Query psy6039
Match_columns 203
No_of_seqs 79 out of 81
Neff 4.6
Searched_HMMs 46136
Date Sat Aug 17 00:57:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2597|consensus 99.1 2.3E-11 5E-16 116.1 2.9 173 23-203 24-213 (513)
2 PRK00913 multifunctional amino 98.8 2.6E-08 5.6E-13 95.1 11.3 178 18-203 9-195 (483)
3 cd00433 Peptidase_M17 Cytosol 98.6 2.9E-07 6.3E-12 87.5 11.7 146 48-203 30-178 (468)
4 PTZ00412 leucyl aminopeptidase 96.8 0.0068 1.5E-07 59.5 9.2 126 70-203 83-236 (569)
5 COG0260 PepB Leucyl aminopepti 93.9 0.67 1.5E-05 45.0 10.8 125 71-202 66-190 (485)
6 PF02789 Peptidase_M17_N: Cyto 93.2 0.9 2E-05 34.3 8.7 85 52-139 32-119 (126)
7 COG1794 RacX Aspartate racemas 61.6 18 0.0004 32.2 5.2 80 20-114 31-123 (230)
8 PRK05282 (alpha)-aspartyl dipe 57.0 38 0.00082 29.8 6.4 60 27-109 3-63 (233)
9 KOG1707|consensus 55.9 11 0.00024 37.9 3.1 78 27-106 118-203 (625)
10 TIGR02820 formald_GSH S-(hydro 46.8 6.4 0.00014 33.7 -0.0 8 190-197 142-149 (182)
11 COG1163 DRG Predicted GTPase [ 41.3 65 0.0014 30.6 5.6 66 23-94 140-209 (365)
12 PRK10719 eutA reactivating fac 41.1 42 0.00091 32.9 4.5 47 71-119 373-419 (475)
13 COG0329 DapA Dihydrodipicolina 40.5 2.3E+02 0.0051 25.4 9.0 90 19-132 34-124 (299)
14 PF05404 TRAP-delta: Transloco 38.1 33 0.00071 29.2 2.9 55 88-142 97-161 (167)
15 PF02189 ITAM: Immunoreceptor 36.8 16 0.00036 21.0 0.7 11 135-145 2-12 (21)
16 cd01477 vWA_F09G8-8_type VWA F 36.2 1.7E+02 0.0036 24.6 6.9 71 18-94 14-92 (193)
17 cd02903 Macro_BAL_like Macro d 34.7 2.3E+02 0.0049 22.3 12.3 116 15-135 6-133 (137)
18 PF13607 Succ_CoA_lig: Succiny 33.7 91 0.002 25.1 4.8 65 20-93 51-117 (138)
19 PF08800 VirE_N: VirE N-termin 32.1 2E+02 0.0043 22.9 6.5 89 9-106 9-109 (136)
20 cd01896 DRG The developmentall 31.2 1.8E+02 0.0038 24.9 6.4 68 22-94 76-146 (233)
21 PF12601 Rubi_NSP_C: Rubivirus 31.1 30 0.00066 24.7 1.4 24 85-111 41-66 (66)
22 PRK05805 phosphate butyryltran 30.2 1.9E+02 0.004 26.2 6.6 91 19-117 87-178 (301)
23 TIGR03275 methan_mark_8 putati 27.9 3.2E+02 0.007 24.9 7.6 122 17-178 83-215 (259)
24 PRK05015 aminopeptidase B; Pro 27.5 28 0.00061 33.6 0.9 92 85-203 33-124 (424)
25 COG1617 Uncharacterized conser 26.8 29 0.00062 29.4 0.8 20 171-190 52-71 (158)
26 PF07311 Dodecin: Dodecin; In 26.8 64 0.0014 23.4 2.5 16 91-106 15-30 (66)
27 COG0092 RpsC Ribosomal protein 26.1 61 0.0013 29.0 2.7 26 91-116 119-144 (233)
28 COG1659 Uncharacterized protei 26.0 1.7E+02 0.0036 26.5 5.4 54 70-124 127-182 (267)
29 cd01681 aeEF2_snRNP_like_IV Th 25.8 1.3E+02 0.0028 24.7 4.5 41 73-113 87-129 (177)
30 COG1432 Uncharacterized conser 25.6 1.5E+02 0.0033 24.7 4.9 23 70-94 133-155 (181)
31 PF06277 EutA: Ethanolamine ut 25.5 1.5E+02 0.0033 29.1 5.5 49 68-118 369-417 (473)
32 TIGR01753 flav_short flavodoxi 24.5 3E+02 0.0066 20.5 7.5 69 22-110 44-113 (140)
33 PF15050 SCIMP: SCIMP protein 24.4 28 0.0006 28.6 0.2 13 77-90 112-124 (133)
34 cd04862 PaeLigD_Pol_like PaeLi 22.5 3.4E+02 0.0073 24.1 6.7 74 23-102 97-172 (227)
35 TIGR02778 ligD_pol DNA polymer 22.4 3.4E+02 0.0075 24.3 6.8 75 23-103 113-189 (245)
36 smart00077 ITAM Immunoreceptor 22.4 31 0.00066 20.8 0.1 11 135-145 2-12 (26)
37 cd04866 LigD_Pol_like_3 LigD_P 21.8 4.1E+02 0.0089 23.6 7.0 76 22-103 91-169 (223)
38 cd04861 LigD_Pol_like LigD_Pol 21.7 3.8E+02 0.0082 23.8 6.8 75 23-103 97-173 (227)
39 PTZ00084 40S ribosomal protein 21.2 83 0.0018 27.7 2.6 26 91-116 114-139 (220)
40 KOG2524|consensus 20.8 69 0.0015 29.7 2.1 34 68-108 77-110 (338)
41 cd03131 GATase1_HTS Type 1 glu 20.5 1.4E+02 0.003 25.2 3.7 34 19-52 58-95 (175)
42 smart00102 ADF Actin depolymer 20.4 2.7E+02 0.0058 21.3 5.1 33 60-92 16-48 (127)
