-HHHHHHHHH-hCCCCceEeeccccCCC---ChhHHHHhh
Confidence 1 455333 366666666643 444444553311 111111111 12225899999998752 366678888
Q ss_pred HHHHHHHH
Q psy6038 639 LKEGGHIV 646 (661)
Q Consensus 639 ~raA~~i~ 646 (661)
.++|.+++
T Consensus 483 ~~~A~~v~ 490 (491)
T KOG1276|consen 483 RKTAVEVI 490 (491)
T ss_pred HHHHHhhc
Confidence 88888764
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.79 E-value=3.4e-18 Score=169.80 Aligned_cols=292 Identities=19% Similarity=0.178 Sum_probs=166.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccC----CCccccccccEEEeCCCCChhhHHHHhhCh
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK----KSNYVADLGAMVVTGLGGNPINILARQINM 212 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~----~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl 212 (661)
..+.+|+|||+|+|||+||+.|.+. ++|++||+.+++||+.+|.. -+|.-+|.|..++.+.....+..|.+.+|+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv 84 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGV 84 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCC
Confidence 3568999999999999999999875 89999999999999999985 235679999999988555667799999998
Q ss_pred hhhhhcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhhcccccccccCCCchhHHHHHHHHHHHHHHHHHH
Q psy6038 213 ELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEI 292 (661)
Q Consensus 213 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~s~~i~~~~~~~~~~~~~~~~ 292 (661)
+...-.-..++....|. +.+.... .....+....+. + ......++..+...
T Consensus 85 ~t~as~Msf~v~~d~gg----lEy~g~t------------gl~~L~aqk~n~-------l------~pRf~~mlaeiLrf 135 (447)
T COG2907 85 DTKASFMSFSVSLDMGG----LEYSGLT------------GLAGLLAQKRNL-------L------RPRFPCMLAEILRF 135 (447)
T ss_pred CCcccceeEEEEecCCc----eeeccCC------------Cccchhhccccc-------c------chhHHHHHHHHHHH
Confidence 76543333333333232 0111000 000000000000 0 00000111111111
Q ss_pred HHHhhhhhhhhccCCCCCchhHHHhhhhhhhhHHHHHHHhHHhhHHHHHHHHHHhhhhcCCCCccccChhhHHHHHHHHh
Q psy6038 293 LVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFA 372 (661)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~ 372 (661)
.+. ..........++...++|+.+...... ++..| +......+.+.+. .....+..+
T Consensus 136 ~r~---~~~~~d~~~~~~~tl~~~L~~~~f~~a--f~e~~---------l~P~~aaiwstp~---------~d~~~~pa~ 192 (447)
T COG2907 136 YRS---DLAPSDNAGQGDTTLAQYLKQRNFGRA--FVEDF---------LQPLVAAIWSTPL---------ADASRYPAC 192 (447)
T ss_pred hhh---hccchhhhcCCCccHHHHHHhcCccHH--HHHHh---------HHHHHHHHhcCcH---------hhhhhhhHH
Confidence 110 000000011122223556544322211 11111 1112222222221 111222222
Q ss_pred hhh-h-hcCCCCccccccCCCCCCCccccCCceeeccchhHHHHHHhccCc--eeeCceEEEEEecCCceEEEEeCCCCC
Q psy6038 373 NLE-F-ANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVTEIHYNSKGVTVKTVDPKTG 448 (661)
Q Consensus 373 ~le-~-~~~~~l~~lsl~~~~~~~~~~~~g~~~~v~gG~~~L~~aLa~~L~--I~lnt~V~~I~~~~~gv~V~~~~~~~~ 448 (661)
++- | .+...+. + .-...+.+|.||...-++.|+.++. |+++++|++|..-.+||.|+..+
T Consensus 193 ~~~~f~~nhGll~-l-----------~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~---- 256 (447)
T COG2907 193 NFLVFTDNHGLLY-L-----------PKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNAD---- 256 (447)
T ss_pred HHHHHHhccCcee-c-----------CCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCC----
Confidence 210 0 1111000 1 1122356799999999999999995 99999999999999999887754
Q ss_pred CCCeEEEeCEEEEccChhhhhhcCCCCCccccCCCCCHHHHHHHHHcCCccccEEEEEcc
Q psy6038 449 QNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFD 508 (661)
Q Consensus 449 ~~g~~i~AD~VV~TvP~~vL~~~~~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~ 508 (661)
|++-++|+||+++-+...-. ..+.-.++.++++..++|.....|...+.
T Consensus 257 --G~s~rFD~vViAth~dqAl~---------mL~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 257 --GESRRFDAVVIATHPDQALA---------LLDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred --CCccccceeeeecChHHHHH---------hcCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 88899999999998886555 34433455566999999998888877655
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=4.4e-18 Score=188.30 Aligned_cols=71 Identities=38% Similarity=0.526 Sum_probs=62.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQIN 211 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lg 211 (661)
+.+||||||||++||+||.+|+++|++|+||||++++|||++|++..|+.+|+|++++...... .+.++++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~---~~~~~l~ 72 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG---PLFRELG 72 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH---HHHHHhc
Confidence 3589999999999999999999999999999999999999999999999999999998876433 4445555
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=7.2e-17 Score=171.39 Aligned_cols=75 Identities=31% Similarity=0.517 Sum_probs=67.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCC-CccccccccEEEeCCCCChhhHHHHhhChhhh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKK-SNYVADLGAMVVTGLGGNPINILARQINMELL 215 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~-~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~ 215 (661)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.+++. +|...|+|.|++++++.|.+ .++++++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~-~ll~~~~~~~~ 76 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLL-TLLKELPIEDR 76 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHH-HHhhhCCchhe
Confidence 58999999999999999999999999999999999999999996 57899999999999987754 77778887643
No 32
>KOG0399|consensus
Probab=99.52 E-value=1.7e-14 Score=160.22 Aligned_cols=172 Identities=20% Similarity=0.337 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhccccCCC----CcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQKIESPF----NSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAG 148 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G 148 (661)
..|.++-++...|.+++.|.+.|..-|...+ ...|+.|..+++-+.++++.. ||+++.+| .....++|+|||+|
T Consensus 1717 ~wk~al~~ll~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~e-gwm~p~pp-~~rtg~~vaiigsg 1794 (2142)
T KOG0399|consen 1717 QWKEALEQLLETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEE-GWMKPCPP-AFRTGKRVAIIGSG 1794 (2142)
T ss_pred HHHHHHHHHHhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHh-cCCccCCc-ccccCcEEEEEccC
Confidence 5777888899999999999998876665443 367999999999999999999 99887655 56788999999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEcCCCCCCCc----eeccCCCcccc--------ccccEEEeCCCCChhhHHHHhhChhhhh
Q psy6038 149 ISGLAAARHMEQFGIEVVVLEARERVGGR----IVTFKKSNYVA--------DLGAMVVTGLGGNPINILARQINMELLK 216 (661)
Q Consensus 149 ~aGl~aa~~l~~~g~~v~v~e~~~~~GG~----i~t~~~~~~~~--------d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 216 (661)
||||+||-+|.+.||.|+||||.+|+||. |++.++++.++ +-|..++++. .+.+.+.++..
T Consensus 1795 paglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~------eigk~vs~d~l- 1867 (2142)
T KOG0399|consen 1795 PAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNT------EIGKHVSLDEL- 1867 (2142)
T ss_pred chhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeec------cccccccHHHH-
Confidence 99999999999999999999999999998 56677776554 3677777655 23333333322
Q ss_pred hcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhhh
Q psy6038 217 IGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLS 259 (661)
Q Consensus 217 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (661)
....++++.+.|. ..|+++ .+.++++.++..+++||.
T Consensus 1868 ~~~~daiv~a~gs-----t~prdl-pv~grd~kgv~fame~l~ 1904 (2142)
T KOG0399|consen 1868 KKENDAIVLATGS-----TTPRDL-PVPGRDLKGVHFAMEFLE 1904 (2142)
T ss_pred hhccCeEEEEeCC-----CCCcCC-CCCCccccccHHHHHHHH
Confidence 1345778888887 555554 344566677777777663
No 33
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.47 E-value=5.3e-14 Score=111.37 Aligned_cols=67 Identities=40% Similarity=0.567 Sum_probs=57.6
Q ss_pred EEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCC-CCChhhHHHHhh
Q psy6038 144 VIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL-GGNPINILARQI 210 (661)
Q Consensus 144 iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~-~~~~~~~l~~~l 210 (661)
|||||++||+||+.|++.|++|+|+|+++++||++.+.+.++..+|.|++++... ....+..+.++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999998999999999999875 344566666653
No 34
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.46 E-value=3.6e-14 Score=166.94 Aligned_cols=158 Identities=24% Similarity=0.323 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc--cccCCC--CcchhhHHHHHHHHHHhhHHhcCC-----cc-ccCCCCCCCCCcE
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ--KIESPF--NSEVQLVSRLHCYLERHGYINFGI-----FQ-RITPIPVKKSGKV 142 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~v 142 (661)
+++.++..+...||++.+|.+.|.. .|...| .++||.|+.+++|+.++.... +. +. ...+....++++|
T Consensus 231 ~~~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~-~~~~~~~~~~~~~~~~~~~gkkV 309 (944)
T PRK12779 231 KHREALELIESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLV-NPNANERFAGRISPWAAAVKPPI 309 (944)
T ss_pred CHHHHHHHHHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhh-chhhhhcccccccccccCCCCeE
Confidence 5677788899999999999999876 233221 267999999999999986543 21 11 1111123468999
Q ss_pred EEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc----eeccCCCcc--------ccccccEEEeCCCCChhhHHHHhh
Q psy6038 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR----IVTFKKSNY--------VADLGAMVVTGLGGNPINILARQI 210 (661)
Q Consensus 143 ~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~----i~t~~~~~~--------~~d~G~~~i~~~~~~~~~~l~~~l 210 (661)
+|||||||||+||++|+++||+|+|||+.+++||. |+.++++.. +.++|..+..+.. +.+++
T Consensus 310 aVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~------vG~di 383 (944)
T PRK12779 310 AVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFV------VGKTA 383 (944)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEE------eccEE
Confidence 99999999999999999999999999999999998 445665543 3346777665542 11222
Q ss_pred ChhhhhhcCCCcEEecCCCC-CCCCcCC
Q psy6038 211 NMELLKIGHQCPLYQSSAEN-SDNLQVP 237 (661)
Q Consensus 211 gl~~~~~~~~~~~~~~~G~~-~~~~~~~ 237 (661)
.++.......+.++.+.|.. +..+.+|
T Consensus 384 t~~~l~~~~yDAV~LAtGA~~pr~l~Ip 411 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGAGLPTFMNVP 411 (944)
T ss_pred eHHHhccccCCEEEEeCCCCCCCcCCCC
Confidence 22211112468899999982 3333444
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.40 E-value=1e-11 Score=134.84 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=43.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKK 183 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~ 183 (661)
..+||||||+|++|+.+|..|++.|++|+++|+++..||+.+|+++
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l 48 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNL 48 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccH
Confidence 3589999999999999999999999999999999999999998743
No 36
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.37 E-value=6.9e-13 Score=143.51 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhcc--ccCC----CCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQK--IESP----FNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
.+...+-.++..|+++.+|.+.|..- |... .++.++.|..+++|+.+.++.. |+.+.. ++.....++|+|||
T Consensus 53 ~~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~-g~i~~~-~~~~~tg~~VaviG 130 (457)
T COG0493 53 VDHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADRE-GWIPGE-LPGSRTGKKVAVIG 130 (457)
T ss_pred CcHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHh-CCCCCC-CCCCCCCCEEEEEC
Confidence 46777789999999999999988633 4332 2468999999999999999988 776665 43455669999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCce----eccCCCcccc--------ccccEEEeCCCCChhhHHHHhhChhh
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRI----VTFKKSNYVA--------DLGAMVVTGLGGNPINILARQINMEL 214 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i----~t~~~~~~~~--------d~G~~~i~~~~~~~~~~l~~~lgl~~ 214 (661)
||||||+||..|++.|++|+|+|+.+.+||++ +.++++..++ ..|..+..+..-. +.+.++.
T Consensus 131 aGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG------~~it~~~ 204 (457)
T COG0493 131 AGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG------RDITLEE 204 (457)
T ss_pred CCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC------CcCCHHH
Confidence 99999999999999999999999999999995 4566654333 3666665544211 1111111
Q ss_pred hhhcCCCcEEecCCCCCCCCcCCCchhhHHHHHHHHHHHHhhhh
Q psy6038 215 LKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYL 258 (661)
Q Consensus 215 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (661)
. ....+.+++..|. ..++.. .+.+.+.+.+..++.||
T Consensus 205 L-~~e~Dav~l~~G~-----~~~~~l-~i~g~d~~gv~~A~dfL 241 (457)
T COG0493 205 L-LKEYDAVFLATGA-----GKPRPL-DIPGEDAKGVAFALDFL 241 (457)
T ss_pred H-HHhhCEEEEeccc-----cCCCCC-CCCCcCCCcchHHHHHH
Confidence 1 1223577888887 444433 12223344455555554
No 37
>KOG4254|consensus
Probab=99.34 E-value=7.1e-11 Score=121.95 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=66.0
Q ss_pred ccCCceeeccchhHHHHHHhccC-----ceeeCceEEEEEecCCceE-EEEeCCCCCCCCeEEEeCEEEEccChh-hhhh
Q psy6038 398 FTGSHLTVKKGYACVPTALAEGL-----DVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETVYTGDRVLCTLPLG-ILKA 470 (661)
Q Consensus 398 ~~g~~~~v~gG~~~L~~aLa~~L-----~I~lnt~V~~I~~~~~gv~-V~~~~~~~~~~g~~i~AD~VV~TvP~~-vL~~ 470 (661)
..|...++.||++.+..++++.+ .|.+++.|.+|..+++.+. |...+ |++++++.||+...+. .+.+
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~d------G~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLAD------GTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecC------CcEEEeeeeecCCchHHHHHH
Confidence 45677889999999999999866 7999999999998885543 77766 8999999999986654 3323
Q ss_pred cCCCCCccccCC--CCCHHHHHHHHHcCC-ccccE
Q psy6038 471 CIQPPKDVLFNP--PLPDWKVKSIRRLGY-GLLNK 502 (661)
Q Consensus 471 ~~~~~~~i~f~P--~Lp~~k~~ai~~l~~-g~~~K 502 (661)
..| .||+.. .|+.+.+ .++.|
T Consensus 326 ---------Llp~e~LPeef--~i~q~d~~spv~k 349 (561)
T KOG4254|consen 326 ---------LLPGEALPEEF--VIQQLDTVSPVTK 349 (561)
T ss_pred ---------hCCCccCCchh--hhhhccccccccc
Confidence 233 577765 7777764 34444
No 38
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.34 E-value=8.6e-13 Score=153.92 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHhcccc----CCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccCh
Q psy6038 74 IRNRILQMWLENPKVQLTLEFVMQKIE----SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGI 149 (661)
Q Consensus 74 irn~~~~~~~~np~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~ 149 (661)
...++..+...||++.+|.+.|.+.|. ....++||.|+.+++|+.++++.++. .....+.+...+++|+||||||
T Consensus 469 ~~~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~-~~~~~~~~~~~~kkVaIIGGGP 547 (1012)
T TIGR03315 469 YLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYK-TRWHKPQGKSSAHKVAVIGAGP 547 (1012)
T ss_pred HHHHHHHHHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcC-ccCCCCCCCCCCCcEEEECCCH
Confidence 445666788899999999988865443 32337899999999999999877632 1111122234678999999999
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCCCCcee----ccCCCc--------cccccccEEEeCCCCChhhHHHHhhChhhhhh
Q psy6038 150 SGLAAARHMEQFGIEVVVLEARERVGGRIV----TFKKSN--------YVADLGAMVVTGLGGNPINILARQINMELLKI 217 (661)
Q Consensus 150 aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~----t~~~~~--------~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~ 217 (661)
|||+||++|+++|++|+|+|+++.+||.+. .++.+. ....+|..+..+.... ..++....
T Consensus 548 AGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d--------~~ve~l~~ 619 (1012)
T TIGR03315 548 AGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD--------LTVAELKN 619 (1012)
T ss_pred HHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc--------eEhhhhhc
Confidence 999999999999999999999999999974 333332 2234677766653211 01111111
Q ss_pred cCCCcEEecCCCC
Q psy6038 218 GHQCPLYQSSAEN 230 (661)
Q Consensus 218 ~~~~~~~~~~G~~ 230 (661)
.....++.+.|..
T Consensus 620 ~gYDaVIIATGA~ 632 (1012)
T TIGR03315 620 QGYKYVILAIGAW 632 (1012)
T ss_pred ccccEEEECCCCC
Confidence 2346788888873
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.33 E-value=5.2e-12 Score=133.91 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=53.2
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccc-cccccEEEeCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYV-ADLGAMVVTGLG 199 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~-~d~G~~~i~~~~ 199 (661)
.||+|||||+|||++|++|++.|.+|+|+|+++.+||++.+...++.. .+.|+++++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~ 62 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNN 62 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCc
Confidence 589999999999999999999999999999999999999887666644 489999987654
No 40
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.32 E-value=1.2e-12 Score=155.72 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc--c----ccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ--K----IESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
+++.++..++..||++.+|.+.|.. . |.....++||.|+.+++|+.+++..+ ++.. +....+.++|+|||
T Consensus 362 ~~~~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~-~~~~---~~~~~~~~kVaIIG 437 (1006)
T PRK12775 362 DFDGALEVIYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAK-PVKP---PRFSKKLGKVAICG 437 (1006)
T ss_pred CHHHHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHc-CCCC---CCCCCCCCEEEEEC
Confidence 4666777799999999999998875 2 33333478999999999999998766 4421 22234578999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCce----eccCCCc--------cccccccEEEeCCCCChhhHHHHhhChhh
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRI----VTFKKSN--------YVADLGAMVVTGLGGNPINILARQINMEL 214 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i----~t~~~~~--------~~~d~G~~~i~~~~~~~~~~l~~~lgl~~ 214 (661)
||||||+||.+|+++|++|+|||+.+.+||.+ +.++.+. ....+|..+..+.. +.+++.++.
