RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6038
(661 letters)
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 622 bits (1604), Expect = 0.0
Identities = 379/702 (53%), Positives = 490/702 (69%), Gaps = 57/702 (8%)
Query: 5 EENSNGTISSVAKTEGDVYDEDIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDISNNP 64
+ + + + E P G+EGAAFQSRLP+D+MT+ E FPDI + P
Sbjct: 144 KAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHDRMTSQEAACFPDIISGP 203
Query: 65 IHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYIN 124
+ K FL IRNR LQ+WL+NPK+QLT E +Q++E+P+NS+ LV R+H YLERHG IN
Sbjct: 204 QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLIN 263
Query: 125 FGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKS 184
FGI++RI P+P KK+GKVI+IG+G+SGLAAAR ++ FG++V +LEAR+RVGGR+ TF+K
Sbjct: 264 FGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG 323
Query: 185 NYVADLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLV 244
NYVADLGAMVVTGLGGNP+ ++++Q+NMEL KI +CPLY ++ VPK+KD++V
Sbjct: 324 NYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLY-----EANGQAVPKEKDEMV 378
Query: 245 EREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQ 304
E+EFNRLLE TSYLSH LDFN L KP+SL L+ ++ + + ++ Q
Sbjct: 379 EQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQ 438
Query: 305 NVPIDNTTAV----------------------------EFQKRSTRRDMNHLCTEYDQLN 336
+ + EF +S RD+ LC EYD+L
Sbjct: 439 EELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELA 498
Query: 337 EKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDF 396
E + +L+ KL +E+NPP+DVYLS +DRQ+LDWHFANLEFANATPL++LSLKHWDQDDDF
Sbjct: 499 ETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDF 558
Query: 397 EFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTG 456
EFTGSHLTV+ GY+CVP ALAEGLD+ N++V ++ Y + G V V+ ++ +Y
Sbjct: 559 EFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKC 618
Query: 457 DRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAE 516
D VLCTLPLG+LK Q P V F PPLP+WK +++R+G+G LNKVVLCFD++FWDP+
Sbjct: 619 DAVLCTLPLGVLK---QQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 675
Query: 517 NLFGHVGSTTASRGELFLFWNLYQAPVLLALVAGEAASILEDVS--------------IF 562
NLFGHVGSTTASRGELFLFWNLY+AP+LLALVAGEAA I+E++S IF
Sbjct: 676 NLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIF 735
Query: 563 PTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDI-------PR 615
++ VPQPKETVV+RW+ADP+A+GSYS+VA G+SG+DYD + P+ I PR
Sbjct: 736 GSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPR 795
Query: 616 LFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGANYRMP 657
LFFAGEHTIRNYPATVHGA LSGL+E G I DQ LGA Y +P
Sbjct: 796 LFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLP 837
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 605 bits (1561), Expect = 0.0
Identities = 375/668 (56%), Positives = 481/668 (72%), Gaps = 57/668 (8%)
Query: 34 GLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTLE 93
G+EGAAFQSRLP+D+MT+ E FPDI + P + K FL IRNR LQ+WL+NPK+QLT E
Sbjct: 2 GVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFE 61
Query: 94 FVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLA 153
+Q++E+P+NS+ LV R+H YLERHG INFGI++RI P+P KK+GKVI+IG+G+SGLA
Sbjct: 62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLA 121
Query: 154 AARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINME 213
AAR ++ FG++V +LEAR+RVGGR+ TF+K NYVADLGAMVVTGLGGNP+ ++++Q+NME
Sbjct: 122 AARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME 181
Query: 214 LLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLS 273
L KI +CPLY ++ VPK+KD++VE+EFNRLLE TSYLSH LDFN L KP+S
Sbjct: 182 LAKIKQKCPLY-----EANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVS 236
Query: 274 LVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAV------------------- 314
L L+ ++ + + ++ Q + +
Sbjct: 237 LGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASE 296
Query: 315 ---------EFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQ 365
EF +S RD+ LC EYD+L E + +L+ KL +E+NPP+DVYLS +DRQ
Sbjct: 297 VKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQ 356
Query: 366 LLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFN 425
+LDWHFANLEFANATPL++LSLKHWDQDDDFEFTGSHLTV+ GY+CVP ALAEGLD+ N
Sbjct: 357 ILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLN 416
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
++V ++ Y + G V V+ ++ +Y D VLCTLPLG+LK Q P V F PPLP
Sbjct: 417 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK---QQPPAVQFVPPLP 473
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQAPVLL 545
+WK +++R+G+G LNKVVLCFD++FWDP+ NLFGHVGSTTASRGELFLFWNLY+AP+LL
Sbjct: 474 EWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL 533
Query: 546 ALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV 591
ALVAGEAA I+E++S IF ++ VPQPKETVV+RW+ADP+A+GSYS+V
Sbjct: 534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYV 593
Query: 592 AVGASGSDYDTLGLPVKDDKDI-------PRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
A G+SG+DYD + P+ I PRLFFAGEHTIRNYPATVHGA LSGL+E G
Sbjct: 594 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 653
Query: 645 IVDQILGA 652
I DQ LGA
Sbjct: 654 IADQFLGA 661
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 320 bits (821), Expect = e-102
Identities = 95/540 (17%), Positives = 176/540 (32%), Gaps = 116/540 (21%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN-YVADLGAMVVT 196
V+V+G GISG+AAA+ + G+ VVVLEAR+RVGGR T + DLG V
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62
Query: 197 GLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTS 256
N I LA+++ +E K+ L
Sbjct: 63 P-TQNRILRLAKELGLETYKVNEVERL--------------------------------- 88
Query: 257 YLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEF 316
++++GK P+ + + T+D + +P D
Sbjct: 89 -------IHHVKGKSYPFRGPFPPVWNPITYLDHNNFWR--TMDDMGREIPSDAPWKAPL 139
Query: 317 QKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEF 376
+ E+D + ++ L + A +QL
Sbjct: 140 AE------------EWDNMT-----MKELLDKLCWTESA--------KQLATLFVNLCVT 174
Query: 377 ANATPLASLSLKHW-------DQDDDFEFTGSHLTVKKGYACVPTALAEGL--DVHFNSS 427
A +++L + + G G V + + L V
Sbjct: 175 AETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERP 234
Query: 428 VTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDW 487
V I + V V+T++ +Y V+ +P + + FNPPLP
Sbjct: 235 VIYIDQTRENVLVETLN------HEMYEAKYVISAIPPTLGM-------KIHFNPPLPMM 281
Query: 488 KVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLY---QAPVL 544
+ + I R+ G + K ++ + + FW ++ G + + + +
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFW-RKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAI 340
Query: 545 LALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYS- 589
+ + A L ++ + + +P W + ++ G Y+
Sbjct: 341 MGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTT 400
Query: 590 FVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649
+ G L PV R++FAG T ++ + GA +G + I+ +
Sbjct: 401 YFPPGILTQYGRVLRQPV------DRIYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 297 bits (761), Expect = 5e-94
Identities = 93/527 (17%), Positives = 176/527 (33%), Gaps = 100/527 (18%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGG 200
V ++GAG SGLAAA + + G+ V V+EAR+RVGGR T V ++G V+
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP-DQ 65
Query: 201 NPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSYLSH 260
+ L ++ ++ + ++ + Y+S
Sbjct: 66 TALISLLDELGLKT---------------------FERYREG-----------ESVYISS 93
Query: 261 TLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRS 320
+ G ++E+ ++ M+++ Q+ P + A + S
Sbjct: 94 AGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIG------AEEPWAHPLARDLDTVS 147
Query: 321 TRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEFANAT 380
++ + + E + + + PA + A L A+A
Sbjct: 148 FKQWLINQS----DDAEARDNIGLFIAGGMLTKPAHSF---------SALQAVLMAASAG 194
Query: 381 PLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGV 438
+ L + + D G V +AE L DV N+ V + +N G
Sbjct: 195 SFSHLVDEDFILDKRV---------IGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGA 245
Query: 439 TVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYG 498
TV + RV+ +P + + ++PPLP + + + G
Sbjct: 246 TVLA------DGDIRVEASRVILAVPPNLYS-------RISYDPPLPRRQHQMHQHQSLG 292
Query: 499 LLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLY-QAPVLLALVAGEAASILE 557
L+ KV ++ FW + L G + E++ N L+A V+ E A +
Sbjct: 293 LVIKVHAVYETPFW-REDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMF 351
Query: 558 DVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSYSFV-AVGASGSDYDT 602
++S +P + W ++ + +G Y+ +G
Sbjct: 352 ELSAEERKATILASLARYLG-PKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGAD 410
Query: 603 LGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649
PV + F+ V GA G + I+ +
Sbjct: 411 SRTPV------GPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARS 451
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 285 bits (732), Expect = 5e-90
Identities = 77/529 (14%), Positives = 145/529 (27%), Gaps = 119/529 (22%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN---YVADLGAMVVTGL 198
IV+G G SGL AAR + G +V++LE ER+GGR + + N ++G +
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 199 GGNPINILARQINMELLKIGHQCPLYQ--SSAENSDNLQVPKDKDDLVEREFNRLLECTS 256
+ + + +P + VE LL
Sbjct: 64 HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAH 123
Query: 257 YLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEF 316
+ + + L + L++ + + + +
Sbjct: 124 RIDLEKGLENQDLEDLDI-----------------------PLNEYVDKLDLPPVS---- 156
Query: 317 QKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLEF 376
R L A M P + L
Sbjct: 157 ------RQF----------------LLAWAWNMLGQPADQA--------------SALWM 180
Query: 377 ANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL-DVHFNSSVTEIHYNS 435
S+ D F+ G A + A+++ + ++ + VT I +
Sbjct: 181 LQLVAAHHYSILGVVLSLDEVFSN-------GSADLVDAMSQEIPEIRLQTVVTGIDQSG 233
Query: 436 KGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRL 495
V V D + V+ P+ + ++F P LP+ + I
Sbjct: 234 DVVNVTVKDGHA------FQAHSVIVATPMNTW-------RRIVFTPALPERRRSVIEEG 280
Query: 496 GYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ----APVLLALVAGE 551
G K+++ G G ++ + +L+A
Sbjct: 281 HGGQGLKILIHVRGAEA----------GIECVGDGIFPTLYDYCEVSESERLLVAFTDSG 330
Query: 552 AASILEDVSI-------FPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLG 604
+ + ++ P + W ADP +G + VG + LG
Sbjct: 331 SFDPTDIGAVKDAVLYYLPE---VEVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELG 387
Query: 605 LPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGAN 653
P R+ F G +P + GA + I+ +
Sbjct: 388 EPA------GRIHFVGSDVSLEFPGYIEGALETAECAVNAILHSHHHHH 430
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 282 bits (724), Expect = 3e-88
Identities = 89/547 (16%), Positives = 156/547 (28%), Gaps = 112/547 (20%)
Query: 129 QRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVA 188
I VIVIG G GL A R + G + ++LEAR+R+GGR + Y
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPY 88
Query: 189 DLGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREF 248
++G V + + R
Sbjct: 89 EMGGTWVHWHQSHVWREITRYKMH------------------------------------ 112
Query: 249 NRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLD-TLDQTLQNVP 307
L + S ++ L P + E +L +D T +T+ P
Sbjct: 113 -NALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFP 171
Query: 308 IDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLL 367
D EF+K YD+++ ++ + LS+ +R L
Sbjct: 172 HDMFYVPEFRK-------------YDEMS-----YSERIDQIRDE------LSLNERSSL 207
Query: 368 DWHFANLEFANATPLASLSLKHWDQDDDFEFTGSH-----LTVKKGYACVPTALAEGL-- 420
+ + HW + + G K G + E
Sbjct: 208 EAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAG 267
Query: 421 ----DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPK 476
F V + V D + + RV+CT+PL +L
Sbjct: 268 TGRLGYVFGCPVRSVVNERDAARVTARDGRE------FVAKRVVCTIPLNVLS------- 314
Query: 477 DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFW 536
+ F+P L ++ +++ + KV D + G +
Sbjct: 315 TIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDM---RSWTGIAYPF---NKLCYAIG 368
Query: 537 NLYQAPVLLALVA-GEAASILEDVS-----------IFPTNTVPQPKETVVTRWKADPFA 584
+ LV G +A+ ++ + P K V W D FA
Sbjct: 369 DGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPG--TFGVKRLVFHNWVKDEFA 426
Query: 585 KGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGH 644
KG++ F G L + FA + + + GA G +
Sbjct: 427 KGAWFFSRPGMVSECLQGLREKH------GGVVFANSDWALGWRSFIDGAIEEGTRAARV 480
Query: 645 IVDQILG 651
+++++
Sbjct: 481 VLEELGT 487
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 279 bits (715), Expect = 5e-87
Identities = 88/320 (27%), Positives = 139/320 (43%), Gaps = 54/320 (16%)
Query: 364 RQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSH---LTVKKGYACVPTALAEGL 420
++D++ + EFA + SL++ F G + ++GY V LA
Sbjct: 159 DMVVDYYKFDYEFAEPPRV--TSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQY 216
Query: 421 -------------DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGI 467
+ N V EI Y+ GVTVKT ++ +VY+ D V+ + LG+
Sbjct: 217 LKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKT------EDNSVYSADYVMVSASLGV 270
Query: 468 LKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTA 527
L++ + F P LP WKV++I + + K+ L F + FW P ++
Sbjct: 271 LQS-----DLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFW-PEGKGREFFLYASS 324
Query: 528 SRGELFLFWNLY----QAPVLLALVAGEAASILEDVS--------------IFPTNTVPQ 569
RG ++ A VLL V E + +E S +FP VP
Sbjct: 325 RRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPD 384
Query: 570 PKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPA 629
+ +V RW +D F KG++S VG + +YD L PV R++F GEHT +Y
Sbjct: 385 ATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPV------GRVYFTGEHTSEHYNG 438
Query: 630 TVHGAFLSGLKEGGHIVDQI 649
VHGA+LSG+ +++
Sbjct: 439 YVHGAYLSGIDSAEILINCA 458
Score = 114 bits (286), Expect = 4e-27
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG 199
+VIV+GAG+SG++AA+ + + GI ++++LEA + +GGR+ + +LGA V G+
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 65
Query: 200 GNPINILARQINM--ELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECTSY 257
G +N + +N +L + D +D + + E
Sbjct: 66 GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 125
Query: 258 LSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQL 296
LS TL + + + + L E + +++V
Sbjct: 126 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDY 164
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 276 bits (706), Expect = 1e-85
Identities = 94/549 (17%), Positives = 188/549 (34%), Gaps = 102/549 (18%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
VK S V+V+G G +GL +A +++ G +V VLEAR R GGR+ T + + DL
Sbjct: 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQ 67
Query: 196 TGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLLECT 255
N+ +I + L V + F +
Sbjct: 68 KCTFSEGH-----FYNVGATRIPQSHITL----DYCRELGVEI-------QGFGN--QNA 109
Query: 256 SYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVE 315
+ + L G+ ++ + M+E+L
Sbjct: 110 NTFVNYQSDTSLSGQSVTY----RAAKADTFGYMSELL---------------------- 143
Query: 316 FQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHFANLE 375
+K + + ++ + + D K L L YL R A L
Sbjct: 144 -KKATDQGALDQVLSRED-----KDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLN 197
Query: 376 FANATPLASLS-------LKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL---DVHFN 425