43 cd04865 LigD_Pol_like_2 LigD_P 20.2 4.2E+02 0.0092 23.5 6.8 75 23-103 98-174 (228)
44 PRK09330 cell division protein 20.1 92 0.002 29.5 2.8 103 22-138 158-290 (384)
No 1
>KOG2597|consensus
Probab=99.12 E-value=2.3e-11 Score=116.12 Aligned_cols=173 Identities=20% Similarity=0.248 Sum_probs=142.7
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCch-hHhhHHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYD-DVRSYAEAAKKGIA 101 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyD-DVRr~~dAA~~gi~ 101 (203)
--|+|||-..+.+.. .-+.++..+.+... |+..|+...+++.+++.+++.++.+=.+. |++ |+++|..+++++++
T Consensus 24 ~~~~lvVG~~~~~~~--~~~~~~~~~~~~~d-~~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~a~vg~gk~~~~ 99 (513)
T KOG2597|consen 24 KADGLVVGVYSKEGD--KKSKKKTPAGEKFD-DKLGGKLIELIRESGVDGKLGYGRVLELV-DPEYDVVAVVGLGKEGAG 99 (513)
T ss_pred cCceEEEEEechhcc--ccccccccchhhcc-cccccchheeeeccCCCCCcceeeEEEec-CCCcceeehhhhhhhhcC
Confidence 368888877765443 24466777777777 88888999999998877778888777666 555 99999999999999
Q ss_pred HHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCC----------------CccceeEEeeecCCCCC
Q psy6039 102 RALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPE----------------IFPKVKVLGIWSPKLDG 165 (203)
Q Consensus 102 rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~----------------~~~k~~~lGl~~~~~~~ 165 (203)
-..+.+...++..+....++....++.+++..-.+|.|++.||...+ +.....+|.+... +
T Consensus 100 ~~~~~~~~e~~~~v~~a~~~~~~al~~~~~~~~~v~s~~~~~e~aa~g~~l~~~~~~~~~~~~~~~~~~~i~~~~~--~- 176 (513)
T KOG2597|consen 100 PNAKEGLDEGMEFVRVAARFGARALVLALGRLVPVYSPMDYAEQAAEGAALALWRYNRNKSKKNRPSLPKIDLYGS--G- 176 (513)
T ss_pred cchhhhccchhhhhhhhcccchHHHHHhhcceeecccccchHHHhhccccccccccccccccccccccceEEeecC--C-
Confidence 99999999999999999999999999999999999999999998333 2333456667765 3
Q ss_pred cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 166 AGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 166 ~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
+.+...+.+....+|+++||+|+-+.++||.|.+|+|
T Consensus 177 -~~~~~~k~~~~~~~~~~lar~l~d~PaN~Mtp~~fae 213 (513)
T KOG2597|consen 177 -DGEDAWKRGLFKAAAQNLARRLGDTPANRMTPTQFAE 213 (513)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccCChhhcCHHHHHH
Confidence 2245788999999999999999999999999999875
No 2
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=98.83 E-value=2.6e-08 Score=95.11 Aligned_cols=178 Identities=18% Similarity=0.180 Sum_probs=124.7
Q ss_pred cCCCCCCcEEEEEcCCCCCCCCCChhH----HHHHHHH---hhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhH
Q psy6039 18 SLESSDYDGIVLVSNKVPEDAAYPQPI----IKLLQEQ---SKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDV 89 (203)
Q Consensus 18 ~l~~~~~D~vvlV~~~~~~~~~~~~~l----~~~~~~~---~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDV 89 (203)
++.+...|+||+-.. ..+......+ ...++.. ..++...++...+...++ +.+|++|...|+- .+++.
T Consensus 9 ~~~~~~~~~~vv~~~--~~~~~~~~~ld~~~~g~l~~~~~~~~f~gk~ge~~~l~~~~g~~~~~vi~vGlG~~-~~~~~- 84 (483)
T PRK00913 9 SPEKQKSDCLVVGVP--ERLSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAERVLLVGLGKE-EELDE- 84 (483)
T ss_pred CcccccCCEEEEEec--cccchhHHHHhhhhhHHHHHHHHhCCCCCCCCCEEEEecCCCCccceEEEEEeCCc-ccCCH-
Confidence 445556688888653 1221111111 1222222 346666666666666666 8899999999983 36654
Q ss_pred hhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC-Ccch
Q psy6039 90 RSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD-GAGL 168 (203)
Q Consensus 90 Rr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~-~~~~ 168 (203)
+.+..|+.++++.+.+.+++...+.++... .......++.|++.++|..-+.|... ++...+.++.++.. + ..+.
