RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6038
(661 letters)
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 363 bits (932), Expect = e-109
Identities = 202/548 (36%), Positives = 290/548 (52%), Gaps = 99/548 (18%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYV-ADLGAMVVTGLG 199
K+IV+GAG +GL AARH+++ G V VLEAR R+GGR+ T + S V DLGA ++TG+
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVE 754
Query: 200 GN--------PINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRL 251
+ P +++ Q+ +EL + CPLY +VP D D+ +E E+N L
Sbjct: 755 ADVATERRPDPSSLICAQLGLELTVLNSDCPLYDVVTGE----KVPADLDEALEAEYNSL 810
Query: 252 LECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNT 311
L+ + L++ + E +S D L+ L+
Sbjct: 811 LD-----------------DMVLLVAQKGEHAMKMSLE-------DGLEYALK------- 839
Query: 312 TAVEFQKRSTRRDMNHLCTEYDQ----------LNEKKTQLQAKLHAMESNPPADVYLSV 361
RR M + D+ + T + E DV LS
Sbjct: 840 ----------RRRMPRPGVDIDETELGNAADDLYDSASTGVDGG--HCEKESKEDV-LSP 886
Query: 362 KDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFE-FTGSHLTVKKGYACVPTALAEGL 420
+R++++WHFA+LE+ A L +SL +W+QDD + F G+H +K GY+ V +LAEGL
Sbjct: 887 LERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL 946
Query: 421 DVHFNSSVTEIHYNSKGVTVKTVDPK----TGQNETVYTGDRVLCTLPLGILKACIQPPK 476
D+H N VT++ Y SK K + N + + GD VL T+PLG LKA +
Sbjct: 947 DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA-----E 1001
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFW 536
+ F+PPLPDWK SI+RLG+G+LNKVVL F ++FWD + + FG T RG+ F+FW
Sbjct: 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFW 1061
Query: 537 NLYQ---APVLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWK 579
N+ + APVL+ALV G+AA + +S +F VP P +VVT W
Sbjct: 1062 NVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWG 1121
Query: 580 ADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
DPF+ G+YS+VA+GASG DYD LG PV++ LFFAGE T + +P TV GA +SGL
Sbjct: 1122 RDPFSYGAYSYVAIGASGEDYDILGRPVENC-----LFFAGEATCKEHPDTVGGAMMSGL 1176
Query: 640 KEGGHIVD 647
+E I+D
Sbjct: 1177 REAVRIID 1184
Score = 32.5 bits (74), Expect = 1.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 71 FLHIRNRILQMWLENPKVQLTL-----EFVMQKIESPFNSEVQLVSRLHCYLERHGYINF 125
+L RN IL +W ++ L L + ESP S L+ ++ +L++ GYIN
Sbjct: 481 YLECRNMILGLWSKDVSRILPLADCGVTDTPSEDESPRAS---LIREVYLFLDQRGYINA 537
Query: 126 GI 127
GI
Sbjct: 538 GI 539
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 341 bits (875), Expect = e-106
Identities = 235/673 (34%), Positives = 323/673 (47%), Gaps = 136/673 (20%)
Query: 3 EIEENSNGTISSVAKTEGDVYDEDIEYHIPEGLEG-AAFQSRLPYDKMTTNEVQY--FPD 59
E SN T S + DE I + E A + P D +T E+++ P
Sbjct: 53 ESVNGSNQTTKSYP----GIGDEIITINKEATTEALLALTAGFPADSLTEEEIEFGVVPI 108
Query: 60 ISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLER 119
+ ++ IRN I+ W EN +T E + I +S L+ + YL
Sbjct: 109 VGGI---EQVNYILIRNHIISKWRENISSWVTKEMFLGSIPKHCSS---LLDSAYNYLVT 162
Query: 120 HGYINFGIFQRIT-PIPVKKS-GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177
HGYINFGI Q I P + S V+++GAG+SGLAAAR + +FG +V VLE R+R GGR
Sbjct: 163 HGYINFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222
Query: 178 IVTFK----KSNYVADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDN 233
+ T K + ADLG V+TG GNP+ I+ARQ+ L K+
Sbjct: 223 VYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKV---------------- 266
Query: 234 LQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEIL 293
+DK C Y ++GKP+ ++L+ E+ N++L
Sbjct: 267 ----RDK-------------CPLY--------RVDGKPVDPDVDLKVEVA-----FNQLL 296
Query: 294 VQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNP 353
+ L Q + +V +D L A L
Sbjct: 297 DKASKLRQLMGDVSMD------------------------------VSLGAALETFRQVS 326
Query: 354 PADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVP 413
DV + ++ L +WH ANLE+ANA ++ LSL WDQDD ++ G H + G +
Sbjct: 327 GNDV--ATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLV 384
Query: 414 TALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQ 473
ALAE + + + +V I Y S GV V N+ VY GD VLCT+PLG+LK
Sbjct: 385 QALAENVPILYEKTVQTIRYGSNGVKV------IAGNQ-VYEGDMVLCTVPLGVLKN--- 434
Query: 474 PPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELF 533
+ F P LP K+ I+RLG+GLLNKV + F +FW + FGH+ RGE F
Sbjct: 435 --GSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFF 492
Query: 534 LFWN---LYQAPVLLALVAGEAASILEDVSIFPTNT------------------VPQPKE 572
LF++ + P+L+ALVAGEAA E ++ PT+ VP P +
Sbjct: 493 LFYSYAPVAGGPLLIALVAGEAAHKFE--TMPPTDAVTRVLHILRGIYEPQGINVPDPLQ 550
Query: 573 TVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVH 632
TV TRW DPF+ GSYS VAVGASG DYD L V D RLFFAGE T R YPAT+H
Sbjct: 551 TVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDG----RLFFAGEATTRRYPATMH 606
Query: 633 GAFLSGLKEGGHI 645
GAF++GL+E ++
Sbjct: 607 GAFVTGLREAANM 619
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 284 bits (729), Expect = 3e-89
Identities = 155/514 (30%), Positives = 209/514 (40%), Gaps = 96/514 (18%)
Query: 149 ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILAR 208
++GLAAAR + + G +V VLEAR+RVGGRI T + ++ +LGA G N +N+L
Sbjct: 1 LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60
Query: 209 QINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLE 268
+ +EL + P P DL F L L+
Sbjct: 61 -LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLF-------LLLRSLLELELSL 112
Query: 269 GKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHL 328
+P+ L L + L++LD L D +A F +
Sbjct: 113 EEPIRR----ALLLLVALLLLAPELLELDLLS------FSDLLSAAGFLELFLLLF---- 158
Query: 329 CTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLK 388
R LL L + LA LSL+
Sbjct: 159 -----------------------------------RSLLAGALGFLPLELSARLALLSLR 183
Query: 389 HWDQDDDF-EFTGSHLTVKKGYACVPTALAEGLD---VHFNSSVTEIHYNSKGVTVKTVD 444
+D +D F G T+ G A A GL V N+ V I + GVTV TVD
Sbjct: 184 LFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLNTRVRSITKSGDGVTVTTVD 243
Query: 445 PKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVV 504
D V+ T+PLG+LK +LF PPLP K ++IR LG+G ++KV
Sbjct: 244 ------GRTIEADAVIVTVPLGVLKR-------ILFLPPLPAAKQEAIRNLGFGSVSKVF 290
Query: 505 LCFDKIFWDPAENLFGHVGSTTASRGELFLFWN---LYQAPVLLALVAGEAASILEDVS- 560
L F+ FW +LFG + + SRG L + VLL+ V G+AA LED+S
Sbjct: 291 LEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAARELEDLSD 350
Query: 561 -------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPV 607
+ VP P +V+ W DP+A+GSYS+ VG L PV
Sbjct: 351 EELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRYRPALRTPV 410
Query: 608 KDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKE 641
P LFFAGEHT YP TV GA SGL+
Sbjct: 411 -----GPGLFFAGEHTSGGYPGTVEGAVESGLRA 439
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 254 bits (649), Expect = 1e-74
Identities = 136/316 (43%), Positives = 174/316 (55%), Gaps = 40/316 (12%)
Query: 357 VYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTAL 416
V S ++RQLLDWH ANLE+ANA L+ LS +WDQDD +E G H + G + AL
Sbjct: 304 VARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINAL 363
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPK 476
EG+ + + +V I Y + GV V V+ D VLCT+PLG+LK +
Sbjct: 364 CEGVPIFYGKTVDTIKYGNDGVEVIA-------GSQVFQADMVLCTVPLGVLKK-----R 411
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFW 536
+ F P LP K+ +I RLG+GLLNKV + F +FW + FG + ++ RGE FLF+
Sbjct: 412 TIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFY 471
Query: 537 NLYQ---APVLLALVAGEAASILE--DVSIF-------------PTN-TVPQPKETVVTR 577
+ P L+ALVAGEAA E D S P VP P +T+ TR
Sbjct: 472 GYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTR 531
Query: 578 WKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLS 637
W +DP + GSYS V V +SGSDYD L V RLFFAGE T R YPAT+HGAFLS
Sbjct: 532 WGSDPLSYGSYSHVRVQSSGSDYDILAESVSG-----RLFFAGEATTRQYPATMHGAFLS 586
Query: 638 GLKEGGHIVDQILGAN 653
GL+E +IL
Sbjct: 587 GLREA----SRILHVA 598