F ++ +++ D ++ T G + A + + ++ F
Sbjct: 198 FGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFG 257
Query: 426 SSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLP 485
+ VT + S+GVTV+ G ++ T D +CT+P ++ LP
Sbjct: 258 AEVTSMKNVSEGVTVEYTA---GGSKKSITADYAICTIPPHLVGR---------LQNNLP 305
Query: 486 DWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ---AP 542
+ +++ K+ + + + +W+ + ++G +T ++ ++ Y
Sbjct: 306 GDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGV 365
Query: 543 VLLALVAGEAASILEDVS--------------IFPTNTVPQPKETVVTRWKADPFAKGSY 588
V+ +G+ E ++ I + W+ +++ ++
Sbjct: 366 VVAYYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAW 425
Query: 589 SFVA------VGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEG 642
+ A GA+ +Y+ L PV +++FAG+H N A HGA S
Sbjct: 426 ANWAGSGGSHGGAATPEYEKLLEPV------DKIYFAGDHL-SNAIAWQHGALTSARDVV 478
Query: 643 GHIVDQILG 651
HI +++
Sbjct: 479 THIHERVAQ 487
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 264 bits (677), Expect = 3e-81
Identities = 98/551 (17%), Positives = 179/551 (32%), Gaps = 113/551 (20%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI--VTFKKSNYVADLGA 192
V+++GAG++GL+AA + G +V VLEA ER GGR+ +++ + A+LG
Sbjct: 29 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGP 88
Query: 193 MVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFNRLL 252
M + + R+ ++ L Q + ++ + K V++
Sbjct: 89 MRLPE-KHRIVREYIRKFDLRL------NEFSQENDNAWYFIKNIRKKVGEVKK------ 135
Query: 253 ECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQ-LDTLDQTLQNVPIDNT 311
+ L ++ E K E L + ++ L +T + ++
Sbjct: 136 ---------------DPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILN-- 178
Query: 312 TAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQLLDWHF 371
++ ST+ + + L + D+ +
Sbjct: 179 ---KYDTYSTKEYLIK---------------EGDLSPGAVDMIGDLLNEDSGYYVSFIES 220
Query: 372 ANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLD--VHFNSSVT 429
D F + + G +PTA+ + VHFN+ V
Sbjct: 221 -----------------LKHDDI-FAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVI 262
Query: 430 EIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKV 489
+I N + VTV + T D V+ + + + FNPPL K
Sbjct: 263 KIQQNDQKVTVVYETL--SKETPSVTADYVIVCTTSRAV-------RLIKFNPPLLPKKA 313
Query: 490 KSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQ---APVLLA 546
++R + Y K+ L FW+ G STT + N V++A
Sbjct: 314 HALRSVHYRSGTKIFLTCTTKFWEDDGIHGGK--STTDLPSRFIYYPNHNFTNGVGVIIA 371
Query: 547 LVAGEAASILEDVS--------------IFPTNT---VPQPKETVVTRWKADPFAKGSYS 589
G+ A+ + + I +V+ +W D +A G +
Sbjct: 372 YGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGIT 431
Query: 590 FVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649
D L R++FAGE+T + + SGL+ +
Sbjct: 432 TFTPYQFQHFSDPLTASQ------GRIYFAGEYTAQ-AHGWIDSTIKSGLRA----ARDV 480
Query: 650 LGANYRMPGGK 660
A+ G
Sbjct: 481 NLASENPSGIH 491
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 228 bits (581), Expect = 3e-67
Identities = 73/373 (19%), Positives = 125/373 (33%), Gaps = 91/373 (24%)
Query: 358 YLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALA 417
+L+ + L LE + LS +D F G + Y V +A
Sbjct: 155 FLTNDQIRYLPQLCRYLELWHGLDWKLLSA----KDTYFGHQGRNA-FALNYDSVVQRIA 209
Query: 418 EGLD---VHFNSSVTEIHY-NSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQ 473
+ + + V I SK VTV ++ TVY D V+ T+P +L +Q
Sbjct: 210 QSFPQNWLKLSCEVKSITREPSKNVTVNC------EDGTVYNADYVIITVPQSVLNLSVQ 263
Query: 474 PPK----DVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASR 529
P K + F PPL + ++ +G L KV+ F++ W + + ++T
Sbjct: 264 PEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEF 323
Query: 530 GEL-------------------------------FLFWNLYQA---PVLLALVAGEAASI 555
E+ F NL ++ + L+ +
Sbjct: 324 VEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNH 383
Query: 556 LEDVS----------------------------------IFPTNTVPQPKETVVTRWKAD 581
+E + P + +V+ W D
Sbjct: 384 IESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRD 443
Query: 582 PFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKE 641
P+++G+YS G D +D R+ FAGEHTI + +GA+ SG +E
Sbjct: 444 PYSRGAYSACFPGDDPVDMVVAMSNGQD----SRIRFAGEHTIMDGAGCAYGAWESGRRE 499
Query: 642 GGHIVDQILGANY 654
I D + ++
Sbjct: 500 ATRISDLLKLEHH 512
Score = 109 bits (272), Expect = 3e-25
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFK-KSNYVAD 189
T P KK KVI+IGAGI+GL AA + Q GI + +VLEAR+RVGGR+ T D
Sbjct: 3 TVSPAKK--KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYD 60
Query: 190 LGAMVVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVEREFN 249
+GA NP+ + Q+++ + + + +V DK+ L+E N
Sbjct: 61 IGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDN 120
Query: 250 RLLECTSYLSHTLDFNYLE 268
+ + H
Sbjct: 121 EMSKFAELEFHQHLGVSDC 139
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 111
Score = 90.7 bits (225), Expect = 4e-22
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 19 EGDVYDEDIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDI-SNNPIHSHKTFLHIRNR 77
G E+ E PE + + + + E Q P+ + + +L IRN
Sbjct: 3 SGSSGHEEEELKPPE------QEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNY 56
Query: 78 ILQMWLENPKVQLTLEFVMQKIESPFNSEVQLVSRLHCYLERHGYINFGIFQR 130
IL W L V + +V + R+H YLE G INFG Q
Sbjct: 57 ILDQWEICKPKYLNKTSVRPGL--KNCGDVNCIGRIHTYLELIGAINFGCEQA 107
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 94.3 bits (233), Expect = 7e-21
Identities = 53/358 (14%), Positives = 103/358 (28%), Gaps = 48/358 (13%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR-ERVGGRIVTFKKS-------- 184
P +++++GAGI+GL A + + G +V +LEA RVGGRI TF
Sbjct: 39 NPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFA 98
Query: 185 --NYVADLGAM-----------VVTGLGGNPINILARQINMELLKIGHQCPLYQSSAENS 231
A+ GAM ++ LG I+ + P +
Sbjct: 99 DPAQYAEAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKD 158
Query: 232 DNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSRMNE 291
+ R + P S+ +++
Sbjct: 159 GKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSD 218
Query: 292 ILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMES 351
++ Q + +V D+ T V + + ++D + +
Sbjct: 219 MVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMG--------RFLRE 270
Query: 352 NPPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYAC 411
+ ++ +E + + D + ++ ++ G
Sbjct: 271 YAEF-------SDEAVEA-IGTIENMTSRLHLAFFHSFLG-RSDIDPRATYWEIEGGSRM 321
Query: 412 VPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL-CTLPLG 466
+P LA+ L + + + Y G T G V T+P G
Sbjct: 322 LPETLAKDLRDQIVMGQRMVRLEYYDPGRDG------HHGELTGPGGPAVAIQTVPEG 373
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A
{Saccharomyces cerevisiae} SCOP: a.4.1.18
Length = 104
Score = 86.4 bits (214), Expect = 1e-20
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 46 YDKMTTNEVQYFPDISN--NPIHSHKTFLHIRNRILQMWLENPKVQLTLEFVMQKIESPF 103
+K+ + EVQ P+ P + + ++ RN ++ + NP ++ + +
Sbjct: 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNV---- 77
Query: 104 NSEVQLVSRLHCYLERHGYINFGIFQR 130
+ + + RLH +L + G IN+ + +
Sbjct: 78 SGDAAALFRLHKFLTKWGLINYQVDSK 104
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 79.2 bits (195), Expect = 9e-18
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 11/108 (10%)
Query: 453 VYTGDRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFW 512
+TGD + T+P L+ V PP K +++ Y KV+L F + +W
Sbjct: 5 TWTGDLAIVTIPFSSLR-------FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWW 57
Query: 513 DPAENLFGHVGSTTA-SRGELFLFWNLYQ---APVLLALVAGEAASIL 556
+ E + A + + W A L V +L
Sbjct: 58 EFTEADWKRELDAIAPGLYDYYQQWGEDDAEAALALPQSVRNLPTGLL 105
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 74.9 bits (184), Expect = 8e-16
Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 26/159 (16%)
Query: 514 PAENLFGHVGST-TASRGELFLFWNLYQ---APVLLALVAGEAASILEDVS--------- 560
PA N +G +T +R + + VL A + A+ +
Sbjct: 5 PATNAYGGGSTTDNPNRFMYYPSHPVPGTQGGVVLAAYSWSDDAARWDSFDDAERYGYAL 64
Query: 561 -----IFPTNT-VPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIP 614
+ V W DP+A G + + + + P
Sbjct: 65 ENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPE------G 118
Query: 615 RLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGAN 653
++FAGEH A + GA + ++ + + +G
Sbjct: 119 PVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAPVGDT 156
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 78.9 bits (194), Expect = 1e-15
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
P V V+G GISGLA A H+ G + V+LE+ R+GG + T + Y+ + G
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGP 69
Score = 39.6 bits (92), Expect = 0.003
Identities = 37/200 (18%), Positives = 57/200 (28%), Gaps = 39/200 (19%)
Query: 404 TVKKGYACVPTALAE--GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLC 461
T G + ALA G H + V + G + + + +V+
Sbjct: 232 TFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEE---HGRRAELSVAQVVL 288
Query: 462 TLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGH 521
P + PL D + + Y + V L FD PA + FG
Sbjct: 289 AAPAHATAKLL---------RPLDDALAALVAGIAYAPIAVVHLGFDAGTL-PAPDGFGF 338
Query: 522 VGSTTASRGELFLFWNLYQAP-------VLLALVAGEA--------------ASILEDVS 560
+ R L P VL + + G A A E++
Sbjct: 339 LVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELK 398
Query: 561 -IFPTNTVPQPKETVVTRWK 579
+ +P T V RW
Sbjct: 399 ALAGVT--ARPSFTRVFRWP 416
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 78.4 bits (193), Expect = 1e-15
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
++ +IGAG +GLAA ++EQ G + +LE + VGG+ + ++GA++
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMG 63
Score = 41.8 bits (98), Expect = 5e-04
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 398 FTGSHLTVKKGYACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYT 455
G T G + L L N +T I V + T +
Sbjct: 194 AKGDLWTWADGTQAMFEHLNATLEHPAERNVDITRITREDGKVHIHT-------TDWDRE 246
Query: 456 GDRVLCTLPLGILKACIQPPKD 477
D ++ T+PL D
Sbjct: 247 SDVLVLTVPLEKFLDYSDADDD 268
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 78.6 bits (193), Expect = 2e-15
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
+V VIGAG+SGLAAA ++ G+ V V EA + GG++ + + + D GA
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGA 66
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 74.3 bits (182), Expect = 4e-14
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
S +++++G GI+GLAAA + E+ + + +LEA ER+GG++ T+++ + + G
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGP 59
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 73.5 bits (180), Expect = 7e-14
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 141 KVIVIGAGISGLAAARHMEQF------GIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
V++IG GI+GLAAA +ME+ +E+ ++EA RVGG+I T KK Y+ + G
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGP 64
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 72.8 bits (179), Expect = 9e-14
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG- 199
+ +V+GAG+ GL A + + G E++VLE +GGR + GA+ + G
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGE 61
Query: 200 GNPINILARQINMEL 214
P+ L R + ++
Sbjct: 62 DGPLAHLLRILGAKV 76
Score = 42.4 bits (100), Expect = 4e-04
Identities = 35/315 (11%), Positives = 78/315 (24%), Gaps = 75/315 (23%)
Query: 364 RQLLDWHFANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL--- 420
+L+ + + + L +L L + ++ G V L +
Sbjct: 145 LSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGL--IRGGCKAVIDELERIIMEN 202
Query: 421 --DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDV 478
+ V EI+ K V + + Y+ D + + + +
Sbjct: 203 KGKILTRKEVVEINIEEKKVYTR--------DNEEYSFDVAISNVGVRET-------VKL 247
Query: 479 LFNPPLPDWKVKSIRRLGYGLLNKVVLCFDK-------IFWDPAENLFGHVGSTTASRGE 531
+ +K + + K L I + P + G +A
Sbjct: 248 IGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFTPGLMING-FNEPSALDKS 306
Query: 532 LFLFWNLYQAP------VLLALVAG-----EAASILEDV-SIFPTNTVPQPKETVVTRWK 579
L A + + E++ IFP +
Sbjct: 307 L--------AREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFPEGEPLLA-QVYRDGN- 356
Query: 580 ADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGL 639
V +G + P + + G+ V G L +
Sbjct: 357 ----------PVNRTRAGLHIEW---P------LNEVLVVGDGYRPPGGIEVDGIALGVM 397
Query: 640 KEGGHIVDQILGANY 654
K ++++ ++
Sbjct: 398 K----ALEKLNLGSF 408
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 71.6 bits (174), Expect = 1e-13
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVT 196
+ +IG GI+GL+AA+ + G +V + + GGR+ + + D+GA T
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59
Score = 35.4 bits (80), Expect = 0.049
Identities = 32/253 (12%), Positives = 70/253 (27%), Gaps = 32/253 (12%)
Query: 402 HLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLC 461
K G + + A+ + V F+ +TE+ + + + V+
Sbjct: 102 RWVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWN-----LLDAEGQNHGPFSHVII 156
Query: 462 TLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGH 521
P + + K+ + + F + +
Sbjct: 157 ATPAPQASTLL--AAAPKLASVVAGVKMDPTWAVALAFETPLQTPMQGCFVQDSPLDWLA 214
Query: 522 VGSTTASRGELFLFWNL-----YQAPVLLALVAGEAASILEDVSIFPTNTVPQPKETVVT 576
+ R + W L + L A + + T+P P ++
Sbjct: 215 RNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAH 274
Query: 577 RWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFL 636
RW Y+ A D D+ ++ G+ + V GA+L
Sbjct: 275 RWL--------YARPA--------GAHEWGALSDADL-GIYVCGDWCLSGR---VEGAWL 314
Query: 637 SGLKEGGHIVDQI 649
SG + +++ +
Sbjct: 315 SGQEAARRLLEHL 327
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 72.0 bits (176), Expect = 2e-13
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARERVGGRIVTFKKSN-YVADLGA--MVV 195
V+V+G GISGLAA+ H+ + +VV++E+ ER+GG I + + N + +LG +
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63
Query: 196 TGLGGNPINILARQINM--ELLKIGHQCPLYQSSAENSDN 233
G G +L ++ + E+L + P Q+
Sbjct: 64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGG 103
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 68.7 bits (166), Expect = 3e-12
Identities = 80/636 (12%), Positives = 156/636 (24%), Gaps = 125/636 (19%)
Query: 137 KKSGKVIVIGAGISGLAAA--------RHMEQFGIEVVVLEARERVGGRIVTFKKSNYVA 188
+ ++ ++G G G+AA GI+V + EA K+ V
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVR 113
Query: 189 DLGAMVVTGLGGNPINILARQINMEL----LKIGHQCPLYQSSAENSDNLQVPKDKDDL- 243
L A V+ + + + E+ + +SA D + +
Sbjct: 114 GLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGK 173
Query: 244 VEREFNRLLECTSYLSHTL-DFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDTLDQT 302
V EF Y+ D+ + L ++ + L N + + +D
Sbjct: 174 VPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVGNPQGENVAMYPIANVDPA 233
Query: 303 LQNVPIDNTTAV-EFQKRSTRRDMNHLCTEYDQ--LNEKKTQLQAKLHAMESNPPADVYL 359
++ T + +R + +YD L ++ + PP D L
Sbjct: 234 KIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVAFEKGTLPPVDGVL 293
Query: 360 SVKDRQLLDW-HFANLEFA--------NATPLASLSLKHWDQDDDFEF--TGSHLTVKKG 408
V + F F N + + + L WD +++ T + ++
Sbjct: 294 DVDESISYYVELFGRFGFGTGGFKPLYNISLVEMMRLILWDYSNEYTLPVTENVEFIRNL 353
Query: 409 YACVPTALAEGL--DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTLPLG 466
+ A L V H + + + + D V+ +P
Sbjct: 354 FLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHD 413
Query: 467 -----------------------------ILKACIQPPKDVLFNPPLPDWKVKSIRRLGY 497
P +P V +I +L
Sbjct: 414 QLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHM 473
Query: 498 GLLNKVVLCFDKIFWDPAE------NLFGHVGSTTASRGELFLFWNLYQAP------VLL 545