T Consensus 85 ~~~r~a~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eg~~l~~y~f~~~k~~~-~~~~~~~~~~~~~~--~~~~~~ 160 (483)
T PRK00913 85 EQLRKAAGKAARALKKTKVKEAVIFLTELH-TYWKARAAAEGALLGLYRFDKYKSKK-EPRRPLEKLVFLVP--TRLTEA 160 (483)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEecCccC-cHHHHHHHHHHHHHcCccccccCCCC-cccCCccEEEEEcC--CcchHH
Confidence 788889999999998999888877655322 33445678899999999999988752 22335778888764 3 1234
Q ss_pred HHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 169 ESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 169 ~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
+..++.+.++..|...|||+..+-|.+|.|..|||
T Consensus 161 ~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~ 195 (483)
T PRK00913 161 EKAIAHGEAIAEGVNLARDLVNEPPNILTPAYLAE 195 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHH
Confidence 56789999999999999999999999999988764
No 3
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=98.64 E-value=2.9e-07 Score=87.53 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=103.4
Q ss_pred HHHHhhhcccCC--CceEEEEecC-CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCch
Q psy6039 48 LQEQSKIDKGFN--DDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKS 124 (203)
Q Consensus 48 ~~~~~~iD~~~~--~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a 124 (203)
+++..+.....+ .+...++... +.+|+++.++|+.+ +.+.+++.+|+.++++++.+.+...-.+..+. +...
T Consensus 30 l~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~vglg~~~--~~~~~~~r~a~~~~~~~~~~~~~~~~~~~~~~---~~~~ 104 (468)
T cd00433 30 LAALLKASGFKGKAGETLLLPALGGGAKRVALVGLGKEE--DLDVENLRKAAGAAARALKKLGSKSVAVDLPT---LAED 104 (468)
T ss_pred HHHHHHhcCCCCCCCcEEEEccCCCCccEEEEEEeCCch--hcCHHHHHHHHHHHHHHhhhcCceEEEEecCc---chHH
Confidence 455555444433 3444455443 67999999999754 68999999999999999999885543333221 2445
Q ss_pred hHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 125 EVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 125 ~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
...++.|++.+.|..-..|...... +.... +... .....+..++.+.++.+|..+|||++.+-|++|.|..+|+
T Consensus 105 ~~~~~~g~~l~~y~~~~~k~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~ 178 (468)
T cd00433 105 AEAAAEGALLGAYRFDRYKSKKKKT--PLLVV-LELG--NDKAAEAALERGEAIAEGVNLARDLVNTPANDLTPTYLAE 178 (468)
T ss_pred HHHHHHHHHHhccccccccCCccCC--CceeE-Eecc--cchhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCHHHHHH
Confidence 6778899999999999998753322 22111 1112 2223456899999999999999999999999999988764
No 4
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=96.80 E-value=0.0068 Score=59.49 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=90.5
Q ss_pred CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceE-ecCCC-C----CC------C--chhHHHHHhhhhh
Q psy6039 70 PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLL-ALPSD-P----NF------P--KSEVVTLLGAMEG 135 (203)
Q Consensus 70 p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLL-v~~~~-~----~f------~--~a~lva~LGal~a 135 (203)
+.+|+++.-.|.-. +.+.|..|+..+++.+.+.++++-.+ .++.. . .| . +....++.|++.+
T Consensus 83 ~~~rvllvGlG~~~----t~~~~R~a~a~aar~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aeGa~lg 158 (569)
T PTZ00412 83 EERRELFAGMGAKP----TVRDYRLAVTAAVREAKKLNASALVLHSLPQDVFSMGDLFQPPSRLPSHDVVEKTAIFAVTA 158 (569)
T ss_pred CCceEEEEecCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEeccccccccccccccccccchHHHHHHHHHHHHhc
Confidence 46899999999853 57777788888888888889998777 34421 0 11 1 1246777899999
Q ss_pred hcccchhhccCCCC--------------ccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCC
Q psy6039 136 LYTNLQYREFKPEI--------------FPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVI 201 (203)
Q Consensus 136 LYvPLEvRE~~~~~--------------~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprv 201 (203)
+|.-=+.+-....+ ..+...+.++.. + ..+..+..+.++-.|-..|||++.+-|+.|.|..|
T Consensus 159 ~Y~f~~yKs~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~--~--~~~~~~~~g~~ia~~vn~ARdLvn~P~N~ltP~~~ 234 (569)
T PTZ00412 159 AYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVID--S--SNAQAIAAGNIIGHCVNEARNLGNLREDEGVPQFY 234 (569)
T ss_pred ceechhccCCccccccccccccccccccccCcceEEEecC--c--hHHHHHHHHHHHHHHHHHHHHhccCChhhcCHHHH
Confidence 99987776532211 113556666543 2 23466888899999999999999999999999877
Q ss_pred CC
Q psy6039 202 NQ 203 (203)
Q Consensus 202 ae 203 (203)
||
T Consensus 235 Ae 236 (569)
T PTZ00412 235 AE 236 (569)
T ss_pred HH
Confidence 64
No 5
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.67 Score=45.02 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=85.0
Q ss_pred CCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCc
Q psy6039 71 ASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIF 150 (203)
Q Consensus 71 ~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~ 150 (203)
.+|+++...|.-.-+++++|+..-+ +.++++.+-..-+.++.+.-.=....-..++|..+..|.-=..+....+..