Score = 135 bits (342), Expect = 3e-33
Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 14/189 (7%)
Query: 71 FLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQR 130
++ +RN IL W N + L+ + + + S + L+S + +L +GYINFG+
Sbjct: 93 YIVVRNHILARWRSNVGIWLSKGQIKETVSSEYE---HLISAAYDFLLYNGYINFGVSPS 149
Query: 131 IT-PIP-VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK---KSN 185
PIP G VI++GAG++GLAAAR + FG +VVVLE R R GGR+ T K K
Sbjct: 150 FASPIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQ 209
Query: 186 YVA-DLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLV 244
+ A DLG V+TG+ NP+ +LARQ+++ L K+ CPLY D V K+ D +
Sbjct: 210 FAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLY-----KPDGALVDKEIDSNI 264
Query: 245 EREFNRLLE 253
E FN+LL+
Sbjct: 265 EFIFNKLLD 273
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 243 bits (623), Expect = 9e-74
Identities = 153/515 (29%), Positives = 237/515 (46%), Gaps = 110/515 (21%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGN 201
VIVIG GI+G+AAAR + +V +LE+R+R+GGR+ T + D+GA + G+
Sbjct: 3 VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVC-- 60
Query: 202 PINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHT 261
N LA I L PLY++S +NS V D D LE SY
Sbjct: 61 NENPLAPLIGRLGL------PLYRTSGDNS----VLYDHD----------LE--SYALFD 98
Query: 262 LDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRST 321
+D N + P LV ++ E + +L ++ D+ +++ + ++ ++
Sbjct: 99 MDGNQV---PQELVTKVGETFERILEETEKVR------DEHEEDMSLLQAISIVLERHP- 148
Query: 322 RRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANATP 381
L +L + ++L W+ +E A
Sbjct: 149 -----EL----------------RLEGL-------------AHEVLQWYLCRMEGWFAAD 174
Query: 382 LASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVK 441
++SLK WDQ++ E G H + +GY V LA+GLD+ N VT+I GV V
Sbjct: 175 ADTISLKSWDQEELLE--GGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVT 232
Query: 442 TVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLN 501
++ T + D + +PLG+LKA I + F P LP+WK ++I LG G+ N
Sbjct: 233 V------EDGTTFVADAAIIAVPLGVLKANI-----IKFEPELPEWKEEAISDLGVGIEN 281
Query: 502 KVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQA---PVLLALVAGEAASILED 558
K+ L FD +FW E L G V T+ F NL++A PVL+ + AG A +E
Sbjct: 282 KIALHFDSVFWPNVEFL-GVVAPTSYGCS---YFLNLHKATGHPVLVYMPAGRLARDIEK 337
Query: 559 VS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLG 604
+S + P +P + +V+RW +DP + G YS+ VG Y+ L
Sbjct: 338 LSDEAAANFAMSQLKKMLP--DATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLR 395
Query: 605 LPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
PV + LFFAGE T ++P +VHGA+ +G+
Sbjct: 396 APVDN------LFFAGEATSSDFPGSVHGAYSTGV 424
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 252 bits (646), Expect = 1e-73
Identities = 191/599 (31%), Positives = 277/599 (46%), Gaps = 113/599 (18%)
Query: 71 FLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQR 130
++ +RN IL W N LT + ++ I + + LV + +L HGYIN
Sbjct: 168 YIVVRNHILARWRSNVSNWLTRDHALESIRAEHKN---LVDSAYNFLLEHGYIN------ 218
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL 190
FG+ V+ EA+ R + + +N V
Sbjct: 219 ------------------------------FGVAPVIKEAQLRSFEGV---EPANVV--- 242
Query: 191 GAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNR 250
+V GL G + ARQ LL +G + + + A ++ K K D V
Sbjct: 243 --VVGAGLAGL---VAARQ----LLSMGFKVVVLEGRARPGGRVKTMKMKGDGVV----- 288
Query: 251 LLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDN 310
+ L ++ + G PL + L +L L ++ +I L D + ID+
Sbjct: 289 ---AAADLGGSV-LTGINGNPLGV---LARQLGLPLHKVRDI-CPLYLPDGKAVDAEIDS 340
Query: 311 TTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKL-HAMESNPPA-DVYLSVKDRQLLD 368
F K ++ +C + E+ + L A+E+ V ++R LL+
Sbjct: 341 KIEASFNKL-----LDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLN 395
Query: 369 WHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSV 428
WH ANLE+ANA+ +++LS+ +WDQDD +E G H + G LA+ L + + +V
Sbjct: 396 WHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTV 455
Query: 429 TEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWK 488
I Y GV V GQ + GD VLCT+PLG+LK + F P LP K
Sbjct: 456 ESIRYGVDGVIVYA----GGQE---FHGDMVLCTVPLGVLKK-----GSIEFYPELPQRK 503
Query: 489 VKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFW---NLYQAPVLL 545
+I+RLGYGLLNKV L F FW + FGH+ + RGE FLF+ ++ P+L+
Sbjct: 504 KDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLI 563
Query: 546 ALVAGEAASILEDVSIFPTNT------------------VPQPKETVVTRWKADPFAKGS 587
ALVAG+AA E +S P + VP P + V TRW D F GS
Sbjct: 564 ALVAGDAAVKFETLS--PVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGS 621
Query: 588 YSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIV 646
YS+VAVG+SG DYD L V D R+FFAGE T + YPAT+HGAFLSG++E +I+
Sbjct: 622 YSYVAVGSSGDDYDILAESVGDG----RVFFAGEATNKQYPATMHGAFLSGMREAANIL 676
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 127 bits (320), Expect = 6e-31
Identities = 91/306 (29%), Positives = 132/306 (43%), Gaps = 68/306 (22%)
Query: 397 EFTGSHLTVKKGYACVPTALAEGLD---VHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453
F G +T+ KGY V ALA L + VT I + + V + D +
Sbjct: 229 MFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFAD------GST 282
Query: 454 YTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCF----DK 509
T D V+ T+ LG+LKA I LF+PPLPD+K +I RLG+G++NK+ + D
Sbjct: 283 MTADHVIVTVSLGVLKAGIGE-DSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDG 341
Query: 510 IFWDPAENLFGHV---GSTTASRGELFLFW-----NLY----QAPVLLALVAGEAASILE 557
D A+ F + S + +R + +W ++ + VLL+ AG+ A LE
Sbjct: 342 SPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELE 401
Query: 558 DVS----------------------------IFPTNTVPQPKETVV-------TRWKADP 582
+S + ++W DP
Sbjct: 402 KLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDP 461
Query: 583 FAKGSYSFVAVGASGSDYDTLG--LPVKDDKDI-----PRLFFAGEHTIRNYPATVHGAF 635
GSYS+VAVG+SG D D + LP D D +L FAGE T R + +T HGA+
Sbjct: 462 LFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAY 521
Query: 636 LSGLKE 641
SGL+E
Sbjct: 522 FSGLRE 527
Score = 64.5 bits (157), Expect = 9e-11
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFG-----IEVVVLEARERVGGRIVTFKKSNYVADL 190
V K ++++IGAG++GL AA + E+ V+E +R+GGRI T + ++
Sbjct: 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEM 61
Query: 191 GAMVVTGLGGNPINILARQIN 211
GA + G+GG+P+ +A++
Sbjct: 62 GATWIHGIGGSPVYKIAQEAG 82
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 106 bits (266), Expect = 3e-24
Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 47/249 (18%)
Query: 424 FNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPP 483
N V EI Y+ GVTVKT D VY V+ ++ LG+L++ + + F PP
Sbjct: 249 LNKVVREISYSKNGVTVKTEDGS------VYRAKYVIVSVSLGVLQSDL-----IKFKPP 297
Query: 484 LPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAEN-----LFGHVGSTTASRGELFLFW-- 536
LPDWK+++I + + K+ L F FW P+ L+ H RG + FW
Sbjct: 298 LPDWKIEAIYQFDMAVYTKIFLKFPYKFW-PSGPGTEFFLYAHE-----RRG-YYPFWQH 350
Query: 537 --NLYQ-APVLLALVAGEAASILEDVSIFPT-------------NTVPQPKETVVTRWKA 580
N Y + VL V E + +E T +P+ + +V RW +
Sbjct: 351 LENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWS 410
Query: 581 DPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLK 640
+ F KGSYS +G S ++D + PV R++F GEHT Y VHGA+L+G+
Sbjct: 411 NRFFKGSYSNWPIGVSRYEFDQIRAPVG------RVYFTGEHTSEKYNGYVHGAYLAGID 464
Query: 641 EGGHIVDQI 649
+++ I
Sbjct: 465 TANDLLECI 473
Score = 69.7 bits (171), Expect = 2e-12
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
K S VI++GAG+SG++AA+ + + GIE +++LEA +R+GGR+ + +LGA V
Sbjct: 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWV 83
Query: 196 TGLGG---NPINILARQINM 212
G+GG NPI LA ++ +
Sbjct: 84 EGVGGPESNPIWELANKLKL 103
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a small
alpha-helical domain of about 85 amino acid residues
found in chromosomal proteins. It contains a helix-turn
helix motif and binds to DNA.
