BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6039
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 89 VRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEG----------LYT 138
V++YAEA K G+ R + AG N K V TL G LY
Sbjct: 197 VQAYAEAVKSGVHRTVHAGEV-------GSANVVKEAVDTLKTERLGHGYHTLEDTTLYN 249
Query: 139 NLQYREFKPEIFPKVKVL-GIWSPKLDGA 166
L+ EI P L G W P + A
Sbjct: 250 RLRQENMHFEICPWSSYLTGAWKPDTEHA 278
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 89 VRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEG----------LYT 138
V++YAEA K G+ R + AG N K V TL G LY
Sbjct: 198 VQAYAEAVKSGVHRTVHAGEV-------GSANVVKEAVDTLKTERLGHGYHTLEDTTLYN 250
Query: 139 NLQYREFKPEIFPKVKVL-GIWSPKLDGA 166
L+ EI P L G W P + A
Sbjct: 251 RLRQENMHFEICPWSSYLTGAWKPDTEHA 279
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 89 VRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEG----------LYT 138
V++YAEA K G+ R + AG N K V TL G LY
Sbjct: 198 VQAYAEAVKSGVHRTVHAGEV-------GSANVVKEAVDTLKTERLGHGYHTLEDTTLYN 250
Query: 139 NLQYREFKPEIFPKVKVL-GIWSPKLDGA 166
L+ EI P L G W P + A
Sbjct: 251 RLRQENMHFEICPWSSYLTGAWKPDTEHA 279
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 89 VRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEG----------LYT 138
V++YAEA K G+ R + AG N K V TL G LY
Sbjct: 197 VQAYAEAVKSGVHRTVHAGEV-------GSANVVKEAVDTLKTERLGHGYHTLEDTTLYN 249
Query: 139 NLQYREFKPEIFPKVKVL-GIWSPKLDGA 166
L+ EI P L G W P + A
Sbjct: 250 RLRQENMHFEICPWSSYLTGAWKPDTEHA 278
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 15 TATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDK 56
T ++ S YDG+V+ + PE A +++L++E S+ K
Sbjct: 81 TFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGK 122
>pdb|3UE3|A Chain A, Crystal Structure Of Acinetobacter Baumanni Pbp3
Length = 554
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 122 PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESV 171
P+ + L +G+YT Y+ + P+ P +++G+ + +G G+E +
Sbjct: 117 PQQADLILQHNFQGVYTEKSYKRYYPQPQPNAQIIGLTNS--EGRGIEGL 164
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 34 VPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKE 85
+P++ IK L Q ID N ITL+ +SLP ++ Y N T E
Sbjct: 243 LPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLE 294
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 34 VPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKE 85
+P++ IK L Q ID N ITL+ +SLP ++ Y N T E
Sbjct: 228 LPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLE 279
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 34 VPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKE 85
+P++ IK L Q ID N ITL+ +SLP ++ Y N T E
Sbjct: 236 LPDENISVNEYIKTLTGQKFIDLIKNAKITLVRASLPKFKYEYTIKMNETLE 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,219,126
Number of Sequences: 62578
Number of extensions: 248262
Number of successful extensions: 474
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 17
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)