+KV D V S + + + + LL
Sbjct: 474 ARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSDSGLAASYVVPSPIVEDGQAPEYSSLL 533
Query: 546 A-------------------------------LVAGEAASILEDVSIFPTNTV------- 567
A + V +
Sbjct: 534 ASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNAQPWWFYQ 593
Query: 568 ----PQPKETVVTRWKADPFAKGSYSFVAVG------ASGSDYDTLGLPVKDDKDIPRLF 617
+ + V W + A G + G + D+ R F
Sbjct: 594 LLAEARTADRFVFDWTTNKTA-GGFKLDMTGDHHQSNLCFRYHTHALAASLDN----RFF 648
Query: 618 FAGEHTIRNYPATVHGAFLSGLKEGGHIVDQILGAN 653
A + + GAF+S L ++ + +
Sbjct: 649 IASDSYSH-LGGWLEGAFMSALNAVAGLIVRANRGD 683
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 67.4 bits (165), Expect = 5e-12
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG- 199
K +VIGAG+ GL +A + + G EV V E GGR + GA + G
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGP 61
Query: 200 GNPINILARQINMEL 214
G P+ +++ +
Sbjct: 62 GGPLACFLKEVEASV 76
Score = 30.4 bits (69), Expect = 2.0
Identities = 39/315 (12%), Positives = 80/315 (25%), Gaps = 68/315 (21%)
Query: 364 RQLLDWHFANLEFANATPLASLS----LKHWDQDDDFEFTGSHLTVKKGYACVPTALAEG 419
+ D + + +++ + + G + AL
Sbjct: 152 IKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGI------PEGGCKGIIDALETV 205
Query: 420 L-----DVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQ 473
+ +H V++I + + ++ ++ D V+ L
Sbjct: 206 ISANGGKIHTGQEVSKILIENGKAAGIIA-------DDRIHDADLVISNLGHAATAVLCS 258
Query: 474 PPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDK--------IFWDPAENLFG-HVGS 524
K + L K+ L D+ + + G + +
Sbjct: 259 EALS----KEADAAYFKMVGTLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVT 314
Query: 525 TT----ASRGELFLFWNLYQAPVLLALVAGEAASILEDVSIFPTNTVPQPKETVVTRWKA 580
A G+ + Y AP + + E LED+ P + V+
Sbjct: 315 QADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLK----EIFPGKRYEVLLIQSY 370
Query: 581 DPFAKGSYSFVAVGASGSDYDTLGLPVKDDKDIPRLFFAGEHTIRNYPATVH---GAFLS 637
V ASG + L+ G G +
Sbjct: 371 -----HDEWPVNRAASG-----TDPGNE--TPFSGLYVVG--------DGAKGKGGIEVE 410
Query: 638 GLKEGGHIV-DQILG 651
G+ G V +++LG
Sbjct: 411 GVALGVMSVMEKVLG 425
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 60.7 bits (146), Expect = 8e-10
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVTFKKSN-YVADLGA 192
K+++IGAG +GL AA + + G + + E + GG +F N + DLG
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGG 64
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 59.1 bits (142), Expect = 2e-09
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQF-GIEVVVLEARERVGGRIVTFKKSN-YVADLGA 192
V+VIGAG +GL AA+ + Q G +++++ E GG T ++ D+G
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGG 65
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 58.2 bits (141), Expect = 3e-09
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG G SGL+A + + G+ V+L+A GG
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 55.1 bits (133), Expect = 3e-08
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE-----RVGGRI 178
G+ R + + + V +IG G GL A+ ++Q GI+V V E GG +
Sbjct: 13 GLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTL 70
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 54.7 bits (131), Expect = 5e-08
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY 186
KS K++++GAG SG R + + G +V +++ R+ +GG + S
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSET 50
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 54.3 bits (130), Expect = 5e-08
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY-VADLGA 192
I++G+G+ G A +++ +V+V+E R +GG T + GA
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGA 55
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 54.0 bits (130), Expect = 7e-08
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
V +IGAG +G+ A ++ FGI V++ + VG
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSF 43
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 53.8 bits (129), Expect = 9e-08
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 141 KVIVIGAGISGLAAARHM--EQFGIEVVVLEARERVGG 176
K+ +IGAG SGL A+ + E+ +V + E R GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 53.6 bits (128), Expect = 1e-07
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSN--YVADLGA 192
+++GAG +G A + G V++++ R +GG + G
Sbjct: 31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGP 84
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 52.6 bits (127), Expect = 3e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+VIGAG++G+ A + Q G++V+ +EA E VGG
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 52.1 bits (126), Expect = 3e-07
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
IVIGAG+ GLA AR + G EV+V EA E +G
Sbjct: 7 CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 52.6 bits (127), Expect = 3e-07
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ + V+V+GAG SGL A + + G V V+E VGG
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 51.8 bits (125), Expect = 5e-07
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAGI+GL A G+ V EA VGG
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 50.9 bits (120), Expect = 6e-07
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 141 KVIVIGAGISGLAAARHMEQFG---IEVVVLEARERVGGRIVTF---KKSNYVADLGAMV 194
+V+++GAG++G A + + + + V + + GGR+ T ADLGA
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62
Query: 195 V 195
+
Sbjct: 63 I 63
Score = 39.7 bits (91), Expect = 0.002
Identities = 28/168 (16%), Positives = 47/168 (27%), Gaps = 28/168 (16%)
Query: 482 PPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAENLFGHVGSTTASRGELFLFWNLYQA 541
D + V + K + +E V TT G +L ++
Sbjct: 203 GTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIED- 261
Query: 542 PVLLALVAGEAASILEDVSIFPTNTVPQPKETVVTRWKADPFAKGSYSFVAVGASGSDYD 601
+ LV + +IL + PQP T +W+ +S V A+
Sbjct: 262 --VQELVFQQLENILPGL--------PQPIATKCQKWR--------HSQVTNAAANCPGQ 303
Query: 602 TLGLPVKDDKDIPRLFFAGEHTIRNYPATVHGAFLSGLKEGGHIVDQI 649
P L G+ + G S L + + I
Sbjct: 304 MT------LHHKPFLACGGDGFT---QSNFDGCITSALCVLEALKNYI 342
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 51.1 bits (123), Expect = 7e-07
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
+ K IVIGAGI GL+AA ++Q GI+ V EA + +
Sbjct: 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 50.8 bits (122), Expect = 9e-07
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
+ V G G +GL AA ++Q G +V + E +
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-06
Identities = 69/424 (16%), Positives = 122/424 (28%), Gaps = 130/424 (30%)
Query: 21 DVY-DE--DIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRNR 77
D Y +E D+ Y L G + + ++ + + K F N
Sbjct: 167 DDYFEELRDL-YQTYHVLVGDLIKF----------SAETLSELIRTTLDAEKVFTQGLN- 214
Query: 78 ILQMWLENPKVQLTLEFVMQKIES-PFNSEVQLVSRLHCYL---ERHGYINFGIFQRITP 133
+ WLENP ++++ S P +QL Y+ + G+ G +
Sbjct: 215 -ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA----HYVVTAKLLGF-TPGELRSYL- 267
Query: 134 IPVKKSGKVIVIGAGI---SGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL 190
G G+ +A E F + +
Sbjct: 268 -----KG-ATGHSQGLVTAVAIAETDSWESF---------------------FVSVRKAI 300
Query: 191 GAMVVTGLGGN---PINILARQINMELLKIGHQCPLYQSSAENSDNLQVPKDKDDLVERE 247
+ G+ P L I + L+ P S N QV D V +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV----QDYVNK- 355
Query: 248 FNRLLECTSYLSHTLDFN-----YLEGKPLSL---VIELQEELKPVLSRMNEILVQLDTL 299
N L + +L N + G P SL + L++ P L
Sbjct: 356 TNSHLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAP------------SGL 402
Query: 300 DQTLQNVPIDNTTAVEFQKRSTRRDMN--------HLCTEY-----DQLNEKKTQLQAKL 346
DQ+ +P F +R + H + D +N+ +
Sbjct: 403 DQS--RIP--------FSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSF 450
Query: 347 HAMESNPPADVYLSV--KDRQLLDWHFANLEFANATP-----LASLSLKHWDQDDDFEFT 399
+A + P VY + D ++L + + + L + W+ F+ T
Sbjct: 451 NAKDIQIP--VYDTFDGSDLRVLS--------GSISERIVDCIIRLPV-KWETTTQFKAT 499
Query: 400 GSHL 403
H+
Sbjct: 500 --HI 501
Score = 44.7 bits (105), Expect = 1e-04
Identities = 60/331 (18%), Positives = 95/331 (28%), Gaps = 124/331 (37%)
Query: 13 SSVAKTEGDVYDE--------------DIEYHIPEGLE----GAAFQS-RLPYDKMTTNE 53
S A+ DV++ DI + P L G + R Y M
Sbjct: 1639 SKAAQ---DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI--- 1692
Query: 54 VQYFPDISNNPIHSHKTFLHIRNRILQMWLENPKVQLTL-EFVMQKIESP--FNSEVQLV 110
F I + + + K F I + K L+ +F Q P L+
Sbjct: 1693 ---FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-Q----PALT-----LM 1739
Query: 111 SR-LHCYLERHGYINFG-IFQRITPIPVKKSGKVIVIGAGIS-G----LAA-ARHMEQF- 161
+ L+ G I F AG S G LA+ A M
Sbjct: 1740 EKAAFEDLKSKGLIPADATF------------------AGHSLGEYAALASLADVMS-IE 1780
Query: 162 -GIEVVVLEARERVGGRIVTF-------KKSNY--VADLGAMVVTGLGGNPINILARQIN 211
+EVV R G + +SNY +A V + + ++
Sbjct: 1781 SLVEVV----FYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 212 MELLKIGHQCPLYQSSAE----NSDNLQV-----PKDKDDLVEREFNRLLECTSYLSHTL 262
G E N +N Q + D + +L
Sbjct: 1835 KR---TGWLV-------EIVNYNVENQQYVAAGDLRALDTVTN-----VL---------- 1869
Query: 263 DFNYLEGKPLSLVIELQEELKPVLSRMNEIL 293
N+++ + + + IELQ+ L L + L
Sbjct: 1870 --NFIKLQKIDI-IELQKSLS--LEEVEGHL 1895
Score = 43.9 bits (103), Expect = 2e-04
Identities = 66/459 (14%), Positives = 125/459 (27%), Gaps = 185/459 (40%)
Query: 198 LGGNPINILARQINME----------LLKI--------------GHQCPLYQSSAE---- 229
L GN I+ LA ++ E L+K L+++ E
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 230 ---------NSDN----LQV-----PKDKDDLVEREFNRLLE-------CTSYLSHTLDF 264
N+D+ L+ DL++ L E + L+
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 265 -------------NYLEGKPLSLVI---------------------ELQEELKPVLSRMN 290
+YL P+S + EL+ LK
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 291 EILVQL-----DTLDQTLQNVPIDNTTAVE--FQ--KRSTRRDMNHLCTEYDQLNEKKTQ 341
++ + D+ + +V A+ F R Y + +
Sbjct: 276 GLVTAVAIAETDSWESFFVSV----RKAITVLFFIGVRCYEA--------YPNTSLPPSI 323
Query: 342 LQAKLHAMESNP-PADVYLSVKD---RQLLDWHFANLEFANAT-PLA---SLSLKHWDQD 393
L+ L E P P LS+ + Q+ D+ + N+ P +SL +
Sbjct: 324 LEDSLENNEGVPSPM---LSISNLTQEQVQDY----VNKTNSHLPAGKQVEISLV--NGA 374
Query: 394 DDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453
+ +G P +L GL++ K Q+
Sbjct: 375 KNLVVSGP-----------PQSL-YGLNLTLRK-------------AK-APSGLDQSRIP 408
Query: 454 YTGDRVLCT---LPLG------ILKACIQ------PPKDVLFNPPLPDWKV--------K 490
++ ++ + LP+ +L +V FN D ++
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQIPVYDTFDGS 466
Query: 491 SIRRLGYGLLNKVV--LCFDKIFWDPAENL-------FG 520
+R L + ++V + + W+ FG
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 42.7 bits (100), Expect = 4e-04
Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 84/247 (34%)
Query: 1 MEEIEENSNGTIS---SVAKTEGDVYDEDIEYHI-------------------------- 31
+E+ EN+ G S S++ ++ E ++ ++
Sbjct: 324 LEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 32 ---PEGLEG------------AAFQSRLPYDKMTTN-EVQYFPDISNNPIHSHKTFLHIR 75
P+ L G QSR+P+ + ++ P +++ P HSH L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VAS-PFHSH--LLVPA 435
Query: 76 NRILQMWLENPKVQLTLEFVMQKIESPFN-SEVQLVSRLHCYLERHGYINFGIFQRITPI 134
+ ++ L V + + + F+ S+++++S G I+ I I +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS---------GSISERIVDCIIRL 486
Query: 135 PV-------KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIV---TFKKS 184
PV K+ ++ G G G + G+ V+ ++ G R++ T
Sbjct: 487 PVKWETTTQFKATHILDFGPG--GAS--------GLGVLTHRNKDGTGVRVIVAGTL-DI 535
Query: 185 NYVADLG 191
N D G
Sbjct: 536 NPDDDYG 542
Score = 38.9 bits (90), Expect = 0.006
Identities = 53/312 (16%), Positives = 82/312 (26%), Gaps = 93/312 (29%)
Query: 378 NATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTAL---AEGLDVHFNSSVTE---- 430
+A L+L H E VPTA A L FN + E
Sbjct: 2 DAYSTRPLTLSH----GSLEHVLL----------VPTASFFIASQLQEQFNKILPEPTEG 47
Query: 431 ----------IHYNSK--GVTVKTVDPKTGQNETVYTGDRVLCTLPLGILKACIQPPKDV 478
K G V+P V D+VL L L + C D+
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEP-----SKVGQFDQVL-NLCLTEFENCYLEGNDI 101
Query: 479 -------LFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAEN-LFGHVGSTTAS-- 528
L K K + + + + F + + LF VG A
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYI----TARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 529 -----RG-------ELFLFWNLYQAPVLLALVAGEAASILEDVSIFPTNTVPQ-PKETVV 575
+G EL + Y ++ L+ +A L ++ + + +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYH-VLVGDLIK-FSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 576 TRWKADP--------FAKGSYSFVAVG-ASGSDY----DTLGLPVKDDKDIPRLFFAGEH 622
W +P S +G + Y LG + + G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKG-- 269
Query: 623 TIRNYPATVHGA 634
AT H
Sbjct: 270 ------ATGHSQ 275
Score = 35.0 bits (80), Expect = 0.085
Identities = 61/393 (15%), Positives = 102/393 (25%), Gaps = 137/393 (34%)
Query: 354 PADVYLSVKDRQLLDWHFANLEFANATPLASLSLKHWDQDDDF--------EFTG--SHL 403
P + QL + +F P + DD+ +F G S L
Sbjct: 23 PTASFFIA--SQLQE------QFNKILPEPTEGF---AADDEPTTPAELVGKFLGYVSSL 71
Query: 404 TVKKGYACVPTALAEGLDVHFNSSV---TEIHYNSKGVTVKTVDPKT-GQNETV---YTG 456
L L F + +IH + + + T + + + Y
Sbjct: 72 VEPSKVGQFDQVLNLCLT-EFENCYLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 457 DRVLCTLPLGILKACIQPPKDVLFNPPLPDWKVKSIRRLGYGLLNKVVLCFDKIFWDPAE 516
R++ P + LF +++ ++
Sbjct: 129 ARIMAKRPFD------KKSNSALF---------RAVGE------GNA-----QLV----- 157
Query: 517 NLFGHVGSTTASRGELFLFWNLYQ----------APVLLALVAGEAASI----------- 555
+FG G+T EL + Y A L L+ +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 556 -LED--------------VSIFPTNTVPQPKETVVTRWKA--DP------------FAKG 586
LE+ +S P V Q VVT P ++G
Sbjct: 218 WLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 587 SYSFVAVGASGS--DYDTLGLPVKDDKDIPRLFFAGEHTIRNYP-ATVHGAFLSGLKEGG 643
+ VA+ + S + K I LFF G YP ++ + L E
Sbjct: 277 LVTAVAIAETDSWESFFVSV-----RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 644 ----------------HIVDQILGANYRMPGGK 660
+ D + N +P GK
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 49.9 bits (118), Expect = 2e-06
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR---ERVGGRI 178
+ P ++ ++GAG +GL + Q ++V V R E G R+
Sbjct: 11 SSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRL 64
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 49.5 bits (119), Expect = 2e-06
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177
K+ + +VIG GI G A A ++ + + E +GGR
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFE-SGTMGGR 54
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 49.6 bits (119), Expect = 3e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
+ +V+V+GAG SGL AAR + G +VV+ EA +GGR+
Sbjct: 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 49.6 bits (119), Expect = 3e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
P + + V+GAG +GLA A + G +V + +A +GG+
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 412
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 49.7 bits (119), Expect = 3e-06
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
K V+++GAG SG AAR + + G V + + E++GG +
Sbjct: 385 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428
Score = 36.6 bits (85), Expect = 0.025
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 135 PVKKSGKVIVIGAG--ISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGA 192
K +V+++ A + A + G EV ++ T + N + L
Sbjct: 524 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHE 583
Query: 193 MVVTGLGG 200
+ V LG
Sbjct: 584 LHVEELGD 591