T Consensus 438 ~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~------vg~~~~~~~ 511 (1006)
T PRK12775 438 SGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKV------IGKTFTVPQ 511 (1006)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCc------cCCccCHHH
Confidence 99999999999999999999999999999985 3344442 23457888776542 111222221
Q ss_pred hh-hcCCCcEEecCCCC-CCCCcCC
Q psy6038 215 LK-IGHQCPLYQSSAEN-SDNLQVP 237 (661)
Q Consensus 215 ~~-~~~~~~~~~~~G~~-~~~~~~~ 237 (661)
.. -...+.++++.|.. +..+.+|
T Consensus 512 l~~~~~yDaViIATGa~~pr~l~Ip 536 (1006)
T PRK12775 512 LMNDKGFDAVFLGVGAGAPTFLGIP 536 (1006)
T ss_pred HhhccCCCEEEEecCCCCCCCCCCC
Confidence 11 12357889999983 3334444
No 41
>PRK12831 putative oxidoreductase; Provisional
Probab=99.28 E-value=6.3e-12 Score=138.52 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc--ccc----CCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ--KIE----SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
++..++..++..||++.+|.+.|.. .|. ....++||.|+.+++|+.+++..+ ++. . ..+...+.++|+|||
T Consensus 71 ~~~~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~-~~~-~-~~~~~~~~~~V~IIG 147 (464)
T PRK12831 71 DFEEAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWAREN-GID-L-SETEEKKGKKVAVIG 147 (464)
T ss_pred CHHHHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHc-CCC-C-CCCcCCCCCEEEEEC
Confidence 3677788899999999999988864 333 223378999999999999998876 552 2 233446789999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||+|||+||++|+++|++|+|+|+.+.+||.+.
T Consensus 148 ~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 148 SGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 999999999999999999999999999999864
No 42
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.28 E-value=9.3e-12 Score=142.69 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCCCH-HHHhcc---ccCCCCcchhhHHHHHHHHHHhh------HHhcCCccc------c-CCCCCC
Q psy6038 75 RNRILQMWLENPKVQLTL-EFVMQK---IESPFNSEVQLVSRLHCYLERHG------YINFGIFQR------I-TPIPVK 137 (661)
Q Consensus 75 rn~~~~~~~~np~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------~-~~~~~~ 137 (661)
+.++..++..||++.+|. +.|..| |... .++||.|+.+++|+.+.. +..|..... . ..+...
T Consensus 303 ~~Al~ii~~~NP~p~~~G~RVCp~CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~ 381 (1028)
T PRK06567 303 LSALAIIVIDNPMVAATGHRICNDCSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEP 381 (1028)
T ss_pred HHHHHHHHHhCCChHhhCCccCcchHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCC
Confidence 446667889999999998 877543 3333 478999999999998853 322221111 1 112345
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
++++|+|||||||||+||++|++.||+|+|+|+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 789999999999999999999999999999999765444
No 43
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.23 E-value=1.1e-11 Score=144.04 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHhcccc----CCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccCh
Q psy6038 74 IRNRILQMWLENPKVQLTLEFVMQKIE----SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGI 149 (661)
Q Consensus 74 irn~~~~~~~~np~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~ 149 (661)
...++..+...||++.+|.+.|.+.|. ....++||.|+.+++|+.++++.++ ......+....++++|+|||||+
T Consensus 471 ~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~-~~~~~~~~~~~tgKkVaIIGgGP 549 (1019)
T PRK09853 471 YAEALELIYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEY-KQRWHKPAGIGSRKKVAVIGAGP 549 (1019)
T ss_pred HHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhc-ccccCCCCccCCCCcEEEECCCH
Confidence 445666688899999999988764443 3334789999999999999887652 21111222235688999999999
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 150 SGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 150 aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
|||+||++|+++|++|+|+|+.+.+||.+.
T Consensus 550 AGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 550 AGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred HHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 999999999999999999999999999964
No 44
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.22 E-value=3.5e-10 Score=124.14 Aligned_cols=73 Identities=27% Similarity=0.308 Sum_probs=56.7
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCCCCCCCceeccC--CCccccccccEEEeCCCCChhhHHHHh
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARERVGGRIVTFK--KSNYVADLGAMVVTGLGGNPINILARQ 209 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~~~~GG~i~t~~--~~~~~~d~G~~~i~~~~~~~~~~l~~~ 209 (661)
...+++|+|||||+|||+||++|++. |++|+|||+++.+||++.++. ..|++++.|.+. .. ....+..+++.
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~-~y~~l~~ll~~ 96 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-EN-HFECLWDLFRS 96 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cc-hHHHHHHHHHh
Confidence 34468999999999999999999995 689999999999999998754 568888877664 22 22344455555
Q ss_pred h
Q psy6038 210 I 210 (661)
Q Consensus 210 l 210 (661)
+
T Consensus 97 i 97 (576)
T PRK13977 97 I 97 (576)
T ss_pred c
Confidence 4
No 45
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.17 E-value=1.2e-10 Score=136.33 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc-------cccCCCCc-chhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEE
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ-------KIESPFNS-EVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIV 144 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 144 (661)
+++.++..++..||++.++.+.|.. |.+.. .+ .+|.|+.+++|+.++...+ +..... .+.....++|+|
T Consensus 360 ~~~~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~-~~~~~v~i~~l~r~~~d~~~~~-~~~~~~-~~~~~~~~~V~I 436 (752)
T PRK12778 360 NFLEAAKILKETSALPAVCGRVCPQEKQCESKCIHGK-MGEEAVAIGYLERFVADYERES-GNISVP-EVAEKNGKKVAV 436 (752)
T ss_pred CHHHHHHHHHhhCCchhHhcCcCCCcCchHHhcccCC-CCCCCcCHHHHHHHHHHHHHHh-CCCCCC-CCCCCCCCEEEE
Confidence 4566777789999999999998863 22333 24 7999999999999987655 322211 122356789999
Q ss_pred EccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee----ccCCCcc--------ccccccEEEeCCCCChhhHHHHhhCh
Q psy6038 145 IGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV----TFKKSNY--------VADLGAMVVTGLGGNPINILARQINM 212 (661)
Q Consensus 145 iG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~----t~~~~~~--------~~d~G~~~i~~~~~~~~~~l~~~lgl 212 (661)
||||+|||+||++|+++|++|+|+|+.+.+||.+. .++++.. ..++|..+..+.. +.+.+.+
T Consensus 437 IGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~------v~~~v~~ 510 (752)
T PRK12778 437 IGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVI------VGKTITI 510 (752)
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCE------ECCcCCH
Confidence 99999999999999999999999999999999864 3444432 2345666665431 1111111
Q ss_pred hhhhhcCCCcEEecCCC
Q psy6038 213 ELLKIGHQCPLYQSSAE 229 (661)
Q Consensus 213 ~~~~~~~~~~~~~~~G~ 229 (661)
+.......+.++.+.|.
T Consensus 511 ~~l~~~~ydavvlAtGa 527 (752)
T PRK12778 511 EELEEEGFKGIFIASGA 527 (752)
T ss_pred HHHhhcCCCEEEEeCCC
Confidence 11111235788888887
No 46
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.16 E-value=5.5e-11 Score=136.86 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc------cccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ------KIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
++..++..+...||++.+|.+.|.. .|.....++||.|+.+++|+.++++.+ ++.... +....+.++|+|||
T Consensus 257 ~~~~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~-~~~~~~-~~~~~~~~~VaIIG 334 (654)
T PRK12769 257 NIDAAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAK-GWRPDL-SQVTKSDKRVAIIG 334 (654)
T ss_pred CHHHHHHHHHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHh-CCCCCC-cccccCCCEEEEEC
Confidence 4566777788999999999999852 133333478999999999999998876 553222 11224678999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 335 aGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 335 AGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 999999999999999999999999999999864
No 47
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.16 E-value=5.6e-11 Score=131.61 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhcc----ccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQK----IESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAG 148 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G 148 (661)
+++.++..++..||++.++.+.|.+- |.....+++|.|+.+++|+.+++... ++..+. .+.....++|+|||||
T Consensus 75 ~~~~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~-~~~~~~-~~~~~~~~~VvIIGaG 152 (471)
T PRK12810 75 RWEEAAERLHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEE-GWVKPD-PPVKRTGKKVAVVGSG 152 (471)
T ss_pred CHHHHHHHHHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHc-CCCCCC-CCcCCCCCEEEEECcC
Confidence 36677777899999999998877543 33323478999999999999988765 432222 2234567899999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 149 ~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+|||+||..|+++|++|+|+|+.+.+||.+.
T Consensus 153 pAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 153 PAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 9999999999999999999999999999754
No 48
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.14 E-value=8.4e-11 Score=134.77 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc--c----ccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ--K----IESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
+++.++..+...||++.++.+.|.. . |.....+++|.|+.+++|+.++++.+ |+..... +...+.++|+|||
T Consensus 240 ~~~~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~-~~~~~~~-~~~~~~kkVaIIG 317 (639)
T PRK12809 240 KIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAM-GWRPDVS-KVVPRSEKVAVIG 317 (639)
T ss_pred CHHHHHHHHHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHh-CCCCCCC-cccCCCCEEEEEC
Confidence 4667777789999999999999852 2 22223468999999999999999877 6633222 2234689999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||++||+||+.|+++|++|+|||+.+.+||.++
T Consensus 318 ~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 318 AGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred cCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 999999999999999999999999999999864
No 49
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.14 E-value=9.4e-11 Score=129.44 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHh--cccc----CCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEc
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVM--QKIE----SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIG 146 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG 146 (661)
++..++..++..||++.++.+.|. +.|. ....++||.|+.+++|+.++...+ ++.+... +...+.++|+|||
T Consensus 71 ~~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~-~~~~~~~-~~~~~~~~V~IIG 148 (467)
T TIGR01318 71 RIDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAM-GWRPDLS-HVVPTGKRVAVIG 148 (467)
T ss_pred CHHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHh-CCCCCCC-CcCCCCCeEEEEC
Confidence 366677778999999999999885 2332 222368999999999999998765 4433221 1234678999999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 147 AGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 147 ~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus 149 ~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 149 AGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 999999999999999999999999999999864
No 50
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=99.12 E-value=5.9e-11 Score=98.79 Aligned_cols=83 Identities=34% Similarity=0.490 Sum_probs=70.9
Q ss_pred HHHHcCCCCCCCChhHhhhccccccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHHHH
Q psy6038 38 AAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYL 117 (661)
Q Consensus 38 ~a~~~~l~~~~~~~~e~~~~p~~~~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (661)
.|+++.++++.+++.|.+++|+...+ ...+.|+.|||.|+..|..||...+|..+|.+.+.. .+...+.+++.||
T Consensus 4 ~~~~~~~~~~~l~~~E~~~~~e~~~~--~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~~---~d~~~~~ri~~FL 78 (86)
T PF04433_consen 4 PAHSSWFDPDKLSEIEKQLCPEFFIG--KTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIKG---IDVNKIRRIYDFL 78 (86)
T ss_dssp HCCHTTTTTTSS-HHHHHHCHHCTTS--CHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTTS---SSHHHHHHHHHHH
T ss_pred ccccCCCCcccCCHHHHHHhHHHhcc--CChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHccc---cCHHHHHHHHHHH
Confidence 46789999999999999999999874 345689999999999999999999999999999882 4788999999999
Q ss_pred HHhhHHhc
Q psy6038 118 ERHGYINF 125 (661)
Q Consensus 118 ~~~~~~~~ 125 (661)
.++|+|||
T Consensus 79 ~~~G~INf 86 (86)
T PF04433_consen 79 ERWGLINF 86 (86)
T ss_dssp HHTTSSSS
T ss_pred HHcCccCC
Confidence 99999996
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.09 E-value=1.9e-10 Score=126.54 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc--cccCCC--------CcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcE
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ--KIESPF--------NSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKV 142 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (661)
+...++..+...||++.++.+.|.. .|...+ .++++.|+.+++|+.++...+ +...... +.....++|
T Consensus 59 ~~~~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~V 136 (449)
T TIGR01316 59 DFKGAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQH-GIETEPE-KAPSTHKKV 136 (449)
T ss_pred CHHHHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhc-CCCcCCC-CCCCCCCEE
Confidence 3455667788999999999998865 333222 368999999999999987765 5432221 223567899
Q ss_pred EEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 143 ~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 137 AVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred EEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 9999999999999999999999999999999999764
No 52
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.08 E-value=7.7e-10 Score=114.20 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=45.6
Q ss_pred eeeccchhHHHHHHhcc-----CceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccC
Q psy6038 403 LTVKKGYACVPTALAEG-----LDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP 464 (661)
Q Consensus 403 ~~v~gG~~~L~~aLa~~-----L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP 464 (661)
+......+.|+++|... ++|+++++|.+|++++.+..|.+.+ |++++||.+|+|+-
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~------g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS------GETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC------CCEEEccEEEEecC
Confidence 33346778888888764 4799999999999999888888765 67999999999864
No 53
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.01 E-value=4.9e-10 Score=128.58 Aligned_cols=105 Identities=23% Similarity=0.201 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhccc----cCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQKI----ESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAG 148 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G 148 (661)
+++.++.-++..||++.++.+.|.+.| .....++++.|+.+++|+.++...+ +.. ....++....++|+|||||
T Consensus 125 ~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~-~~~-~~~~~~~~~~k~VaIIGaG 202 (652)
T PRK12814 125 DDREAIRIIKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMES-AER-YIPERAPKSGKKVAIIGAG 202 (652)
T ss_pred CHHHHHHHHHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhc-Ccc-cCCCCCCCCCCEEEEECCC
Confidence 466677779999999999988875433 2233468999999999999877654 111 1112233567899999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 149 ~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 203 pAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 203 PAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 9999999999999999999999999999865
No 54
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.00 E-value=1.1e-09 Score=121.40 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHh----ccccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVM----QKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAG 148 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G 148 (661)
+++.++..++..||++.++.+.|. ..|.....++++.|+.+++|+.++.+.. ++..... +.....++|+|||||
T Consensus 75 ~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~-~~~~~~~-~~~~~~~~V~IIGaG 152 (485)
T TIGR01317 75 RWKEALDRLHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQE-GWVQPRP-PSKRTGKKVAVVGSG 152 (485)
T ss_pred CHHHHHHHHHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHc-CCCCCCC-CcCCCCCEEEEECCc
Confidence 356677778999999999998654 4444444468999999999999987765 4322221 223456899999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 149 ~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
++||+||..|++.|++|+|+|+.+++||.+.
T Consensus 153 ~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 153 PAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 9999999999999999999999999999864
No 55
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.98 E-value=5.1e-10 Score=105.64 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=58.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCC-CCChhhHHHHhhChhhhh
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL-GGNPINILARQINMELLK 216 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~-~~~~~~~l~~~lgl~~~~ 216 (661)
...||+|||||||||+||++|+++|++|+|+|++-.+||-++ .|++.++.. -..+...+++++|+++..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEE 98 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCccee
Confidence 356899999999999999999999999999999999999766 455555432 256778899999998765
Q ss_pred h
Q psy6038 217 I 217 (661)
Q Consensus 217 ~ 217 (661)
.
T Consensus 99 ~ 99 (262)
T COG1635 99 E 99 (262)
T ss_pred c
Confidence 3
No 56
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.93 E-value=2.3e-09 Score=121.49 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhcccc----CCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQKIE----SPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAG 148 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G 148 (661)
+.+.++..++..||++.++.+.|.+.|. ....+.++.|+.+++|+.++...+ ++... .+....+++|+|||||
T Consensus 70 ~~~~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~-~~~~~--~~~~~~g~~V~VIGaG 146 (564)
T PRK12771 70 DYEYAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIAN-GWKFP--APAPDTGKRVAVIGGG 146 (564)
T ss_pred CHHHHHHHHHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHc-CCCCC--CCCCCCCCEEEEECCC
Confidence 4566777788999999999988754443 223368999999999999988765 44221 2234568899999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 149 ~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
++||+||+.|+++|++|+|+|+.+.+||.++
T Consensus 147 paGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 147 PAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 9999999999999999999999999999754
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.91 E-value=1.1e-08 Score=109.99 Aligned_cols=40 Identities=45% Similarity=0.668 Sum_probs=30.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+||+|||||+|||.||..|++.|++|+|+|+++++|=++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil 40 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL 40 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee
Confidence 5899999999999999999999999999999999986543
No 58
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.90 E-value=3.8e-09 Score=116.75 Aligned_cols=103 Identities=26% Similarity=0.371 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhc-------cccCCCCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEE
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQ-------KIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVI 145 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ii 145 (661)
++..+...++..||++.++.+.|.+ |++.. .+.++.|+.+++|+.++.... +...+ .++....++|+||
T Consensus 71 ~~~~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~-~~~~v~i~~l~~~~~~~~~~~-~~~~~--~~~~~~~~~VvII 146 (457)
T PRK11749 71 NLKGAAETILETNPLPAVCGRVCPQERLCEGACVRGK-KGEPVAIGRLERYITDWAMET-GWVLF--KRAPKTGKKVAVI 146 (457)
T ss_pred CHHHHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCC-CCCCcchHHHHHHHHHHHHhc-CCCCC--CCCccCCCcEEEE
Confidence 3566777789999999999888753 22232 267899999999999887665 43211 1223567899999
Q ss_pred ccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 146 GAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 146 G~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
|||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus 147 GgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 147 GAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 9999999999999999999999999999999753
No 59
>PRK10015 oxidoreductase; Provisional
Probab=98.86 E-value=4.2e-07 Score=99.48 Aligned_cols=39 Identities=36% Similarity=0.579 Sum_probs=35.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..+||+||||||||++||+.|++.|++|+|+|+.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 358999999999999999999999999999999988764
No 60
>PRK13984 putative oxidoreductase; Provisional
Probab=98.85 E-value=4.4e-09 Score=120.40 Aligned_cols=104 Identities=24% Similarity=0.339 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHhccccCC----CCcchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccChH
Q psy6038 75 RNRILQMWLENPKVQLTLEFVMQKIESP----FNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGIS 150 (661)
Q Consensus 75 rn~~~~~~~~np~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~a 150 (661)
..++..++..||++.+|.+.|...|... ..++++.|+.+++|+.+....+ +......++...+.++|+|||+|++
T Consensus 216 ~~a~~~~~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~IIGaG~a 294 (604)
T PRK13984 216 EEGLRWLYKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVE-KYSEILDDEPEKKNKKVAIVGSGPA 294 (604)
T ss_pred HHHHHHHHhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHc-CcccccCCCcccCCCeEEEECCCHH
Confidence 3455667889999999988875444332 2368999999999999886543 2221112223456789999999999
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 151 GLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 151 Gl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||+||..|+++|++|+|+|+.+.+||...