T Consensus 66 ~~~~~~vglg~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Y~f~~yk~~k~~~~ 141 (485)
T COG0260 66 VKRVLLVGLGKRKLSEDTLRRAAGA----AARALKKGKAWEVTLLLPELPAAEIAAAAVEGFLLGSYRFDRYKSEKKEPD 141 (485)
T ss_pred cceEEEEeecCCcCCHHHHHHHHHH----HHHHhhcCCceEEEEeccccchHHHHHHHHHHHHhcccchhhccccccccc
Confidence 4899999999987678888876543 455666666555555443221112235567899999995444444432222
Q ss_pred cceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCC
Q psy6039 151 PKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVIN 202 (203)
Q Consensus 151 ~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprva 202 (203)
.+...+-+... .. ..+..++.+.++-+|-..|||+..+=|+-|.|-.+|
T Consensus 142 ~~~~~v~~~~~--~~-~~~~~~~~~~ai~~~v~~aRdLvN~P~n~l~P~~la 190 (485)
T COG0260 142 KELPKVTLLVP--AK-SAEKAIREGEAIAEGVNLARDLVNTPANILTPEELA 190 (485)
T ss_pred cccceEEEecc--ch-hhHHHHHHHHHHHHHHHHHHHHhhCCcccCCHHHHH
Confidence 23667777766 32 334578889999999999999999999999986554
No 6
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=93.23 E-value=0.9 Score=34.33 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=54.6
Q ss_pred hhhcccCCCceEEEEecC-CCCcEEEeccCCCCC-CchhHhhHHHHHHHHHHHHHHcCCCCceEecC-CCCCCCchhHHH
Q psy6039 52 SKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTK-EYDDVRSYAEAAKKGIARALKAGITKPLLALP-SDPNFPKSEVVT 128 (203)
Q Consensus 52 ~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~r-DyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~-~~~~f~~a~lva 128 (203)
..+....|+...+...++ ..+|+|+...|.-+. +. +.+..|+.++++.+.+.+++.=.+.++ +...-......+
T Consensus 32 ~~f~gk~ge~~~l~~~~~~~~~~v~lvGlG~~~~~~~---~~~r~a~~~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~ 108 (126)
T PF02789_consen 32 GDFKGKAGETLLLPGPGGIKAKRVLLVGLGKKEKLTA---ESLRKAGAAAARALKKLKVKSVAIDLPIDGENSDEAAEAA 108 (126)
T ss_dssp TSS--STT-EEEEEEETTTSCSEEEEEEEESCTGBCH---HHHHHHHHHHHHHHHHTT-SEEEEEGCSSBTTCHHHHHHH
T ss_pred CCCCCCCCcEEEEecCCCCCccEEEEEECCCcCcCCH---HHHHHHHHHHHHHHhhCCceEEEEeCcccccCcHHHHHHH
Confidence 444445555555555555 689999999999872 44 445556667777777788888888887 222222666788
Q ss_pred HHhhhhhhccc
Q psy6039 129 LLGAMEGLYTN 139 (203)
Q Consensus 129 ~LGal~aLYvP 139 (203)
+.|++.+.|.=
T Consensus 109 ~~g~~l~~Y~f 119 (126)
T PF02789_consen 109 AEGALLGSYRF 119 (126)
T ss_dssp HHHHHHHT---
T ss_pred HHHHHHcCccC
Confidence 89999999964
No 7
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=61.61 E-value=18 Score=32.20 Aligned_cols=80 Identities=25% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCCCCcEEEEEcCCCCCC-----CCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHh----
Q psy6039 20 ESSDYDGIVLVSNKVPED-----AAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVR---- 90 (203)
Q Consensus 20 ~~~~~D~vvlV~~~~~~~-----~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVR---- 90 (203)
......-+++.+.++.+. ...++...+.|.+..+-=...|-+.-+++|| ....=+||||
T Consensus 31 g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~N------------T~H~~~d~iq~~~~ 98 (230)
T COG1794 31 GGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTN------------TMHKVADDIQKAVG 98 (230)
T ss_pred CCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCC------------cHHHHHHHHHHhcC
Confidence 344556667777777666 5677777888877776666666666666655 3445689999
Q ss_pred ----hHHHHHHHHHHHHHHcCCCCceEe
Q psy6039 91 ----SYAEAAKKGIARALKAGITKPLLA 114 (203)
Q Consensus 91 ----r~~dAA~~gi~rAlkAG~k~PLLv 114 (203)
.+.||+.+.|+++ |+||+.|+
T Consensus 99 iPllhIidaTa~~ik~~---g~kkvgLL 123 (230)
T COG1794 99 IPLLHIIDATAKAIKAA---GAKKVGLL 123 (230)
T ss_pred CCeehHHHHHHHHHHhc---CCceeEEe
Confidence 5778888877776 99999997
No 8
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=56.95 E-value=38 Score=29.77 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=36.5
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchh-HhhHHHHHHHHHHHHHH
Q psy6039 27 IVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDD-VRSYAEAAKKGIARALK 105 (203)
Q Consensus 27 vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDD-VRr~~dAA~~gi~rAlk 105 (203)
++|+|.+.-.-...++...+.+..+.. .++|++|.||-....||++ +++|.+|- ++
T Consensus 3 ~ll~s~~~~~~~~~l~~~~~~~~~~~~----------------~~~~v~fIPtAs~~~~~~~y~~~~~~af----~~--- 59 (233)