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 49.0 bits (118), Expect = 3e-06
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 131 ITPI-PVKKSGK-VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ P P ++ G V VIGAG +GLAAA + G EV V + +R+GG
Sbjct: 112 VKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 48.9 bits (117), Expect = 4e-06
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
V+V+G G G AAR+ ++G++ +++E R +G
Sbjct: 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG 40
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 48.8 bits (116), Expect = 4e-06
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 141 KVIVIGAGISGLAAARHMEQF------GIEVVVLEARERVGG 176
++ ++GAG SG+A R + E+V E + GG
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG 45
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 48.7 bits (117), Expect = 4e-06
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 141 KVIVIGAGISGLAAARHM-EQFGIEVVVLEARERVGG 176
+VIGAG G+ A + + G+ V + + GG
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 48.2 bits (114), Expect = 5e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHM-EQFGIEVVVLEARERVGG 176
P+ + V+G+G GL A + Q V+VLE R +GG
Sbjct: 3 PMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG 45
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 48.1 bits (115), Expect = 6e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
++ V+G ISGL AA + G++V V E
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYER 36
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 48.0 bits (114), Expect = 7e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA----RERVGG 176
+IVIG G G A + G V++LE R ++G
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE 48
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 47.1 bits (111), Expect = 1e-05
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 142 VIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGG 176
VI++GAG SGL+AA + + ++V ++E+ GG
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 47.1 bits (111), Expect = 1e-05
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 142 VIVIGAGISGLAAARHMEQF--GIEVVVLEARERVGGRI 178
++++GAG GL+AA + + + ++EA GG
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 47.3 bits (112), Expect = 1e-05
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA----RERVG 175
V +IG G +G A + + G +V + E R RVG
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 47.1 bits (112), Expect = 1e-05
Identities = 8/32 (25%), Positives = 23/32 (71%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
V++IG G +G +AA + + G+++++++++
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 46.9 bits (112), Expect = 1e-05
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
VIV+GAG G+AA + + G++ ++++A +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
Score = 33.1 bits (76), Expect = 0.28
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
A A G V ++ V + + V ++T YT D+++ +
Sbjct: 160 AEARGAKVLTHTRVEDFDISPDSVKIET-------ANGSYTADKLIVS 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 73/508 (14%), Positives = 139/508 (27%), Gaps = 174/508 (34%)
Query: 226 SSAENSDNLQVPKDKDDLVEREFNRLLE-----CTSYLSHTLDFNYLEGKPLSLVIELQE 280
S E + D R F LL ++ L NY L+ ++
Sbjct: 47 SKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY----KF-LMSPIKT 100
Query: 281 ELK-PVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRS-TRRDMNHLCTEYDQLNEK 338
E + P + I + D+ + + F K + +R Y +L +
Sbjct: 101 EQRQPSMMTRMYI----EQRDRLYNDNQV-------FAKYNVSRLQP------YLKLRQA 143
Query: 339 KTQLQAK----LHAM------------------ESNPPADVY-LSV----KDRQLLDWHF 371
+L+ + + + ++ L++ +L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-ML 202
Query: 372 ANLEF---ANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGL---DV--- 422
L + N T + S + + L K Y L L +V
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCL---LVLLNVQNA 256
Query: 423 ----HFNSS----VTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCTL----PLGILKA 470
FN S +T K VT D + T + D TL +L
Sbjct: 257 KAWNAFNLSCKILLTT---RFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 471 CIQ------PPKDVLFNP--------PLPDWKV--KSIRRLGYGLLNKVV-LCFDKIFWD 513
+ P + + NP + D + + + L ++ + + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--E 367
Query: 514 PAENLFGHVGSTTASRGELFLFWNLYQAPVLLALVAGEAASILEDVSIFPTNTVPQPKET 573
PAE + ++ + +S+FP + P
Sbjct: 368 PAE------------------YRKMF-----------------DRLSVFPPS-AHIPTIL 391
Query: 574 VVTRWKADPFAKGSYSFVAVGASGSDYDTLGLPVKDDKD----IPRLFFAGEHTIRNYPA 629
+ W + V + L K K+ IP ++ + + N A
Sbjct: 392 LSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 630 TVHGAFLSGLKEGGHIVDQILGANYRMP 657
+H + IVD Y +P
Sbjct: 445 -LHRS----------IVDH-----YNIP 456
Score = 42.5 bits (99), Expect = 4e-04
Identities = 54/415 (13%), Positives = 102/415 (24%), Gaps = 148/415 (35%)
Query: 21 DVYDEDIEYHIPEGLEGAAFQSR-LPYDKMTTNEVQYFPDISNNPIHSHKTFLHIRN--- 76
+V + + L +TT Q D + +H + H
Sbjct: 252 NVQNAKA-------WNAFNLSCKIL----LTTRFKQVT-DFLSAATTTHISLDHHSMTLT 299
Query: 77 -----RILQMWLENPKVQLTLEFVMQKIESPF---------------------------N 104
+L +L+ L E + +P
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE--VLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 105 SEVQL-VSRLHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGI 163
+ ++ ++ L R + +F IP ++ + + + + +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI----LLSL------IWFD--VIKSDV 404
Query: 164 EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKIGHQCPL 223
VVV + K S ++ +Q + I +
Sbjct: 405 MVVVNKLH----------KYS--------------------LVEKQPKESTISI-PS--I 431
Query: 224 YQSSAENSDNL-----------QVPK--DKDDLV-EREFNRLLECTSYLSH--------- 260
Y +N +PK D DDL+ S++ H
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPE 488
Query: 261 --------TLDFNYLEGKPLSLVIELQEELKPVLSRMNEILVQLDT-LDQTLQNVPIDNT 311
LDF +LE K I + L QL N P
Sbjct: 489 RMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 312 TAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHAMESNPPADVYLSVKDRQL 366
+ + N +C++Y L L+ L + +Q+
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDL------LRIAL-----MAEDEAIFEEAHKQV 587
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 46.3 bits (110), Expect = 2e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA----RERVGG 176
V+VIGAG +G AA + + G +V ++E R +G
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGE 46
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 45.6 bits (109), Expect = 3e-05
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+ + +++VIG GI G+ A + + G EV V+E + +G
Sbjct: 2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIE-KRFIGS 41
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 45.6 bits (109), Expect = 3e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
V++IG G++GL+ G+ V++ R
Sbjct: 7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 45.9 bits (109), Expect = 4e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V++IG+G +GLAAA G +V++LE GG
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 45.5 bits (108), Expect = 4e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
V+V+G G GLA A + + G V+VLE
Sbjct: 7 VVVVGGGPVGLATAWQVAERGHRVLVLERHT 37
Score = 36.3 bits (84), Expect = 0.029
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 27/105 (25%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT------------ 462
A A G + +VTE+ ++ GV+V T + Y +V+
Sbjct: 163 AQAAGATLRAGETVTELVPDADGVSVTT-------DRGTYRAGKVVLACGPYTNDLLEPL 215
Query: 463 ---LPLGILKACI---QPPKDVLFNPPLPDWKVKSIRRLG--YGL 499
L + + I + V P ++ + + YG
Sbjct: 216 GARLAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGF 260
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 45.1 bits (106), Expect = 4e-05
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 142 VIVIGAGISGLAAARHM-EQFGIEVVVLEARERVGGRI 178
V+V+GAG +GL+AA + + ++V ++E GG
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 45.5 bits (108), Expect = 5e-05
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+G+G +G +AA G +V+++E +GG
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 45.0 bits (107), Expect = 6e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V G GI+G+AA+ + G +V+VLE GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 45.1 bits (107), Expect = 6e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG +G A+ ++ G V++++ GG
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG 158
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 44.9 bits (105), Expect = 7e-05
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY 186
VIV+G G++ + M G +V+ ++ GG +
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEE 53
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 44.7 bits (106), Expect = 7e-05
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+I+IG+G G AA + + G+ V++ +A
Sbjct: 5 LIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35
Score = 35.0 bits (81), Expect = 0.071
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 415 ALAEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT-----------L 463
A G FN VT I ++ GVT++T + Y + + L
Sbjct: 159 AKEAGCAQLFNCPVTAIRHDDDGVTIET-------ADGEYQAKKAIVCAGTWVKDLLPEL 211
Query: 464 PLGILKACI---QPPKDVLFNPPLPDW 487
P+ ++ Q P +
Sbjct: 212 PVQPVRKVFAWYQADGRYSVKNKFPAF 238
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 44.2 bits (105), Expect = 9e-05
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVG 175
+++ GAGI GL+ A + Q GI +V +LE+ +
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 44.5 bits (106), Expect = 9e-05
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL---GAMVVTG 197
KV+V+G SG AAAR + + G V V + + F ++ L G VV
Sbjct: 11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKP--------FDENPTAQSLLEEGIKVV-- 60
Query: 198 LGGNPINILARQINM 212
G +P+ +L
Sbjct: 61 CGSHPLELLDEDFCY 75
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 44.1 bits (105), Expect = 1e-04
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 137 KKSGKVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL--- 190
+++VIG G GL A A + V +L+ RV R+ S + L
Sbjct: 147 IADNRLVVIGGGYIGLEVAATAIKA---NMHVTLLDTAARVLERVTAPPVSAFYEHLHRE 203
Query: 191 -GAMVVTGLG 199
G + TG
Sbjct: 204 AGVDIRTGTQ 213
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 43.7 bits (104), Expect = 1e-04
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 137 KKSGKVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL--- 190
+ +++++G G+ GL A AR G+ V ++E + R+ R +++VA
Sbjct: 143 RPQSRLLIVGGGVIGLELAATARTA---GVHVSLVETQPRLMSRAAPATLADFVARYHAA 199
Query: 191 -GAMVVTGLG 199
G +
Sbjct: 200 QGVDLRFERS 209
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 44.1 bits (103), Expect = 2e-04
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA 170
V+++G+G G AR + G +V + +
Sbjct: 49 VVIVGSGPIGCTYARELVGAGYKVAMFDI 77
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 24/97 (24%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV--------GGRI--------- 178
K GK +IG GI G+ A+ + G + E GG
Sbjct: 143 CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLG 202
Query: 179 VTFKKSNYVADLGA-----MVVTGLGGNPINI-LARQ 209
+ ++ ++G V+T +G P N+ +
Sbjct: 203 IKIYTNSNFEEMGDLIRSSCVITAVGVKP-NLDFIKD 238
Score = 28.3 bits (64), Expect = 7.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVL 168
KS K++++GAG +G +AA+ ++ ++
Sbjct: 7 HKSTKILILGAGPAGFSAAKAALGKCDDITMI 38
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHM-EQFGI-EVVVLEARERVGG 176
P P KKS I++G G GLA A + + GI V VLE + + G
Sbjct: 15 NPEP-KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLE-KGWLAG 59
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV------GGRIVTFKKSNYVAD 189
++ SG+ I+IG G GL A ++ + G V ++ ++ + + +
Sbjct: 140 IENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIK----DMLEE 195
Query: 190 LGAMVVTG 197
G
Sbjct: 196 TGVKFFLN 203
Score = 28.7 bits (65), Expect = 6.4
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 141 KVIVIGAGISGLAAARHM-EQFGIEVVVLEARERV 174
KV+++G G G A+ + + + EV V++
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPVP 42
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 42.8 bits (102), Expect = 2e-04
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
+ + I+IGAG +GL A + + G V V + +++G
Sbjct: 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG 40
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 42.9 bits (102), Expect = 3e-04
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 137 KKSGKVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL--- 190
+ +++++G G+ G AR + G+ V +LEA + + R++ + ++ L
Sbjct: 141 TSATRLLIVGGGLIGCEVATTARKL---GLSVTILEAGDELLVRVLGRRIGAWLRGLLTE 197
Query: 191 -GAMVVTGLG 199
G V G G
Sbjct: 198 LGVQVELGTG 207
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 43.4 bits (102), Expect = 3e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177
V+V+GAG +GLAAAR + G V++L+ R GG
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGT 166
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 43.3 bits (102), Expect = 3e-04
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGG 176
+P S K+ ++GAG + ++ A + + G ++ + E +E VGG
Sbjct: 182 MPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
+VIGAGI+G + + G VVVLE + G
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPG 44
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 42.5 bits (101), Expect = 3e-04
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 137 KKSGKVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL--- 190
V+VIGAG GL A AR G+EV V+E RV R+VT + S+Y D
Sbjct: 140 PDKKHVVVIGAGFIGLEFAATARAK---GLEVDVVELAPRVMARVVTPEISSYFHDRHSG 196
Query: 191 -GAMVVTGLG 199
G + G+
Sbjct: 197 AGIRMHYGVR 206
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 42.5 bits (101), Expect = 3e-04
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 113 LHCYLERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+H + ++ G V + V++IGAG +G+ A + G V+V++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60
Query: 173 RVG 175
G
Sbjct: 61 APG 63
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 42.5 bits (99), Expect = 4e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 141 KVIVIGAGISGLAAARHMEQ--FGIEVVVLE--ARERVGGRIVTF 181
K++VIGAG +GL A ++Q + ++E + V G V
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVL 46
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 42.0 bits (99), Expect = 5e-04
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER--VGGRI 178
V +IGAG SGL + + + GI+ V+LE + V GRI
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRI 43
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 42.2 bits (98), Expect = 5e-04
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK 182
VI++G G+ + + +G +++VL+ GG +
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLN 63
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 41.8 bits (99), Expect = 5e-04
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 141 KVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADL----GAM 193
+VIG G GL A G+ V +LEA RV R+ S + G
Sbjct: 154 NAVVIGGGYIGLEAAAVLTKF---GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVD 210
Query: 194 VVTGLG 199
+ TG
Sbjct: 211 LRTGAA 216
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 41.3 bits (97), Expect = 9e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHM-EQFGIEVVVLEARERVGGR 177
+V+GAG+ GLAAA ++ G V+V++ G