T Consensus 295 Gl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 295 GLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 99999999999999999999999999754
No 61
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.79 E-value=6.8e-08 Score=102.80 Aligned_cols=52 Identities=29% Similarity=0.306 Sum_probs=39.2
Q ss_pred hhHHHHHHhc-----cCceeeCceEEEEEecCCceE-EEEeCCCCCCCCeEEEeCEEEEccChhh
Q psy6038 409 YACVPTALAE-----GLDVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETVYTGDRVLCTLPLGI 467 (661)
Q Consensus 409 ~~~L~~aLa~-----~L~I~lnt~V~~I~~~~~gv~-V~~~~~~~~~~g~~i~AD~VV~TvP~~v 467 (661)
...++++|.+ +.+|+.+++|++|..++++++ |.+.+ |+ ++||+||+|.-...
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~------g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSD------GE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETT------EE-EEECEEEE--GGGH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccc------cc-cccceeEecccccc
Confidence 4566666654 468999999999999999988 88865 55 99999999986543
No 62
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.79 E-value=3e-09 Score=101.36 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=46.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhh
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLK 216 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 216 (661)
...||+|||||||||+||++|+++|++|+|+|++..+||.++. ++..+. .++ -..+...+++++|+.+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~---Gg~lf~---~iV---Vq~~a~~iL~elgi~y~~ 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG---GGMLFN---KIV---VQEEADEILDELGIPYEE 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS----CTT------EE---EETTTHHHHHHHT---EE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc---cccccc---hhh---hhhhHHHHHHhCCceeEE
Confidence 3579999999999999999999999999999999999997663 222221 111 124556788999998754
No 63
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=9.1e-08 Score=102.18 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=38.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~GG~i~t 180 (661)
...||+|||||+.|+++|++|.+.+ ++|+|+|+.+.+|--...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 4579999999999999999999998 999999999999975544
No 64
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.73 E-value=1.1e-06 Score=90.95 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=34.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+||+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 4899999999999999999999999999999987754
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.61 E-value=3.5e-07 Score=100.19 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=36.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
..+||+||||||||++||+.|+++|++|+|+|+.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 3589999999999999999999999999999999888753
No 66
>PRK07588 hypothetical protein; Provisional
Probab=98.58 E-value=4.5e-07 Score=98.29 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHHhccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccCh
Q psy6038 412 VPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPL 465 (661)
Q Consensus 412 L~~aLa~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~ 465 (661)
|.+++..+++|++++.|++|+.+++++.|++.+ |++++||.||.|--.
T Consensus 109 L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~~d~vIgADG~ 156 (391)
T PRK07588 109 IYTAIDGQVETIFDDSIATIDEHRDGVRVTFER------GTPRDFDLVIGADGL 156 (391)
T ss_pred HHHhhhcCeEEEeCCEEeEEEECCCeEEEEECC------CCEEEeCEEEECCCC
Confidence 334444457899999999999988888887765 778999999998664
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.55 E-value=1.7e-06 Score=93.30 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=33.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.||+|||||++|+++|++|++.|++|+|+|+.+..++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~ 37 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence 4899999999999999999999999999999876643
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.54 E-value=4.9e-06 Score=90.82 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=34.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+||+|||||++|+++|++|++.|++|+|+||++.+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~ 38 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAM 38 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 5899999999999999999999999999999987663
No 69
>PRK07236 hypothetical protein; Provisional
Probab=98.53 E-value=1e-06 Score=95.29 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=33.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+..+|+|||||++||++|..|++.|++|+|||+++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 457899999999999999999999999999999864
No 70
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.52 E-value=2e-06 Score=93.31 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=36.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCce
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRI 178 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~i 178 (661)
..||+|||||++|+++|++|+++ |++|+|+|+...+|+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~a 43 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQ 43 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccc
Confidence 36899999999999999999999 99999999998877643
No 71
>PRK05868 hypothetical protein; Validated
Probab=98.50 E-value=1.2e-06 Score=94.25 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=33.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
++|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999998764
No 72
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.48 E-value=2.7e-06 Score=94.25 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARER 173 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~ 173 (661)
.....||+|||||++||++|++|+++ |.+|+|||++..
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 45568999999999999999999998 999999999754
No 73
>PRK06753 hypothetical protein; Provisional
Probab=98.45 E-value=2.3e-06 Score=92.17 Aligned_cols=36 Identities=47% Similarity=0.653 Sum_probs=33.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.+|+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 379999999999999999999999999999998764
No 74
>PRK06847 hypothetical protein; Provisional
Probab=98.44 E-value=3.2e-06 Score=91.02 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=34.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
+.++|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3578999999999999999999999999999998764
No 75
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.43 E-value=1.6e-06 Score=94.68 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=32.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG-IEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~~G 175 (661)
.+|+|||||++||++|..|+++| ++|+|||+++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 37999999999999999999998 5999999987764
No 76
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.43 E-value=3.4e-06 Score=91.51 Aligned_cols=37 Identities=35% Similarity=0.702 Sum_probs=34.4
Q ss_pred EEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 143 ~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+|||||+|||+||..|++.|++|+|+|+++.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999987543
No 77
>PRK08013 oxidoreductase; Provisional
Probab=98.41 E-value=3.1e-06 Score=92.09 Aligned_cols=36 Identities=39% Similarity=0.557 Sum_probs=33.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..+|+||||||+||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 479999999999999999999999999999999864
No 78
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.39 E-value=1.7e-07 Score=98.13 Aligned_cols=52 Identities=33% Similarity=0.654 Sum_probs=44.4
Q ss_pred ccCCCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceecc
Q psy6038 130 RITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181 (661)
Q Consensus 130 ~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~ 181 (661)
+.........++|+|||||+|||+||..|++.|++|.++|+++.+|||...+
T Consensus 115 ~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 115 PLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred ChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 3333334567899999999999999999999999999999999999996543
No 79
>PRK06184 hypothetical protein; Provisional
Probab=98.39 E-value=3.9e-06 Score=94.14 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=33.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..+|+||||||+||++|..|++.|++|+|+|+++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 478999999999999999999999999999998765
No 80
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.38 E-value=2.3e-06 Score=92.63 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=31.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..+|+||||||+||++|..|++.|++|+|+|++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 478999999999999999999999999999998
No 81
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.38 E-value=3.7e-07 Score=100.38 Aligned_cols=43 Identities=49% Similarity=0.670 Sum_probs=40.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
...++|+|||||+|||+||++|.+.|++|+|||+++.+||.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 4468999999999999999999999999999999999999764
No 82
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=6.8e-07 Score=89.48 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=53.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCC--c-cccccccEEEeCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS--N-YVADLGAMVVTGLGG 200 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~--~-~~~d~G~~~i~~~~~ 200 (661)
.|.+|||||++|+..|..|++.|++|+|+|+++.+||.+.+...+ | .+.-.|+|++|-...
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~ 65 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNK 65 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCch
Confidence 589999999999999999999999999999999999999997764 3 345689999985543
No 83
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.37 E-value=3.8e-06 Score=91.86 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=33.2
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+|+|||||++||++|++|++.|++|+|+|+...+|.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~ 37 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL 37 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence 799999999999999999999999999999866554
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.32 E-value=1.4e-05 Score=86.15 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..||+|||||++|+++|++|++.|++|+|+|+....++
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~ 40 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQ 40 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCC
Confidence 57899999999999999999999999999999876543
No 85
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.32 E-value=4.9e-06 Score=90.59 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=31.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~ 173 (661)
+||+||||||+||++|..|++.| ++|+|+|+++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 68999999999999999999996 99999999875
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.31 E-value=1e-06 Score=89.39 Aligned_cols=41 Identities=37% Similarity=0.572 Sum_probs=38.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+|||||+|||+||++|++.|++|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 45799999999999999999999999999999999998854
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.30 E-value=1.1e-06 Score=88.89 Aligned_cols=41 Identities=41% Similarity=0.602 Sum_probs=38.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+|||||+|||+||+.|++.|++|+|+|++..+||-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46799999999999999999999999999999999998754
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.29 E-value=1.2e-05 Score=93.18 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=35.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..+|+|||||++|+++|++|++.|++|+|+|+...+|+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ 297 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQ 297 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccc
Confidence 36999999999999999999999999999999977664
No 89
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.29 E-value=2.1e-05 Score=87.08 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=35.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGG 176 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~GG 176 (661)
....||+|||||+.|+++|++|++.+ .+|+|+|+.+.+|.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 45689999999999999999999963 69999999987653
No 90
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.29 E-value=2.7e-05 Score=84.86 Aligned_cols=51 Identities=35% Similarity=0.379 Sum_probs=39.3
Q ss_pred CCccccCCCCCCCCCcEEEEccChHHHHHHHHHHHC-CC-cEEEEcCCCCCCC
Q psy6038 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQF-GI-EVVVLEARERVGG 176 (661)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~-g~-~v~v~e~~~~~GG 176 (661)
++.+....+......||+|||||++|+++|++|++. |. +|+|+|++.-.+|
T Consensus 17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 343344444455678999999999999999999995 95 9999999864333
No 91
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.28 E-value=0.00017 Score=77.61 Aligned_cols=34 Identities=32% Similarity=0.710 Sum_probs=32.2
Q ss_pred cEEEEccChHHHHHHHHH--HHCCCcEEEEcCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHM--EQFGIEVVVLEARERV 174 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l--~~~g~~v~v~e~~~~~ 174 (661)
||||||||+|||++|++| ++.|.+|+|+|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999 8889999999998877
No 92
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.27 E-value=1e-06 Score=96.79 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCCCCCcEEEEccChHHHHHHHHHHH--CCCcEEEEcCCCCCCCceec
Q psy6038 135 PVKKSGKVIVIGAGISGLAAARHMEQ--FGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 135 ~~~~~~~v~iiG~G~aGl~aa~~l~~--~g~~v~v~e~~~~~GG~i~t 180 (661)
+....++|+|||||||||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 34567899999999999999999987 79999999999999999774
No 93
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.27 E-value=8e-07 Score=96.43 Aligned_cols=43 Identities=33% Similarity=0.560 Sum_probs=39.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+||||||||++||+.|+++|++|+|+|+++.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4689999999999999999999999999999999999976543
No 94
>PRK06834 hypothetical protein; Provisional
Probab=98.25 E-value=1.3e-05 Score=89.32 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=33.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~ 38 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQ 38 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 478999999999999999999999999999998753
No 95
>PRK09897 hypothetical protein; Provisional
Probab=98.25 E-value=1.8e-05 Score=88.07 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=36.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCC-Cceec
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVG-GRIVT 180 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~G-G~i~t 180 (661)
++|+|||||++|+++|.+|.+.+ .+|+|+|++..+| |+.++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999998865 4899999999999 66554
No 96
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.25 E-value=1.1e-05 Score=91.19 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=36.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
....+|+||||||+||++|..|++.|++|+|+|++..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999998764
No 97
>KOG1399|consensus
Probab=98.22 E-value=1.2e-06 Score=94.78 Aligned_cols=42 Identities=50% Similarity=0.642 Sum_probs=39.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
..++|+|||||+|||++|+.|.+.|++|+||||.+.+||...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 468999999999999999999999999999999999999754
No 98
>PLN02661 Putative thiazole synthesis
Probab=98.19 E-value=3e-06 Score=88.24 Aligned_cols=43 Identities=26% Similarity=0.480 Sum_probs=38.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~~~~~GG~i~ 179 (661)
....||+|||||++||+||+.|++. |++|+|+|+...+||..+
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 4467999999999999999999986 899999999999988544
No 99
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.18 E-value=5.1e-05 Score=83.81 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~ 177 (661)
....||+|||||++|+++|+.|++. |.+|+|+|+.+.+|-.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~ 46 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIE 46 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchh
Confidence 3456999999999999999999998 8999999997777753
No 100
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.2e-06 Score=93.98 Aligned_cols=55 Identities=38% Similarity=0.510 Sum_probs=47.6
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCc-EEEEcCCCCCCCceeccCCCcccccc
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVTFKKSNYVADL 190 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~~~~GG~i~t~~~~~~~~d~ 190 (661)
.....+|+|||||+|||++|+.|.+.|.. ++||||++++||-.+..+.++...+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~ 60 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDS 60 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECC
Confidence 34578999999999999999999999998 99999999999987776666655443
No 101
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.14 E-value=1.8e-06 Score=96.34 Aligned_cols=41 Identities=44% Similarity=0.663 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.++|+|||||+|||+||..|.+.|++|++||+++.+||..+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 37899999999999999999999999999999999999864
No 102
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.14 E-value=2.8e-06 Score=92.13 Aligned_cols=44 Identities=32% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHH-HCCCcEEEEcCCCCCCCceec
Q psy6038 137 KKSGKVIVIGAGISGLAAARHME-QFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~-~~g~~v~v~e~~~~~GG~i~t 180 (661)
...++|+|||||||||.||.+|. +.|++|+|||+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 45688999999999999999765 679999999999999999775
No 103
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.14 E-value=2.7e-05 Score=72.82 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=32.6
Q ss_pred ccCce-eeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccC
Q psy6038 418 EGLDV-HFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP 464 (661)
Q Consensus 418 ~~L~I-~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP 464 (661)
.++.| +.+.+|+.|...+++..|.+.+ |..+.||+||+|+-
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~------g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTAD------GQSIRADAVVLATG 154 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECC------CCEEEeCEEEECCC
Confidence 34443 3577999999999998887765 78899999999974
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.10 E-value=2.9e-06 Score=82.84 Aligned_cols=38 Identities=53% Similarity=0.786 Sum_probs=31.9
Q ss_pred EEEccChHHHHHHHHHHHCCCc-EEEEcCCCCCCCceec
Q psy6038 143 IVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVT 180 (661)
Q Consensus 143 ~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~~~~GG~i~t 180 (661)
+|||||++||++|.+|.+.|.+ |+|+|+++.+||.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999998654
No 105
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.04 E-value=0.00024 Score=76.41 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=38.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCC----CcEEEEcCCCCCCCceeccC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFG----IEVVVLEARERVGGRIVTFK 182 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g----~~v~v~e~~~~~GG~i~t~~ 182 (661)
.+++=|||+|+|+|+||.+|.+-| -+|+|||+.+.+||-+....
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 467889999999999999999964 59999999999999876654
No 106
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.04 E-value=4.3e-06 Score=92.72 Aligned_cols=42 Identities=33% Similarity=0.496 Sum_probs=39.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
..+||+|||||++|++||++|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 358999999999999999999999999999999999999764
No 107
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=4.6e-06 Score=92.48 Aligned_cols=41 Identities=37% Similarity=0.622 Sum_probs=38.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+||+||||||||++||..+++.|++|+|+|+++.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 47999999999999999999999999999999889999864
No 108
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.99 E-value=4.6e-06 Score=88.65 Aligned_cols=36 Identities=39% Similarity=0.583 Sum_probs=31.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.+|+||||||+||+||..|+++|++|+|+|+++.+-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 589999999999999999999999999999987654
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.99 E-value=6.5e-06 Score=91.34 Aligned_cols=40 Identities=38% Similarity=0.620 Sum_probs=37.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
+||+|||||++|++||++|++.|++|+|+|+ +.+||.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 6899999999999999999999999999999 899998753
No 110
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.99 E-value=6.3e-06 Score=90.92 Aligned_cols=41 Identities=37% Similarity=0.678 Sum_probs=37.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+.+||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 3589999999999999999999999999999984 6899764
No 111
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.99 E-value=7e-06 Score=85.30 Aligned_cols=40 Identities=38% Similarity=0.595 Sum_probs=36.3
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
+||+|||||+|||+||..|++.|++|+|+|+.+ +||++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 489999999999999999999999999999886 7887653
No 112
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.97 E-value=6.7e-06 Score=90.71 Aligned_cols=40 Identities=43% Similarity=0.630 Sum_probs=37.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+||+||||||+|++||.++++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 47999999999999999999999999999998 58999865
No 113
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=9.4e-06 Score=88.73 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=35.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
...++|+|||||++||++|..|++.|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 44689999999999999999999999999999999865
No 114
>KOG2404|consensus
Probab=97.96 E-value=0.0001 Score=73.96 Aligned_cols=37 Identities=38% Similarity=0.666 Sum_probs=35.4
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
.|||||+|+|||+|+..+..+|-.|+++|+...+||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 5999999999999999999999899999999999995
No 115
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.95 E-value=7.9e-06 Score=90.00 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=37.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC-CCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER-VGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~-~GG~i~ 179 (661)
.+||+|||||+||++||..|++.|++|+|+|+.+. +||.|.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 57999999999999999999999999999999875 699653
No 116
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=8.9e-06 Score=90.26 Aligned_cols=42 Identities=38% Similarity=0.597 Sum_probs=38.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+|||||+||++||..|++.|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 45899999999999999999999999999999877 9997643
No 117
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.93 E-value=9.5e-06 Score=88.89 Aligned_cols=39 Identities=33% Similarity=0.549 Sum_probs=33.2
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
||||||||+||++||..+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999999754
No 118
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.92 E-value=0.00069 Score=73.30 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=48.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCC---------------------ccccccccEEEe
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS---------------------NYVADLGAMVVT 196 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~---------------------~~~~d~G~~~i~ 196 (661)
..+||||+|.|+.--..|..|++.|.+|+.+|+++.-||...++.+. .+.+|+-..++.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 46899999999999998889999999999999999999997775421 245777777775
Q ss_pred CCCCChhhHHHHhhCh
Q psy6038 197 GLGGNPINILARQINM 212 (661)
Q Consensus 197 ~~~~~~~~~l~~~lgl 212 (661)
.. .++..++-+-++
T Consensus 83 a~--g~LV~lLi~S~V 96 (438)
T PF00996_consen 83 AR--GPLVKLLISSGV 96 (438)
T ss_dssp TT--SHHHHHHHHCTG
T ss_pred cc--CHHHHHHHhCCc
Confidence 43 345555555554
No 119
>PRK10262 thioredoxin reductase; Provisional
Probab=97.91 E-value=1.2e-05 Score=84.61 Aligned_cols=43 Identities=26% Similarity=0.503 Sum_probs=37.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
...++|+|||||||||+||..|++.|++|+++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 45789999999999999999999999999999954 67887643
No 120
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.1e-05 Score=89.69 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=38.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+|||||++|++||.+|++.|++|+|+|+. .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4689999999999999999999999999999985 88998753
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.90 E-value=1.2e-05 Score=91.05 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=38.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+|||||+|||+||.+|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3589999999999999999999999999999995 78998753
No 122
>PRK06116 glutathione reductase; Validated
Probab=97.90 E-value=9.9e-06 Score=89.55 Aligned_cols=40 Identities=40% Similarity=0.731 Sum_probs=36.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 579999999999999999999999999999985 8999754
No 123
>KOG2820|consensus
Probab=97.90 E-value=0.00025 Score=71.93 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=35.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.+..+|+|||||+-|++||++|++.|.++++||+-+-+-
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 456789999999999999999999999999999987654
No 124
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.89 E-value=1e-05 Score=87.35 Aligned_cols=35 Identities=26% Similarity=0.596 Sum_probs=33.4
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
||+|||||++||++|+.|+++|++|+|+|++..++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 69999999999999999999999999999998765
No 125
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=1.3e-05 Score=89.03 Aligned_cols=42 Identities=33% Similarity=0.559 Sum_probs=38.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
..+||+|||||++|++||..|++.|++|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 358999999999999999999999999999999889999653
No 126
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.88 E-value=1.4e-05 Score=87.76 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=34.1
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
....+||+||||||||++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456899999999999999999999999999999975
No 127
>PRK07045 putative monooxygenase; Reviewed
Probab=97.88 E-value=1.2e-05 Score=87.15 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=34.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
...+|+||||||+||+||..|+++|++|+|+|+++.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4578999999999999999999999999999999865
No 128
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.88 E-value=1.3e-05 Score=88.25 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=37.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC-CCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE-RVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~-~~GG~i~ 179 (661)
.+||+|||||++|++||.+|+++|++|+|+|+.+ .+||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 4799999999999999999999999999999976 4798764
No 129
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.87 E-value=1.3e-05 Score=86.92 Aligned_cols=32 Identities=44% Similarity=0.607 Sum_probs=30.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
+||+||||||||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999997
No 130
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.87 E-value=1.4e-05 Score=86.74 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=33.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.||+||||||||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 479999999999999999999999999999986544
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.87 E-value=1.3e-05 Score=86.92 Aligned_cols=37 Identities=41% Similarity=0.689 Sum_probs=34.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
..+|+|||||++||++|..|++.|++|+|+|+++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 5789999999999999999999999999999997654
No 132
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.86 E-value=1.5e-05 Score=86.34 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=34.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
....+|+||||||+||++|+.|+++|++|+|+|+++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45679999999999999999999999999999998754
No 133
>PRK14694 putative mercuric reductase; Provisional
Probab=97.86 E-value=1.7e-05 Score=88.10 Aligned_cols=42 Identities=33% Similarity=0.486 Sum_probs=38.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+.+||+|||||+||++||..|++.|++|+|+|+. .+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 46789999999999999999999999999999985 7899765
No 134
>PLN02985 squalene monooxygenase
Probab=97.85 E-value=2.3e-05 Score=87.55 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 132 ~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.+.......||+|||||++|+++|..|++.|++|+|+|+...