T PRK05282 3 LLLLSNSTLPGTGYLEHALPLIAELLA----------------GRRKAVFIPYAGVTQSWDDYTAKVAEAL----AP--- 59 (233)
T ss_pred EEEEecCCCCCCchHHHHHHHHHHHHc----------------CCCeEEEECCCCCCCCHHHHHHHHHHHH----HH---
Confidence 466676544433444555555554433 3678999999887778887 55554443 22
Q ss_pred cCCC
Q psy6039 106 AGIT 109 (203)
Q Consensus 106 AG~k 109 (203)
.|++
T Consensus 60 lG~~ 63 (233)
T PRK05282 60 LGIE 63 (233)
T ss_pred CCCE
Confidence 7887
No 9
>KOG1707|consensus
Probab=55.93 E-value=11 Score=37.93 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=58.4
Q ss_pred EEEEcCCCCCCCCCCh----hHHHHHHHHhhhcccCCCceEEEE-ecC---CCCcEEEeccCCCCCCchhHhhHHHHHHH
Q psy6039 27 IVLVSNKVPEDAAYPQ----PIIKLLQEQSKIDKGFNDDITLLH-SSL---PASRFVYAPTGNMTKEYDDVRSYAEAAKK 98 (203)
Q Consensus 27 vvlV~~~~~~~~~~~~----~l~~~~~~~~~iD~~~~~~~~ll~-~~~---p~~RlI~sPtG~l~rDyDDVRr~~dAA~~ 98 (203)
||||.+..+....... .+.....+|.+||..|+.|.-.+. +.. ..++-|+=||+||- | .+.+....++.+
T Consensus 118 VILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLy-d-a~~qelkp~~v~ 195 (625)
T KOG1707|consen 118 VILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLY-D-AEEQELKPRCVK 195 (625)
T ss_pred EEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCcccc-c-cccccccHHHHH
Confidence 5666664444433333 478889999999999987754443 332 88999999999997 3 478899999999
Q ss_pred HHHHHHHc
Q psy6039 99 GIARALKA 106 (203)
Q Consensus 99 gi~rAlkA 106 (203)
+.+|++|.
T Consensus 196 al~RIFki 203 (625)
T KOG1707|consen 196 ALKRIFKI 203 (625)
T ss_pred HHHHHHhh
Confidence 99999874
No 10
>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase. The formation of S-(hydroxymethyl)glutathione synthase from glutathione and formaldehyde occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification.
Probab=46.78 E-value=6.4 Score=33.72 Aligned_cols=8 Identities=88% Similarity=1.402 Sum_probs=7.0
Q ss_pred CCCcccCC
Q psy6039 190 GTDPERMA 197 (203)
Q Consensus 190 GsDPERMA 197 (203)
|+|||||-
T Consensus 142 ~~~~~~~~ 149 (182)
T TIGR02820 142 GTDPERMD 149 (182)
T ss_pred CCChHHhH
Confidence 79999995
No 11
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=41.32 E-value=65 Score=30.60 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCc---eEEEEecCCCCcEEEeccCCCC-CCchhHhhHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDD---ITLLHSSLPASRFVYAPTGNMT-KEYDDVRSYAE 94 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~---~~ll~~~~p~~RlI~sPtG~l~-rDyDDVRr~~d 94 (203)
+.|.||+|.+-.+.. .. +....++....-=++++. +.+=+ - ..+-+-+..||+|+ -|.++||.+-.
T Consensus 140 ~ADlIiiVld~~~~~-~~---~~~i~~ELe~~GIrlnk~~p~V~I~k-k-~~gGI~i~~t~~l~~~d~~~ir~iL~ 209 (365)
T COG1163 140 NADLIIIVLDVFEDP-HH---RDIIERELEDVGIRLNKRPPDVTIKK-K-ESGGIRINGTGPLTHLDEDTVRAILR 209 (365)
T ss_pred cCCEEEEEEecCCCh-hH---HHHHHHHHHhcCeEecCCCCceEEEE-e-ccCCEEEecccccccCCHHHHHHHHH
Confidence 479999999743221 11 223333343333344433 33333 2 23338889999996 99999998754
No 12
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=41.08 E-value=42 Score=32.91 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=39.7
Q ss_pred CCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCC
Q psy6039 71 ASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDP 119 (203)
Q Consensus 71 ~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~ 119 (203)
...+.++-.|..+.-|.+|+.++++-.+|+++..+. ..||+++..+.
T Consensus 373 ~~~~alal~g~~~~~y~~iq~la~~i~~~~~~~~~~--~~Pliiv~e~D 419 (475)
T PRK10719 373 TDAYALALPGSLPPSYAAIQTLAKALVDGVARFPNK--PHPLIVVAEQD 419 (475)
T ss_pred cCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEccc
Confidence 455778888899999999999999999999998887 56999987543
No 13
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.46 E-value=2.3e+02 Score=25.44 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=55.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcE-EEeccCCCCCCchhHhhHHHHHH
Q psy6039 19 LESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRF-VYAPTGNMTKEYDDVRSYAEAAK 97 (203)
Q Consensus 19 l~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~Rl-I~sPtG~l~rDyDDVRr~~dAA~ 97 (203)
+.+++.|+|++....-+...-..+|-+..++...+. .++|+ |++-||..| .+-|.