Sbjct: 19 SHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD-AGHAPGS 61
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 41.3 bits (96), Expect = 0.001
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
+VIG+G G AA + Q GI ++E G T
Sbjct: 14 ALVIGSGYGGAVAALRLTQAGIPTQIVEM----GRSWDT 48
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 40.9 bits (96), Expect = 0.001
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 136 VKKSGKVIVIGAGISGL--AAARHME--QFGIEVVVLEARERVGGRIVTFKKSNYVADL 190
++ + +IG G G A A + G EV+ L + G+I+ SN+ +
Sbjct: 177 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEK 235
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 38.4 bits (90), Expect = 0.001
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAM 193
+ + IVIG+ +G+ R + G +V+ ++ + +K + D G
Sbjct: 1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK---------EKIELLEDEGFD 51
Query: 194 VVTG 197
V
Sbjct: 52 AVIA 55
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 38.5 bits (90), Expect = 0.001
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTG 197
IV G I + + Q G V V+ + + A V+ G
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL-----EQRLGDNADVIPG 56
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 40.7 bits (95), Expect = 0.001
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT-----FKKSNYVADLGAMVV 195
V +IG G +G+ AA ++Q + V ++E R +GG + + + +V
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELV 168
Query: 196 TGLGGNPINILAR 208
L N I
Sbjct: 169 GKLNEN-TKIYLE 180
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 40.3 bits (95), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
V++ G GI G A + + G VVV+E R
Sbjct: 9 VLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 40.4 bits (94), Expect = 0.002
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA 170
+VIG G +A + + G++ ++LE
Sbjct: 8 AVVIGTGYGAAVSALRLGEAGVQTLMLEM 36
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 40.5 bits (94), Expect = 0.002
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 135 PVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD---LG 191
+ K +V+GAG GL AA + G VV++E R + V + D LG
Sbjct: 88 QACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALG 147
Query: 192 AMVVTG--LGGNPINILARQINMELLKI 217
A G G +I RQ+ + LLK+
Sbjct: 148 AKKFYGRFCTGTLDHISIRQLQLLLLKV 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.002
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 17/43 (39%)
Query: 337 EKKT--QLQA--KLHAMESNPPADVYLSVKDRQLLDWHFANLE 375
EK+ +LQA KL+A +S PA L++K A +E
Sbjct: 18 EKQALKKLQASLKLYADDS-APA---LAIK---------ATME 47
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 39.7 bits (92), Expect = 0.003
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 142 VIVIGAGISGLAAARHMEQFG-----IEVVVLEARERVG 175
+I +G G S +A A +++ +EV+ L+ +
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR 71
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 39.7 bits (93), Expect = 0.003
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
V+V+GAG+ GL+ A R G+ V+V+E R +
Sbjct: 8 VLVVGAGLGGLSTAMFLARQ----GVRVLVVERRPGL 40
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 39.5 bits (92), Expect = 0.003
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEA 170
KS ++++GAG G + A H+ + G V VL+
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDP 38
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 39.1 bits (92), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVG 175
VIVIG G SGL AA + G V++L+ ++G
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 62
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
VIV+GAG +G+ A G+EVVVLE
Sbjct: 14 VIVVGAGPAGMMLAGELRLA----GVEVVVLERLVER 46
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.20A {Homo sapiens}
Length = 259
Score = 38.3 bits (89), Expect = 0.005
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 23/109 (21%)
Query: 125 FGIFQRITPIPVKKSGKVIVI-GAGISG---LAAARHMEQFGIEVVV------------- 167
G R+ P V + V ++ G + G ++ RH+ ++V++
Sbjct: 71 LGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESIT 130
Query: 168 --LEARERVGGRIVTFKK--SNYVADL--GAMVVTGLGGNPINILARQI 210
L + G+ V+ K DL + +
Sbjct: 131 NELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAA 179
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 38.6 bits (90), Expect = 0.005
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFG--IEVVVLEARER 173
KV+V+G G G AA++++ IEV ++E
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 38.8 bits (91), Expect = 0.005
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
I IG G +G + ++ G ++++ +GG
Sbjct: 46 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 80
Score = 35.7 bits (83), Expect = 0.047
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G+++ S+VT I ++ G V + D V
Sbjct: 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRI-ETDFVF 309
Score = 30.3 bits (69), Expect = 2.3
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
P V+V+G + + G V+L E +
Sbjct: 212 EPGST---VVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL 251
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 38.9 bits (91), Expect = 0.006
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
V+++G G G+A A + +V+E +
Sbjct: 29 VLILGGGPVGMALALDLAHR----QVGHLVVEQTDGT 61
Score = 31.2 bits (71), Expect = 1.3
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 415 ALAE--GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453
LAE G + S + V D +TG V
Sbjct: 143 LLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAV 183
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 38.5 bits (89), Expect = 0.006
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
+V+V+G+G+ GL++A + + G V +L
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.60A {Pyrococcus
furiosus}
Length = 158
Score = 37.0 bits (86), Expect = 0.006
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAA----ARHMEQFGIEVVVLEARER 173
TP+P++K GK++ IGA G+ A+ ++ G +V L
Sbjct: 16 TPVPMEKFGKILAIGAYT-GIVEVYPIAKAWQEIGNDVTTLHVTFE 60
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 38.5 bits (90), Expect = 0.006
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
V+V+G G GL A + G+ +VLE
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP 84
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 38.6 bits (91), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
VIG G G+ + R G +V + E R GG
Sbjct: 9 FVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGG 41
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 38.3 bits (90), Expect = 0.007
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+V+++GAG+ G A + G ++ V+ E+V
Sbjct: 142 AAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV 180
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 36.5 bits (85), Expect = 0.007
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAA----ARHMEQFGIEVVVLEARER 173
TP+P++K GK++ IGA G+ A+ ++ G +V L
Sbjct: 11 TPVPMEKFGKILAIGAYT-GIVEVYPIAKAWQEIGNDVTTLHVTFE 55
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 38.4 bits (90), Expect = 0.007
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
VIV+GAG +GL A G++V+VLE +
Sbjct: 15 VIVVGAGPAGLMLAGELRLG----GVDVMVLEQLPQR 47
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 38.3 bits (90), Expect = 0.007
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
I IG G GLA A FG V ++E++ +GG
Sbjct: 8 IAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGG 40
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 38.5 bits (89), Expect = 0.007
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 128 FQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR---IVTFKKS 184
++ + P + + IVIG G GL A + Q G +++E + V R F +
Sbjct: 96 YKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRK 155
Query: 185 NYVADLGAMVVTGLGGN 201
+ + + V G GG
Sbjct: 156 RTL-NPESNVQFGEGGA 171
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 38.3 bits (90), Expect = 0.008
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+VIG G G+A+AR +G + +++EA+ +GG
Sbjct: 14 YLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGG 47
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 38.3 bits (90), Expect = 0.008
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G+D + VT + G V K G+ T+ + VL
Sbjct: 253 GIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTL-DAEVVL 293
Score = 34.4 bits (80), Expect = 0.12
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+IVIG+G G A Q G++V V+E R GG
Sbjct: 28 LIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGG 62
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+IV+G G+ GL + G +V V+E + + G
Sbjct: 200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG 235
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 34.5 bits (80), Expect = 0.009
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLG 199
K IV+ + A+ + + VV+E E +G +VT + D+ V G
Sbjct: 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILG--VVTER------DI-LDKVVAKG 51
Query: 200 GNPINILARQI 210
NP + +I
Sbjct: 52 KNPKEVKVEEI 62
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 37.9 bits (89), Expect = 0.010
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
VIG+G G+ AAR G V + E R+GG
Sbjct: 30 FVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGG 62
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 37.9 bits (89), Expect = 0.011
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+VIG G GLA+AR + G V+E+ ++GG
Sbjct: 24 LVIGGGSGGLASARRAAELGARAAVVESH-KLGG 56
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 37.6 bits (88), Expect = 0.011
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+IVIG G G+AAAR + +V ++E R+GG
Sbjct: 5 LIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGG 38
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 37.6 bits (87), Expect = 0.011
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 23/109 (21%)
Query: 125 FGIFQRITPIPVKKSGKV-IVIGAGISG---LAAARHMEQFGIEVVV------------- 167
G R+ P V + V ++ G + G ++ RH+ ++V++
Sbjct: 118 LGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESIT 177
Query: 168 --LEARERVGGRIVTFKK--SNYVADL--GAMVVTGLGGNPINILARQI 210
L + G+ V+ K DL + +
Sbjct: 178 NELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAA 226
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.4 bits (85), Expect = 0.012
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 142 VIVIGAGISGLAAARHMEQF--GIEVVVLE 169
++VIGAG G A A ++ Q G ++++E
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLVE 68
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 37.5 bits (88), Expect = 0.013
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G+ + V + + GV + G+ + D VL
Sbjct: 232 GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTII-EADVVL 272
Score = 33.3 bits (77), Expect = 0.29
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V++IG G G AA Q G + +E R +GG
Sbjct: 9 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG 43
Score = 29.4 bits (67), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
K++VIGAG GL + G EV V+E +
Sbjct: 179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP 214
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 37.5 bits (88), Expect = 0.013
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
I IG G G+A+ +G + ++EA+ +GG
Sbjct: 7 YIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGG 40
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 37.5 bits (86), Expect = 0.014
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGN 201
VIV+G GI+ + + G +V+ ++ ++ GG + S ++
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 73
Query: 202 PINILARQINMELL 215
R N++L+
Sbjct: 74 SKFGKDRDWNVDLI 87
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 37.1 bits (87), Expect = 0.015
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 36/116 (31%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV---------------------- 174
+ KV+V+GAG L ++ + G+ ++ +++
Sbjct: 146 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIP 205
Query: 175 -----------GGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKIGH 219
G I D M++ G+G +P + N++L + G
Sbjct: 206 YRLNEEINAINGNEITFKSGKVEHYD---MIIEGVGTHPNSKFIESSNIKLDRKGF 258
Score = 31.7 bits (73), Expect = 0.76
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
+ V V I+ + V+V + KT +
Sbjct: 72 QITVKTYHEVIAINDERQTVSVL--NRKTNEQFE 103
Score = 28.6 bits (65), Expect = 7.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
K++V+GA G A R ++ ++++ E +
Sbjct: 3 KIVVVGAVAGGATCASQIRRLDKE--SDIIIFEKDRDM 38
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 35.4 bits (82), Expect = 0.016
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
K+ + VIG G G + + + + G EV+ ++ E
Sbjct: 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK 41
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 36.6 bits (84), Expect = 0.020
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEA 170
+V+VIGAG+ GL+ A + + V+
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD 31
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 36.7 bits (86), Expect = 0.022
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVL--------EARERVGGRIVTFKKSNYV---- 187
GKV+++G G+ G AA+ G +V + G R+ ++
Sbjct: 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETA 227
Query: 188 ---ADL--GAMVVTG 197
ADL GA++V G
Sbjct: 228 VAEADLLIGAVLVPG 242
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 36.3 bits (85), Expect = 0.026
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVL--------EARERVGGRIVTFKKSNYV---- 187
V+++G G G AA+ G +V +L + GGR++T +
Sbjct: 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKS 226
Query: 188 ---ADL--GAMVVTG 197
ADL GA++V G
Sbjct: 227 VQHADLLIGAVLVPG 241
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 36.4 bits (84), Expect = 0.028
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 142 VIVIGAGISGLAAARHMEQF-GIEVVVLEARERV--GGR 177
V+++G G +GL A + F I ++E +E G+
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQ 73
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 35.1 bits (81), Expect = 0.030
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 101 SPFNSEV-QLVSRLHCYLERHGYINFGIFQRITPIPVKK-----SGKVIVIGAGISGLAA 154
+P N ++ +L+ + +V+++G G G A
Sbjct: 3 APLNRLGHKIYQHSGKWLQE--------TAAEKLNQRDQLINPGHAQVLILGMGRIGTGA 54
Query: 155 ARHM-EQFGIEVVVLEA-RERV 174
+ ++G + +E E
Sbjct: 55 YDELRARYGKISLGIEIREEAA 76
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 36.3 bits (85), Expect = 0.030
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G+ V + G+ V+ + G+ E V D+VL
Sbjct: 224 GIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEV-VVDKVL 264
Score = 30.9 bits (71), Expect = 1.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+IVIG G G AA Q G++V+ +E VGG
Sbjct: 9 LIVIGTGPGGYHAAIRAAQLGLKVLAVE-AGEVGG 42
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 36.4 bits (85), Expect = 0.031
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V +IG G +G+ A R ++ +VV++E G
Sbjct: 11 VAIIGTGTAGMGAYRAAKKHTDKVVLIE-GGAYGT 44
Score = 32.2 bits (74), Expect = 0.62
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V V G G+ GL + + + G+ V V V
Sbjct: 176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN 211
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 36.0 bits (84), Expect = 0.039
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
+ +IG+GI+GL+A + + G +V ++
