BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6039
         (203 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 OS=Caenorhabditis elegans
           GN=W07G4.4 PE=1 SV=1
          Length = 522

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 14/202 (6%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNK--VPEDAAYPQ--PIIKLLQEQSKIDKGFNDDITL 64
           L  ++  ATS+  + +D +VLV ++  V +  A  Q   I   +    K+  G  +  +L
Sbjct: 7   LSTKIVRATSIADAAFDAVVLVGSQDNVQQFGAIQQVSAIAPAVNNFLKLHSGAFNSTSL 66

Query: 65  LH---SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNF 121
           +    S +P+ R + + TGN++++YDDVR Y  AA+KGI+ AL AG+  PLL    +  F
Sbjct: 67  VQVDSSVVPSGRLILSGTGNVSRDYDDVRRYQAAARKGISMALSAGVKSPLLITLPNSRF 126

Query: 122 PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWS--PKLDGAGLESVVSAATTLE 179
           P +E+V  LGA+  +YT L  RE   E   K+  LG+ +       A LE +V A    +
Sbjct: 127 PNAELVAALGALTPVYTPLNVRE--EENKQKLNQLGLLAIGNSDTSARLEKLVEA---YD 181

Query: 180 SARWVARDIGGTDPERMAPPVI 201
           ++  V RD+G   PERMAPP +
Sbjct: 182 ASFTVCRDVGEAGPERMAPPRV 203


>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2
          Length = 598

 Score = 31.6 bits (70), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 20  ESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYA-- 77
           +  D++   ++S ++ E A   Q ++ L  +QSK+   + ++IT L + L A R   A  
Sbjct: 62  QKDDFEYKAMISAQINEMALMKQTVMDLEMQQSKVKDRYEEEITSLKAQLEARRKEIASG 121

Query: 78  --PTGNMTKEYDDVRSYAEAAKKG 99
             P  + TK   +  S+ +    G
Sbjct: 122 VVPQSSKTKHGRNSVSFGKYGNAG 145


>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
          Length = 1786

 Score = 31.2 bits (69), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 7    QNLPYEVKTATSLESSDYDGIVLVSNKV--PEDAAYPQPIIKLLQE-QSKIDKGFNDDIT 63
            +NL  +++   + +S+D D I  V+N+V   E  + PQ +  L ++ + +++     ++ 
Sbjct: 1501 RNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVI 1560

Query: 64   LLHSSLPASR--FVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGI 108
            L HS+   +R   +       +K   DV+  A+  K+ +  A KA +
Sbjct: 1561 LQHSAADIARAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQV 1607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,152,174
Number of Sequences: 539616
Number of extensions: 3172717
Number of successful extensions: 6311
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6305
Number of HSP's gapped (non-prelim): 11
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)