Length = 80
Score = 78.4 bits (194), Expect = 5e-18
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 39 AFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQK 98
A S D + E P+ + + + +L IRN I+ W NP LT ++
Sbjct: 1 ALSSWFDLDLLHEIEKALLPEF---FLKTPEVYLKIRNFIINEWRLNPGKYLTKTDA-RR 56
Query: 99 IESPFNSEVQLVSRLHCYLERHGYINF 125
+ +V +SR+H +LER G INF
Sbjct: 57 L---LKGDVNKISRVHDFLERWGLINF 80
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 82.1 bits (203), Expect = 2e-16
Identities = 57/234 (24%), Positives = 77/234 (32%), Gaps = 39/234 (16%)
Query: 425 NSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPL 484
N V I + GVTV D Y D VL T+PL IL + F P L
Sbjct: 226 NEPVRRIDQDGDGVTVTADDVGQ------YVADYVLVTIPLAILG-------QIDFAPLL 272
Query: 485 PDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHV------GSTTASR-----GELF 533
P ++ + + YG K+ + F + FW+ A L G G + G
Sbjct: 273 PAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGV 332
Query: 534 LFWNLYQAPVLLALV------AGEAASILED-VSIFPTNTVPQPKETVVTRWKADPFAKG 586
L A ALV A +L +F W DP+ G
Sbjct: 333 LLG--SYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLG 390
Query: 587 SYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLK 640
+ G Y TL P R+ FAG + + GA SG +
Sbjct: 391 GTAAYPPGQRTKLYPTLPAPH------GRIHFAGTEHASEFGGWLEGAIRSGQR 438
Score = 67.5 bits (165), Expect = 8e-12
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLG 191
K+ VI++GAG++GL+AA +++ G +V +LEAR+RVGGR +T + DLG
Sbjct: 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLG 59
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 77.1 bits (190), Expect = 9e-15
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGG 200
V+VIGAG++GLAAA + + G++V VLE +RVGGR TF+ + D G
Sbjct: 5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP 64
Query: 201 NPI 203
P+
Sbjct: 65 GPL 67
Score = 32.0 bits (73), Expect = 1.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 415 ALAEGLDVHFNSSVTEIH-YNSKGVTVKTVDPKTGQNETVYTGDRVLCTL 463
A G ++ + V++I KGV V+T D G+N D V+
Sbjct: 234 AREHGGEIRTGAEVSQILVEGGKGVGVRTSD---GEN---IEADAVVSNA 277
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 63.3 bits (155), Expect = 9e-13
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 144 VIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGN 201
++GAG+SGL AA + + G +V+VLE R+R+GG + + Y D GA + N
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHTSYPN 58
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 63.7 bits (156), Expect = 1e-10
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVTFKKSNYVADLGA 192
KV +IG GI+GL+AA + + G ++ +LEA +R+GG+I T +K + +LG
Sbjct: 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGP 55
Score = 33.3 bits (77), Expect = 0.47
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 403 LTVKKGYACVPTALAEGLD---VHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRV 459
T+K G + AL E L +H + VT+I + G + N D V
Sbjct: 214 GTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEI------VLSNGGEIEADAV 267
Query: 460 LCTLPLGILKACIQPPK 476
+ +P +L + P
Sbjct: 268 IVAVPHPVLPSLFVAPP 284
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 58.9 bits (143), Expect = 4e-09
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL 198
K+ +IG GI+GL+AA +++ G +EV + EA +RVGG + T K ++ + G
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHF--- 58
Query: 199 GGNPINILARQINMELLK 216
+ ++ ++L+K
Sbjct: 59 ------LARKEEILDLIK 70
Score = 39.2 bits (92), Expect = 0.006
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 404 TVKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLC 461
++ G + ALAE L + + VT+I G T+ V + T D V+
Sbjct: 209 YLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEK------ITADGVIS 262
Query: 462 TLPLGILKACIQPP 475
T PL L +
Sbjct: 263 TAPLPELARLLGDE 276
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 58.5 bits (142), Expect = 6e-09
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
+VIGAG GLA A + GI V V+E R++ GGR + + D G V+T
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVIT 55
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 58.2 bits (141), Expect = 7e-09
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL--G 199
V+VIGAGI+GL AA + + G V +LE + GG TF++ + D+GA V GL G
Sbjct: 4 VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPG 63
Query: 200 GNPINILARQINMEL 214
G I R++ + L
Sbjct: 64 GIHARIF-RELGIPL 77
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 55.9 bits (135), Expect = 3e-08
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
V+++GAG +G +AAR + + G++V+VLE G +
Sbjct: 6 VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC 43
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 56.2 bits (136), Expect = 3e-08
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 142 VIVIGAGISGLAAA-RHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
V V+GAG+SGLAAA + G+ V+V EAR+RVGG I + + ++ + G
Sbjct: 15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGP 66
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 55.2 bits (133), Expect = 6e-08
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 141 KVIVIGAGISGLAAARHME----QFGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
V++IG GISGL AA ++E + +E+ ++EA +RVGG+I T K+ Y+ + G
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGP 59
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 54.0 bits (130), Expect = 1e-07
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGG 176
+ V V +IGAG SGLAAA ++Q G+ + V+ E R+ VGG
Sbjct: 1 MTVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 51.4 bits (124), Expect = 9e-07
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
K+ ++G GI+GLAAA + + G EV V EA +++GG
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
Score = 32.2 bits (74), Expect = 0.92
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 23/100 (23%)
Query: 405 VKKGYACVPTALAE-----GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRV 459
++ G+A + ALAE G ++ + VT + + GVT VD D V
Sbjct: 193 LEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVD------GEEEDFDAV 246
Query: 460 LCTLPLGILKACIQPPKDVLFNPPLPD---WKVKSIRRLG 496
+ T P IL P LP +++ I G
Sbjct: 247 ISTAPPPILAR---------LVPDLPADVLARLRRIDYQG 277
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 51.9 bits (125), Expect = 1e-06
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 119 RHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
G+ + + P + KV VIGAG +GLAAA + + G V V E E GG
Sbjct: 520 EKGWDEY-KQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 50.3 bits (120), Expect = 2e-06
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V++IG GI GL+AA ++ + G +V VLEA E GG
Sbjct: 6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 50.2 bits (121), Expect = 2e-06
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 134 IPVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
PVK++GK V V+G+G +GLAAA + + G +V V E +R+GG
Sbjct: 137 PPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 50.2 bits (121), Expect = 3e-06
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 117 LERHG---YINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
LER+ + G K KV VIGAG +GL AA + + G +V + EAR++
Sbjct: 117 LERYITDWAMETGWVLFKRAPKTGK--KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174
Query: 174 VGG 176
GG
Sbjct: 175 AGG 177
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 49.9 bits (120), Expect = 3e-06
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 133 PIPVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
P P +GK V VIG G +GL+AA H+ + G V + EA ++GG
Sbjct: 130 PAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 48.7 bits (116), Expect = 7e-06
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG-- 199
IVIG+GI GL A + G +V+VLE GG F++ Y D+GA ++ G G
Sbjct: 3 AIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDK 62
Query: 200 GNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLL-ECTSYL 258
G N+L R L +G + + +L P + V RE++ + E +
Sbjct: 63 GT-TNLLTRA----LAAVGRKLETIPDPVQIHYHL--PNGLNVKVHREYDDFIQELVAKF 115
Query: 259 SH 260
H
Sbjct: 116 PH 117
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 48.2 bits (115), Expect = 9e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY 186
+V + GAG++GLAAA + G +V + EAR+R+GG++ +++ S+
Sbjct: 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG 47
Score = 32.8 bits (75), Expect = 0.65
Identities = 51/260 (19%), Positives = 79/260 (30%), Gaps = 46/260 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDV 478
G VH + V E+ + K E L ++ A
Sbjct: 229 GRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQ-------AALAVVDAFAVQRFKR 281
Query: 479 LFNPPLP-DWKVKSIRRLGYGL----LNKVVLCFD-KIFWDPAENLFGHVGSTTASRGEL 532
LP +W S YGL + + L FD + N + + S L
Sbjct: 282 D----LPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTL 337
Query: 533 F-LFWNLYQAPVLLALVAGEAASILEDVSIFPTNTVPQP-KETVVTRWKA------DPFA 584
+ +L A V A LE V + P E +V ++ A
Sbjct: 338 GGVVADL--ALTSPDYVEPGAGCYLEKV-LAPGWPFLFESDEAIVATFEKELYELVPSLA 394
Query: 585 KG-----------SYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHG 633
+ S +A G+ + IP L AG++T + Y ++ G
Sbjct: 395 EAKLKSSVLVNQQSLYGLAPGSYHYRPEQ-------KTPIPNLLLAGDYTKQPYLGSMEG 447
Query: 634 AFLSGLKEGGHIVDQILGAN 653
A LSGL I+D +
Sbjct: 448 ATLSGLLAANAILDNLGHHA 467
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 47.9 bits (114), Expect = 1e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
+ ++GAGI+GLAAA + + G EV V E VGGR+ T + D GA
Sbjct: 4 IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFK 58
Score = 36.3 bits (84), Expect = 0.047
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQP 474
LA L V + VTE+ T+ T D G D V+ +P +
Sbjct: 113 FLATDLTVVLETRVTEVARTDNDWTLHTDD---GTRH--TQFDDVVLAIPAPQTATLLTT 167
Query: 475 PKDVL 479
D L
Sbjct: 168 DADDL 172
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 46.9 bits (112), Expect = 1e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
V+VIG GI GL+ A + + G+ V +LE +
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGD 32
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 47.9 bits (114), Expect = 1e-05
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 129 QRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKK 183
+ + I V+ S V+VIG G++G+ AA + G +V ++E +GGR+ K
Sbjct: 114 EPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNK 168
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 46.0 bits (110), Expect = 4e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
KV++ G GI GL A + Q GIEVVV EA +
Sbjct: 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 46.3 bits (110), Expect = 5e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 127 IFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ ++P VIVIGAG +G++AA G++V+++E E VGG
Sbjct: 4 VVSELSPERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 45.3 bits (108), Expect = 8e-05
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACI--QP 474
A G V N+ V +H++ G V T E T D+V+ ++PL L A + P
Sbjct: 230 ALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPP 289
Query: 475 PKDVLF 480
P +V
Sbjct: 290 PPEVRA 295
Score = 44.5 bits (106), Expect = 1e-04
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG--RIVTFK 182
V++IGAG +GL AA + + G V VLEA VGG R VT+K
Sbjct: 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK 49
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 45.3 bits (107), Expect = 8e-05
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL 190
+ V+V+GAG GL AA + G +V ++EA +R+GG+++ + + +A+L
Sbjct: 132 GAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAEL 187
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 45.5 bits (108), Expect = 8e-05
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMV 194
P ++ +V+V+G G +GL AA + G V + E +R+GG++ + + ++
Sbjct: 375 PPRRRKRVLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGGQVRLAARLPGRGEFADLI 434
Query: 195 VT 196
Sbjct: 435 RN 436
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 44.3 bits (105), Expect = 1e-04
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
V ++GAG +GLA A + + G++V +LE R
Sbjct: 4 DVAIVGAGPAGLALALALARAGLDVTLLERAPR 36
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 44.4 bits (105), Expect = 2e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
P KK+ KV ++G+G +GL+AA + G EV V E+ + GG
Sbjct: 279 PEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 129 QRITPIPVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+R P KSGK V +IGAG +GL AA ++ + G +V + +A E+ GG
Sbjct: 182 ERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 43.7 bits (104), Expect = 3e-04
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV--GGRIVTF-KKSNYVAD-LGA---M 193
V+V+GAG GLA A + Q G+ VV+L+ + + G R + F K+S + D LG M
Sbjct: 25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERM 84
Query: 194 VVTGL 198
V G+
Sbjct: 85 VDKGV 89
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 43.3 bits (102), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 131 ITP-IPVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ P P K++GK V V+G+G +GLAAA + + G V V E +R GG
Sbjct: 133 VQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 43.4 bits (102), Expect = 4e-04
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KK GKV + G+G +GLAAA + ++G++V V EA VGG
Sbjct: 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467
>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase.