Sbjct: 2 IYIIGSGIAGLSAGVALRRAGKKVTLI 28
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function;
NMR {Bacillus subtilis}
Length = 84
Score = 32.9 bits (75), Expect = 0.043
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHMEQ----FGIEVVVLEARERV 174
IT +PV G+V++ G G + +A + +G V+V++ V
Sbjct: 28 ITAVPVDGFGEVVIEGIGGTISKSAVSFDNQQISYGTTVLVVDINNGV 75
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 35.6 bits (83), Expect = 0.044
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA---------RERVGG 176
+IVIG G +GLA A+ G V L+ + VGG
Sbjct: 12 LIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGG 55
Score = 28.3 bits (64), Expect = 9.5
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 417 AEGLDVHFNSSVTEIHYNSKG-VTVKTVDPKTGQNETVYTGDRVL-------CTLPLGIL 468
G+ + + G + VK + +TG E+ D VL L +
Sbjct: 239 ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETG-EESEDVYDTVLWAIGRKGLVDDLNLP 297
Query: 469 KACIQPPK 476
A + K
Sbjct: 298 NAGVTVQK 305
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 35.8 bits (83), Expect = 0.047
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIE-VVVLE 169
+ ++++IGAGI G A + G + VL+
Sbjct: 2 ASTPRIVIIGAGIVGTNLADELVTRGWNNITVLD 35
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 35.5 bits (83), Expect = 0.049
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 39/119 (32%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV---------------------- 174
K V++IG G G+ A G V ++ ERV
Sbjct: 146 YKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVN 205
Query: 175 --------------GGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKIGH 219
V Y A+ +V+ G P LA+Q+ + + + G
Sbjct: 206 LRLQEITMKIEGEERVEKVVTDAGEYKAE---LVILATGIKPNIELAKQLGVRIGETGA 261
Score = 28.6 bits (65), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
KV++IG G +G++AA R + +V V EA E V
Sbjct: 5 KVVIIGGGAAGMSAASRVKRLKPE--WDVKVFEATEWV 40
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 35.5 bits (83), Expect = 0.052
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
++ S V VIGAG G+ A + + V V E+ E +
Sbjct: 144 LENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL 182
Score = 31.3 bits (72), Expect = 1.0
Identities = 3/36 (8%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
+ + + N V + ++ + + Q +
Sbjct: 70 RQKIQLLLNREVVAMDVENQLIAWT--RKEEQQWYS 103
Score = 28.6 bits (65), Expect = 7.1
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
K+++IGA +G++AA + Q E+ +++ + V
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQ--AEISLIDKQATV 39
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 35.7 bits (83), Expect = 0.054
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEA--------RERVGG 176
I+IG G GLAAA+ Q+G +V+VL+ R +GG
Sbjct: 36 IIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGG 77
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 33.7 bits (78), Expect = 0.059
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFGIEVVVLEA-RERV 174
+++G G G + I +VV+E R RV
Sbjct: 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRV 43
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 35.2 bits (82), Expect = 0.059
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
K+ + +IG+G G A V +++ ERV
Sbjct: 146 APKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV 184
Score = 32.1 bits (74), Expect = 0.58
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
G +V VT + +K + VK D T + +T
Sbjct: 72 GANVQMRHQVTNVDPETKTIKVK--DLITNEEKT 103
Score = 28.6 bits (65), Expect = 7.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
KVIV+G +G A +V E + +
Sbjct: 2 KVIVVGCTHAGTFAVKQTIADHPD--ADVTAYEMNDNI 37
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 35.1 bits (82), Expect = 0.059
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 140 GKVIVIGAGISGLAAARHMEQFGIEVVVL--------EARERVGGRIVTFKKSNYV---- 187
V+VIGAG +G AAR G V VL + GRI T S Y
Sbjct: 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGA 228
Query: 188 ---ADL--GAMVVTG 197
ADL GA++V G
Sbjct: 229 VKRADLVIGAVLVPG 243
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 35.3 bits (82), Expect = 0.060
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 38/118 (32%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV---------------------- 174
KK VIG G G+ ++ + GIEV ++E +V
Sbjct: 185 KKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVE 244
Query: 175 ------------GGRIVTFK-KSNYVADLGAMVVTGLGGNPINILARQINMELLKIGH 219
G +V K S D M++ +G P + LA+ + L G
Sbjct: 245 LVFEDGVDALEENGAVVRLKSGSVIQTD---MLILAIGVQPESSLAKGAGLALGVRGT 299
Score = 32.2 bits (74), Expect = 0.64
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
LD+ S V +I+ K +T+K + T +
Sbjct: 107 NLDIRVLSEVVKINKEEKTITIK--NVTTNETYN 138
Score = 29.1 bits (66), Expect = 6.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
K++V+G G + A R E+ E++++E E +
Sbjct: 38 KIVVVGGVAGGASVAARLRRLSEE--DEIIMVERGEYI 73
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 34.3 bits (78), Expect = 0.062
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 277 ELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLN 336
EL+ EL+ L + + L +Q L+ +E Q + + ++ L + Q
Sbjct: 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101
Query: 337 EKKTQLQAKLHAME 350
K QL + +E
Sbjct: 102 AIKEQLHKYVRELE 115
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 35.2 bits (82), Expect = 0.062
Identities = 21/119 (17%), Positives = 32/119 (26%), Gaps = 39/119 (32%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV---------------------- 174
K V +IG G GL A + G +V ++E + +
Sbjct: 184 NKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIE 243
Query: 175 --------------GGRIVTFKKSNYVADLGAMVVTGLGGNPINILARQINMELLKIGH 219
V K Y AD +V+ +G P N+ G
Sbjct: 244 ILTNENVKAFKGNERVEAVETDKGTYKAD---LVLVSVGVKPNTDFLEGTNIRTNHKGA 299
Score = 32.5 bits (75), Expect = 0.43
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
G+D VT++ K V + KT
Sbjct: 107 GIDAKVRHEVTKVDTEKKIVYAE--HTKTKDVFE 138
Score = 29.0 bits (66), Expect = 6.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
++IG +G++AA R+ E VV LE E
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDEN--ANVVTLEKGEIY 73
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 34.9 bits (80), Expect = 0.064
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRI 178
V V+G G G++ AR G +V V + RI
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 35.2 bits (82), Expect = 0.072
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+G G G +AA G++V ++E + +GG
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG 43
Score = 34.0 bits (79), Expect = 0.15
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
++ N+ + GV V T + E D VL
Sbjct: 240 FDNIMVNTKTVAVEPKEDGVYV-TFEGANAPKEPQ-RYDAVL 279
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 35.2 bits (82), Expect = 0.072
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
+ ++ V N V++ V+ K G+ ETV T + +L
Sbjct: 230 KMKFMTSTKVVGGTNNGDSVSL-EVEGKNGKRETV-TCEALL 269
Score = 33.2 bits (77), Expect = 0.25
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIG G G A+ Q G++ +E R +GG
Sbjct: 5 VVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGG 39
Score = 28.6 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++VIG G+ GL + G EV V+E R
Sbjct: 176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP 211
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 35.2 bits (82), Expect = 0.074
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V VIG+G + +AAA + G +V ++E R +GG
Sbjct: 7 VAVIGSGGAAMAAALKAVEQGAQVTLIE-RGTIGG 40
Score = 30.6 bits (70), Expect = 2.0
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVLCT 462
AEG++V ++ +++ + + T + + D++L
Sbjct: 228 AEGIEVLEHTQASQVAHMDGEFVL------TTTHGEL-RADKLLVA 266
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 33.7 bits (78), Expect = 0.077
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGG 200
+++ G G G A G VVV++ E R+ + + V G
Sbjct: 21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS--------EFSGFTVVGDAA 72
Query: 201 NPINILAR 208
L
Sbjct: 73 EF-ETLKE 79
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.8 bits (81), Expect = 0.081
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 143 IVIGAGISGLAAARHMEQFGIEVVVLEA--------RERVGG 176
+VIG G GLA A+ Q G +V V + + +GG
Sbjct: 10 LVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 51
Score = 29.4 bits (67), Expect = 4.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 417 AEGLDVHFNSSVTEIHYNSKG-VTVKTVDPKTGQNETVYTGDRVL 460
+ G + I + V D +G+ +T T D VL
Sbjct: 237 SHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTG-TFDTVL 280
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 34.8 bits (80), Expect = 0.085
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 142 VIVIGAGISGLAAARHMEQFGIE------VVVLEARERVGGRIV 179
V+++GAG +GL+AA ++Q + V ++E +G +
Sbjct: 38 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL 81
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 34.8 bits (81), Expect = 0.098
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V VIG+G G AA Q G + V +E E +GG
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 43
Score = 31.7 bits (73), Expect = 0.81
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G N+ VT S G +++ +G V T D +L
Sbjct: 234 GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLL 275
Score = 28.2 bits (64), Expect = 8.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
K++VIGAG+ G+ ++ G +V +E VGG
Sbjct: 180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG 215
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 34.1 bits (79), Expect = 0.100
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD-LGAMVVTG 197
KVI+IG + AR M VV++ + A L A ++ G
Sbjct: 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR---------ELCEEFAKKLKATIIHG 50
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 33.9 bits (78), Expect = 0.10
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 134 IPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLG-- 191
I V KS V++ G S L R + G EV VL E +S G
Sbjct: 4 IDVAKSRHVVICGWSESTLECLRELR--GSEVFVLAEDEN---VRKKVLRSGANFVHGDP 58
Query: 192 --------------AMVVTGLGGNPINIL----ARQINMEL 214
V+ L + I R+I+ +
Sbjct: 59 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESV 99
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 34.7 bits (80), Expect = 0.11
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 136 VKKSGKVIVIGAGISGLAAARHMEQF---GIEVVVLEARE 172
++ S V+++GAG G+ AA M++ G EV ++ A +
Sbjct: 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND 40
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 34.5 bits (80), Expect = 0.11
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
V+G G GL + GI+ +LE ++V
Sbjct: 149 NNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV 186
Score = 31.8 bits (73), Expect = 0.77
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
++V V I +K VTV+ G
Sbjct: 72 NVEVRVKHEVVAIDRAAKLVTVR--RLLDGSEYQ 103
Score = 29.1 bits (66), Expect = 5.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
K+++IG G +AA R E E+++ E E V
Sbjct: 3 KILIIGGVAGGASAAARARRLSET--AEIIMFERGEYV 38
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 34.5 bits (80), Expect = 0.11
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
K +V V+GAG G+ A ++ G EVV+++ +
Sbjct: 192 KDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC 229
Score = 29.8 bits (68), Expect = 3.3
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 141 KVIVIGAGISGLAAA-----RHMEQFGIEVVVLEARERV 174
K++V+GA +G A + + E+VV + +
Sbjct: 37 KIVVVGANHAGTACIKTMLTNYGDA--NEIVVFDQNSNI 73
Score = 29.5 bits (67), Expect = 3.8
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV-YTGDR-VLCT 462
G V+ S V I Y++K VT G+N Y D+ + T
Sbjct: 106 GAKVYMESPVQSIDYDAKTVTAL----VDGKNHVETY--DKLIFAT 145
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 34.1 bits (79), Expect = 0.11
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLEARERVGGRIV 179
VIGAG +GL A+ R ++ + + R+
Sbjct: 9 CAVIGAGPAGLNASLVLGR----ARKQIALFDNNTN-RNRVT 45
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 34.4 bits (80), Expect = 0.13
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+ V+VIG+G G+ AA + G +V V++ +R
Sbjct: 147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184
Score = 32.4 bits (75), Expect = 0.43
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 417 AEGLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
+ G++V N+ +T I VTVK D +G+
Sbjct: 68 SRGVNVFSNTEITAIQPKEHQVTVK--DLVSGEERV 101
Score = 28.6 bits (65), Expect = 8.4
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
KVIV+G+ G A E+ E + +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPD--AEIQWYEKGDFI 37
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.2 bits (79), Expect = 0.15
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARE--------RVGG 176
+IVIG G GLAA + ++G + VL+ E +GG
Sbjct: 110 LIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGG 152
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.2 bits (79), Expect = 0.16
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
V++IG+G +GL+ A + +V+VL
Sbjct: 11 VLIIGSGAAGLSLALRLADQH-QVIVL 36
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 33.9 bits (77), Expect = 0.19
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 142 VIVIGAGISGLAAARHMEQF-----GIEVVVLEARE 172
V+++GAG +GL AAR + ++ ++V +++ R
Sbjct: 11 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 33.5 bits (77), Expect = 0.21
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 141 KVIVIGAGISGLAAARHMEQFG--IEVVVLEARER 173
V+VIG G+ G+A A ++ +++ ++ R
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 33.3 bits (76), Expect = 0.23
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 141 KVIVIGAGISGLAAARHM--EQFGIEVVVLEARERVGG 176
++ V+G+G +G A+H+ V + E + G
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 33.4 bits (77), Expect = 0.23
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
+VIGAG +G+ AA + Q G +L
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALL 36
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 33.3 bits (77), Expect = 0.26
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V++IG G +G AA Q G +E R ++GG
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42
Score = 32.9 bits (76), Expect = 0.31
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVK-TVDPKTGQNETVYTGDRVL 460
GLD ++ V N V+ V+ + + +L
Sbjct: 238 GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 280
Score = 28.6 bits (65), Expect = 6.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++ +IG GI GL + G +V V+E + ++G
Sbjct: 185 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 220
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 33.5 bits (77), Expect = 0.26
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
+VIG G++GL AA +Q G+ +VL
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLSTIVL 34
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 33.3 bits (77), Expect = 0.27
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+VIGAG +G A + + V++ + + +GG
Sbjct: 7 VVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGG 41
Score = 29.1 bits (66), Expect = 5.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+++IGAG GL A G++ ++E +R
Sbjct: 174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI 209
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 33.3 bits (77), Expect = 0.27