T Consensus 36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 344456678999999999999999999999999999999754
No 135
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.85 E-value=1.5e-05 Score=86.26 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=34.1
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
||+|||||+||+++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 699999999999999999999999999999987775
No 136
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.83 E-value=1.8e-05 Score=85.73 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
+..+|+|||||++||++|..|++.|++|+|+|+++.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 35789999999999999999999999999999998754
No 137
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.83 E-value=0.00047 Score=75.68 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=38.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
...||+|||||++|+.+|+.++.+|++|+++|+++...|.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 6789999999999999999999999999999999999995
No 138
>PRK06370 mercuric reductase; Validated
Probab=97.82 E-value=1.9e-05 Score=87.55 Aligned_cols=41 Identities=34% Similarity=0.533 Sum_probs=36.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
..+||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 3589999999999999999999999999999986 5677654
No 139
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=1.9e-05 Score=87.64 Aligned_cols=40 Identities=40% Similarity=0.633 Sum_probs=37.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 47999999999999999999999999999999 78999754
No 140
>PRK09126 hypothetical protein; Provisional
Probab=97.82 E-value=1.8e-05 Score=85.74 Aligned_cols=37 Identities=30% Similarity=0.575 Sum_probs=34.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
..+|+||||||+||++|..|+++|++|+|+|+.+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 39 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA 39 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 5789999999999999999999999999999998753
No 141
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.82 E-value=1.8e-05 Score=85.73 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=33.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..+|+||||||+||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899999999999999999999999999999985
No 142
>KOG2415|consensus
Probab=97.81 E-value=1.9e-05 Score=81.56 Aligned_cols=44 Identities=34% Similarity=0.635 Sum_probs=38.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC------CCcEEEEcCCCCCCCceec
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF------GIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~------g~~v~v~e~~~~~GG~i~t 180 (661)
....||+|||||||||+||.+|.+. -.+|+|+|+...+||.+-+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 4568999999999999999999874 4589999999999998654
No 143
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.81 E-value=2e-05 Score=85.67 Aligned_cols=36 Identities=31% Similarity=0.596 Sum_probs=33.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
+++|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 478999999999999999999999999999998754
No 144
>KOG2614|consensus
Probab=97.80 E-value=2.2e-05 Score=81.91 Aligned_cols=38 Identities=50% Similarity=0.786 Sum_probs=34.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..+|||||||++||++|..|.++|++|+|||++..+=|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 46899999999999999999999999999999877654
No 145
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.79 E-value=2.2e-05 Score=87.18 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=35.3
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+||+||||||+|++||..|++.|++|+|+|+.. +||.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 489999999999999999999999999999875 777653
No 146
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.79 E-value=2e-05 Score=85.94 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=32.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.++|+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 46899999999999999999999999999999874
No 147
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=2.4e-05 Score=86.88 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=36.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
.+||+|||||++|++||.+|++.|++|+|+|+. .+||.|..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 479999999999999999999999999999984 77887643
No 148
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.79 E-value=2.8e-05 Score=87.13 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=38.3
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
....||||||+|.|||+||+.+++.|.+|+|+|+.+.+||.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 34689999999999999999999999999999999999984
No 149
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.78 E-value=2.4e-05 Score=84.57 Aligned_cols=39 Identities=46% Similarity=0.658 Sum_probs=36.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..++|+|||||++||++|++|++.|.+|+|+|++...+|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 568999999999999999999999999999999887664
No 150
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.77 E-value=2.1e-05 Score=86.09 Aligned_cols=36 Identities=44% Similarity=0.775 Sum_probs=33.3
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
||+|||+|+|||+||..++++|.+|+|+|+.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 799999999999999999999999999999999999
No 151
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.77 E-value=2.7e-05 Score=93.85 Aligned_cols=43 Identities=33% Similarity=0.602 Sum_probs=40.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..++|+|||||||||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4579999999999999999999999999999999999998864
No 152
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.76 E-value=2.6e-05 Score=84.39 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=32.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..||+||||||+||++|..|+++|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3689999999999999999999999999999875
No 153
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.76 E-value=2.1e-05 Score=84.86 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=32.1
Q ss_pred cEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG-IEVVVLEARERV 174 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~~ 174 (661)
||+||||||+||++|..|+++| ++|+|+|+.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 6999999999999999999999 999999998654
No 154
>PRK07538 hypothetical protein; Provisional
Probab=97.76 E-value=2.5e-05 Score=85.37 Aligned_cols=35 Identities=49% Similarity=0.690 Sum_probs=32.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
++|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 47999999999999999999999999999998754
No 155
>PTZ00058 glutathione reductase; Provisional
Probab=97.75 E-value=3.5e-05 Score=86.69 Aligned_cols=44 Identities=34% Similarity=0.495 Sum_probs=38.9
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
...++||+|||||++|++||..+++.|.+|+|+|+. .+||.|..
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 345689999999999999999999999999999986 78997643
No 156
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.75 E-value=2.8e-05 Score=84.16 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=34.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
+..||+|||||++||++|..|+++|++|+|+|+.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3578999999999999999999999999999998764
No 157
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.74 E-value=2.7e-05 Score=84.42 Aligned_cols=35 Identities=43% Similarity=0.641 Sum_probs=33.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..+|+||||||+||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 46899999999999999999999999999999985
No 158
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.8e-05 Score=80.54 Aligned_cols=42 Identities=36% Similarity=0.540 Sum_probs=34.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+.+||+|||||||||+||.++++.|.+++|++....+||...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~ 43 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLT 43 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccc
Confidence 357999999999999999999999999555555667776543
No 159
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.74 E-value=2.9e-05 Score=85.59 Aligned_cols=37 Identities=41% Similarity=0.708 Sum_probs=35.6
Q ss_pred cEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCCCCCc
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG-IEVVVLEARERVGGR 177 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~~GG~ 177 (661)
||+|||||+|||+||..++++| .+|+|+|+.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence 6999999999999999999999 999999999999985
No 160
>PRK14727 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.2e-05 Score=86.16 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=39.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+|||||++|++||..|++.|.+|+|+|+.+.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 4689999999999999999999999999999999999998653
No 161
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.72 E-value=3.5e-05 Score=82.64 Aligned_cols=37 Identities=41% Similarity=0.615 Sum_probs=33.2
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.||+|||||++|+++|++|++.|++|+|+|+.....|
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~g 37 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQG 37 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 4899999999999999999999999999999875333
No 162
>PRK13748 putative mercuric reductase; Provisional
Probab=97.71 E-value=3.2e-05 Score=88.01 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=37.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
..+||+|||||++|++||..|++.|.+|+|+|+. .+||-|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3689999999999999999999999999999987 8999764
No 163
>PRK07121 hypothetical protein; Validated
Probab=97.71 E-value=3.7e-05 Score=85.92 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=38.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+|||||.|||+||..+++.|.+|+|+||....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46899999999999999999999999999999999999853
No 164
>PRK08244 hypothetical protein; Provisional
Probab=97.70 E-value=3.7e-05 Score=86.06 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..+|+||||||+||++|..|++.|++|+|+|+++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 468999999999999999999999999999998754
No 165
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.69 E-value=4.1e-05 Score=81.91 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||++|+.||+.|++.|++|+|+|+++...-
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 36899999999999999999999999999999887653
No 166
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.69 E-value=4e-05 Score=85.12 Aligned_cols=40 Identities=40% Similarity=0.547 Sum_probs=36.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC--CCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER--VGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~--~GG~ 177 (661)
...||+|||+|+|||+||..+++.|.+|+|+|+.+. .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 457999999999999999999999999999999974 6763
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.69 E-value=4.3e-05 Score=85.86 Aligned_cols=41 Identities=34% Similarity=0.554 Sum_probs=37.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
...++|+|||||+|||+||.+|++.|++|+|++. ++||++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 4468999999999999999999999999999976 4999875
No 168
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.69 E-value=0.00042 Score=76.18 Aligned_cols=33 Identities=48% Similarity=0.764 Sum_probs=30.3
Q ss_pred EEccChHHHHHHHHHHHCCCcEEEEcCCCC--CCC
Q psy6038 144 VIGAGISGLAAARHMEQFGIEVVVLEARER--VGG 176 (661)
Q Consensus 144 iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~--~GG 176 (661)
|||+|.|||+||..+++.|.+|+|+||.+. .||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg 35 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGG 35 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCc
Confidence 799999999999999999999999999874 455
No 169
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.69 E-value=4.7e-05 Score=85.31 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
..+||+|||||++|+++|+.|++.|++|+|+|+++..+|-
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 4589999999999999999999999999999999777764
No 170
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.68 E-value=4.8e-05 Score=85.19 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=36.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
....||+|||||++|+++|++|+++|++|+|+|+.+..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 3458999999999999999999999999999999976665
No 171
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.67 E-value=3.7e-05 Score=83.35 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=33.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..+||+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 458999999999999999999999999999999763
No 172
>PRK06185 hypothetical protein; Provisional
Probab=97.67 E-value=4.6e-05 Score=83.06 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 568999999999999999999999999999999864
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.67 E-value=4.7e-05 Score=85.53 Aligned_cols=41 Identities=29% Similarity=0.512 Sum_probs=37.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
...++|+|||||+|||+||.+|++.|++|+|++. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4568999999999999999999999999999974 6999865
No 174
>PLN02463 lycopene beta cyclase
Probab=97.67 E-value=5.3e-05 Score=83.04 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=34.3
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.....||+|||||+|||++|..|++.|++|+|+|+++.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 44567999999999999999999999999999998753
No 175
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.66 E-value=6.1e-05 Score=80.40 Aligned_cols=43 Identities=40% Similarity=0.548 Sum_probs=39.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
...++|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 4567999999999999999999999999999999999999764
No 176
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.66 E-value=4e-05 Score=83.14 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=32.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC---CCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF---GIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~---g~~v~v~e~~~ 172 (661)
+..+|+||||||+||++|+.|+++ |++|+|+|+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 357899999999999999999998 99999999964
No 177
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.66 E-value=5.4e-05 Score=85.87 Aligned_cols=38 Identities=37% Similarity=0.572 Sum_probs=35.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
....+|+||||||+||++|..|++.|++|+|+|+++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 45689999999999999999999999999999999865
No 178
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=4.7e-05 Score=84.72 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=36.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcC------CCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEA------RERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~------~~~~GG~i~ 179 (661)
.+||+|||||+||++||.+|++.|.+|+|+|+ ...+||.|.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 57999999999999999999999999999998 356677653
No 179
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.65 E-value=4.5e-05 Score=85.23 Aligned_cols=41 Identities=32% Similarity=0.547 Sum_probs=36.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC--------CCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE--------RVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~--------~~GG~i~ 179 (661)
.+||+|||||+||++||.+|++.|.+|+|+|+.. .+||.|-
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 4799999999999999999999999999999631 4888763
No 180
>KOG2960|consensus
Probab=97.64 E-value=2.6e-05 Score=73.46 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=64.5
Q ss_pred cchhhHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCceeccC
Q psy6038 105 SEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRIVTFK 182 (661)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~i~t~~ 182 (661)
..||.-..+.|-++++-+... ......||+|||||.+||+|||...++ ..+|.|+|..-.+||-.|
T Consensus 51 FaPIrEStVSRaMTrRYf~Dl---------dkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW--- 118 (328)
T KOG2960|consen 51 FAPIRESTVSRAMTRRYFKDL---------DKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW--- 118 (328)
T ss_pred ccchhHHHHHHHHHHHHHHHH---------HhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc---
Confidence 445544455565655544431 112356899999999999999999865 469999999999998655
Q ss_pred CCccccccccEEEeCC-CCChhhHHHHhhChhhh
Q psy6038 183 KSNYVADLGAMVVTGL-GGNPINILARQINMELL 215 (661)
Q Consensus 183 ~~~~~~d~G~~~i~~~-~~~~~~~l~~~lgl~~~ 215 (661)
+|++.+... -..|-..+++++|+.+.