Length = 567
Score = 43.3 bits (102), Expect = 4e-04
Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 130 RITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK 182
R P P K KV++ GAG++GL+ A+++ G + ++LEAR+ +GG++ +K
Sbjct: 85 RSAPRPAKPL-KVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWK 136
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V ++GAG SGL AA ++ + G++V V E + GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 40.6 bits (96), Expect = 5e-04
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVL----EARERV----GGRIVTFK 182
+T KV+VIGAG+ GL AA + G EV VL ++ G R T
Sbjct: 12 LTGAGGVPPAKVVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESLLGARFTTLY 71
Query: 183 KSNYV-------ADL--GAMVVTG 197
+ ADL GA+++ G
Sbjct: 72 SQAELLEEAVKEADLVIGAVLIPG 95
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 42.0 bits (99), Expect = 6e-04
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V++IG G +GLAAA + + G++V ++E
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCY 36
Score = 36.2 bits (84), Expect = 0.038
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177
+ +V+V+G G GL A + + G EV V+E R+R+ R
Sbjct: 140 ELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLAR 180
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 42.2 bits (100), Expect = 7e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIGAG +G AA Q G++V ++E ER+GG
Sbjct: 7 VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41
Score = 30.6 bits (70), Expect = 2.8
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
++++G G GL A G +V V+E +R+
Sbjct: 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 41.9 bits (99), Expect = 8e-04
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
K V+++G GI GLAAA + + GI+V +LE +G
Sbjct: 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS-NYVADLGAMVVTGLG 199
VI+IG G +GL AA + + G++VV++ GG++ NY G
Sbjct: 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGF--------PG 56
Query: 200 GNPINILARQINMELLKIG 218
G L Q+ + K G
Sbjct: 57 GILGPELMEQMKEQAEKFG 75
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 41.7 bits (98), Expect = 0.001
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ K KV VIG+G +GL+ A + + G +V V EA +GG
Sbjct: 426 VAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 41.3 bits (97), Expect = 0.002
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 133 PIPVKKSG---KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF--KKSNYV 187
P P G KV +IGAG++G++ A + G EV + E+R +GG++ +F K N++
Sbjct: 66 PEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI 125
Query: 188 ADLGAMVVTGLGGNPINILAR 208
++G V G N ++ +
Sbjct: 126 -EMGLHVFFGCYNNLFRLMKK 145
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
VI++GAG SGL AA ++ + G++V VLE GG
Sbjct: 24 VIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGG 200
K+ +IGAGI GL AA +++ G EV V E K+ V ++GA + G+G
Sbjct: 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFE-------------KNESVKEVGAGI--GIGD 46
Query: 201 NPINILAR 208
N I L
Sbjct: 47 NVIKKLGN 54
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 40.3 bits (95), Expect = 0.002
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
I+IG G +GL AA + G+ V++LE +++G
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 40.4 bits (95), Expect = 0.003
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 133 PIPVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
+P ++GK V VIGAG +GLAAA + + G +V V E GG +
Sbjct: 116 ELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLL 162
Score = 30.0 bits (68), Expect = 4.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 133 PIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
P K +V+VIG G + + A + G + V RE
Sbjct: 256 RTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRED 296
>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 40.3 bits (95), Expect = 0.003
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
VIG G SG+AAAR ++ G EVVV + +
Sbjct: 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
VI++GAG SGL AA ++ + G++V + E + GG I
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 40.3 bits (95), Expect = 0.003
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
K KV+V+GAG+SGLA A+ +++ G +V++ + +E
Sbjct: 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEED 40
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 40.2 bits (94), Expect = 0.003
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
S V VIGAG +GL AAR + + G VVV E ++VGG
Sbjct: 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum) have
a conserved pathway from two molecules geranylgeranyl-PP
to one of all-trans-lycopene. Members of this family are
the enzyme pytoene desaturase (also called phytoene
dehydrogenase). This model does not include the region
of the chloroplast transit peptide in plants. A closely
related family, excluded by this model, is zeta-carotene
desaturase, another enzyme in the same pathway
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 453
Score = 39.8 bits (93), Expect = 0.004
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGL 198
+V + GAG++GL+ A+++ G +VLEAR+ +GG++ +K + G TGL
Sbjct: 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDED-----GDWYETGL 53
Score = 32.1 bits (73), Expect = 0.98
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKT--VDPKTGQNETVYTGDRVLCTLPLGILKACI-Q 473
+ G +V NS + EI N G +VK + GQ T D + +P+ I K + Q
Sbjct: 225 SRGGEVRLNSRLKEIVLNEDG-SVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ 283
Query: 474 PPKDVLF 480
P K + F
Sbjct: 284 PWKQMPF 290
Score = 30.6 bits (69), Expect = 3.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 613 IPRLFFAGEHTIRNYPATVHGAFLSG 638
IP F AG++T + Y A++ GA LSG
Sbjct: 420 IPNFFLAGDYTKQKYLASMEGAVLSG 445
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 39.6 bits (93), Expect = 0.004
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
V+V+GAG +G +AA + G+ V++LE +
Sbjct: 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 39.0 bits (91), Expect = 0.004
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+++GAG SGL AA ++ + G++V ++E GG
Sbjct: 20 VVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 39.2 bits (92), Expect = 0.006
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG+G++GLAAA + G++V V+E + GG
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 39.0 bits (91), Expect = 0.007
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
V VIG G SG AA + + GIE ++LE
Sbjct: 3 VAVIGGGPSGATAAETLARAGIETILLE 30
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 38.8 bits (91), Expect = 0.007
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
KK KV VIG+G +GL A + + G +V + EA GG +V
Sbjct: 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180
Score = 31.5 bits (72), Expect = 1.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
P+K KV V+G G + AAR + G EV ++ R
Sbjct: 277 PIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 38.5 bits (90), Expect = 0.008
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+++GAG+SG A Q G V+++E R +GG
Sbjct: 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 38.7 bits (91), Expect = 0.009
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
KV+++G GI GL+AA + + GI V ++E
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 38.5 bits (91), Expect = 0.009
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVL--------EARERVGGRIVTFKKSN 185
+P KV+++GAG+ G AAR G EV VL + GGR+ T +
Sbjct: 163 VPGVPPAKVVILGAGVVGENAARVALGLGAEVTVLDINLERLRYLDDIFGGRVTTLYSNP 222
Query: 186 YV-------ADL--GAMVVTG 197
ADL GA+++ G
Sbjct: 223 ANLEEALKEADLVIGAVLIPG 243
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 38.6 bits (90), Expect = 0.009
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 136 VKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR----IVTFKKSNYVADL 190
V +GK V VIGAG +GLA A + + G++VVV + +GG I +FK V
Sbjct: 137 VVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSR 196
Query: 191 GAMVVTGLG 199
+ T +G
Sbjct: 197 RREIFTAMG 205
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 38.4 bits (90), Expect = 0.011
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
V+V+G+G++GL AA + G V+V+
Sbjct: 19 VVVVGSGVAGLTAALAARRAGRRVLVV 45
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 38.6 bits (90), Expect = 0.011
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
V+V+GAG +GLAAA + G V++++ + GG +
Sbjct: 166 VLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSL 202
>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 38.2 bits (90), Expect = 0.012
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER--VGGRI 178
+V +IGAG +GL + + GI+ VVLE R R V GRI
Sbjct: 4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRI 43
>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 150
Score = 36.4 bits (85), Expect = 0.014
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV--------GGRIVTFK 182
+ KV+VIG G+ GL AA + G V +L+ R + T
Sbjct: 12 LGGAGGVPPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDI 71
Query: 183 KSN 185
SN
Sbjct: 72 FSN 74
>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 37.7 bits (88), Expect = 0.015
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVL---------EARERVGGRIVTFKKSN 185
V+ G V+V+GAG GL A + G VV++ A+E G +V +
Sbjct: 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED 224
Query: 186 YVADLGAMVVTGLG 199
+ G G
Sbjct: 225 DAGAEILELTGGRG 238
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 38.2 bits (89), Expect = 0.015
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 136 VKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181
V KS K V +IGAG +GLA A + + G+ V V + +GG ++TF
Sbjct: 323 VTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG-LLTF 368
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 38.2 bits (89), Expect = 0.016
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
KV VIGAG +GL+A + + G V V E +E+ GG +
Sbjct: 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVV 576
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 38.0 bits (89), Expect = 0.016
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL--EARERVGG 176
VIV+GAG++GL AA + G V++L E +GG
Sbjct: 7 VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43
>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 37.5 bits (88), Expect = 0.019
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM---VVTG 197
KV+V+G SG AAA+ + + G V V + + F ++ +L V+
Sbjct: 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGK--------PFSENPEAQELLEEGIKVIC- 57
Query: 198 LGGNPINIL 206
G +P+ +L
Sbjct: 58 -GSHPLELL 65
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 37.9 bits (88), Expect = 0.019
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVL--EARERVGGR 177
+ VIV+GAG++GL AA + G V++L E + +GG+
Sbjct: 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 37.3 bits (87), Expect = 0.020
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER-VGGRIVTFKKSNYVADLGAMVVTGLGG 200
+I++GAGI GLA A + G+ V V+E R G + F G + TG
Sbjct: 3 LIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNF---------GQVWPTGQAP 53
Query: 201 NPINILARQ 209
P AR+
Sbjct: 54 GPAWDRARR 62
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 37.5 bits (88), Expect = 0.021
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 142 VIVIGAGISG----LAAARHMEQFGIEVVVLEARERVGG 176
V+V+G G +G +AAAR G +V+++E R +GG
Sbjct: 2 VVVVGGGPAGVAAAIAAARL----GAKVLLVERRGWLGG 36
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway
[Energy metabolism, Other].
Length = 390
Score = 37.4 bits (87), Expect = 0.022
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER--VGGRI 178
+V +IGAG SGL + + + GI+ V+LE + R V GRI
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRI 43
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase.
Carotene 7,8-desaturase, also called zeta-carotene
desaturase, catalyzes multiple steps in the pathway from
geranylgeranyl-PP to all-trans-lycopene in plants and
cyanobacteria. A similar enzyme and pathway is found in
the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 37.5 bits (87), Expect = 0.022
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181
KV ++GAG++GL+ A + G EV + E+R +GG++ ++
Sbjct: 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSW 41
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 37.5 bits (87), Expect = 0.022
Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 142 VIVIGAGISGLAAARHMEQ------FGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
V+VIG GI+GL+ ++E+ + ++++E E +GG+I + ++ +++ + GA
Sbjct: 4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGA 60
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 37.5 bits (87), Expect = 0.026
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+VIV+G G++G +AA G +V++LE ++GG
Sbjct: 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on a
flavinoid cofactor.
Length = 400
Score = 36.9 bits (86), Expect = 0.028
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
V++IGAG +GL+ + +++Q GI+ VVLE + V
Sbjct: 3 VVIIGAGQAGLSVSYYLKQAGIDHVVLE-KHTVA 35
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 37.0 bits (86), Expect = 0.030
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG+G +GL+AA G++V+V+E GG
Sbjct: 15 VLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 36.7 bits (85), Expect = 0.031
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
I++GAG+SG+ A + Q V+V+E R +GG
Sbjct: 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 36.8 bits (85), Expect = 0.038
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KV VIGAG +GLA A + + G V V EA + GG
Sbjct: 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170
Score = 32.5 bits (74), Expect = 0.67
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
TP+ K V+VIG G + + +AR + G EV L R R
Sbjct: 267 TPVYAGK--SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 36.9 bits (86), Expect = 0.038
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE------ARE--RVGGRIVTFKKSNYVA 188
+ K +VIG G+ GL AAR ++ G+EV V+ R+ R GR++ K +
Sbjct: 143 RNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRK----LE 198
Query: 189 DLGAMVVTG 197
DLG V+
Sbjct: 199 DLGIKVLLE 207
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 33.7 bits (78), Expect = 0.039
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+V+V+G G GL A + + G +V V+E R+R+
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRL 34
Score = 29.9 bits (68), Expect = 0.69
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVD 444
G++V N++V EI N GV VK
Sbjct: 52 KNGIEVLLNTTVEEIEGNGDGVVVKLKT 79
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 36.1 bits (84), Expect = 0.039
Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLE---------ARERVGGRIVTFKKSNY--VAD 189
K+I+IGAG G + AR + + G VV+++ + + +V ++ + +
Sbjct: 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEE 61
Query: 190 LGA----MVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKD-DLV 244
G VV G + +N + + ++ + + A N ++ +V + D++
Sbjct: 62 AGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI----ARARNPEHEKVLEKLGADVI 117
Query: 245 ---EREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPV 285
E+ + L LD L G ++ E E P+
Sbjct: 118 ISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIEEKVAEDSPL 161
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
envelope biogenesis, outer membrane].