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQF----GIEVVVLEARERV 174
+ K +++G G GL A GI+ V+E +++
Sbjct: 157 GEVSKAVIVGGGFIGLEMA---VSLADMWGIDTTVVELADQI 195
Score = 32.1 bits (74), Expect = 0.68
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNET 452
++ + I + V ++ + +TG+ T
Sbjct: 80 DVEALVETRAHAIDRAAHTVEIE--NLRTGERRT 111
Score = 28.7 bits (65), Expect = 6.7
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 141 KVIVIGAGISGLAAA----RHMEQFGIEVVVLEARERV 174
V+VIGA G AA R + V +++ R+
Sbjct: 5 HVVVIGAVALGPKAACRFKRLDPE--AHVTMIDQASRI 40
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 33.4 bits (75), Expect = 0.27
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFGIEVVV 167
+ V+++G+G + GI+V V
Sbjct: 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTV 31
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 33.2 bits (76), Expect = 0.27
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 141 KVIVIGAGISG----LAAARHMEQFGIEVVVLEAR 171
+V V+GAG++G R G+ V + E R
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRL----GVPVRLFEMR 33
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 33.1 bits (76), Expect = 0.28
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 141 KVIVIGAGISGLAAARHMEQF---GIEVVVLEARER 173
KV+V+G L AA +++ +V V+
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 33.0 bits (76), Expect = 0.29
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
V+++G+G +G AAA + + GI ++ ER GG+++
Sbjct: 215 VLIVGSGPAGAAAAVYSARKGIRTGLMG--ERFGGQVLD 251
Score = 31.9 bits (73), Expect = 0.83
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
K +V VIG G SG+ AA + V +LE
Sbjct: 354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388
Score = 29.6 bits (67), Expect = 4.2
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 418 EGLDVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETV 453
+ +D+ N+ TE+ + V ++ D +G +V
Sbjct: 404 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSV 440
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 31.7 bits (73), Expect = 0.32
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD-LGAMVVTGLG 199
+I+ G G G A+ + + G ++V+++ + + + A+V+ G
Sbjct: 6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK---------DICKKASAEIDALVINGDC 56
Query: 200 GNP 202
Sbjct: 57 TKI 59
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 32.9 bits (76), Expect = 0.34
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
GL + + VT +K VTVK VD + +++ D+++
Sbjct: 235 GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAF---DKLI 273
Score = 28.6 bits (65), Expect = 7.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
K+ VIGAG+ GL + G EV VLEA ++
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP 217
Score = 28.6 bits (65), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGR 177
VIVIGAG G AA Q G++ ++E + G+
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 33.1 bits (76), Expect = 0.35
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVL 168
+V+GAG +GL AA + + G +
Sbjct: 21 AVVVGAGGAGLRAAFGLSEAGFNTACV 47
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 32.5 bits (74), Expect = 0.36
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVL 168
T + S +V V+G G +G+ AR G V V
Sbjct: 151 TDYTIHGS-QVAVLGLGRTGMTIARTFAALGANVKVG 186
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 31.7 bits (73), Expect = 0.38
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
VIV+G G SGL+AA + + G++V+VL + ++
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVL---DGGRSKVKG 39
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 32.9 bits (76), Expect = 0.38
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++VIGAG G AA Q G++V V+E + +GG
Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38
Score = 29.8 bits (68), Expect = 2.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++IV+G G+ GL + G EV+VLE +R+
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP 204
Score = 29.8 bits (68), Expect = 3.3
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
GL + VT + +KG V+ + DRVL
Sbjct: 222 GLTIRTGVRVTAVVPEAKGARVELEGGEV------LEADRVL 257
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 32.5 bits (75), Expect = 0.39
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEA 170
VI+IG +GL+AA + + +++++A
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVDA 33
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 32.7 bits (75), Expect = 0.40
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTF 181
+ +IG G +G+ AA I ++E+ ++GG++
Sbjct: 17 LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL 56
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 32.1 bits (74), Expect = 0.49
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 139 SGKVIVI-GA--GISGLAAARHMEQFGIEVVVLEARERVGGRIVTFK----KSNYVADLG 191
KV+++ GA GI G A A G +V+ L + + + + V
Sbjct: 7 RDKVVIVTGASMGI-GRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASI 65
Query: 192 AMVVTGLGGNPINIL 206
+ G I++L
Sbjct: 66 DHIFKEYGS--ISVL 78
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 32.1 bits (73), Expect = 0.54
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHM-EQFGIEVV--------VLEARERVGGR-IVT 180
++ I + ++ KV+ IG+G+ G ++ E++G V A ERV G +
Sbjct: 48 LSDIELNENSKVLDIGSGLGGG--CMYINEKYGAHTHGIDICSNIVNMANERVSGNNKII 105
Query: 181 FKKSNY 186
F+ ++
Sbjct: 106 FEANDI 111
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 32.1 bits (74), Expect = 0.59
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 421 DVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETV 453
++ ++SV E++ + GV V K G +
Sbjct: 199 ELITSASVDEVYGDKMGVAGVKVKLKDGSIRDL 231
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 32.1 bits (73), Expect = 0.68
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 141 KVIVIGAGISGLAAARHM-------EQFGIEVVVLEARERVGGRI 178
+ ++G+G S AA + E + V +LE G +
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV 49
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 30.7 bits (70), Expect = 0.70
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVV 195
+K V+ IG S A + M I ++V++ + VG I+T + D +
Sbjct: 14 EKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVG--ILTER------DF-SRKS 64
Query: 196 TGLGGNPINILARQI 210
L + ++I
Sbjct: 65 YLLDKPVKDTQVKEI 79
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 31.3 bits (72), Expect = 0.83
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
V+++GAG +G +AA + + G V +L+ GG
Sbjct: 19 VVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAE 56
Score = 29.8 bits (68), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 418 EGLDVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETV 453
+ N+ VTEI + K VT VK D TG+ + +
Sbjct: 203 RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLI 239
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 31.3 bits (72), Expect = 0.83
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVT 180
V+++G+G +G AAA + + GI ++ ER GG+I+
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMG--ERFGGQILD 40
Score = 29.4 bits (67), Expect = 3.6
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 421 DVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETV 453
D+ N+ TE+ + V ++ D +G +
Sbjct: 196 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNI 229
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 31.3 bits (71), Expect = 0.87
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 129 QRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+P ++I+ GAG G VV + R
Sbjct: 194 HIYSPKE-----RLIIFGAGPDVPPLVTFASNVGFYTVVTDWRP 232
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 31.4 bits (72), Expect = 0.95
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 143 IVIGAGISGLAAARHM-EQFGIEVVVLEARE--------RVGG 176
+VIGAG GL A + +G V V++ + +GG
Sbjct: 11 VVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGG 53
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus
musculus} PDB: 2dg2_A
Length = 265
Score = 31.1 bits (71), Expect = 0.98
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 127 IFQRITPIPVKKSGKVIVIGAGIS-----GLAAARHMEQFGIEVVVL 168
I + P + KS +++ G GL ARH++ FG + +
Sbjct: 66 IAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIY 112
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 31.0 bits (71), Expect = 1.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 139 SGKVIVI---GAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD 189
+ KV ++ +GI GLA + ++G +VV + E+ + K + V +
Sbjct: 13 TDKVAIVTGGSSGI-GLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKID-VTN 64
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 31.3 bits (72), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+++IG G G AA Q GI V++E + +GG
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTVLVE-GQALGG 41
Score = 28.6 bits (65), Expect = 7.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
++V+G G GL + G +V V+EARER+
Sbjct: 173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP 208
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 30.8 bits (70), Expect = 1.2
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 2 EEIEENSNGTISSVAKTEGDVYDEDIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDIS 61
E+I+ ++NG + +E+ E + L +S L TN+V+
Sbjct: 28 EKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLV---DNTNQVEVLQRDP 84
Query: 62 NNPIHSHKTF--LHIRNRILQ----MWLENP-KVQ 89
N+P++S K+F L ++ ++LQ M P K+Q
Sbjct: 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQ 119
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 31.3 bits (72), Expect = 1.2
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G+ + + V I VTV ++VL
Sbjct: 226 GVTILTATKVESIADGGSQVTVT---VTKDGVAQELKAEKVL 264
Score = 30.6 bits (70), Expect = 1.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+I+ GAG G+ ++ +G++V ++E R
Sbjct: 173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP 208
Score = 28.6 bits (65), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+V+GAG G AA Q G+ ++E + GG
Sbjct: 6 VVVLGAGPGGYVAAIRAAQLGLSTAIVE-PKYWGG 39
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 30.9 bits (71), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
+V+GAG G AA Q G +V ++E + +GG
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVE-KGNLGG 39
Score = 30.2 bits (69), Expect = 2.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 419 GLDVHFNSSVTEIHYNSKGVTVKTVDPKTGQNETVYTGDRVL 460
G++V N+ GVTV + D VL
Sbjct: 225 GVEVVTNALAKGAEEREDGVTVTY---EANGETKTIDADYVL 263
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast
hypothetical protein, structural genomics, selenomethi
PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Length = 246
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 27/88 (30%)
Query: 151 GLAAARHMEQFGIEVVV---------------LEARERVGGRIVTFKKSNYVADLGA--- 192
GL ARH++ FG VV + +++ + N++ L
Sbjct: 74 GLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKT 133
Query: 193 -MVV-----TGLGGN---PINILARQIN 211
+V P + ++
Sbjct: 134 LCIVDAIFGFSFKPPMREPFKGIVEELC 161
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 30.0 bits (68), Expect = 1.4
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 130 RITPIPVKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVA 188
+ + +K V+ +G +S AA + I VVV +A V G I T +
Sbjct: 25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLG-IFTER------ 77
Query: 189 DLGAMVVTGLGGNPINILARQI 210
DL V G +
Sbjct: 78 DLVKAVAGQ-GAASLQQSVSVA 98
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 30.9 bits (71), Expect = 1.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 118 ERHGYINFGIFQRITPIPVKKSGKVIVIGAGISG----LAAAR 156
H + + G+ R + + VI+IG G +G +AAAR
Sbjct: 7 HHHHHHSSGLVPRGSHMFYPDPFDVIIIGGGHAGTEAAMAAAR 49
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.6 bits (70), Expect = 1.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGG 176
V+++GAG +GL A ++ G+ ++ GG
Sbjct: 8 VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG 42
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 30.4 bits (68), Expect = 1.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+V + G S + A ++ G V VL A E +
Sbjct: 8 RVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPEDI 41
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.9 bits (70), Expect = 1.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 142 VIVIGAGISGLAAA----RHMEQFGIEVVVLE 169
+++IG G SG AA + G++V ++E
Sbjct: 25 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERV 174
+IV+G+G++G + G+ V V+ +++ V
Sbjct: 184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV 217
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 139 SGKVIVI-GA--GISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNY 186
+ K ++ A GI GL +R + + ++ V+ R + K N
Sbjct: 4 TNKNVIFVAALGGI-GLDTSRELVKRNLKNFVILDRVENPTALAELKAINP 53
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.0 bits (67), Expect = 1.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVV 167
K G V + G G G + M Q G VV
Sbjct: 18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVF 47
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 30.4 bits (68), Expect = 1.7
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 141 KVIVIGA-GISGLAAARHMEQFGIEVVVLEARER 173
V ++GA G G R + + +E
Sbjct: 13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE 46
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 30.6 bits (70), Expect = 1.7
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVADLGAMVVTGLGGN 201
+ +IG G GL A + V ++E+ ++GG++ Y+ D+
Sbjct: 10 ITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKI-RAQE 68
Query: 202 PINILARQI 210
IN L Q+
Sbjct: 69 LINNLKEQM 77
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 30.7 bits (70), Expect = 1.8
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 21/64 (32%)
Query: 136 VKKSGKVIVIGAGISGLAA---ARHM------------------EQFGIEVVVLEARERV 174
VK V + GAG G A AR + G E + L +
Sbjct: 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPL 242
Query: 175 GGRI 178
+I
Sbjct: 243 RDQI 246
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 30.2 bits (69), Expect = 1.9
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 421 DVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETV 453
+ V EI ++ GV+ + + T + +
Sbjct: 195 EFLTPYVVEEIKGDASGVSSLSIKNTATNEKREL 228
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 30.6 bits (68), Expect = 2.0
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 141 KVIVIGAGISGLAAARH-MEQFGIEVVVLEARERVGGRI 178
KV V G G + + G+EV VL R
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERW 42
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 29.0 bits (66), Expect = 2.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIE--VVVLEARERVGGRIVTFK 182
VI A M ++ I VV + R VG IVT +
Sbjct: 71 NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVG--IVTSE 112
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.0 bits (65), Expect = 2.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 141 KVIVIGAGISGLAAARHMEQFG-IEVVVL 168
+ V+GAG G A ++ V V
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 30.0 bits (68), Expect = 2.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 141 KVIVIGAGISGLAA---ARHM----EQFGIEVVVLEARERVGGRIVT 180
K+ V+GAG++GL A AR + + E +G + +
Sbjct: 192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIA 238