T Consensus 119 -------LGGQLFSAMvvRKPAhLFL~EigvpYe 145 (328)
T KOG2960|consen 119 -------LGGQLFSAMVVRKPAHLFLQEIGVPYE 145 (328)
T ss_pred -------ccchhhhhhhhcChHHHHHHHhCCCcc
Confidence 566655432 24566778888888754
No 181
>PRK07190 hypothetical protein; Provisional
Probab=97.63 E-value=5.4e-05 Score=84.23 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=34.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 479999999999999999999999999999999875
No 182
>PRK06126 hypothetical protein; Provisional
Probab=97.62 E-value=6.2e-05 Score=85.36 Aligned_cols=36 Identities=25% Similarity=0.550 Sum_probs=33.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...+|+||||||+||++|..|++.|++|+|+|+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457899999999999999999999999999998864
No 183
>PRK11445 putative oxidoreductase; Provisional
Probab=97.62 E-value=5.2e-05 Score=80.95 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
+||+||||||||+++|+.|++. ++|+|+|+++..+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~ 36 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCG 36 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccc
Confidence 6899999999999999999999 9999999998653
No 184
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.62 E-value=5e-05 Score=81.84 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=31.8
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 5799999999999999999999999999999753
No 185
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.62 E-value=5.2e-05 Score=86.11 Aligned_cols=36 Identities=39% Similarity=0.593 Sum_probs=33.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.+..+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999975
No 186
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.61 E-value=6.9e-05 Score=85.32 Aligned_cols=42 Identities=40% Similarity=0.654 Sum_probs=38.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
...||+|||||++||+||..++++|.+|+|+||....||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 467999999999999999999999999999999999999643
No 187
>PLN02507 glutathione reductase
Probab=97.61 E-value=6.6e-05 Score=83.83 Aligned_cols=43 Identities=40% Similarity=0.526 Sum_probs=37.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcC---------CCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEA---------RERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~---------~~~~GG~i~ 179 (661)
...+||+|||||++|++||.++++.|.+|+|+|+ .+.+||.|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 3468999999999999999999999999999996 356888764
No 188
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.60 E-value=5.7e-05 Score=82.33 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=31.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|+||||||+||++|..|++.|++|+|+|++
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 468999999999999999999999999999996
No 189
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.59 E-value=6.5e-05 Score=84.31 Aligned_cols=40 Identities=33% Similarity=0.592 Sum_probs=37.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+||||| +||+||.++++.|.+|+|+|+.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 36799999999 99999999999999999999999989853
No 190
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=7.3e-05 Score=84.69 Aligned_cols=41 Identities=37% Similarity=0.699 Sum_probs=38.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC--CCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE--RVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~--~~GG~i 178 (661)
...||+|||+|.|||+||..+++.|.+|+|+|+.+ .+||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 35799999999999999999999999999999999 889854
No 191
>PTZ00367 squalene epoxidase; Provisional
Probab=97.58 E-value=7.6e-05 Score=84.09 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=34.0
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.....+|+|||||++|+++|..|+++|++|+|+|+..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3456899999999999999999999999999999975
No 192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.58 E-value=7e-05 Score=83.76 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=35.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC-CCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR-ERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~-~~~GG~ 177 (661)
..+||+|||||+||+.||..+++.|.+|+++|++ +.+|++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 3589999999999999999999999999999998 477753
No 193
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.57 E-value=8.2e-05 Score=81.08 Aligned_cols=43 Identities=42% Similarity=0.665 Sum_probs=39.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+|++|||||++|.+||.++++.|.+|.++|+...+||-|-.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 4689999999999999999999999999999999999997653
No 194
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.56 E-value=8.4e-05 Score=83.98 Aligned_cols=39 Identities=28% Similarity=0.538 Sum_probs=35.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||+.|+++|+.|++.|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 357999999999999999999999999999999765544
No 195
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.56 E-value=7.7e-05 Score=80.06 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=33.9
Q ss_pred cEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG 176 (661)
||+|||||+|||++|+.|++. |++|+|+|+.+..||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 699999999999999999987 999999999987776
No 196
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.55 E-value=6.9e-05 Score=82.49 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=31.3
Q ss_pred CcEEEEccChHHHHHHHHHHH----CCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQ----FGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~----~g~~v~v~e~~~~ 173 (661)
+||+||||||+||++|..|++ .|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 479999999999999999999 8999999999653
No 197
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.55 E-value=7.6e-05 Score=80.36 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=34.1
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+|+|||||++|+.||..|++.|++|+|+|+++.+|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999988765
No 198
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.54 E-value=8.8e-05 Score=82.44 Aligned_cols=43 Identities=33% Similarity=0.533 Sum_probs=37.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcCC--------CCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEAR--------ERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~~--------~~~GG~i~t 180 (661)
+.+||+|||||++|.+||..+++. |.+|+|+|+. +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 468999999999999999999997 9999999984 578987643
No 199
>PRK12839 hypothetical protein; Provisional
Probab=97.54 E-value=0.0001 Score=83.55 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=40.1
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.....||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 34578999999999999999999999999999999999999754
No 200
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.53 E-value=9.7e-05 Score=71.81 Aligned_cols=33 Identities=33% Similarity=0.618 Sum_probs=30.2
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
||+|||||+|||+||.+|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999976544
No 201
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.53 E-value=9.4e-05 Score=84.13 Aligned_cols=40 Identities=30% Similarity=0.559 Sum_probs=37.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
...||+|||+|.|||+||..+++.|.+|+|+|+.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3579999999999999999999999999999999999984
No 202
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.50 E-value=0.0033 Score=67.16 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=35.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~ 177 (661)
+..||++||||+.|-+.+..|++. ..++.|+||.+.++.-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 468999999999999999999986 4699999999999864
No 203
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.49 E-value=0.00012 Score=83.00 Aligned_cols=41 Identities=32% Similarity=0.613 Sum_probs=38.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+|||+|.+||+||..|++.|.+|+|+|+....||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36799999999999999999999999999999999999854
No 204
>PLN02546 glutathione reductase
Probab=97.48 E-value=0.00011 Score=82.75 Aligned_cols=43 Identities=35% Similarity=0.494 Sum_probs=36.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcC---------CCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEA---------RERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~---------~~~~GG~i~ 179 (661)
...+||+|||||++|+.||..+++.|.+|+|+|+ ...+||.|.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~ 128 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV 128 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence 3458999999999999999999999999999996 245677654
No 205
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.47 E-value=0.0001 Score=81.74 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=34.2
Q ss_pred CcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG 176 (661)
.||+|||||++|+++|+.|++. |.+|+|||+.+.+|.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~ 39 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAA 39 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchh
Confidence 4899999999999999999997 999999999887774
No 206
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.46 E-value=0.0002 Score=58.59 Aligned_cols=35 Identities=34% Similarity=0.666 Sum_probs=33.8
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
+|+|||||+.|+-+|..|++.|.+|+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999999987
No 207
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.46 E-value=0.00012 Score=83.36 Aligned_cols=38 Identities=32% Similarity=0.508 Sum_probs=35.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+.||+|||+|+|||+||..+++.|.+|+|+|+....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 45999999999999999999999999999999988776
No 208
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.45 E-value=0.00014 Score=83.40 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=35.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||+.|.++|+.|++.|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999976666
No 209
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.41 E-value=0.00014 Score=83.44 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=33.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~~~~ 173 (661)
....+|+||||||+||++|..|++. |++|+|+|+++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 3468999999999999999999995 999999999864
No 210
>KOG1800|consensus
Probab=97.41 E-value=0.00018 Score=73.82 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=40.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCceeccC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRIVTFK 182 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~i~t~~ 182 (661)
..+++|+|||+||||+.+|+.|.++ +.+|.|+|+.+.++|.++.--
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence 4456999999999999999999884 689999999999999987533
No 211
>PLN02697 lycopene epsilon cyclase
Probab=97.41 E-value=0.00022 Score=79.57 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
....||+|||||||||++|..|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 34589999999999999999999999999999975
No 212
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.40 E-value=0.00015 Score=81.79 Aligned_cols=40 Identities=30% Similarity=0.536 Sum_probs=37.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
....||+|||||.|||+||..+++.|.+|+|+||....||
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 3468999999999999999999999999999999998877
No 213
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.40 E-value=0.00017 Score=81.62 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=38.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i 178 (661)
...||+|||+|++|++||..+++.|.+|+|+|+.+.+||..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 36799999999999999999999999999999999998853
No 214
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00018 Score=82.65 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=35.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+|+...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 467999999999999999999999999999999887763
No 215
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.40 E-value=0.00021 Score=81.34 Aligned_cols=43 Identities=35% Similarity=0.553 Sum_probs=39.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
....||+|||+|++|++||..++++|++|+|+|+.+.+||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 4578999999999999999999999999999999999999654
No 216
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.40 E-value=0.0027 Score=67.45 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=110.1
Q ss_pred cCCceeeccchhHHHHHHhc--cCceeeCceEEEE-EecCCce---EEEEeCCCCCCCCeEEEeCEEEEccChhhhhhcC
Q psy6038 399 TGSHLTVKKGYACVPTALAE--GLDVHFNSSVTEI-HYNSKGV---TVKTVDPKTGQNETVYTGDRVLCTLPLGILKACI 472 (661)
Q Consensus 399 ~g~~~~v~gG~~~L~~aLa~--~L~I~lnt~V~~I-~~~~~gv---~V~~~~~~~~~~g~~i~AD~VV~TvP~~vL~~~~ 472 (661)
.++.+.|+||+.+|++.|.+ +.+| +|+.|++| ...+++. .|++.+. .+...-.+|.||+|.|+..-...
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~---~~~~~~~yD~VVIAtPl~~~~sn- 191 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSS---SGTESDEYDIVVIATPLQQSFSN- 191 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecC---CCCccccCCEEEECCCcccccCC-
Confidence 35678899999999999986 5589 99999999 4555543 4555432 11334457999999999533310
Q ss_pred CCCCccccCCCCCHHHHHHHHHcCCccccEEEEEccccccccCCCceeeeccCCCCCCceEEEEecCCCc-EEEEEe---
Q psy6038 473 QPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAP-VLLALV--- 548 (661)
Q Consensus 473 ~~~~~i~f~P~Lp~~k~~ai~~l~~g~~~Kv~l~f~~~fW~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~-vL~~~~--- 548 (661)
...+.|+|++.. ..+...++++.|=+- .-+...||.-....-....+... .....+ --++.+
T Consensus 192 --I~~~~~~~~i~~---------~~~~Y~~l~vTlv~~--~lnp~yFgl~~~~~~P~~~IlTt-~~~~~~~~s~~~~~~~ 257 (368)
T PF07156_consen 192 --ITFINFDPPIDI---------PPRPYVHLHVTLVAG--RLNPSYFGLPPPSKVPLETILTT-ENPDLPFNSISIVKSV 257 (368)
T ss_pred --ccccCCCCCCcc---------CCCCcEEEEEEEEec--cCCHhhcCCCCcccCCcceEEEe-CCCCCCCccccccccc
Confidence 012446665521 234566666655332 11234565432211110111111 111110 000000
Q ss_pred ccch---hhhhh-----cc-----c-CCCCCCCCCCceEEEecCCCCCCCCcccCccCCCCCCcchhhhcCCCCCCCCCC
Q psy6038 549 AGEA---ASILE-----DV-----S-IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIP 614 (661)
Q Consensus 549 ~g~~---a~~~~-----~~-----~-~fg~~~~~~p~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~la~p~~~~~~~~ 614 (661)
.+.. ...+. .+ + +|+. ........|. +|.+..|...- .|+. =.+
T Consensus 258 ~~~~~~~~~vyKIFS~~~Lt~~~L~~lF~~-----~~~~~~~~W~-------AYP~~~p~~~~-------~~~~---L~~ 315 (368)
T PF07156_consen 258 NRKTPKGEYVYKIFSPEPLTDEFLSQLFSS-----YSEVKRKEWL-------AYPHYSPPEKF-------PPFK---LHD 315 (368)
T ss_pred CCCCCCCccEEEecCCCcCCHHHHHHHhhc-----cCceeeeeEe-------CCCCCCCCCCC-------CCeE---eeC
Confidence 0000 00000 01 0 4543 2357788883 57655553221 1110 014
Q ss_pred cEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhcC
Q psy6038 615 RLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGA 652 (661)
Q Consensus 615 rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g~ 652 (661)
+||...---+ ...|||-+..+|..+|.-+.+.+.+.
T Consensus 316 glyY~n~iE~--~aStME~sai~akNvA~L~~~~~~~~ 351 (368)
T PF07156_consen 316 GLYYTNAIES--AASTMETSAIAAKNVALLIYDRWNGD 351 (368)
T ss_pred CeeEchhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5665443322 34799999999999999999988773
No 217
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.39 E-value=0.00015 Score=83.12 Aligned_cols=39 Identities=36% Similarity=0.355 Sum_probs=35.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 357999999999999999999999999999999987665
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=0.00016 Score=80.15 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=34.3
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+|+|||||++|++||..|++.|.+|+|+|+. ..||.|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999986 4677654
No 219
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.37 E-value=0.00017 Score=82.09 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=34.6
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 6999999999999999999999999999999887763
No 220
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.37 E-value=0.0002 Score=80.98 Aligned_cols=42 Identities=31% Similarity=0.637 Sum_probs=38.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
....||||||+| +||+||...++.|.+|+|+|+.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 457899999999 899999999999999999999999999543
No 221
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.35 E-value=0.0002 Score=79.89 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=35.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
+||+|||+|++|++||+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 4899999999999999999999999999999999987
No 222
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.35 E-value=0.00018 Score=79.98 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=36.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~i 178 (661)
...||+|||||+.|++.|++|++. |.+|+|+||.+.+|+..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 457999999999999999999985 78999999998877643
No 223
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.34 E-value=0.00021 Score=81.14 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=35.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+||....||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999987666
No 224
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.33 E-value=0.00022 Score=81.53 Aligned_cols=42 Identities=31% Similarity=0.563 Sum_probs=37.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC-CCCCCcee
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR-ERVGGRIV 179 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~-~~~GG~i~ 179 (661)
..+||+|||||++|++||..+++.|.+|+|+|+. +.+||.|.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 3579999999999999999999999999999974 47898754
No 225
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.32 E-value=0.00024 Score=80.97 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..||+|||||.|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 57999999999999999999999999999999987776
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.32 E-value=0.00023 Score=79.04 Aligned_cols=39 Identities=36% Similarity=0.636 Sum_probs=35.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
++|+|||||++|+.||..|+++|.+|+|+|+. .+||.|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 58999999999999999999999999999986 4888764
No 227
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.31 E-value=0.00023 Score=81.11 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
...||+|||||.|||+||..+++.|.+|+|+|+....||.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4579999999999999999999999999999998777663
No 228
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.31 E-value=0.00023 Score=81.57 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+|+....||
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 457999999999999999999999999999999987776
No 229
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.31 E-value=0.00022 Score=78.23 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..||+|||+|.|||+||..++ .|.+|+|+||.+..||
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 579999999999999999985 7999999999998877
No 230
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.30 E-value=0.00036 Score=79.51 Aligned_cols=43 Identities=40% Similarity=0.577 Sum_probs=39.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
....||+|||+|++||+||..++++|.+|+|+|+.+.+||...
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 3467999999999999999999999999999999999999654
No 231
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.29 E-value=0.00025 Score=78.67 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=31.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999999975
No 232
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.29 E-value=0.00024 Score=81.27 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=36.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+||....||
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 467999999999999999999999999999999988776
No 233
>PLN02815 L-aspartate oxidase
Probab=97.28 E-value=0.00028 Score=80.14 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=36.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
....||+|||+|.|||+||..+++.| +|+|+|+....||
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 34579999999999999999999999 9999999999887
No 234
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00027 Score=80.77 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=35.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+||....||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 457999999999999999999999999999999877666
No 235
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.25 E-value=0.00027 Score=83.14 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=32.0
Q ss_pred CcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQF--GIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~ 173 (661)
.+|+|||||||||+||..|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999986
No 236
>PRK06996 hypothetical protein; Provisional
Probab=97.24 E-value=0.00033 Score=76.13 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=33.4
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCC----CcEEEEcCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFG----IEVVVLEARER 173 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g----~~v~v~e~~~~ 173 (661)
....++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 345689999999999999999999987 47999999864
No 237
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.24 E-value=0.00029 Score=79.63 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=35.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
....||+|||+|.|||+||..++ .|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34679999999999999999986 59999999999988873
No 238
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.23 E-value=0.00024 Score=73.84 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=31.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG-IEVVVLEARERVGG 176 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~~GG 176 (661)
+||||||||.+|..+|.+|++.| .+|+|+|+..+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 48999999999999999999998 69999999876654
No 239
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.23 E-value=0.00033 Score=77.95 Aligned_cols=40 Identities=38% Similarity=0.657 Sum_probs=35.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC--------CCCCce
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE--------RVGGRI 178 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~--------~~GG~i 178 (661)
.+||+|||||++|+.||..+++.|.+|+|+|+.. .+||.|
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc 49 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTC 49 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccc
Confidence 4699999999999999999999999999999742 467754
No 240
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.22 E-value=0.00033 Score=78.15 Aligned_cols=38 Identities=39% Similarity=0.568 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
..||+|||+|+|||+||..+++.|. |+|+|+.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4689999999999999999999998 9999999887773
No 241
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.22 E-value=0.0027 Score=75.13 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~~~~G 175 (661)
+++|+|||+|+||+.+|..|.+. +++|+|+++.++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 45899999999999999999764 58999999999876
No 242
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.00031 Score=80.04 Aligned_cols=38 Identities=21% Similarity=0.527 Sum_probs=34.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~GG 176 (661)
..||+|||||+|||+||..+++.| .+|+|+|+....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 468999999999999999999874 89999999987776
No 243
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.21 E-value=0.00033 Score=80.71 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=35.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++.|.+|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 357999999999999999999999999999999987665
No 244
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.21 E-value=0.00031 Score=74.54 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=29.4
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEE-cCCCCCCCc
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVL-EARERVGGR 177 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~-e~~~~~GG~ 177 (661)
||+|||||+||..||+.+++.|.+|+++ +..+.+|..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc
Confidence 7999999999999999999999999999 666666654
No 245
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.20 E-value=0.00033 Score=79.80 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCC---CcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFG---IEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g---~~v~v~e~~~~~GG~ 177 (661)
..||+|||||.|||+||..+++.| .+|+|+|+....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 568999999999999999999998 899999999987773
No 246
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.16 E-value=0.00042 Score=85.02 Aligned_cols=41 Identities=34% Similarity=0.669 Sum_probs=38.3
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
....||+|||+|.|||+||...++.|.+|+|+||.+..||.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 44689999999999999999999999999999999999995
No 247
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.16 E-value=0.00037 Score=79.70 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=33.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~G 175 (661)
..||+|||||.|||+||..+++. |.+|+|+|+....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 57999999999999999999998 99999999987644
No 248
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.13 E-value=0.00043 Score=77.61 Aligned_cols=38 Identities=26% Similarity=0.566 Sum_probs=34.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
..||+|||+|.|||+||..+++ |.+|+|+|+....||-
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5799999999999999999976 9999999999987773
No 249
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.12 E-value=0.00056 Score=69.03 Aligned_cols=41 Identities=37% Similarity=0.718 Sum_probs=35.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC--CCCCCce
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR--ERVGGRI 178 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~--~~~GG~i 178 (661)
...+|+|||||+|||.||..|+.+|++|+|+|.. ..+||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 3578999999999999999999999999999765 4566653
No 250
>PRK08275 putative oxidoreductase; Provisional
Probab=97.09 E-value=0.00049 Score=78.06 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=34.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG 176 (661)
...||+|||||.|||+||..+++. |.+|+|+|+....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 357999999999999999999987 789999999986433
No 251
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.08 E-value=0.00048 Score=78.40 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=34.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG 176 (661)
..||+|||||.|||+||..+++. |.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 46899999999999999999987 479999999988777
No 252
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.08 E-value=0.00043 Score=79.00 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=32.5
Q ss_pred EEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
|+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999986653
No 253
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.05 E-value=0.00056 Score=77.43 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC-CCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER-VGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~-~GG~ 177 (661)
...||+|||||.|||+||..+ +.|.+|+|+|+... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 357999999999999999999 99999999999864 4553
No 254
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.04 E-value=0.00056 Score=77.74 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG~ 177 (661)
..||+|||||+|||+||..++++ |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 46899999999999999999987 5899999999888873
No 255
>KOG1335|consensus
Probab=97.02 E-value=0.00068 Score=69.81 Aligned_cols=43 Identities=33% Similarity=0.561 Sum_probs=40.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+||+|||+||.|..||.+.++.|++.+++|++..+||.|..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999997653
No 256
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00072 Score=68.33 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=30.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
+.+|+|||+|+|||+||.+|+++|.++.|+-+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 579999999999999999999999999998653
No 257
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.00 E-value=0.00074 Score=73.30 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.+||+|||+|++|++||..|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999863
No 258
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.98 E-value=0.0047 Score=72.90 Aligned_cols=34 Identities=12% Similarity=0.401 Sum_probs=30.6
Q ss_pred EEEEccChHHHHHHHHHHHC---CCcEEEEcCCCCCC
Q psy6038 142 VIVIGAGISGLAAARHMEQF---GIEVVVLEARERVG 175 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~---g~~v~v~e~~~~~G 175 (661)
|+|||+|+||++||..|.+. +++|+|+|+.++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 68999999999999998875 57999999999976
No 259
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.98 E-value=0.00081 Score=75.93 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=35.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
...||+|||+|.|||+||..+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 457999999999999999999886 899999999988873
No 260
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.95 E-value=0.00081 Score=76.52 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=31.0
Q ss_pred cEEEEccChHHHHHHHHHH----HCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHME----QFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~----~~g~~v~v~e~~~~ 173 (661)
||+|||||.|||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 78999999999876
No 261
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.89 E-value=0.0011 Score=74.53 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=38.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
..+.||+|||||.|||.||..++++|.+|+|+|+....+|.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 35689999999999999999999999999999999998874
No 262
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.89 E-value=0.001 Score=75.96 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=33.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..||+|||||+|||+||..+++. .+|+|+|+....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 57999999999999999999976 99999999876665
No 263
>PRK02106 choline dehydrogenase; Validated
Probab=96.84 E-value=0.0012 Score=75.13 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=33.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHH-CCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQ-FGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~-~g~~v~v~e~~~~ 173 (661)
..+|+||||||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 35799999999999999999999 8999999999854
No 264
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.78 E-value=0.0012 Score=72.79 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=32.4
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~G 175 (661)
++|+|||||+|||+||..|++.| ++|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 37999999999999999999976 5899999998864
No 265
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.78 E-value=0.014 Score=60.23 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=38.9
Q ss_pred CCCCCCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCCCCCCCcee
Q psy6038 135 PVKKSGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARERVGGRIV 179 (661)
Q Consensus 135 ~~~~~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~~~~GG~i~ 179 (661)
..-..+.+-|||+|+|||++|.+|.|. |.++.|+|.-+..||..-
T Consensus 18 E~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlD 66 (587)
T COG4716 18 ENVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLD 66 (587)
T ss_pred cccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCC
Confidence 334568899999999999999999986 569999999999999754
No 266
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.76 E-value=0.0016 Score=70.65 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=32.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC--cEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI--EVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~--~v~v~e~~~~~G 175 (661)
.++|+|||||+||++||..|++.|+ +|+|+++.+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 4689999999999999999999987 799999886553
No 267
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.72 E-value=0.0017 Score=71.71 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
.+||+|||||++|..||.. ..|.+|+++|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 4799999999999998754 47999999997 578987643
No 268
>KOG1298|consensus
Probab=96.71 E-value=0.0016 Score=67.17 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=33.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
....||+|||||.+|-+.|+.|++.|.+|+|+||.=
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 456789999999999999999999999999999873
No 269
>KOG2844|consensus
Probab=96.69 E-value=0.022 Score=63.00 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=29.8
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.+...+|+|||+|.+|-++|++|++.|.++.|++.+
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~ 71 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLER 71 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEee
Confidence 345679999999999999999999999985555433
No 270
>PRK07846 mycothione reductase; Reviewed
Probab=96.67 E-value=0.0017 Score=71.66 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=31.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
+||+|||||++|.+||.. ..|.+|+|+|+ +.+||-|.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~ 38 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCL 38 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCccc
Confidence 699999999999999876 46999999998 46788654
No 271
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.64 E-value=0.002 Score=70.95 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.4
Q ss_pred CcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVG 175 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~G 175 (661)
++|+|||||++|++||..|++. +++|+|+|+.+.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 4799999999999999999887 67999999998755
No 272
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.64 E-value=0.0021 Score=71.97 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=33.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
+||+|||||+||+.||..+++.|.+|+|+|+....+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 48999999999999999999999999999998555443
No 273
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.61 E-value=0.0018 Score=72.71 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=32.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC-CCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER-VGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~-~GG 176 (661)
...||+|||+|.|||+||..++ |.+|+|+|+... .||
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg 45 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGA 45 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCc
Confidence 3579999999999999999986 679999999987 344
No 274
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.55 E-value=0.0024 Score=76.61 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=33.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...||+|||||.|||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999874
No 275
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.54 E-value=0.039 Score=58.77 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC-----CCcEEEEcCCCCCCCce
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF-----GIEVVVLEARERVGGRI 178 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~-----g~~v~v~e~~~~~GG~i 178 (661)
....+|+|||||++|+.+|+.|+.. .+++.++|...+.--|+
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~ 62 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRL 62 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhh
Confidence 3568999999999999999999864 57899999877665553
No 276
>KOG2853|consensus
Probab=96.50 E-value=0.0026 Score=64.58 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=32.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~~~ 173 (661)
..++|+|||+|..|++.|+.|.++ |++|+|+|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 478999999999999999999874 799999999875
No 277
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0027 Score=64.27 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=34.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
...|.|||||+||--||+++++.|++|.++|.++.-+-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T 40 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT 40 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence 46799999999999999999999999999999977663
No 278
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.43 E-value=0.0031 Score=68.44 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=38.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.++|+|||+|+.||-+|..|++.|++|+++|+.+++||+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 57899999999999999999999999999999999999753
No 279
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.41 E-value=0.0034 Score=67.51 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=31.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+||+|||+|++|+++|..|+++|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
No 280
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.39 E-value=0.0026 Score=71.87 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=30.9
Q ss_pred cEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG-IEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~ 173 (661)
|+||||||.||+.+|.+|++.| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6999999999999999999998 79999999864
No 281
>KOG2852|consensus
Probab=96.38 E-value=0.0015 Score=64.95 Aligned_cols=41 Identities=27% Similarity=0.634 Sum_probs=37.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCC------CcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFG------IEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g------~~v~v~e~~~~~GG~ 177 (661)
.+.++|+|||||+.|..+||+|++.+ +.|+++|.+...||.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 45689999999999999999999988 799999999999984
No 282
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.35 E-value=0.003 Score=69.68 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=38.3
Q ss_pred cEEEEccChHHHHHHHHHHHCC---CcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChhhhh
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG---IEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLK 216 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g---~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 216 (661)
||+|||||+||..+|..|++.+ ++|+|+|+.+.+- +..|-..+ ..+..+.+.+|+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~------------~~vGe~~~-----p~~~~~~~~lgi~e~~ 62 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR------------IGVGESTL-----PSLRPFLRRLGIDEAD 62 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---------------SSEEE-------THHHHCHHHHT--HHH
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC------------CCccccch-----HHHHHHHHHcCCChHH
Confidence 6999999999999999999998 8999999875431 22333333 2345677888886553
No 283
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.33 E-value=0.0041 Score=68.14 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=33.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.++++|||||||.||+.||.+|.+.+++|+|+++++..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 45679999999999999999998888999999988753
No 284
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.09 E-value=0.041 Score=58.31 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=26.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG-IEVVVLEARERV 174 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~~ 174 (661)
.|+|+||.||++|+-|..|...+ .+++.||+++..