T Consensus 34 li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~---------------~~grvpviaG~g~~~---------t~eai 89 (299)
T COG0329 34 LIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA---------------VGGRVPVIAGVGSNS---------TAEAI 89 (299)
T ss_pred HHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH---------------HCCCCcEEEecCCCc---------HHHHH
Confidence 346788999998875443322344444444433321 35666 899999988 33445
Q ss_pred HHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhh
Q psy6039 98 KGIARALKAGITKPLLALPSDPNFPKSEVVTLLGA 132 (203)
Q Consensus 98 ~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGa 132 (203)
+=.+.|.+.|+..=|++.|--.+..+..+.....+
T Consensus 90 ~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ 124 (299)
T COG0329 90 ELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKA 124 (299)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHH
Confidence 55678899999998888775444445554444433
No 14
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.06 E-value=33 Score=29.22 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=43.9
Q ss_pred hHhhHHHHHHHHHHHHHHcCCC----CceEecC-C-----CCCCCchhHHHHHhhhhhhcccchh
Q psy6039 88 DVRSYAEAAKKGIARALKAGIT----KPLLALP-S-----DPNFPKSEVVTLLGAMEGLYTNLQY 142 (203)
Q Consensus 88 DVRr~~dAA~~gi~rAlkAG~k----~PLLv~~-~-----~~~f~~a~lva~LGal~aLYvPLEv 142 (203)
+||-|=|....++++|++.|-. +||.-+. . ...|-+++++|++=++--.|.-.--
T Consensus 97 ~V~~fDEegyaalrKA~R~ged~~~vkplftV~v~h~Ga~~gpwV~sE~lA~~~~~~v~Y~A~~~ 161 (167)
T PF05404_consen 97 EVKFFDEEGYAALRKAQRNGEDVSSVKPLFTVTVNHPGAYKGPWVNSEFLAALLAILVAYFAFTT 161 (167)
T ss_pred EEEEeChHHHHHHHHHhhcCCCcccCCccEEEEEecCccccCCCchHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999876 8998764 2 3478999988888777777765443
No 15
>PF02189 ITAM: Immunoreceptor tyrosine-based activation motif; InterPro: IPR003110 Phosphorylated immunoreceptor signalling motifs (ITAMs) exhibit unique abilities to bind and activate Lyn and Syk tyrosine kinases []. Motif may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery. ; GO: 0004888 transmembrane signaling receptor activity, 0007166 cell surface receptor linked signaling pathway, 0016020 membrane; PDB: 2K4F_A 1TCE_B 3IOZ_B 3IK5_B 1YGR_D 2OQ1_B 1A81_F 2ROL_B.
Probab=36.85 E-value=16 Score=20.96 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=9.0
Q ss_pred hhcccchhhcc
Q psy6039 135 GLYTNLQYREF 145 (203)
Q Consensus 135 aLYvPLEvRE~ 145 (203)
.||+||..|+.
T Consensus 2 ~lYq~L~~~~~ 12 (21)
T PF02189_consen 2 QLYQPLRDRDD 12 (21)
T ss_dssp HHCCTTTGGG-
T ss_pred ccccccccccH
Confidence 68999999986
No 16
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=36.18 E-value=1.7e+02 Score=24.57 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=42.5
Q ss_pred cCCCCCCcEEEEEcCCCCCCCCCChhHHHHHHH-Hhhhcc-------cCCCceEEEEecCCCCcEEEeccCCCCCCchhH
Q psy6039 18 SLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQE-QSKIDK-------GFNDDITLLHSSLPASRFVYAPTGNMTKEYDDV 89 (203)
Q Consensus 18 ~l~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~-~~~iD~-------~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDV 89 (203)
.+++.+-|-+.||+.+-+-....++.++..+.. +..++- .-+..+.++....-.. +.+ ||+ ||.+.
T Consensus 14 ~~~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~-~~~----~L~-d~~~~ 87 (193)
T cd01477 14 DIKNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT-VVA----DLN-DLQSF 87 (193)
T ss_pred ccccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE-EEE----ecc-cccCH
Confidence 457778899999999877765666666666654 333332 2345678877764222 333 355 66444
Q ss_pred hhHHH
Q psy6039 90 RSYAE 94 (203)
Q Consensus 90 Rr~~d 94 (203)
..+.+
T Consensus 88 ~~~~~ 92 (193)
T cd01477 88 DDLYS 92 (193)
T ss_pred HHHHH
Confidence 44433
No 17
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=34.67 E-value=2.3e+02 Score=22.27 Aligned_cols=116 Identities=12% Similarity=0.037 Sum_probs=61.6
Q ss_pred eeccCCCCCCcEEEEEcCCC-CCCCCCChhHHHHHH---------HHhhhcccCC-CceEEEEecC-CCCcEEEeccCCC
Q psy6039 15 TATSLESSDYDGIVLVSNKV-PEDAAYPQPIIKLLQ---------EQSKIDKGFN-DDITLLHSSL-PASRFVYAPTGNM 82 (203)
Q Consensus 15 ~~~~l~~~~~D~vvlV~~~~-~~~~~~~~~l~~~~~---------~~~~iD~~~~-~~~~ll~~~~-p~~RlI~sPtG~l 82 (203)
..-|+.+...|+||--+++. .... .-+...+. +.++.-+.-+ .++.+-..-. |.+.+|..++-..