Length = 448
Score = 36.5 bits (85), Expect = 0.043
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
KV+V+G G SGLAAAR + + G EV V + R
Sbjct: 9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP 40
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 36.7 bits (85), Expect = 0.047
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
++ K VIG G+ GL AA ++ G++V V+
Sbjct: 138 QRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIH 170
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 36.2 bits (84), Expect = 0.049
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG+G GL+AA + G++VVVLE GG
Sbjct: 12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 36.3 bits (84), Expect = 0.050
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 11/42 (26%)
Query: 141 KVIVIGAGISGLAAA-----RHMEQFGIEVVVLEARERVGGR 177
K+ VIG+GISGL+AA RH +V + EA R+GG
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRH------DVTLFEADRRLGGH 45
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 36.1 bits (84), Expect = 0.051
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
V+++G G +GL A + + G+ VV++E
Sbjct: 4 VLIVGGGPAGLMLALLLARAGVRVVLVERHAT 35
Score = 29.2 bits (66), Expect = 6.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453
A A G V F + V + + GVT D + G+ TV
Sbjct: 111 AEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTV 149
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 36.0 bits (84), Expect = 0.052
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
VI+IG G +GL AA + G V++++ ++G +I
Sbjct: 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI 42
>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 36.3 bits (84), Expect = 0.054
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+P + SG+V+V GAG+SG A + + G +VVV + E
Sbjct: 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 35.6 bits (83), Expect = 0.068
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
VIVIG G +GL AA + G V++++ +++G
Sbjct: 2 DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLG 36
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 35.7 bits (83), Expect = 0.071
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 122 YINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ F F P KV +IGAG +GLAAA ++ G EV V + GG
Sbjct: 3 GMKFA-FMCKEKPPPT-GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 36.0 bits (84), Expect = 0.074
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
F R + +IG GI+G A A + + G +V + EA E
Sbjct: 252 FARPGSPKARD---AAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 33.7 bits (78), Expect = 0.075
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTG 197
+I+IG G G + A + + G +VVV++ ++ + + G VV G
Sbjct: 1 IIIIGYGRVGRSLAEELREGGPDVVVIDKDP---------ERVEELREEGVPVVVG 47
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 35.8 bits (83), Expect = 0.078
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLE 169
V+VIG G +GL AA + G++V +L
Sbjct: 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLS 36
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 35.7 bits (83), Expect = 0.081
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRV 459
A A G+++ N+ VT I S GV V T E V
Sbjct: 163 AQANGVELRLNTEVTGIEKQSDGVFVLN----TSNGEETLEAKFV 203
Score = 31.5 bits (72), Expect = 1.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI--EVVVLEARERVG 175
V++IG GI G A A + ++ V +LE + V
Sbjct: 5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 34.6 bits (80), Expect = 0.082
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIE-VVVLEARERVGG 176
+V+GAG +G+A A H+ G V++++ + GG
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGG 35
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 35.3 bits (82), Expect = 0.096
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
++++G G+ GL A + FG+EV V+EA +R+
Sbjct: 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215
Score = 33.0 bits (76), Expect = 0.57
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+++IG G G AA Q G++ ++E + ++GG
Sbjct: 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVE-KGKLGG 40
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 35.3 bits (82), Expect = 0.10
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
++V+GAG +GL+ AR + G++V ++E
Sbjct: 6 IVVVGAGPAGLSFARSLAGSGLKVTLIE 33
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 35.3 bits (82), Expect = 0.12
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
VIVIG GI+G AR G++V ++E
Sbjct: 14 DVIVIGGGITGAGIARDAAGRGLKVALVEKG 44
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 34.8 bits (81), Expect = 0.12
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 142 VIVIGAGISGLAAARHMEQF--GIEVVVLEARERVG 175
++IG GI GL+ A +++ G + VLE
Sbjct: 5 FVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 34.7 bits (80), Expect = 0.13
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 66 HSHKTFLHI---RNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLE-RHG 121
TFLH R + + + +LT + ++ +E+ F + S + Y + G
Sbjct: 88 QLLVTFLHAATNRGVVEVL----MRKKLTA-YALEDLENDFRPRLAPNSNIAGYAGVQLG 142
Query: 122 YINFGIFQ--RITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
Q R+ KV++IGAG+ GL AA+ ++ G V+V + +E
Sbjct: 143 AYELARIQGGRMGGAGGVPPAKVLIIGAGVVGLGAAKIAKKLGANVLVYDIKE 195
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 34.9 bits (81), Expect = 0.13
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG +G +AA G+E V +E +GG
Sbjct: 7 VVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41
Score = 29.9 bits (68), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
+++V+G GI GL + G EV V+E
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 34.8 bits (80), Expect = 0.15
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHM-EQFGI-EVVVLEARERVGG---RIVTFKKSNY 186
+P P K + VI++G G GLA A ++ ++ GI V VLE GG R T +SNY
Sbjct: 24 SPEP-KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNY 82
Query: 187 VAD 189
+
Sbjct: 83 LYP 85
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 34.7 bits (80), Expect = 0.16
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
V+V G G+SG AAA + + G V V++ +
Sbjct: 19 VVVAGLGVSGFAAADALLELGARVTVVDDGD 49
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 34.5 bits (80), Expect = 0.16
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
V+++GAG GL A + Q+G+ V+VLE +
Sbjct: 13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
Length = 391
Score = 34.3 bits (79), Expect = 0.17
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA--RERVGGRIVTF 181
KV + GAGI+G A + ++G E ++E R GG +V F
Sbjct: 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDF 44
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 34.4 bits (80), Expect = 0.17
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
IVIG G G+A+A +G +V ++EA+ R+GG
Sbjct: 8 IVIGGGSGGIASANRAAMYGAKVALIEAK-RLGG 40
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.5 bits (80), Expect = 0.18
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 277 ELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRST----RRDMNHLCTEY 332
EL+EELK + + E+ +L+ + + L+ +P + +KR L E
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 333 DQLNEKKTQLQAKLHAMESN 352
++L E+ +L+ +L ++ S
Sbjct: 391 EELEEELKELKEELESLYSE 410
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 34.4 bits (79), Expect = 0.20
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
S V++IG G G AA Q G++V +E R +GG
Sbjct: 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40
Score = 29.0 bits (65), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
++VIGAG+ GL + G +V V+E +R+
Sbjct: 177 LVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 34.1 bits (79), Expect = 0.22
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA--RERVGG 176
V+VIG G + L AA + G V++LEA RE GG
Sbjct: 7 VLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 34.2 bits (79), Expect = 0.22
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
+G+ + N+ VT + N VT + G TG++VL
Sbjct: 223 KKGVKILTNTKVTAVEKNDDQVTYENK----GGETETLTGEKVL 262
Score = 29.9 bits (68), Expect = 4.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+ +++IG G+ G+ A G +V V+E +R+
Sbjct: 168 EVPESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRI 205
Score = 29.5 bits (67), Expect = 6.0
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
VIVIG G G AA Q G++V ++E +E +GG
Sbjct: 4 VIVIGGGPGGYVAAIRAAQLGLKVALVE-KEYLGG 37
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 445
Score = 34.1 bits (78), Expect = 0.23
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR---ERVG 175
K++V G G +G++ ++ + G EV +A ERV
Sbjct: 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVA 44
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 34.0 bits (79), Expect = 0.23
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
VIVIGAG G AA Q G++V ++E +E++GG
Sbjct: 7 VIVIGAGPGGYVAAIRAAQLGLKVAIVE-KEKLGG 40
>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 34.1 bits (79), Expect = 0.23
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARE 172
IV+G G +GL+ R + + GI V+++RE
Sbjct: 10 IVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 33.8 bits (78), Expect = 0.26
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
VI+IGAG +GL AA + + ++ +++E GG++ T
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLIE-GGEPGGQLTT 39
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 33.9 bits (78), Expect = 0.28
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGG 176
V+V+G+G +GL+AA ++ G VV+LE +GG
Sbjct: 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37
>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family
oxidoreductase 1. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp. The function of this
oxidoreductase is unknown.
Length = 633
Score = 34.1 bits (78), Expect = 0.28
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
G V+V+G G +GL AAR + G V + E +GG + + + L A+
Sbjct: 373 GDVLVVGGGPAGLEAARVLAARGHRVTLAERSAHLGGMLRIAARGPGLHRLAAL 426
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 34.0 bits (79), Expect = 0.28
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
VIVIGAG +G AAR + G +V ++E
Sbjct: 6 VIVIGAGPAGYVAARRAAKLGKKVALIE 33
Score = 33.2 bits (77), Expect = 0.50
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ VIG G+ GL + + + G++V V E +R+
Sbjct: 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 33.6 bits (78), Expect = 0.28
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
+V+V+G+G+ G+ +A ++ Q G EV V++ +
Sbjct: 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA 36
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 34.0 bits (78), Expect = 0.31
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181
+++G+G +G A + G+ V+VLEA GG
Sbjct: 10 YVIVGSGSAGSVLAARLSDAGLSVLVLEA----GGPDRRP 45
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 33.7 bits (77), Expect = 0.33
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 133 PIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS 184
P +K ++++GAG +G++AA + G+ V+LE GG T K S
Sbjct: 55 PSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN--TMKAS 104
>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase. The
sequences in this family are members of the pfam01593
superfamily of flavin-containing amine oxidases which
include the phytoene desaturases. These sequences also
include a FAD-dependent oxidoreductase domain,
pfam01266. The genes of the family modeled here are
generally in the same locus with genes involved in the
biosynthesis and elaboration of squalene, the
condensation product of the polyisoprenoid farnesyl
pyrophosphate. This gene and its association with hopene
biosynthesis in Zymomonas mobilis has been noted in the
literature where the gene symbol hpnE was assigned. This
gene is also found in contexts where the downstream
conversion of squalene to hopenes is not evidence. The
precise nature of the reaction catalyzed by this enzyme
is unknown at this time.