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 58999999999999999999877 899999998754
No 285
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.03 E-value=0.0065 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=33.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
....|+||||+|.+|-+.|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 457899999999999999999999999999999964
No 286
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.74 E-value=0.012 Score=63.41 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHh-ccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccC
Q psy6038 412 VPTALA-EGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLP 464 (661)
Q Consensus 412 L~~aLa-~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP 464 (661)
+.+.|. .+++++++++|++|..+++++.|.+.+ |+++.||.||+++.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~------g~~i~~D~vI~a~G 236 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDS------GRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcC------CcEEECCEEEECcC
Confidence 334443 367899999999999876666666644 78899999999965
No 287
>PLN02785 Protein HOTHEAD
Probab=95.69 E-value=0.013 Score=66.75 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=32.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...+|+||||||.||+.+|.+|++ +++|+|+|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346899999999999999999999 699999999754
No 288
>KOG1439|consensus
Probab=95.60 E-value=0.071 Score=55.78 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=39.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK 182 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~ 182 (661)
.++|+|+|-|+.=..-+..|+..|.+|+.+++++.-||-..|..
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 38999999999888888888999999999999999999876644
No 289
>KOG2665|consensus
Probab=95.53 E-value=0.0096 Score=60.01 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=36.7
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~GG 176 (661)
...++|.||||||+.||+.|++|.-. +.+|.|+|+...++=
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 35678999999999999999999877 899999999988874
No 290
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.50 E-value=0.01 Score=63.76 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=31.0
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
+|+|||+|+|||+||..|.+. ++|+|+-|.+.--
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~ 42 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE 42 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence 899999999999999999998 9999999876543
No 291
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.49 E-value=0.017 Score=53.96 Aligned_cols=32 Identities=41% Similarity=0.457 Sum_probs=30.6
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|+|||||..|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999876
No 292
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.48 E-value=0.014 Score=62.57 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=29.3
Q ss_pred cEEEEccChHHHHHHHHHHHC---CCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQF---GIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~---g~~v~v~e~~~~ 173 (661)
+|+|||||+||+.+|.+|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 599999999999999999744 689999998876
No 293
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.017 Score=64.45 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=33.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||+|.+|+++|..|.++|++|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 356899999999999999999999999999998764
No 294
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.019 Score=61.75 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=33.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCC---CcEEEEcCCCCCCCce
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG---IEVVVLEARERVGGRI 178 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g---~~v~v~e~~~~~GG~i 178 (661)
++|+|||+|++|+..|.+|.+.- ..+.|+|.+...|+=+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 68999999999999999998852 1399999999999654
No 295
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.018 Score=63.87 Aligned_cols=34 Identities=44% Similarity=0.542 Sum_probs=32.0
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
+|.|||+|.+|++||+.|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999988765
No 296
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.23 E-value=0.022 Score=61.81 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 56899999999999999999999999999999887654
No 297
>KOG4716|consensus
Probab=95.20 E-value=0.02 Score=58.29 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 135 ~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..+..+|.+|||||.+||+||.+.+..|.+|.+++-=
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 3466899999999999999999999999999999863
No 298
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.05 E-value=0.028 Score=60.14 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=33.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG--IEVVVLEARERV 174 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~~ 174 (661)
.+++|||||||.+||.+|..|.++- .+|+++|+++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 4678999999999999999999974 899999999763
No 299
>KOG1279|consensus
Probab=94.95 E-value=0.033 Score=60.84 Aligned_cols=109 Identities=22% Similarity=0.390 Sum_probs=83.2
Q ss_pred HcCCCCCCCChhHhhhccccccC--CccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHHHHH
Q psy6038 41 QSRLPYDKMTTNEVQYFPDISNN--PIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLE 118 (661)
Q Consensus 41 ~~~l~~~~~~~~e~~~~p~~~~~--~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (661)
++=+..+..+..|.+-+||...+ +..+-..|..-||.+..-...||..++|...|++.+. ++...+.+++.|+.
T Consensus 53 a~WFd~~~ih~iE~rs~pEFF~gks~sktPe~Y~~yRnfii~tyrlnp~~ylt~ta~rrnl~----gDv~ai~Rvh~FlE 128 (506)
T KOG1279|consen 53 AAWFDKSDIHDIERRSLPEFFNGKSKSKTPEVYMKYRNFIINTYRLNPQEYLTFTACRRNLA----GDVCAIARVHAFLE 128 (506)
T ss_pred HhhcChhhhhhHHhccchhhhcCCCCCCCHHHHHHHHHhhhhhhccCcccchhHHHHHhccc----chHHHHHHHHhhHH
Confidence 35677889999999999999865 2223488999999999999999999999999988877 45778899999999
Q ss_pred HhhHHhcCCcccc--CCCCCCCCCcEEEEccChHHHH
Q psy6038 119 RHGYINFGIFQRI--TPIPVKKSGKVIVIGAGISGLA 153 (661)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~v~iiG~G~aGl~ 153 (661)
.+|+|||-..... .+.........-+..+.+-|+.
T Consensus 129 ~WGLINy~~d~e~rp~~~~p~~t~h~~~~~~tp~~~~ 165 (506)
T KOG1279|consen 129 QWGLINYQVDAESRPHPIEPPETSHFQVLADTPRGLA 165 (506)
T ss_pred hhcccccccChhhCCcccCCCcccccccccCCCcccc
Confidence 9999998654322 2222333445566666665554
No 300
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.95 E-value=0.034 Score=61.25 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=35.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
.++|+|||+|++|+.+|..|++.|.+|+|+|+.+++.++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 468999999999999999999999999999999887654
No 301
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.017 Score=59.05 Aligned_cols=42 Identities=36% Similarity=0.560 Sum_probs=34.9
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCcee
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~ 179 (661)
.+..+||+|||+||||-+||.+-+|+|.+.=|+ .+|.||.+.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 356799999999999999999999999987664 356787643
No 302
>KOG0405|consensus
Probab=94.75 E-value=0.046 Score=56.02 Aligned_cols=45 Identities=33% Similarity=0.444 Sum_probs=40.8
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceec
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t 180 (661)
..+..|..|||||..|+++|++.+..|.+|.|.|..-++||.|-.
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 345789999999999999999999999999999999999997653
No 303
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.72 E-value=0.04 Score=59.40 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||+.|+-+|..|.+.|.+|+++|+.+++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence 46899999999999999999999999999999887754
No 304
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.47 E-value=0.043 Score=52.46 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=28.6
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+|+|||||..|..-|..+++.|++|++++.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998644
No 305
>KOG0404|consensus
Probab=94.44 E-value=0.035 Score=53.32 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=35.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC----CCCCCceec
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR----ERVGGRIVT 180 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~----~~~GG~i~t 180 (661)
..+|+|||+|||+-+||.+++++-.+.++||.- -.+||.+.|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 458999999999999999999999999999964 334666544
No 306
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.43 E-value=0.045 Score=60.89 Aligned_cols=38 Identities=34% Similarity=0.666 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||++|+-+|..|++.|.+|+++|+.+++..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 47999999999999999999999999999999987643
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.24 E-value=0.055 Score=59.82 Aligned_cols=35 Identities=43% Similarity=0.824 Sum_probs=32.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+.++|+|||+|.+|+++|..|++.|++|+++++..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46889999999999999999999999999999874
No 308
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.20 E-value=0.06 Score=59.70 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=34.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|.+|+.+|..|.+.|.+|+++|+.+++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 47899999999999999999999999999999987653
No 309
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.18 E-value=0.064 Score=50.63 Aligned_cols=36 Identities=42% Similarity=0.533 Sum_probs=30.3
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
-...+|+|+|+|.+|+.||..|...|.+|+++|.+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 345799999999999999999999999999999754
No 310
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.92 E-value=0.066 Score=59.44 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=34.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|.+|+-+|..|++.|.+|+|+|+.+++..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 47899999999999999999999999999999887754
No 311
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=2.3 Score=44.44 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK 182 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~ 182 (661)
..+||+|+|-|+.=-..+..|+..|.+|+.+++++.-|+-..|.+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence 478999999999988888889999999999999999999876654
No 312
>PRK06370 mercuric reductase; Validated
Probab=93.88 E-value=0.076 Score=58.93 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=35.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
.++|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 479999999999999999999999999999999887653
No 313
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.83 E-value=0.065 Score=51.45 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=27.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|.|||.|..||..|..|+++|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998865
No 314
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.79 E-value=0.078 Score=58.78 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=34.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|++|+-+|..|.+.|.+|+|+|+.+++..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 46899999999999999999999999999999887643
No 315
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.77 E-value=0.084 Score=58.63 Aligned_cols=37 Identities=32% Similarity=0.573 Sum_probs=34.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.++|+|||+|..|+-.|..|.+.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 5789999999999999999999999999999987764
No 316
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.76 E-value=0.083 Score=58.57 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=35.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..++|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 347899999999999999999999999999999988764
No 317
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.73 E-value=0.085 Score=57.83 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=36.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
-.++++|||||.-|+=-|..+++.|.+|+|+|+.+++--
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 457899999999999999999999999999999988764
No 318
>PRK07846 mycothione reductase; Reviewed
Probab=93.69 E-value=0.082 Score=58.44 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.++|+|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 4789999999999999999999999999999988765
No 319
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.69 E-value=0.062 Score=46.18 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++++|+|||+|..|..-+..|.+.|.+|+|+-...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 56899999999999999999999999999997764
No 320
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.67 E-value=0.082 Score=58.67 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|+.|+-+|..|++.|.+|+++|+.+++..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 47899999999999999999999999999999888743
No 321
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.63 E-value=0.078 Score=51.38 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...++|+|||+|.++.-+|..|.+.|.+|+++=|++
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 456999999999999999999999999999998765
No 322
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.63 E-value=0.086 Score=58.27 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=35.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 47899999999999999999999999999999988753
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.62 E-value=0.086 Score=58.63 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=35.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|+.|+-.|..|.+.|.+|+|+|+.+++..