T Consensus 6 ~~GdI~~~~~DaIVN~an~~~~~~~---ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~~ 82 (137)
T cd02903 6 AKGDIEDETTDVIVNSVNPDLFLLK---GGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPNW 82 (137)
T ss_pred EeCccCCccCCEEEECCCCccCCCC---CCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCCC
Confidence 34678888999988766642 1111 11222221 1122222111 2222222222 7888998876544
Q ss_pred CCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhh
Q psy6039 83 TKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEG 135 (203)
Q Consensus 83 ~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~a 135 (203)
+++ .-..+.++-++.++.|.+.|+|+=.+=....-.|......++--++++
T Consensus 83 ~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~ 133 (137)
T cd02903 83 SNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDE 133 (137)
T ss_pred CCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHH
Confidence 433 456677888888999999999963332223334444444444444443
No 18
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=33.74 E-value=91 Score=25.11 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecC--CCCcEEEeccCCCCCCchhHhhHH
Q psy6039 20 ESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSL--PASRFVYAPTGNMTKEYDDVRSYA 93 (203)
Q Consensus 20 ~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~--p~~RlI~sPtG~l~rDyDDVRr~~ 93 (203)
+|.+..+|++..+.+.. . ...++...+.-.+ +-+.+++... .|.|...|-||.+..|++-.+.+.
T Consensus 51 ~D~~t~~I~ly~E~~~d----~---~~f~~~~~~a~~~--KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~ 117 (138)
T PF13607_consen 51 EDPDTRVIVLYLEGIGD----G---RRFLEAARRAARR--KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAAL 117 (138)
T ss_dssp T-SS--EEEEEES--S-----H---HHHHHHHHHHCCC--S-EEEEE---------------------HHHHHHHH
T ss_pred cCCCCCEEEEEccCCCC----H---HHHHHHHHHHhcC--CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHH
Confidence 47778888888875433 1 5566666666655 7888888754 889999999999998877555444
No 19
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=32.13 E-value=2e+02 Score=22.88 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=48.9
Q ss_pred CceeeeeeccCCC-------CCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecC-CCCcEEEeccC
Q psy6039 9 LPYEVKTATSLES-------SDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSL-PASRFVYAPTG 80 (203)
Q Consensus 9 l~~~~~~~~~l~~-------~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG 80 (203)
||+ +.++-.|.. ..|-++|+|.=| .++ .+++...-+.. .-|.. ...++..++ -|=++|+--+.
T Consensus 9 LP~-vt~~g~F~~~r~~~~l~~~sglv~lDiD--~l~--~ee~~~~r~~l-~~~p~---t~~~f~SpSG~GvKi~v~~~~ 79 (136)
T PF08800_consen 9 LPY-VTPSGTFSGGRNADNLKAYSGLVVLDID--HLD--PEEAEELRQLL-FEDPY---TLAAFVSPSGRGVKIIVPFDY 79 (136)
T ss_pred CCE-EEEEEEECCCcchhhhhhCCCcEEEEeC--CCC--HHHHHHHHHHH-hcCCc---EEEEEEcCCCCeEEEEEEecC
Confidence 665 334444443 467888998843 442 34443333322 22332 255555555 45556665444
Q ss_pred CC----CCCchhHhhHHHHHHHHHHHHHHc
Q psy6039 81 NM----TKEYDDVRSYAEAAKKGIARALKA 106 (203)
Q Consensus 81 ~l----~rDyDDVRr~~dAA~~gi~rAlkA 106 (203)
+- -.++.+.++|-..|.+.+.+-.+.
T Consensus 80 ~~~~~lp~~~~~~~~~h~~~y~~~~~~y~~ 109 (136)
T PF08800_consen 80 PDGSRLPQDEEEAELFHAHAYEAAVEYYQR 109 (136)
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 33 346688899987777777666554
No 20
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=31.23 E-value=1.8e+02 Score=24.86 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecC--CCCcEEEeccCCC-CCCchhHhhHHH
Q psy6039 22 SDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSL--PASRFVYAPTGNM-TKEYDDVRSYAE 94 (203)
Q Consensus 22 ~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~--p~~RlI~sPtG~l-~rDyDDVRr~~d 94 (203)
.+.|++++|.+..+ ..+.+....+....+.-++++....+.+.. .|+ +-+..++++ +-|.++||.+..