Length = 411
Score = 33.5 bits (77), Expect = 0.35
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 614 PRLFFAGEHTIRNYPATVHGAFLSG 638
P LF AG+ T +PAT+ GA SG
Sbjct: 378 PNLFLAGDWTATGWPATMEGAVRSG 402
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 33.3 bits (76), Expect = 0.39
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
VIV+GAGI G AA H+ + G + ++LE
Sbjct: 3 VIVVGAGIMGCFAAYHLAKHGKKTLLLE 30
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 33.3 bits (77), Expect = 0.43
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
IVIGAG +G A G++V ++E R +GG
Sbjct: 9 IVIGAGQAGPPLAARAAGLGMKVALIE-RGLLGG 41
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 32.2 bits (74), Expect = 0.43
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 144 VIGAGISGLAAA----RHMEQFGIEVVVLEARERVGGRI 178
+IGAG GL+ R +++ V + G +
Sbjct: 2 IIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGV 40
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 32.9 bits (76), Expect = 0.43
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLE 169
VI+IGAG GLA A ++ G+ +++E
Sbjct: 1 DVIIIGAGPCGLACAIEAQKAGLSYLIIE 29
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 33.4 bits (77), Expect = 0.45
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
V+++G G GLA A + + G++ +++E ++
Sbjct: 9 PVLIVGGGPVGLALALDLGRRGVDSILVERKD 40
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 33.3 bits (77), Expect = 0.46
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 142 VIVIGAGISGLAAA-RHMEQFGIEVVVL 168
V+VIG G++GL AA E G V ++
Sbjct: 5 VLVIGGGLAGLTAALAAAEA-GKRVALV 31
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 33.0 bits (75), Expect = 0.47
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR--------ERVGGRIVTFKKSN 185
+P + G V +IG G+ G AA+ G V +L+ GGRI T +
Sbjct: 162 VPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNA 221
Query: 186 YV-------ADL--GAMVVTG 197
Y ADL GA+++ G
Sbjct: 222 YEIEDAVKRADLLIGAVLIPG 242
>gnl|CDD|99815 cd06219, DHOD_e_trans_like1, FAD/NAD binding domain in the electron
transfer subunit of dihydroorotate dehydrogenase-like
proteins. Dihydroorotate dehydrogenases (DHODs) catalyze
the only redox reaction in pyrimidine de novo
biosynthesis. They catalyze the oxidation of
(S)-dihydroorotate to orotate coupled with the reduction
of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is
co-expressed with pyrK and both gene products are
required for full activity, as well as NAD binding.
NAD(P) binding domain of ferredoxin reductase-like
proteins catalyze electron transfer between an
NAD(P)-binding domain of the alpha/beta class and a
discrete (usually N-terminal) domain which vary in
orientation with respect to the NAD(P) binding domain.
The N-terminal domain may contain a flavin prosthetic
group, as in flavoenzymes, or use flavin as a substrate.
Ferredoxin is reduced in the final stage of photosystem
I. The flavoprotein Ferredoxin-NADP+ reductase transfers
electrons from reduced ferredoxin to FAD, forming FADH2
via a semiquinone intermediate, and then transfers a
hydride ion to convert NADP+ to NADPH.
Length = 248
Score = 32.5 bits (75), Expect = 0.48
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAA----ARHMEQFGIEV-VVLEARER 173
P ++ G V+ +G G+ G+A A+ +++ G V ++ AR +
Sbjct: 90 KPSEIENYGTVVFVGGGV-GIAPIYPIAKALKEAGNRVITIIGARTK 135
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins, cyclohexanone
mono-oxygenase and a number of different
mono-oxygenases.
Length = 532
Score = 33.2 bits (76), Expect = 0.48
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
KV VIGAG+SGL++ + + G+E E + +GG
Sbjct: 3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGG 38
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 32.9 bits (76), Expect = 0.49
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
A G ++ FN VT I + GVTV T + Y +++ +
Sbjct: 159 AREAGAELLFNEPVTAIEADGDGVTVTT-------ADGTYEAKKLVVS 199
Score = 29.4 bits (67), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA 170
VIVIG G G AA ++ + G+ V+ L+
Sbjct: 6 VIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 32.8 bits (75), Expect = 0.55
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI-VTFKKSNY 186
+I+IG G +GL+A + + ++ +++E ++ GG+I +T + NY
Sbjct: 7 LIIIGGGPAGLSAGIYAGRAKLDTLIIE-KDDFGGQITITSEVVNY 51
>gnl|CDD|217763 pfam03853, YjeF_N, YjeF-related protein N-terminus. YjeF-N domain
is a novel version of the Rossmann fold with a set of
catalytic residues and structural features that are
different from the conventional dehydrogenases. YjeF-N
domain is fused to Ribokinases in bacteria (YjeF), where
they may be phosphatases, and to divergent Sm and the
FDF domain in eukaryotes (Dcp3p and FLJ21128), where
they may be involved in decapping and catalyze
hydrolytic RNA-processing reactions.
Length = 170
Score = 31.8 bits (73), Expect = 0.55
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 28/98 (28%)
Query: 142 VIVIGAGISG---LAAARHMEQFGIEVVVL----------EAR------ERVGGRIVTFK 182
+++ G G +G LAAARH+ Q G +V VL +AR +++GG+IV
Sbjct: 32 LVLCGPGNNGGDGLAAARHLAQRGYKVTVLLLLPDEKLSEDARRALDILKKLGGKIVELN 91
Query: 183 KSNYVADLGAMVV------TGLGGN---PINILARQIN 211
+ + A ++ TGL L IN
Sbjct: 92 PDEDLEEAIADLIIDALFGTGLSRPLRGEYAELIEWIN 129
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 32.7 bits (75), Expect = 0.66
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
+ VIGAGI+G+ A + Q G +V V + R R
Sbjct: 3 HIAVIGAGITGVTTAYALAQRGYQVTVFD-RHR 34
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 32.6 bits (74), Expect = 0.70
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 115 CYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
C+ RH G R+ + ++ V+++GAG GL A Q +V V+E V
Sbjct: 125 CFTLRH----AGDAARLREV-LQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179
Query: 175 GGR 177
GR
Sbjct: 180 MGR 182
>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
Reviewed.
Length = 436
Score = 32.4 bits (75), Expect = 0.79
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
V VIGAG++G AA + + G+ V + E R
Sbjct: 4 PVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34
>gnl|CDD|129243 TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransferase. This model
represents an orthologous set of proteins present in
relatively few bacteria but very tightly conserved where
it occurs. It is closely related to gidA
(glucose-inhibited division protein A), which appears to
be present in all complete eubacterial genomes so far
and in Saccharomyces cerevisiae. It was designated gid
but is now recognized as a tRNA:m(5)U-54
methyltransferase and is now designated trmFO [Protein
synthesis, tRNA and rRNA base modification].
Length = 433
Score = 32.6 bits (74), Expect = 0.80
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
V VIG G++G AA + Q G+ V++ E R
Sbjct: 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMR 32
>gnl|CDD|235747 PRK06222, PRK06222, ferredoxin-NADP(+) reductase subunit alpha;
Reviewed.
Length = 281
Score = 32.1 bits (74), Expect = 0.81
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAA----ARHMEQFGIEVVVLEARERVGGR 177
P ++K G V+ +G G+ G+A A+ +++ G +V+ + +G R
Sbjct: 91 KPSEIEKFGTVVCVGGGV-GIAPVYPIAKALKEAGNKVITI-----IGAR 134
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 32.6 bits (75), Expect = 0.84
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM------VV 195
+VIGAG++GL A Q G++ +VL +V K+S+ A G M V
Sbjct: 8 ALVIGAGLAGLRVAIAAAQRGLDTIVLS--------LVPAKRSHSAAAQGGMQASLGNAV 59
Query: 196 TGLGGNP 202
G G N
Sbjct: 60 KGEGDNE 66
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 32.3 bits (73), Expect = 0.85
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
IV+GAG++G AA M + G++V+V+E + G + +T
Sbjct: 9 IVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT 46
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 32.2 bits (74), Expect = 0.87
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
V+V+G G+ G + A + Q G+ V +L R
Sbjct: 8 VVVVGGGLVGASLALALAQSGLRVALLAPR 37
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 31.5 bits (72), Expect = 0.89
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 273 SLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCT-- 330
+ ELQ+EL + + E+ QL L Q Q + + +T E + ++++ +
Sbjct: 66 ERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTL-EAELERLQKELARIKQLS 124
Query: 331 --------EYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDW 369
E +L E+ +L+ + A+E+ +++ + W
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAE-----NERLQENEQRRW 166
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 32.4 bits (74), Expect = 0.96
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 109 LVSRLHCYLERHGYINFGIFQRI----TPIPVKKSGKVIVIGAGISG-LAAARHMEQFGI 163
L + L YL + + + IPV +++G G G L + + GI
Sbjct: 383 LFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLAA-GI 441
Query: 164 EVVVLE-ARERV 174
+VV+E +R RV
Sbjct: 442 PLVVIETSRTRV 453
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 32.3 bits (73), Expect = 1.1
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181
KV VIGAG +GL A + + G++V V + +GG ++TF
Sbjct: 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG-MLTF 351
>gnl|CDD|188426 TIGR03911, pyrrolys_PylD, pyrrolysine biosynthesis protein PylD.
This protein is PylD, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 266
Score = 31.7 bits (72), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
KS V+VIG G G AAA H+ G V V +
Sbjct: 144 KSKDVLVIGLGPVGRAAAFHLVDKGFHVYVYDK 176
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 32.1 bits (74), Expect = 1.1
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 141 KVIVIGAGISGLAA 154
KV+VIGAG++GLAA
Sbjct: 167 KVLVIGAGVAGLAA 180
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 31.6 bits (72), Expect = 1.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ VIG G +GLA A + + G+ V ++E + G
Sbjct: 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36
>gnl|CDD|233889 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is
essential for cobalamin biosynthesis (by knockout of the
R. capsulatus gene ) and is complemented by the
characterized precorrin 3B synthase CobG. The enzyme has
been shown to contain flavin, heme and Fe-S cluster
cofactors and is believed to require dioxygen as a
substrate. This model identifies the N-terminal portion
of the R. capsulatus gene which, in other species exists
as a separate protein. The C-terminal portion is
homologous to the 2-component signal transduction system
protein CitB (TIGR02484) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 432
Score = 31.8 bits (72), Expect = 1.4
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 144 VIGAGISGLAAARHMEQFGIEVVVLEA--RERVGG 176
VIG G++GL AA + G V++LEA R R GG
Sbjct: 1 VIGGGLAGLCAAIEAARAGASVLLLEAAPRARRGG 35
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 31.4 bits (72), Expect = 1.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 130 RITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
T +P K+ VIGAG+ GL + G EV +LEA
Sbjct: 178 NFTEVP----KKLAVIGAGVIGLELGSVWRRLGAEVTILEA 214
>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional.