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 47899999999999999999999999999999988754
No 324
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.60 E-value=0.089 Score=57.73 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=33.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.++|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 468999999999999999999999999999998876
No 325
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.57 E-value=0.094 Score=58.16 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=35.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 57899999999999999999999999999999987754
No 326
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.53 E-value=0.063 Score=58.52 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.2
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.+||+|||||.||.-||...++.|.+++++--+-.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 48999999999999999999999999999866533
No 327
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.45 E-value=0.1 Score=58.12 Aligned_cols=38 Identities=37% Similarity=0.503 Sum_probs=34.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 47999999999999999999999999999999987754
No 328
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.45 E-value=0.094 Score=58.28 Aligned_cols=38 Identities=24% Similarity=0.507 Sum_probs=34.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 46899999999999999999999999999998877653
No 329
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.44 E-value=0.09 Score=57.88 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=35.0
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||..|+-.|..|++.|.+|+++++.+++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 46899999999999999999999999999999988764
No 330
>KOG3855|consensus
Probab=93.28 E-value=0.17 Score=53.34 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=33.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHC----CCcEEEEcCC--CCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQF----GIEVVVLEAR--ERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~----g~~v~v~e~~--~~~GG~ 177 (661)
....+|+||||||.|++-|..|... -.+|.+||.. +..|+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~ 80 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF 80 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccc
Confidence 3478999999999999999999864 3599999998 555553
No 331
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.25 E-value=0.13 Score=50.23 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.+++|+|||||..|+..+..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45799999999999999999999999999997653
No 332
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.24 E-value=0.099 Score=51.87 Aligned_cols=65 Identities=28% Similarity=0.409 Sum_probs=46.3
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChh
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
++++|||+|-.|.+.|..|.+.|++|+++|+.+..= ..+. .-+.+.+.+.+...++ ..+++.|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~---~~~~----~~~~~~~~v~gd~t~~--~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERV---EEFL----ADELDTHVVIGDATDE--DVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHH---HHHh----hhhcceEEEEecCCCH--HHHHhcCCC
Confidence 479999999999999999999999999999875421 1110 1135666776554332 566777775
No 333
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.09 E-value=0.15 Score=46.12 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.6
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCc-EEEEcCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEAR 171 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~ 171 (661)
-..++|+|||||-+|-++++.|...|.+ |+|+-|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3578999999999999999999999997 9998875
No 334
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.01 E-value=0.12 Score=57.06 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 47899999999999999999999999999999887653
No 335
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.00 E-value=0.12 Score=57.03 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=32.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||+|..|+-+|..|.+.|.+|+|++++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 467999999999999999999999999999988753
No 336
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.94 E-value=0.11 Score=54.31 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=31.4
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4699999999999999999999999999998853
No 337
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.80 E-value=0.12 Score=61.07 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=34.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 46899999999999999999999999999999887754
No 338
>PRK12831 putative oxidoreductase; Provisional
Probab=92.77 E-value=0.14 Score=56.81 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=32.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...++|+|||+|..|+-+|..|.+.|.+|+|+++++
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 356899999999999999999999999999998765
No 339
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.67 E-value=0.15 Score=56.12 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||||++|+-+|..|.+.|.+|+++++.+++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 47899999999999999999999999999998876543
No 340
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.67 E-value=0.13 Score=57.89 Aligned_cols=36 Identities=39% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 457999999999999999999999999999986654
No 341
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.63 E-value=0.16 Score=56.40 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=35.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
.++|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 368999999999999999999999999999998887654
No 342
>PRK04148 hypothetical protein; Provisional
Probab=92.55 E-value=0.13 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=31.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+..+|++||.| .|...|..|++.|++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34689999999 999999999999999999998876
No 343
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.54 E-value=0.18 Score=47.46 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCCCcEEEEccCh-HHHHHHHHHHHCCCcEEEEcCC
Q psy6038 137 KKSGKVIVIGAGI-SGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 137 ~~~~~v~iiG~G~-aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
-.+++|+|||+|- +|..+|..|.+.|.+|+|..++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4578999999995 7999999999999999999875
No 344
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.50 E-value=0.17 Score=46.56 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=29.2
Q ss_pred EEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
|+|||+|..|...|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998765
No 345
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.14 Score=53.05 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=31.2
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|+|||+|.-|...|..|+++|++|+++++++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4699999999999999999999999999988744
No 346
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.44 E-value=0.15 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=30.8
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|+|||+|.-|.+.|..|+++|++|++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999998764
No 347
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.35 E-value=0.12 Score=52.33 Aligned_cols=63 Identities=29% Similarity=0.497 Sum_probs=49.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC--------CCCCCceeccCCCc---------cccccccEEEeCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR--------ERVGGRIVTFKKSN---------YVADLGAMVVTGLG 199 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~--------~~~GG~i~t~~~~~---------~~~d~G~~~i~~~~ 199 (661)
-.+.+|+|||+|.+|.-||.-....|-+|+|+|.+ +..|||+.+....- .-+=.|+-.+.+..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 44678999999999999999999999999999998 66799987765431 11226777776653
No 348
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.25 E-value=0.15 Score=57.33 Aligned_cols=36 Identities=39% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||||.+|+-+|..|+..|.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 467999999999999999999999999999986654
No 349
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.23 E-value=0.16 Score=60.42 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=34.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 46899999999999999999999999999999987654
No 350
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.17 E-value=0.17 Score=52.98 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
-++|+|||+|.-|..-|..++..|++|++++..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36799999999999999999999999999998753
No 351
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.14 E-value=0.23 Score=48.41 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=31.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.+++|+|||||-.|...|..|.+.|.+|+|+...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5689999999999999999999999999999754
No 352
>PTZ00058 glutathione reductase; Provisional
Probab=92.10 E-value=0.17 Score=57.25 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 57899999999999999999999999999999987653
No 353
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.09 E-value=0.22 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e 169 (661)
-.+++|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 357899999999999999999999999999994
No 354
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.08 E-value=0.18 Score=56.02 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.++|+|+|.|.+|.+||+.|.+.|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 56899999999999999999999999999997643
No 355
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.05 E-value=0.19 Score=55.57 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=33.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 4689999999999999999999999999999877653
No 356
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.05 E-value=0.19 Score=53.81 Aligned_cols=35 Identities=31% Similarity=0.596 Sum_probs=31.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999864
No 357
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.97 E-value=0.2 Score=55.58 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=31.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4689999999999999999999999999999875
No 358
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.97 E-value=0.17 Score=52.26 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=32.0
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.+|+|||+|.-|..-|..|++.|++|+++|..+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 47999999999999999999999999999987654
No 359
>PRK10262 thioredoxin reductase; Provisional
Probab=91.92 E-value=0.2 Score=52.57 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 467999999999999999999999999999998754
No 360
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.91 E-value=0.18 Score=52.29 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=30.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|+|||+|.-|...|..|+++|++|++++++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 361
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.87 E-value=0.19 Score=56.05 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..++|+|+|.|.+|++|+..|.+.|++|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999965
No 362
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.84 E-value=0.52 Score=52.02 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=32.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.++|+|+|.|.+|+++|+.|+++|++|+++|..+..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 568999999999999999999999999999976653
No 363
>PRK06116 glutathione reductase; Validated
Probab=91.80 E-value=0.21 Score=55.17 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.++|+|||+|..|+-.|..|.+.|.+|+++++.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999999999999999999988765
No 364
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.76 E-value=0.19 Score=55.69 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=33.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
....+|+|||+|++||.|+..+...|.+|+++|.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999999999999999999999999987653
No 365
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.72 E-value=0.19 Score=57.06 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=34.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
..++|+|||||..|+-.|..|++.|.+|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 4679999999999999999999999999999998865
No 366
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.67 E-value=0.21 Score=57.52 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 468999999999999999999999999999999987653
No 367
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.63 E-value=0.26 Score=54.28 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=34.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
.++|+|||+|..|+-.|..|.+.|.+|+|+|+.+++..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 46899999999999999999999999999999877654
No 368
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.61 E-value=0.2 Score=54.37 Aligned_cols=36 Identities=47% Similarity=0.660 Sum_probs=34.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.++|+|+|-|.+|++||+.|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 789999999999999999999999999999988776
No 369
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.60 E-value=0.22 Score=53.16 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=30.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCc-EEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~~ 172 (661)
.++|+|||+|..|+-+|..|.+.|.+ |+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 57899999999999999999999997 99998754
No 370
>KOG0042|consensus
Probab=91.59 E-value=0.089 Score=57.05 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=37.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
....||+|||||.+|-.||.-.+-+|.+|.++|+.+..-|.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 45689999999999999999999999999999999998884
No 371
>PLN02507 glutathione reductase
Probab=91.56 E-value=0.22 Score=55.80 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=33.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.++|+|||+|..|+-.|..|++.|.+|+|+++.+++-
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 4689999999999999999999999999999988654
No 372
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.39 E-value=0.22 Score=51.63 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=31.4
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|.|||+|.-|...|..|++.|++|+++++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 373
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.16 Score=52.19 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=33.0
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
.-+.++|+|||+|-+|+-||..|+-.--.|+++|=.+.+
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL 389 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL 389 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh
Confidence 346899999999999999999998766689999965543
No 374
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.23 E-value=0.26 Score=50.86 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 45799999999999999999999999999999864
No 375
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.19 E-value=0.33 Score=47.23 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=32.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..++|+|+|.|-.|..+|+.|.+.|++|++.+.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 56789999999999999999999999999998764
No 376
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.18 E-value=0.26 Score=54.36 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=31.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.++|+|+|+|.+|+++|+.|++.|++|++.+++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5689999999999999999999999999998764
No 377
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.15 E-value=0.27 Score=53.09 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..+++|+|+|+|+-|+.+|..|...|.+|+|+|..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 357899999999999999999999999999998864
No 378
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.92 E-value=0.31 Score=50.99 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...+|+|||+|.-|.+-|..|++.|++|+++-+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998753
No 379
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.91 E-value=0.3 Score=54.00 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=29.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..++|+|+|.|.+|.+||+.|.+ |.+|+|.|.+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 45789999999999999999995 9999999965
No 380
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.89 E-value=0.33 Score=54.00 Aligned_cols=35 Identities=40% Similarity=0.681 Sum_probs=31.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
-..++|.|+|.|-+|+++|+.|.++|++|++.++.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 34568999999999999999999999999999965
No 381
>PLN02546 glutathione reductase
Probab=90.77 E-value=0.3 Score=55.28 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG 176 (661)
..++|+|||+|..|+-.|..|.+.|.+|+|+|+.+++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 357999999999999999999999999999999887654
No 382
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.74 E-value=0.29 Score=50.88 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=29.4
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
+|+|||+|..|.+.|..|++.|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999984
No 383
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.68 E-value=0.34 Score=50.25 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=33.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||+|.+|+.+|..|.+.|.+|++++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 467999999999999999999999999999998853
No 384
>PRK13748 putative mercuric reductase; Provisional
Probab=90.62 E-value=0.34 Score=55.21 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=31.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.++|+|||+|..|+-.|..|.+.|.+|+|+++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4789999999999999999999999999999754
No 385
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.51 E-value=0.32 Score=54.21 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=32.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHC---CCcEEEEcCCCCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQF---GIEVVVLEARERVGG 176 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~---g~~v~v~e~~~~~GG 176 (661)
.++|+|||||..|+-.|..+... |.+|+|+|+.+++..
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 47899999999999999776654 999999999988754
No 386
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=90.38 E-value=0.25 Score=42.95 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHhcc--ccCCC---CcchhhHHHHHHHHHHhhHHhcCC
Q psy6038 73 HIRNRILQMWLENPKVQLTLEFVMQK--IESPF---NSEVQLVSRLHCYLERHGYINFGI 127 (661)
Q Consensus 73 ~irn~~~~~~~~np~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 127 (661)
++..++..++..||++.++.+.|..- +...+ ..+||.|+.|++|+.++++.+ ||
T Consensus 53 ~~~~A~~~i~~~np~p~vcGrvCp~p~~Ce~~C~r~~~~pV~I~~l~r~~~d~~~~~-~~ 111 (111)
T PF14691_consen 53 NFKEAYELIREDNPFPAVCGRVCPHPKQCESACRRGKGEPVAIRALERFIADYALEE-GW 111 (111)
T ss_dssp -HHHHHHHHHHH-TTHHHHHHH--GGGSGGGG-GGGST-S--HHHHHHHHHHHHHHH-T-
T ss_pred CHHHHHHHHHHhCCCcccccCCCCCcchHHHHccCCCCCCCcHHHHHHHHHHHHHHc-CC
Confidence 56777778889999999999887643 33221 248999999999999999887 54
No 387
>PRK14694 putative mercuric reductase; Provisional
Probab=90.37 E-value=0.37 Score=53.56 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=30.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|+|||+|+.|+-.|..|++.|.+|+|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999864
No 388
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.30 E-value=0.31 Score=50.16 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=30.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|+|||+|.-|.+.|..|++.|++|++++.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999986643
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.28 E-value=0.36 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..+|+|||+|.-|...|.+|++.|++|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999999999999999885
No 390
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.15 E-value=0.35 Score=50.34 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=28.8
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~ 170 (661)
+|+|||+|.-|.+.|..|++.|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 391
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.12 E-value=0.36 Score=57.07 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=32.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCc-EEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~~~ 173 (661)
...++|+|||||..|+-+|..|.+.|.+ |+|++++++
T Consensus 568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 568 KFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3568999999999999999999999997 999987653
No 392
>PRK14727 putative mercuric reductase; Provisional
Probab=90.11 E-value=0.41 Score=53.42 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|+|||+|..|+-.|..|.+.|.+|+|+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 478999999999999999999999999999875
No 393
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.99 E-value=0.39 Score=53.25 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCcEEEEccChHHHH-HHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLA-AARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~-aa~~l~~~g~~v~v~e~~~~ 173 (661)
+.++|.|||.|-+|++ +|+.|.++|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4568999999999999 69999999999999998654
No 394
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.88 E-value=0.39 Score=53.17 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=31.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
..++|+|||+|..|+-+|..|.+.|. +|+++++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46799999999999999999999998 899998754
No 395
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.80 E-value=0.44 Score=49.61 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=30.4
Q ss_pred CcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
++|+|||+|..|.+.|+.|+.+|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999887 8999998544
No 396
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.78 E-value=0.36 Score=50.87 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=30.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||+|-.||+.|.-|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999998753
No 397
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.66 E-value=0.42 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=30.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.+|.|||+|.-|.+.|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999753
No 398
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.61 E-value=0.5 Score=49.33 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.+++|.|||+|.-|.+.|..|.++|++|+++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999875
No 399
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.58 E-value=0.36 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.3
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|.|||.|..|+..|..|+++|++|++++.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999999999999999999999999987644
No 400
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.57 E-value=0.43 Score=49.21 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=33.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..++|+|||+|..|.+.|..|...|.+|++++++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999999999999999999999999998753
No 401
>KOG3923|consensus
Probab=89.49 E-value=0.33 Score=48.98 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=26.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCC-------CcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFG-------IEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g-------~~v~v~e~~ 171 (661)
..+|+|||||..||+.|..+.+.+ .+|+|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999998888855 367777544
No 402
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.47 E-value=0.41 Score=49.68 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=30.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||+|.-|..-|..|++.|++|++++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.45 E-value=0.41 Score=50.02 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=30.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||+|.-|.+.|..|++.|++|++++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999998754
No 404
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.39 E-value=0.52 Score=48.58 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=31.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
..++|+|||+|-+|-++|+.|.+.|. +|+|+.|..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 35789999999999999999999998 799998863
No 405
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.27 E-value=0.45 Score=52.73 Aligned_cols=36 Identities=39% Similarity=0.617 Sum_probs=32.7
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...+|+|+|+|..|+.|+..+...|.+|++++.+..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999988754
No 406
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.25 E-value=0.51 Score=46.85 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=31.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCc---EEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIE---VVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~---v~v~e~~~ 172 (661)
..++|+|+|||-+|..+|..|.+.|.+ +.|++++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 457899999999999999999999985 99999873
No 407
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.20 E-value=0.51 Score=52.89 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=30.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 358999999999999999999999999999874
No 408
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.19 E-value=0.5 Score=50.94 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...++|+|||.|..|+.+|..|...|.+|+|+|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 357899999999999999999999999999998765
No 409
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.17 E-value=0.74 Score=37.96 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=29.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEA 170 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~ 170 (661)
..++++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999998 678999987
No 410
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=89.14 E-value=0.5 Score=52.71 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=30.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 357999999999999999999999999999863
No 411
>KOG1238|consensus
Probab=89.07 E-value=0.43 Score=53.39 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=34.4
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHC-CCcEEEEcCCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQF-GIEVVVLEARERV 174 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~-g~~v~v~e~~~~~ 174 (661)
....+|.||||||-||-..|.+|.+. ..+|+++|+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999986 5799999997666
No 412
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.06 E-value=0.48 Score=53.13 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=31.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.++|.|||.|.+|+++|+.|.++|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999764
No 413
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=0.55 Score=49.50 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..+|.|||+|.-|.+.|..|++.|++|+++.++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998643
No 414
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.98 E-value=0.38 Score=52.49 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=30.9
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+|.|||.|..|+..|..|++.|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998754
No 415
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.93 E-value=0.62 Score=45.27 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
...+|+|||+|--|...|..|++.|+ ++++++..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999 69998876
No 416
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.93 E-value=0.54 Score=44.05 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=28.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||-|..|..-|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 579999999999999999999999999999764
No 417
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.93 E-value=0.52 Score=49.23 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=31.0
Q ss_pred cEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCC-CCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARER-VGG 176 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~-~GG 176 (661)
+|+|||+|..|.++|+.|+.+| .+|.+++++.. ..|
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g 40 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG 40 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence 6999999999999999999999 48999998643 444
No 418
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.84 E-value=0.58 Score=43.45 Aligned_cols=35 Identities=34% Similarity=0.494 Sum_probs=28.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..+.|+|+|=|..|-.+|+.|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 46889999999999999999999999999999876
No 419
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.80 E-value=0.99 Score=52.84 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 109 LVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
....++.|+.+......+ .........-++|+|||||.-|-.-|..+++.|++|+++|.++.
T Consensus 286 ~~egi~aF~~~~~~~~~~---~~~~~~~~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 286 ARALVGIFLNDQYVKGKA---KKLAKDAKPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred HHHHHHHHHHHHHhcCCC---CCCCCCccccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 344566676665543211 11001122346899999999999999999999999999998754
No 420
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.50 E-value=0.51 Score=56.82 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...++|+|||||..|+-||..+.+.|.+|+++.++++
T Consensus 445 ~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 445 VKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 3578999999999999999999999999999988753
No 421
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.11 E-value=0.53 Score=52.59 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.2
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|.|||+|.-|..-|..|++.|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998743
No 422
>KOG2755|consensus
Probab=87.92 E-value=0.32 Score=48.16 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=28.6
Q ss_pred cEEEEccChHHHHHHHHHHHC--CCcEEEEcCCCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVG 175 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~--g~~v~v~e~~~~~G 175 (661)
+.+|||||+||.+||-+|+.. ..+|+++-+.+.+-
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 368999999999999999985 34788887776654
No 423
>KOG2495|consensus
Probab=87.88 E-value=0.51 Score=50.07 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHhhhccccccCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHHHHHHhhHHhcCCcccc
Q psy6038 52 NEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRI 131 (661)
Q Consensus 52 ~e~~~~p~~~~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (661)
.|..+|-.++.+ -..||+.++.....--.+.++.++-++.+.