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 29.9 bits (68), Expect = 2.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 141 KVIVIGAGISGLAA 154
+V+G G++GL A
Sbjct: 186 SALVLGVGVAGLQA 199
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 29.9 bits (68), Expect = 2.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 141 KVIVIGAGISGLAA 154
+V+V G G++GL A
Sbjct: 174 RVLVFGVGVAGLQA 187
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.0 bits (67), Expect = 2.7
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEV 165
++++G G+ AA ++ +
Sbjct: 25 LLMVGGGMGNCGAAFEAVRWADKY 48
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 29.3 bits (66), Expect = 2.8
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 128 FQRITPIPVKK--SGKVIVIGAGISGLAAARHMEQFGIE--VVVLEARERVGGRIVTFK 182
++ +P++ + + + A ++ + G+E VV + VG IVT
Sbjct: 69 NKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVG--IVTLT 125
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 30.0 bits (68), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 141 KVIVIGAGISGLAA---ARHM----EQFGIEVVVLEARERVGGRIVT 180
KV+VIGAG++GLAA A + F V E + +G +
Sbjct: 174 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 220
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 29.8 bits (68), Expect = 2.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 143 IVIGAGISGLAAARHM-EQFGIEVVVLEARE 172
+VIGAG GL A + V V++ ++
Sbjct: 7 VVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 29.9 bits (68), Expect = 3.2
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGIS---GLAAARHMEQF-GIEVVVLEARERV 174
+ + K + K+++ GAG S G + ++ I++ + + V
Sbjct: 45 KLKSFLDNFAKKPNAKIVITGAGSSAFVGNSVVSYLNAKENIKIEAIATTDIV 97
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 29.8 bits (68), Expect = 3.2
Identities = 4/34 (11%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 421 DVHFNSSVTEIHYNSKGVT-VKTVDPKTGQNETV 453
++ +N+ E + K + ++ + K + +
Sbjct: 225 EILYNTVALEAKGDGKLLNALRIKNTKKNEETDL 258
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 30.0 bits (68), Expect = 3.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 142 VIVIGAGISGLAAARHMEQFGIEVVV 167
+ ++GAG +GL AA Q +
Sbjct: 8 LAIVGAGGAGLRAAIAAAQANPNAKI 33
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 29.9 bits (66), Expect = 3.2
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 3/137 (2%)
Query: 229 ENSDNLQVPKDKDDLVEREFNRLLECTSYLSHTLDFNYLEGKPLSLVIELQEELKPVLSR 288
+ + NL P+ D + + + + + H L P +L LK + +
Sbjct: 2 QGNPNLSSPQPILDTIYKLLSEQEQTLVQMIHEQ-SLLLNRLPPTLDENSLAPLKSLSQK 60
Query: 289 MNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNEKKTQLQAKLHA 348
+ Q++T L L ++ QL+ ++Q+ L+
Sbjct: 61 QITLSGQMNTEMSALDAT-KKGMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNP 119
Query: 349 MESNPPADVYLSVKDRQ 365
S P +V L + Q
Sbjct: 120 QHSAPKPNVALVL-KSQ 135
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.6 bits (66), Expect = 3.3
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 269 GKPLSLVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHL 328
K I + + + + + L Q + +A + R +
Sbjct: 33 PKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGL----LSAGHPEGEQIIRLQGQV 88
Query: 329 CTEYDQLNEKKTQLQAKLHAMES 351
Y L + + + KL M
Sbjct: 89 DKHYAGLKDVAEERKRKLENMYH 111
Score = 28.4 bits (63), Expect = 7.2
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 272 LSLVIELQEELKPVLSR------MNEILVQLDTLDQTLQNVPIDNTTAVEFQKR---STR 322
L L+ + L EIL +D + L + + E R +
Sbjct: 203 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
Query: 323 RDMNHLCTEYDQLNEKKTQLQAKLHAMES 351
RD++ L + Q + T+LQ ++
Sbjct: 263 RDVHLLGVQVQQFQDVATRLQTAYAGEKA 291
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 29.8 bits (68), Expect = 3.3
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 23/83 (27%)
Query: 151 GLAAARHMEQFGIEVVVL--------EAR------ERVGGRIVTFKKSNYVADLGAMVV- 195
G AR++ +V+V+ + ++ GG++V + + + + +VV
Sbjct: 68 GFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEPSILNE-FDVVVD 126
Query: 196 ----TGLGGN---PINILARQIN 211
TGL G + +N
Sbjct: 127 AIFGTGLRGEITGEYAEIINLVN 149
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 28.7 bits (65), Expect = 3.3
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 130 RITPIPVKK--SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVT 180
T + + V +G + AAA++M + I + + +R+ G ++T
Sbjct: 4 PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHG-MLT 56
>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase
superfamily fold, D-glucarate dehydratase, D-glucara
isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes}
PDB: 3n6j_A 3n6h_A*
Length = 455
Score = 29.8 bits (67), Expect = 3.3
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 372 ANLEFANATPLASLSL-KHWD-QDDDFEFTGSHLTVKKGYACVPTA 415
A P +L HW Q+ DF T + L +K G +
Sbjct: 351 MFSHVGAAAPGNPTALDTHWIWQEGDFYLTKNPLEIKDGKIKLNDK 396
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 28.8 bits (65), Expect = 3.4
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 139 SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVTFKKSNYVADLGAMVVTG 197
+ + A + M + GI ++V++ + G IVT + D VV
Sbjct: 20 GRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAG--IVTER------DYARKVVLQ 71
Query: 198 LGGNPINILARQI 210
+ +I
Sbjct: 72 -ERSSKATRVEEI 83
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 29.9 bits (68), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 10/35 (28%)
Query: 142 VIVIGAGISGL-----AAARHMEQFGIEVVVLEAR 171
+IVIG GI+G AA R G+ V++LEA+
Sbjct: 6 LIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.8 bits (66), Expect = 3.6
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 141 KVIVIGAGISGLAAARHM-EQFGIEVVV 167
V+++G+G + I V V
Sbjct: 25 NVLLLGSGFVAQPVIDTLAANDDINVTV 52
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.5 bits (67), Expect = 3.8
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARERVGGRIVTFKKSNYVAD-LGAMVVTGLG 199
K+I++GAG G A ++ ++ +++ + + D VV G
Sbjct: 5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG---------DRLRELQDKYDLRVVNGHA 55
Query: 200 GNP 202
+P
Sbjct: 56 SHP 58
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 29.5 bits (67), Expect = 3.9
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 126 GIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGI--EVVVLEARERVGG 176
G + K K+ V+G G G+A + GI +V+L+ E G
Sbjct: 1 GSSKSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKG 53
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 29.4 bits (66), Expect = 4.0
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 129 QRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
P P +++V GA A A+ G V V +AR
Sbjct: 199 SSYAPRP-----RMLVFGAIDFAAAVAQQGAFLGYRVTVCDARP 237
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 28.8 bits (65), Expect = 4.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 136 VKKSGKVIVIGAGISGLA----AARHMEQFGIEVVVL 168
+ K+ K+ + G G SG A R M G + +
Sbjct: 37 IIKAKKIFIFGVGRSGYIGRCFAMRLM-HLGFKSYFV 72
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function;
1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Length = 200
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 136 VKKSGKVIVIGAGISGLA----AARHMEQFGIEVVVL 168
+ + + VIGAG SG A R M G V V+
Sbjct: 44 IDSARSIFVIGAGRSGYIAKAFAMRLM-HLGYTVYVV 79
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 29.2 bits (66), Expect = 4.4
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 2 EEIEENSNGTISSVAKTEGDVYDEDIEYHIPEGLEGAAFQSRLPYDKMTTNEVQYFPDIS 61
E+I+ ++NG + +E+ E + L +S L + +Q P
Sbjct: 28 EKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDP--- 84
Query: 62 NNPIHSHKTF--LHIRNRILQ 80
N+P++S K+F L ++ ++LQ
Sbjct: 85 NSPLYSVKSFEELRLKPQLLQ 105
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 29.2 bits (66), Expect = 4.5
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 21/64 (32%)
Query: 136 VKKSGKVIVIGAGISGLAA---ARHM------------------EQFGIEVVVLEARERV 174
V V V GAG GLAA AR + + G E+ L +
Sbjct: 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPL 242
Query: 175 GGRI 178
+I
Sbjct: 243 HEQI 246
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 29.3 bits (66), Expect = 4.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEARER 173
KV+V+G G G+ +G+EV + RE
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREP 215
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 28.7 bits (65), Expect = 5.1
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 142 VIVIGAGISG----LAAAR 156
V+++GAG SG A+
Sbjct: 6 VLIVGAGFSGAETAFWLAQ 24
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 28.7 bits (65), Expect = 5.6
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 132 TPIPVKKSGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARE 172
P V++ KV +IG+G+ G + +VV+ + +
Sbjct: 2 APALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 28.7 bits (65), Expect = 5.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 139 SGKVIVI---GAGISGLAAARHMEQFGIEVVVLEARERVGGRIV 179
+GKV+V+ G GI G R G VV+ + E G +
Sbjct: 8 AGKVVVVTGGGRGI-GAGIVRAFVNSGARVVICDKDESGGRALE 50
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 28.4 bits (63), Expect = 5.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVV 167
KV ++G+G + A + G +VVV
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVV 56
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 28.9 bits (65), Expect = 5.8
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 117 LERHGYINFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVL-------- 168
+E + + S V+VIGAG +G A A ++ G +VV+
Sbjct: 342 IEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL 401
Query: 169 EARERVGGRIVTFKKSNYVADLGAMVV---TGLGGNP 202
E E +GG+ ++ + MV+ T +G P
Sbjct: 402 ELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQP 438
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3
PDB: 1viv_A
Length = 186
Score = 28.1 bits (63), Expect = 6.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 136 VKKSGKVIVIGAGISGLAA 154
+ S ++ GAG SGL A
Sbjct: 34 ILSSHQIFTAGAGRSGLMA 52
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.0 bits (66), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 142 VIVIGAGISG----LAAAR 156
V+VIG G +G LAAAR
Sbjct: 30 VVVIGGGHAGIEAALAAAR 48
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.6 bits (63), Expect = 6.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVLEAR 171
+++IGAG A+ + + G +V + +R
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSR 42
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 28.6 bits (64), Expect = 6.3
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 353 PPADVYLSVKDRQLLDWHFANLEFANATPLASLSLKH---------WDQDDDFEFTGSHL 403
PP D L DW F E A+ P S+ Q++ ++
Sbjct: 28 PPKSCAAIGTDVDLRDWGFDTFEVASRVPSVLQSVAMHVALAWDFFASQEEAQKWAFLVA 87
Query: 404 TVKKGYACVP 413
V+ Y P
Sbjct: 88 AVENNYRPNP 97
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 27.6 bits (62), Expect = 6.4
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 135 PVKK--SGKVIVIGAGISGLAAARHMEQFGIE-VVVLEARERVGGRIVTFK 182
++ + +I I A M QF I + V++ + + G I++ +
Sbjct: 68 KAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKG-IISIR 117
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.0 bits (66), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 142 VIVIGAGISG----LAAAR 156
VIV+GAG +G LA AR
Sbjct: 24 VIVVGAGHAGCEAALAVAR 42
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.4 bits (64), Expect = 7.5
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 120 HGYINFGIFQRITPIPVKKSGKVIVIGAGISGL---AAARHMEQFGIEVVVLEARERVGG 176
+ + V+G G GL A + ++ + L R+R
Sbjct: 157 KALEHAYASRSAFDWDPSS---AFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDP 213
Query: 177 RIVTFKKSNYVADLGAMVV 195
I + + +L A V
Sbjct: 214 TI------DIIEELDATYV 226
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.1 bits (62), Expect = 7.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVV 167
K+ V+G G G A + G EV +
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTI 47
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 28.4 bits (64), Expect = 7.7
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 124 NFGIFQRITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+ G V +IG G G A A GIE ++ E
Sbjct: 42 DRGDHTNSEAYDVNSVA---IIGGGTMGKAMAICFGLAGIETFLVVRNE 87
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 28.4 bits (64), Expect = 7.9
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 131 ITPIPVKKSGKVIVIGAGISGLAAARHMEQFGIEVVVLEARE 172
+ PV G V+G G G A + GI VV +E+
Sbjct: 32 ASAQPVSSVG---VLGLGTMGRGIAISFARVGISVVAVESDP 70
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental
protein, DNA-binding, nucleus; 2.50A {Caenorhabditis
elegans} PDB: 3c2h_A*
Length = 619
Score = 28.6 bits (63), Expect = 8.0
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 217 IGHQCPLYQSSAENSDNLQVPKDKDDLVEREFN---RLLECTSYLSHTLDFNYLEGKPLS 273
IGH C Y +N + K LVER + L+E ++Y PL+
Sbjct: 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLN 554
Query: 274 LVIELQEELKPVLSRMNEILVQLDTLDQTLQNVPI 308
L+ ++KP I L D+ L++ P
Sbjct: 555 LLN--GNQVKPTF-----IHNVLVVCDKILEHCPT 582
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.5 bits (63), Expect = 8.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 138 KSGKVIVIGAGISGLAAARHMEQFGIEVVV 167
+S V+G G G A A ++ G V+
Sbjct: 3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLA 32
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 28.1 bits (63), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 141 KVIVIGAGISGLAAARHMEQFGIEVVVL 168
K+++ G G GL AR + G EV L
Sbjct: 5 KILIAGCGDLGLELARRLTAQGHEVTGL 32
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 28.6 bits (63), Expect = 8.8
Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 282 LKPVLSRMNE----ILVQLDTLDQTLQNVPIDNTTAVEFQKRSTRRDMNHLCTEYDQLNE 337
++ + S +N+ ++ ++ + +P+ + T + R+ HL E+D +N
Sbjct: 123 VRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEHDVVNA 182
Query: 338 KK 339
++
Sbjct: 183 QR 184
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 27.2 bits (61), Expect = 9.3
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 134 IPVKK--SGKVIVIGAGISGLAAARHMEQFGI-EVVVLEARERVGGRIVT 180
P+K + K++ + S A+R M +F + +VV+ V G T
Sbjct: 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVG-FFT 55
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 28.3 bits (62), Expect = 9.5
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 371 FANLEFANATPLASLSLKHWDQDDDFEFTGSHLTVKKGYACVPTALAEGLDVHFNSSVTE 430
ANL F T S ++ + D + T YA P +N + +
Sbjct: 115 VANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQ--AYAYYPGNYQGAGSSWYNYNQSN 172
Query: 431 IHYNSKG 437
I
Sbjct: 173 IRNPGSE 179
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.1 bits (62), Expect = 9.5
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 137 KKSGKVIVIGAGISGLAAARHMEQFGIEVV 166
+ +++++G G + EV+
Sbjct: 50 GNATRLVILGTKGFGAHLMNVRHERPCEVI 79
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 28.3 bits (64), Expect = 9.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 143 IVIGAGISGLA-AARHMEQFGIEVVVLEA 170
I+ G G++GL AA+ E I+V+V+E
Sbjct: 28 IIAGGGLTGLTVAAKLTENPKIKVLVIEK 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,336,920
Number of extensions: 651572
Number of successful extensions: 2385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2274
Number of HSP's successfully gapped: 392
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)