Length = 237
Score = 31.1 bits (71), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 367 LDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEG 419
LD AN + P+ L+ + W D TG+ T+K A VP AL G
Sbjct: 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIK---AAVP-ALKRG 131
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+G+G G+ AA G+E +++E +++VGG
Sbjct: 9 VVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 31.3 bits (71), Expect = 1.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
K +VIG G G+A+AR + G + +++EA++ +GG V
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCV 41
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 433
Score = 31.2 bits (71), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVV 167
K++++G G +G A AR + + G EV V
Sbjct: 1 KILILGLGKTGRAVARFLHKKGAEVTV 27
>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 165
Score = 30.2 bits (69), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVV 167
K K+ VIG G G A A ++ G+ V+V
Sbjct: 3 KGKKIAVIGYGSQGHAHALNLRDSGVNVIV 32
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 31.3 bits (72), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++VIG+G +G AA + G V V+E VGG
Sbjct: 8 LVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42
>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
translation [Translation, ribosomal structure and
biogenesis].
Length = 439
Score = 31.2 bits (71), Expect = 1.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
+ VIGAG++G AA + + G+ V++ E R
Sbjct: 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35
>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase. This enzyme, together
with glutamate-1-semialdehyde-2,1-aminomutase
(TIGR00713), leads to the production of
delta-amino-levulinic acid from Glu-tRNA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 417
Score = 31.2 bits (71), Expect = 2.0
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR---------ERVGGRIVTFKK-SNYV 187
K K ++IGAG G A+H+ + G+ +++ R + +GG V F+ Y+
Sbjct: 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYL 238
Query: 188 ADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVER 246
A+ A +V G P I++++ ++E PL+ ++ VP+D D V R
Sbjct: 239 AE--ADIVISSTGAPHPIVSKE-DVERALRERTRPLFII------DIAVPRDVDPAVAR 288
>gnl|CDD|215951 pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain
is a phosphopeptide binding motif.
Length = 67
Score = 28.3 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 13/50 (26%)
Query: 110 VSRLHCYLERHGYINF---------GIF---QRITPIPVK-KSGKVIVIG 146
VSR H + G F G F QR+ P PV+ + G VI +G
Sbjct: 18 VSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGPEPVRLRDGDVIRLG 67
>gnl|CDD|232869 TIGR00197, yjeF_nterm, yjeF N-terminal region. The protein region
corresponding to This model shows no clear homology to
any protein of known function. This model is built on
yeast protein YNL200C and the N-terminal regions of E.
coli yjeF and its orthologs in various species. The
C-terminal region of yjeF and its orthologs shows
similarity to hydroxyethylthiazole kinase (thiM) and
other enzymes involved in thiamine biosynthesis. Yeast
YKL151C and B. subtilis yxkO match the yjeF C-terminal
domain but lack this region [Unknown function, General].
Length = 205
Score = 30.5 bits (69), Expect = 2.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 139 SGKVIVI----GAGISGLAAARHMEQFGIEVVVLEARER 173
+G VI+ G G ARH++ FG+EV +L+ ER
Sbjct: 45 AGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFLLKKEER 83
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 31.1 bits (71), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
V++IG+G++GL AA + V VL
Sbjct: 10 VLIIGSGLAGLTAALSLAP-SFRVTVL 35
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 31.0 bits (70), Expect = 2.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEA 170
IVIG G GLAAA+ +G +V++L+
Sbjct: 6 IVIGGGSGGLAAAKEAAAYGAKVMLLDF 33
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 30.9 bits (70), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
G ++ GAG++GL+AA + G V ++E + +
Sbjct: 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 30.9 bits (70), Expect = 2.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 144 VIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
VIGAG G+ AAR G +V + E RVGG V
Sbjct: 7 VIGAGSGGVRAARLAAALGAKVAIAE-EFRVGGTCV 41
>gnl|CDD|232845 TIGR00145, TIGR00145, FTR1 family protein. A characterized member
from yeast acts as oxidase-coupled high affinity iron
transporter. Note that the apparent member from E. coli
K12-MG1655 has a frameshift by homology with member
sequences from other species [Unknown function,
General].
Length = 283
Score = 30.5 bits (69), Expect = 2.6
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 503 VVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLLALVAG 550
V C ++ W L G + ++S ++W + + L LV
Sbjct: 224 VSCCNPELDWLLFNGLLGWIYYLSSSYSYN-MYWLVLIIVLSLLLVEE 270
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 30.9 bits (71), Expect = 2.7
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGV-TVKTVDPKTGQNETVYT 455
++ V +I N G TV D KTG+ TV
Sbjct: 198 NFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRA 235
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 30.6 bits (70), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
VIVIG G +G+ AA + G + ++L
Sbjct: 7 VIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|219018 pfam06419, COG6, Conserved oligomeric complex COG6. COG6 is a
component of the conserved oligomeric golgi complex,
which is composed of eight different subunits and is
required for normal golgi morphology and localisation.
Length = 615
Score = 30.7 bits (70), Expect = 2.8
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 275 VIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKR--STRRDMNHLCTEY 332
+++ E +L + QL + + L + N T E + + + ++D L E
Sbjct: 29 LLKSNGE---ILKEFGPVAEQLKRIGEDLSKL---NNTCEEMKSQLNNAKQDTKDLLEEA 82
Query: 333 DQLNEKKTQLQAKLH 347
L E+K Q++ K
Sbjct: 83 STLMEQKRQIELKKK 97
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 30.4 bits (69), Expect = 2.8
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVLE---ARERV-----GGRIVTFKKSNYV---- 187
KV+V+G G+ G AA+ G +V +L+ R R GGR+ T +
Sbjct: 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEA 228
Query: 188 ---ADL--GAMVVTG 197
ADL GA+++ G
Sbjct: 229 VKKADLVIGAVLIPG 243
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 30.6 bits (69), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+G+G GL+AA G +V+V+E GG
Sbjct: 11 VVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 30.5 bits (70), Expect = 3.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEA-RER 173
F R+ PVK+ V+++G G G A+ +E+ G V ++E ER
Sbjct: 222 SEFGRLEK-PVKR---VMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 30.7 bits (69), Expect = 3.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 121 GYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
G I G+F I P ++ +G +++G G++G+ A M Q G E+VV E V G
Sbjct: 35 GAIGTGLFLGIGP-AIQMAGPAVLLGYGVAGIIAFLIMRQLG-EMVV---EEPVSGSFAH 89
Query: 181 F 181
F
Sbjct: 90 F 90
>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 96
Score = 28.7 bits (65), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQ---FGIEVV 166
K KV VIGAG G+ H Q +GI++V
Sbjct: 2 KDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMV 33
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 30.7 bits (69), Expect = 3.1
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 258 LSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEF- 316
+ + + S VIE +EL+ +SR++E L+ Q++ +F
Sbjct: 478 ENEEVAMVGSLVEESSAVIERSQELEGAVSRISEFTSVLEHEVTVCQDLLDGKADLEKFI 537
Query: 317 QKRSTRRD--MNHLCTEYDQLNE----KKTQLQAKLHAMESNPPADVYLSVKDRQLLDWH 370
Q+ S + +N + D E KK L K E N P +V +V L +
Sbjct: 538 QEFSLTLEWVVNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELE 597
Query: 371 FANLEFANAT 380
E N
Sbjct: 598 TLKSEKENLD 607
>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 29.8 bits (68), Expect = 3.2
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVL----EARERVGGRI 178
KV VIGAG G A+ + G+EVV++ EA E+ RI
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARI 42
>gnl|CDD|222162 pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the
rossmann domain found in the Xanthine dehydrogenase
accessory protein.
Length = 137
Score = 29.3 bits (67), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+++ GAG A AR G V V++ RE
Sbjct: 1 LVIFGAGHVAQALARLAALLGFRVTVVDPRE 31
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 30.4 bits (69), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+G+G +G+ AA G+ VV+E GG
Sbjct: 10 VVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 30.3 bits (68), Expect = 3.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
I++GAG++G AA + + G +V+V+E G + VT
Sbjct: 9 IIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT 46
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 564
Score = 30.5 bits (69), Expect = 3.5
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++V+G+G +G+AAA + G+ V+++E VGG
Sbjct: 19 LLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52
>gnl|CDD|129652 TIGR00561, pntA, NAD(P) transhydrogenase, alpha subunit. This
integral membrane protein is the alpha subunit of alpha
2 beta 2 tetramer that couples the proton transport
across the membrane to the reversible transfer of
hydride ion equivalents between NAD and NADP. An
alternate name is pyridine nucleotide transhydrogenase
alpha subunit. The N-terminal region is homologous to
alanine dehydrogenase. In some species, such as
Rhodospirillum rubrum, the alpha chain is replaced by
two shorter chains, both with some homology to the
full-length alpha chain modeled here. These score below
the trusted cutoff [Energy metabolism, Electron
transport].