T Consensus 179 ~e~~~FLKEv~d-------AqeIR~~~~~~le~a~~~~l~~eerkRlLh------------------------------- 220 (491)
T KOG2495|consen 179 EENAHFLKEVED-------AQEIRRKVIDNLEKAELPGLSDEERKRLLH------------------------------- 220 (491)
T ss_pred hhchhhhhhhhH-------HHHHHHHHHHHHHHhhcCCCChHHhhheEE-------------------------------
Q ss_pred CCCCCCCCCcEEEEccChHHHHHHHHHHH--------------CCCcEEEEcCCCCC
Q psy6038 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQ--------------FGIEVVVLEARERV 174 (661)
Q Consensus 132 ~~~~~~~~~~v~iiG~G~aGl~aa~~l~~--------------~g~~v~v~e~~~~~ 174 (661)
++||||||.|.-.|.+|+. .-.+|+++|+.+.+
T Consensus 221 ----------~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 221 ----------FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred ----------EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
No 424
>KOG2311|consensus
Probab=87.81 E-value=0.51 Score=50.62 Aligned_cols=41 Identities=27% Similarity=0.480 Sum_probs=34.1
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC-CCCCCc
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR-ERVGGR 177 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~-~~~GG~ 177 (661)
...++|||||||.||--||...++.|-+.+++-.+ +.+|-+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~m 67 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM 67 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccc
Confidence 45689999999999999999999999988888655 555544
No 425
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.62 E-value=0.76 Score=49.87 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..++|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 57899999999999999999999999999999765
No 426
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.52 E-value=0.73 Score=50.51 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=30.1
Q ss_pred CcEEEEccChHHHHHHHHHHH--------------CCCcEEEEcCCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQ--------------FGIEVVVLEARERV 174 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~--------------~g~~v~v~e~~~~~ 174 (661)
++|+|||+|++|+-.|..|+. .|.+|+++|+.+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 589999999999999998875 37889999987765
No 427
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.45 E-value=0.61 Score=52.19 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=31.9
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
-++|.|||+|.-|..-|..|++.|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36799999999999999999999999999997754
No 428
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.39 E-value=0.91 Score=43.79 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.5
Q ss_pred CCCcEEEEcc-ChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 138 KSGKVIVIGA-GISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~-G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..++|+|+|| |..|..+|..|.+.|++|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578999997 999999999999999999999765
No 429
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=87.29 E-value=0.82 Score=46.76 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..++|+|+|+|-+|.++|+.|++.|++|+|+.++.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999998753
No 430
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.24 E-value=0.74 Score=48.49 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=29.9
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|.|||||.-|.+-|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999998853
No 431
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.19 E-value=0.88 Score=47.73 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
..+|+|||||..|-+.|+.|+..|+ +++++|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 9999998665
No 432
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.16 E-value=0.72 Score=51.13 Aligned_cols=33 Identities=39% Similarity=0.501 Sum_probs=30.7
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
.++|.|||.|-+|+++|..|.++|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999999999999999999965
No 433
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.08 E-value=0.78 Score=48.93 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=30.6
Q ss_pred CcEEEEccChHHHHHHHHHHHCC-CcEEEEcCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG-IEVVVLEAR 171 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~ 171 (661)
++|+|||||-.|.++|+.|++.| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 68999999999999999999999 899999988
No 434
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.02 E-value=0.78 Score=48.14 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=30.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||+|.-|...|..|++.|++|+++++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 369999999999999999999999999998864
No 435
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.94 E-value=0.69 Score=51.75 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=30.5
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||+|.-|..-|..|+++|++|+|+++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999998763
No 436
>PLN02494 adenosylhomocysteinase
Probab=86.93 E-value=0.9 Score=49.63 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
-.+++|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 347899999999999999999999999999999875
No 437
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.87 E-value=0.84 Score=47.62 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.9
Q ss_pred cEEEEccChHHHHHHHHHHHCC--CcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~~ 173 (661)
+|+|||+|..|.+.|+.|+..| .+++++++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 7999999999999999999999 58999998644
No 438
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.86 E-value=0.99 Score=39.30 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=42.3
Q ss_pred EEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChh
Q psy6038 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
|+|+|.|..|...+..|.+.+.+|+++|..+.. +.. ..+.|..++.|-..++ ..+++.+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~---~~~------~~~~~~~~i~gd~~~~--~~l~~a~i~ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER---VEE------LREEGVEVIYGDATDP--EVLERAGIE 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH---HHH------HHHTTSEEEES-TTSH--HHHHHTTGG
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH---HHH------HHhcccccccccchhh--hHHhhcCcc
Confidence 799999999999999999988899999998653 222 1234566776654333 455666664
No 439
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.68 E-value=1.6 Score=51.03 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
..-++|+|||||.-|-.-|..++..|++|+++|.+..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3457899999999999999999999999999998754
No 440
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.63 E-value=0.67 Score=41.86 Aligned_cols=33 Identities=24% Similarity=0.586 Sum_probs=29.1
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
..+|+|||+|--|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999999 68888854
No 441
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.62 E-value=0.99 Score=46.66 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCc-EEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~-v~v~e~~~ 172 (661)
+.++|+|+|||=+|.++|+.|++.|.+ |+|+.|+.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 457899999999999999999999996 99998764
No 442
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=86.47 E-value=0.74 Score=41.70 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=27.8
Q ss_pred EEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 142 v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|+|||+.|.+.|..+...|++|+|++-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998844
No 443
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.42 E-value=1.7 Score=51.10 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.-++|.|||||.-|-.-|..++..|++|+++|..+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 446899999999999999999999999999998754
No 444
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=86.25 E-value=0.43 Score=50.59 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=70.1
Q ss_pred HHcCCCCCCCChhHhhhccccc--cCCccchhHHHHHHHHHHHHHhcCCCCCCCHHHHhccccCCCCcchhhHHHHHHHH
Q psy6038 40 FQSRLPYDKMTTNEVQYFPDIS--NNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYL 117 (661)
Q Consensus 40 ~~~~l~~~~~~~~e~~~~p~~~--~~~~~~~~~~l~irn~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (661)
++.-+.....++.|.+=-||-- ++|..+-++|-.-||.+.-..+.||..++|+..|++.+- ++...|-++|+||
T Consensus 57 ~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLtvTa~RRNva----gDV~aivrvHrFL 132 (531)
T COG5259 57 YAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACRRNVA----GDVAAIVRVHRFL 132 (531)
T ss_pred hhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEEeeeehhccc----hhHHHHHHHHHHH
Confidence 4456667788888887777765 334456778999999999999999999999987776654 5778888999999
Q ss_pred HHhhHHhcCCccc
Q psy6038 118 ERHGYINFGIFQR 130 (661)
Q Consensus 118 ~~~~~~~~~~~~~ 130 (661)
..+|+|||++-+.
T Consensus 133 ekWGLINYqvdp~ 145 (531)
T COG5259 133 EKWGLINYQVDPG 145 (531)
T ss_pred HHhcceeeccCCC
Confidence 9999999987543
No 445
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.16 E-value=0.96 Score=52.48 Aligned_cols=37 Identities=38% Similarity=0.573 Sum_probs=32.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
...++|+|||+|..|+-+|..|.+.|. +|+|++++++
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 346899999999999999999999997 6999988764
No 446
>KOG4405|consensus
Probab=85.98 E-value=0.86 Score=47.97 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=41.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS 184 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~ 184 (661)
+...||||||-|..--..|....+.|.+|+=++.++..||...++..+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 357899999999977766667799999999999999999999887755
No 447
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=85.84 E-value=1.3 Score=47.64 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=35.7
Q ss_pred ccCceeeCceEEEEEecCCceEEEEeCCCCCCCCeEEEeCEEEEccChhh
Q psy6038 418 EGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGI 467 (661)
Q Consensus 418 ~~L~I~lnt~V~~I~~~~~gv~V~~~~~~~~~~g~~i~AD~VV~TvP~~v 467 (661)
++.+|+.+++|++|+.+++++.|.+.+ |..++||+||+|.-...
T Consensus 147 ~G~~i~~~~~V~~i~~~~~~~~v~t~~------g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 147 IRLTLHFNTEITSLERDGEGWQLLDAN------GEVIAASVVVLANGAQA 190 (381)
T ss_pred CCcEEEeCCEEEEEEEcCCeEEEEeCC------CCEEEcCEEEEcCCccc
Confidence 356899999999999887777777654 66799999999987653
No 448
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.82 E-value=0.96 Score=46.49 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=29.9
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|.|||.|.-|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 449
>KOG3851|consensus
Probab=85.81 E-value=0.74 Score=46.97 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHC-CC-cEEEEcCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQF-GI-EVVVLEARER 173 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~-g~-~v~v~e~~~~ 173 (661)
.++..+|+|||||.+|++.|.++.++ |- +|.|+|-.++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 35678999999999999999998875 54 7899987654
No 450
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.79 E-value=1.2 Score=43.95 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEE
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVL 168 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~ 168 (661)
.++++|+|||||..++.=+..|.+.|.+|+|+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVV 54 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYIL 54 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 45789999999999999999999999999999
No 451
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.73 E-value=2.1 Score=45.93 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCCcEEEEc-cChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 138 KSGKVIVIG-AGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG-~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
..++|+||| .|.-|-+.|..|.+.|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 457899999 89999999999999999999999864
No 452
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.69 E-value=1.2 Score=44.85 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.6
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...+++|+|||+-+...|..+...||+|+|++-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 356899999999999999999999999999997755
No 453
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=85.68 E-value=1.4 Score=40.86 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+.++|+|||-|--|.+-|..|+..|++|+|-.+...
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence 468999999999999999999999999999887644
No 454
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.45 E-value=1 Score=49.21 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=30.7
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
++|.|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999764
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.40 E-value=0.95 Score=46.82 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=29.9
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|.|||.|.-|...|..|.+.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999874
No 456
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.38 E-value=0.95 Score=49.97 Aligned_cols=34 Identities=38% Similarity=0.703 Sum_probs=31.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
...|+|||.|-+|+++|+.|.++|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4579999999999999999999999999999765
No 457
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.37 E-value=1.2 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=30.9
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
...+|+|||+|-.|-.+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999998 88888875
No 458
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.33 E-value=1.4 Score=40.53 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-IEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~~ 173 (661)
+.++|+|||+|..|.+.|..|.+.| .+|+++.++..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 3578999999999999999999996 78999987643
No 459
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.26 E-value=0.83 Score=50.55 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+.++|+|||+|.+|+=.|..|.+.+.+|+++.++..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 578999999999999999999999999999988653
No 460
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.19 E-value=0.91 Score=48.98 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.2
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+|.|||.|..|+..|..|+. |++|+++|....
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998643
No 461
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.99 E-value=1.5 Score=40.08 Aligned_cols=33 Identities=39% Similarity=0.568 Sum_probs=29.6
Q ss_pred CcEEEEcc-ChHHHHHHHHHHHCCC--cEEEEcCCC
Q psy6038 140 GKVIVIGA-GISGLAAARHMEQFGI--EVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~-G~aGl~aa~~l~~~g~--~v~v~e~~~ 172 (661)
.+|+|||| |..|-+.|+.|...|+ ++.+++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999886 799999874
No 462
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.98 E-value=1.2 Score=49.09 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=31.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
.++|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4679999999999999999999999999999765
No 463
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.97 E-value=1.3 Score=45.56 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-IEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~ 172 (661)
..++|+|+|+|-+|.++++.|...| .+|+|+.|+.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4578999999999999999999999 6899998764
No 464
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.97 E-value=1.2 Score=49.51 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.0
Q ss_pred CcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhcC
Q psy6038 614 PRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGA 652 (661)
Q Consensus 614 ~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g~ 652 (661)
++||.+|+.+.. +.++..|+..|.+||..|...+.|.
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999863 4578899999999999999999874
No 465
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=84.94 E-value=1.5 Score=45.86 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCC--cEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGI--EVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~--~v~v~e~~~ 172 (661)
+...+|+|||+|-.|-++|+.|...|. ++.+++.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 345799999999999999999999998 799999753
No 466
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.90 E-value=1.2 Score=46.36 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.4
Q ss_pred CcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
++|+|||+|..|.+.|+.|+..|+ +|+++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 9999998543
No 467
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=84.82 E-value=0.69 Score=41.30 Aligned_cols=38 Identities=37% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
...+.+|.|||+|-.|-+-|..|.++|+.|.-+..++.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 34578999999999999999999999999988876653
No 468
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.81 E-value=1.3 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=31.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
...+|+|||+|-.|-.+|..|++.|. +++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45789999999999999999999995 899998653
No 469
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.64 E-value=1.2 Score=43.83 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.0
Q ss_pred cEEEEc-cChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIG-AGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG-~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|.||| +|.-|.+.|..|.+.|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999997654
No 470
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=84.60 E-value=1.2 Score=50.05 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
..++|+|+|+|-+|.++|+.|++.|.+|+|+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999764
No 471
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=84.57 E-value=0.73 Score=49.55 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-------------CcEEEEcCCCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-------------IEVVVLEARERVG 175 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-------------~~v~v~e~~~~~G 175 (661)
...+|+|||||++|.-.|..|+..- .+|+++|+.+++-
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 3468999999999999998887642 2788888877765
No 472
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=84.42 E-value=1.3 Score=49.50 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=32.0
Q ss_pred CcEEEecccccCcCCcchhHHHHHHHHHHHHHHHHhhcCC
Q psy6038 614 PRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGAN 653 (661)
Q Consensus 614 ~rl~FAGe~t~~~~~gtv~GA~~SG~raA~~i~~~~~g~~ 653 (661)
++||.||+.+. .+.++.-|+..|.+||..|...|.|.+
T Consensus 445 ~gVfAaGD~~~--g~~~~~~Av~~G~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 445 PGVFAAGDCRR--GQSLIVWAINEGRKAAAAVDRYLMGSS 482 (485)
T ss_pred CCEEEeeccCC--CcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67999999875 345778899999999999999998743
No 473
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.41 E-value=1.5 Score=45.82 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=30.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC--cEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI--EVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~--~v~v~e~~~ 172 (661)
..+|+|||+|..|-++|+.|...|. ++.++|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999887 699998764
No 474
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=84.36 E-value=1.4 Score=48.28 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
-.+++|+|||.|..|..+|..|...|.+|+++|..+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4578999999999999999999999999999987643
No 475
>KOG2304|consensus
Probab=84.34 E-value=1 Score=43.58 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=33.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~ 174 (661)
...+.|.|||||.-|-..|.-.+..|++|.+++++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 34578999999999999999999999999999987653
No 476
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=84.34 E-value=1.1 Score=49.38 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=33.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
-..|+|+|||+|.+|...|-.|++.|.+|+++=|++.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 4679999999999999999999999999999987654
No 477
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.26 E-value=1.1 Score=46.29 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=30.6
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
-++|.|||||.-|-.-|..++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 368999999999999999999988999999988
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.25 E-value=2.4 Score=49.71 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhHHhcCCccccCCCCCCCCCcEEEEccChHHHHHHHHHH-HCCCcEEEEcCCC
Q psy6038 111 SRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHME-QFGIEVVVLEARE 172 (661)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~aGl~aa~~l~-~~g~~v~v~e~~~ 172 (661)
..++.|+.++....... .. .+...-++|+|||||..|-.-|..++ ..|++|+++|.+.
T Consensus 285 ~~~~aF~~~~~~~~~~~---~~-~~~~~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 285 ALRSIFFATTEMKKDTG---SD-AKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred HHHHHHHHHHHhcCCCC---CC-CCCCcccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 35666665554432101 01 11234578999999999999999998 8899999999864
No 479
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.07 E-value=1.5 Score=46.04 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-IEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~ 172 (661)
++.+|+|||||..|-+.|+.|+..| .+++++|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4679999999999999999999999 5899999764
No 480
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=84.00 E-value=1.4 Score=46.84 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=31.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCC---cEEEEcCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGI---EVVVLEAR 171 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~---~v~v~e~~ 171 (661)
-+..+|+|.|||.||+++|.+|...|. ++.++++.
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 356789999999999999999999998 69888887
No 481
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.71 E-value=1.5 Score=45.08 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
..++|+|||||=+|-++++.|.+.|. +|+|+.|..
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 35789999999999999999999997 699997753
No 482
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.65 E-value=1.8 Score=42.18 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
.+.+|+|||+|-.|-.+|..|++.|. ++++++..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46789999999999999999999998 78888764
No 483
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=83.55 E-value=1.4 Score=48.96 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.1
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
..++|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 46899999999999999999999996 7999988754
No 484
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.53 E-value=2.4 Score=48.26 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=47.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCceeccCCCccccccccEEEeCCCCChhhHHHHhhChh
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~i~t~~~~~~~~d~G~~~i~~~~~~~~~~l~~~lgl~ 213 (661)
+.+|+|+|.|.-|-..|.+|.+.|++|+++|+++. ++...+ +.|.+.+.|...++ ...++.+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~---~~~~~~------~~g~~~i~GD~~~~--~~L~~a~i~ 480 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT---RVDELR------ERGIRAVLGNAANE--EIMQLAHLD 480 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH---HHHHHH------HCCCeEEEcCCCCH--HHHHhcCcc
Confidence 57899999999999999999999999999999865 333222 35677777654332 455666664
No 485
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=83.39 E-value=1.3 Score=48.60 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=30.0
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
+|.|||.|-+|+++|+.|.++|++|++.|.+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 489999999999999999999999999997643
No 486
>KOG1335|consensus
Probab=83.36 E-value=0.6 Score=48.81 Aligned_cols=40 Identities=38% Similarity=0.567 Sum_probs=37.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCCCc
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~GG~ 177 (661)
-.++.+|||||.-||--+.--.+.|-+|+++|..+.+||.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 4578999999999999999999999999999999999985
No 487
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.27 E-value=1.7 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.3
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC--cEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI--EVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~--~v~v~e~~~ 172 (661)
..+|+|||+|..|.+.|..|.+.|+ +|++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 4679999999999999999999995 899998864
No 488
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.23 E-value=1.4 Score=48.86 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=29.1
Q ss_pred CcEEEEccChHHHHHHHHHHHCC--CcEEEEcCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFG--IEVVVLEARE 172 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g--~~v~v~e~~~ 172 (661)
++|+|||+|..||..|..|+++| ++|+.+|...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 46999999999999999999985 7899998653
No 489
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=83.13 E-value=1.8 Score=44.59 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
.++|+|+|||=+|-++++.|.+.|. +++|+.|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 5789999999999999999999997 688997753
No 490
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.12 E-value=1.5 Score=47.95 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=31.8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~ 172 (661)
...++|+|||+|..|..+|..|...|. +|+|+.+..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 356899999999999999999999998 799998863
No 491
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=82.98 E-value=2 Score=40.84 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCCCC
Q psy6038 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175 (661)
Q Consensus 136 ~~~~~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~~G 175 (661)
.-.+++|.|||.|-.|...|..|...|.+|+.+++.....
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh
Confidence 3467899999999999999999999999999999887643
No 492
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=82.85 E-value=1.6 Score=47.63 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCC
Q psy6038 137 KKSGKVIVIGAGISGLAAARHMEQFG-IEVVVLEARE 172 (661)
Q Consensus 137 ~~~~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~ 172 (661)
...++|+|||+|..|..+|..|...| .+|+|+.+..
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 34678999999999999999999999 6899998763
No 493
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.71 E-value=1.4 Score=47.72 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=28.0
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~ 171 (661)
+|.|||.|-+|+++|+.|. +|++|++.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 5899999999999999999 99999999954
No 494
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=82.64 E-value=1.7 Score=44.39 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCCCC
Q psy6038 139 SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARER 173 (661)
Q Consensus 139 ~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~~~ 173 (661)
.++|+|+|||=++.++++.|.+.|. +|+|+.|...
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 157 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEK 157 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 3589999999999999999999998 5999988753
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.62 E-value=1.4 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=31.1
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
++|+|+|+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3699999999999999999999999999998654
No 496
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.61 E-value=1.7 Score=45.52 Aligned_cols=35 Identities=40% Similarity=0.553 Sum_probs=30.3
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCC-CcEEEEcCCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFG-IEVVVLEARE 172 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g-~~v~v~e~~~ 172 (661)
...+|+|||+|..|..+|..|...| .+|+|+++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4688999999999999999999876 5899998753
No 497
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.42 E-value=2 Score=42.12 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
...+|+|||+|-.|-..|..|++.|. ++++++..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999998 48888864
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.37 E-value=1.4 Score=46.02 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=29.9
Q ss_pred CcEEEEccChHHHHHHHHHHHCCCcEEEEcCCCC
Q psy6038 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173 (661)
Q Consensus 140 ~~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~~ 173 (661)
.+|.|+|+|.-|...|++|+++|.+|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988888866654
No 499
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.34 E-value=1.6 Score=45.19 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=30.2
Q ss_pred cEEEEccChHHHHHHHHHHHCCCcEEEEcCCC
Q psy6038 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172 (661)
Q Consensus 141 ~v~iiG~G~aGl~aa~~l~~~g~~v~v~e~~~ 172 (661)
+|.|||.|.-|..-|..|.++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999998864
No 500
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.24 E-value=2 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=29.5
Q ss_pred CCCcEEEEccChHHHHHHHHHHHCCC-cEEEEcCC
Q psy6038 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEAR 171 (661)
Q Consensus 138 ~~~~v~iiG~G~aGl~aa~~l~~~g~-~v~v~e~~ 171 (661)
...+|+|||+|-.|..+|..|++.|. ++++++..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999997 67777654
Done!