Length = 511
Score = 30.3 bits (68), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
KV+VIGAG++GLAA G V + R V
Sbjct: 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV 199
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 30.3 bits (68), Expect = 3.7
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 229 ENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIE--------LQE 280
E +++ KD+++ +E E L E L F L L IE L++
Sbjct: 465 ELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQ 524
Query: 281 ELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNE 337
E + ++ + +Q D + + + A E ++ ++ + L E ++L E
Sbjct: 525 EKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEA-EQIAKQTIEALQAECEKLKE 580
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 30.3 bits (69), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEV 165
GKVIV+G G++GL A + G+ V
Sbjct: 2 AKGKVIVVGGGLAGLMATIKAAEAGVHV 29
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 30.4 bits (68), Expect = 3.9
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 238 KDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLD 297
+D+ + ER+ L + L T + + L E +E L+ + + N D
Sbjct: 384 RDRYEKTERKLRVLQKKIENLQETFR---RKERRLK---EEKERLRSLQTDTNT-----D 432
Query: 298 TLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADV 357
T + L+ + +E K RD + E++ ++ L+ ++ ++
Sbjct: 433 TALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLK----- 487
Query: 358 YLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFE 397
LS ++ QL + LAS LK Q D E
Sbjct: 488 -LSERELQLELLK------EEVSKLASNQLK---QRSDLE 517
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 30.0 bits (68), Expect = 4.1
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 135 PVKKSGKVIVIGAGISGLAA---ARHMEQFGIEVVVLE--------ARERVGGRIVTFKK 183
+K V+V+GAG GL A A+ G V+V + A+E ++ +K+
Sbjct: 131 VLKPGDTVLVLGAGGVGLLAAQLAKAA---GARVIVTDRSDEKLELAKELGADHVIDYKE 187
Query: 184 SNYVADL 190
+ +L
Sbjct: 188 EDLEEEL 194
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 30.1 bits (68), Expect = 4.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
++S + V+G G+ GL AA ++ G+E V+E
Sbjct: 143 RRSKRGAVVGGGLLGLEAAGALKNLGVETHVIE 175
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 29.8 bits (67), Expect = 4.3
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVV--------LEARERVGGRIVTFKKSNYVADLGA 192
+V+V+GAG+ GL AA G VV E G + + +A+
Sbjct: 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALA--EPEVLAERQG 180
Query: 193 MVVTGLG 199
+ G G
Sbjct: 181 GLQNGRG 187
>gnl|CDD|132449 TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein
UrtC. Members of this protein family are ABC
transporter permease proteins associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 313
Score = 29.9 bits (68), Expect = 4.4
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 20/69 (28%)
Query: 142 VIVIGAGISGLAAARHMEQFG------------IEVVVLEARERVGGRIVTFKKSNYVAD 189
V V+ AGI+G+A A ++ Q G IE+V+ A VGGR + A
Sbjct: 219 VFVLSAGIAGIAGALYVPQVGIISPSEMGIVPSIEMVIWVA---VGGR-----GTLIGAV 270
Query: 190 LGAMVVTGL 198
LGA++V
Sbjct: 271 LGALLVNYA 279
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 30.2 bits (68), Expect = 4.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN-YVADLG 191
KV ++G G++GL AA + + G +V ++ KKSN Y+A G
Sbjct: 3 KVGIVGGGLAGLTAAISLAKKGFDVTIIGPG---------IKKSNSYLAQAG 45
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.9 bits (68), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
V+V+G G +G AA G V+VLE
Sbjct: 23 VVVVGFGAAGACAAIEAAAAGARVLVLE 50
>gnl|CDD|240629 cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and
catalytic domains. Transhydrogenases found in bacterial
and inner mitochondrial membranes link
NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matrix side. DI contains 2
domains in Rossmann-like folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
a classical Rossmann domain.
Length = 363
Score = 29.7 bits (68), Expect = 5.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 13/50 (26%)
Query: 141 KVIVIGAGISGLAA---ARHMEQFGIEV----VVLEARERV---GGRIVT 180
KV+VIGAG++GL A A+ + G V V A+E+V G + V
Sbjct: 168 KVLVIGAGVAGLQAIATAKRL---GAVVEAFDVRPAAKEQVESLGAKFVE 214
>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 29.8 bits (68), Expect = 5.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 139 SGKVIVI--GAGISGLAAARHMEQFGIEVVVL----EARERVGGRI 178
+GKV ++ AG G A A+ + G VV+ EA E +
Sbjct: 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAEL 466
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 29.6 bits (67), Expect = 5.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 152 LAAARHMEQFG 162
LAAARHM Q+G
Sbjct: 146 LAAARHMHQYG 156
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 29.7 bits (67), Expect = 5.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+ V+G G+ G A A + G V V+E E
Sbjct: 6 IAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 29.4 bits (67), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVL 168
VIVIG G +G AA + G +V+++
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 29.7 bits (67), Expect = 5.8
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 558 DVSIFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLF 617
V+ P NT P WK K S V + T G K+ + L
Sbjct: 73 TVADMP-NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGG----VTQGNQGKELTEAYELK 127
Query: 618 FAG 620
AG
Sbjct: 128 EAG 130
>gnl|CDD|235504 PRK05562, PRK05562, precorrin-2 dehydrogenase; Provisional.
Length = 223
Score = 29.2 bits (66), Expect = 5.9
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVL------EARERVGGRIVTFKKSNY 186
KV++IG G + + + G V +L E + + K NY
Sbjct: 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNY 78
>gnl|CDD|237222 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase;
Provisional.
Length = 513
Score = 29.8 bits (67), Expect = 6.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V G+G G+A A + G+ V ++EA ++ GG
Sbjct: 10 VLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43
>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional.
Length = 255
Score = 29.3 bits (66), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 139 SGKVIVIGAGISG--LAAARHMEQFGIEVVVLEARERVGGR 177
+G+V VI G SG LA AR + G VVV + G
Sbjct: 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46
>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase;
Provisional.
Length = 450
Score = 29.3 bits (66), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLE 169
+V VIG G +G AA + + GIE ++E
Sbjct: 41 RVAVIGGGPAGACAAETLAKGGIETFLIE 69
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 29.6 bits (67), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGV-TVKTVDPKTGQNETV 453
+++ +N V +I NS G TV D TG T+
Sbjct: 197 NVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTI 232
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 29.4 bits (67), Expect = 6.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 134 IPVK--KSGKVIVIGAGISGLAAARHMEQFGIEVVV----LEARER 173
IPV V V G G SGLA AR + G EV+ +R +
Sbjct: 2 IPVTGFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAK 47
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 29.6 bits (67), Expect = 6.6
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 141 KVIVIGAGISG-LAAA--RHMEQFGIEVVVLEARE--RVG 175
K++++G G +G +AAA + G++V ++E+ E VG
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVG 40
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 29.3 bits (66), Expect = 6.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 141 KVIVIGAGISGLAAARHM---EQFGIEVVVLEARERVGG 176
KV +IG G SG+ A H+ + + + E R G
Sbjct: 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated.
Length = 372
Score = 29.2 bits (65), Expect = 6.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE--RVGGRIV 179
V+V GA ++G AAA + + G V ++E R GG+ +
Sbjct: 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAI 43
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 29.4 bits (66), Expect = 6.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
TP+P K +V VIG G + + AAR ++ G V ++ R
Sbjct: 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479
>gnl|CDD|218640 pfam05565, Sipho_Gp157, Siphovirus Gp157. This family contains
both viral and bacterial proteins which are related to
the Gp157 protein of the Streptococcus thermophilus SFi
bacteriophages. It is thought that bacteria possessing
the gene coding for this protein have an increased
resistance to the bacteriophage.
Length = 162
Score = 28.4 bits (64), Expect = 7.4
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 277 ELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVE---FQKRSTRRDMNHLCTEYD 333
EL + K +L + + + + L TL+++ + VE ++ D+ + E
Sbjct: 5 ELTGQYKELLELLEDGDLDPEALADTLESIEEEFEDKVENIAKVIKNLEADIEAIKAEIK 64
Query: 334 QLNEKKTQLQAKL 346
+L E+K ++ K+
Sbjct: 65 RLAERKKSIENKV 77
>gnl|CDD|227680 COG5391, COG5391, Phox homology (PX) domain protein [Intracellular
trafficking and secretion / General function prediction
only].
Length = 524
Score = 29.4 bits (66), Expect = 7.5
Identities = 37/165 (22%), Positives = 52/165 (31%), Gaps = 22/165 (13%)
Query: 219 HQCPLYQSSAENSDNLQ-VPKDKDDLVE---REFNRLLECTSYLSHTLD--FNYLEGKPL 272
H L + D + E L E TS H + F+ E +
Sbjct: 252 HSTLLSSFIENRKSVPTPLSLDLTSTTQELDMERKELNESTSKAIHNILSIFSLFEKILI 311
Query: 273 SLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRST-RRDMNHLCTE 331
L E + L+R+ E L L L V +E + S + T
Sbjct: 312 QLESEEES-----LTRLLESLNNLLLLVLNFSGV---FAKRLEQNQNSILNEGVVQAETL 363
Query: 332 YDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEF 376
L E TQLQ ++ + ES L + D L NLE
Sbjct: 364 RSSLKELLTQLQDEIKSRES-------LILTDSNLEKLTDQNLED 401
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.3 bits (66), Expect = 8.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLE 169
++V+G G +GLA A+ + + G+ V ++
Sbjct: 31 LVVVGGGPAGLAVAQQVSEAGLSVCCID 58
>gnl|CDD|216466 pfam01380, SIS, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars. Presumably the SIS domains
bind to the end-product of the pathway.
Length = 131
Score = 28.1 bits (63), Expect = 8.4
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 138 KSGKVIVIGAGISGLAA---ARHMEQFG-IEVVVLEARERVGGR---------IVTFKKS 184
K+ ++ VIGAG S AA A +E+ G I V V +A E G ++ +S
Sbjct: 4 KAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQS 63
Query: 185 NYVADL--GAMVVTGLGGNPINI 205
DL A ++ G I I
Sbjct: 64 GETRDLLEAAKLLKARGAKIIAI 86
>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 28.7 bits (65), Expect = 8.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 139 SGKVIVI--GAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
GKV VI G G+ G A A+ + + G +V +L+ + +V
Sbjct: 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 137 KKSGKVIVIGAGISGLAA---ARHMEQFGIEVVVLE 169
K+ ++ G G SGL A A + + G+ VV L
Sbjct: 128 AKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALS 163
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 28.8 bits (65), Expect = 9.1
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 274 LVIELQEELKPVLSRMNEILVQLDTLDQTLQNVP--IDNTTAVEFQK-----RSTRRDMN 326
L+ + + + ++ + L L +L+ + ++ +E +K RS ++
Sbjct: 165 LLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEKARQELRSLSVKIS 224
Query: 327 HLCTEYDQLNEKKTQLQAKLHAMESN 352
QL E + +LQ A+E+
Sbjct: 225 EK---RKQLEELQQELQELTIAIEAL 247
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 29.2 bits (66), Expect = 9.1
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 13/43 (30%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS 184
V+VIGAG +GL AA +EARER G R+ KS
Sbjct: 11 VVVIGAGGAGLRAA------------IEARER-GLRVAVVCKS 40
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 29.1 bits (65), Expect = 9.2
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 53 EVQYFPDISNN--PIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLV 110
E + P+ N P + + + RN ++ + NP LT+ + + +V +
Sbjct: 70 EKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAG----DVAAI 125
Query: 111 SRLHCYLERHGYINFGIFQRITP 133
R+H +LE+ G IN+ + P
Sbjct: 126 VRVHRFLEKWGLINYQVDPGTRP 148
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
Length = 668
Score = 28.9 bits (64), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLE 169
KK +V+V G GI GL A ++ G +V+V E
Sbjct: 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFE 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,306,055
Number of extensions: 3438609
Number of successful extensions: 3911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3834
Number of HSP's successfully gapped: 298
Length of query: 661
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 558
Effective length of database: 6,369,140
Effective search space: 3553980120
Effective search space used: 3553980120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)