T Consensus 76 ~~ad~il~V~D~t~----~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~gg-i~~~~~~~~~~~~~~~v~~~l~ 146 (233)
T cd01896 76 RTADLILMVLDATK----PEGHREILERELEGVGIRLNKRPPNITIKKKKKGG-INITSTVPLTKLDEKTIKAILR 146 (233)
T ss_pred ccCCEEEEEecCCc----chhHHHHHHHHHHHcCceecCCCCeEEEEEEecCC-EEEeccCCCCCCCHHHHHHHHH
Confidence 45799998886321 112333344444444445555444444443 555 444456665 489999999875
No 21
>PF12601 Rubi_NSP_C: Rubivirus non-structural protein; InterPro: IPR022245 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF05407 from PFAM. The Rubella virus (RUB) nonstructural (NS) protein (NSP) ORF encodes a protease that cleaves the NSP precursor (240 kDa) at a single site to produce two products. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity
Probab=31.12 E-value=30 Score=24.66 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=17.3
Q ss_pred Cchh--HhhHHHHHHHHHHHHHHcCCCCc
Q psy6039 85 EYDD--VRSYAEAAKKGIARALKAGITKP 111 (203)
Q Consensus 85 DyDD--VRr~~dAA~~gi~rAlkAG~k~P 111 (203)
-||| |||..|- +|.||--|-+++|
T Consensus 41 yyddlevrrlgdd---amaraalasvqrp 66 (66)
T PF12601_consen 41 YYDDLEVRRLGDD---AMARAALASVQRP 66 (66)
T ss_pred hhhhhhhhhcchH---HHHHHHHHhccCC
Confidence 4666 7998875 4677777777776
No 22
>PRK05805 phosphate butyryltransferase; Validated
Probab=30.20 E-value=1.9e+02 Score=26.20 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhccc-CCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHH
Q psy6039 19 LESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKG-FNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAK 97 (203)
Q Consensus 19 l~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~-~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~ 97 (203)
+.+...|+++ ..... ....++..++.-..+-.. .-++++++..|..++.++++.|| +| -+=|.-...|-+.
T Consensus 87 Vk~GeADa~v--~G~~~----t~~~lr~~l~~~~g~~~~~~~s~~~~~~~p~~~~~l~~tD~~-vn-~~P~~~q~~~I~~ 158 (301)
T PRK05805 87 VSSGKADMVM--KGLVD----TANFLRAVLNKEIGLRTGKTMSHVAVFEVPKYDRLLFLTDAA-FN-IAPDLKEKIDIIN 158 (301)
T ss_pred HHCCCCCEEe--cCccC----HHHHHHHHHHHHhCCCCCCeEEEEEEEEecCCCceEEEECCE-ec-cCcCHHHHHHHHH
Confidence 3466778776 44321 225555555533333211 22457777777667888888887 44 4557778888899
Q ss_pred HHHHHHHHcCCCCceEecCC
Q psy6039 98 KGIARALKAGITKPLLALPS 117 (203)
Q Consensus 98 ~gi~rAlkAG~k~PLLv~~~ 117 (203)
++++.|.+-|..+|=..+..
T Consensus 159 ~a~~~~~~lG~e~PkVA~LS 178 (301)
T PRK05805 159 NAVTVAHAIGIENPKVAPIC 178 (301)
T ss_pred HHHHHHHHcCCCCCeEEEEe
Confidence 99999999999999887654
No 23
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.86 E-value=3.2e+02 Score=24.92 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=75.4
Q ss_pred ccCCCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEE----Eec----C--CCCcEEEec-cCCCCCC
Q psy6039 17 TSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLL----HSS----L--PASRFVYAP-TGNMTKE 85 (203)
Q Consensus 17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll----~~~----~--p~~RlI~sP-tG~l~rD 85 (203)
+.|.+.--|+.|+|++..-.+-...+. +-+++|--.|=| |+| . ..+-+|+.| |..+|
T Consensus 83 t~l~~g~iDaaVivcDgaGTVI~~nP~----------lVQGigGR~SGLv~TtPIpevi~~Ie~~gGiVLd~~tA~ID-- 150 (259)
T TIGR03275 83 TALKSGFIDAAVIVCDGAGTVITTNPA----------LVQGLGGRISGLIETSPIPEVIEKIEDEGGIVLDPDTATID-- 150 (259)
T ss_pred HHHhcCCcceEEEEecCcCeEEeCCHH----------HHhhccceeeeeeeccccHHHHHHHHhcCCEEeCCcccccc--
Confidence 456678889999999865444222222 223444333222 222 1 344478888 78887
Q ss_pred chhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCC
Q psy6039 86 YDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDG 165 (203)
Q Consensus 86 yDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~ 165 (203)
-.+|+++|++.|.|+--.-+.. ++ .-.++||..++..-++.-+|+...+-+.
T Consensus 151 ----------q~~Gv~~Aie~Gyk~IaVTv~~------~~------------~a~~iRe~e~~~~~~~~if~VHtTGis~ 202 (259)
T TIGR03275 151 ----------QIKGVEKAIELGYKKIAVTVAD------AE------------DAKAIRELESESGIDIIIFAVHTTGIDR 202 (259)
T ss_pred ----------HHHHHHHHHHcCCceEEEEecC------HH------------HHHHHHHhccccCCcEEEEEEECCCCCH
Confidence 4689999999999997765442 11 2357888866656678888988874333
Q ss_pred cchHHHHHHHHHH
Q psy6039 166 AGLESVVSAATTL 178 (203)
Q Consensus 166 ~~~~~l~~~a~Al 178 (203)
.+.+.+++.+..+
T Consensus 203 eea~~~~~~aDiv 215 (259)
T TIGR03275 203 EDAEEVVQYADIV 215 (259)
T ss_pred HHHHHHHHhhhHH
Confidence 3445566655433
No 24
>PRK05015 aminopeptidase B; Provisional
Probab=27.53 E-value=28 Score=33.59 Aligned_cols=92 Identities=22% Similarity=0.206 Sum_probs=51.1
Q ss_pred CchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC
Q psy6039 85 EYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD 164 (203)
Q Consensus 85 DyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~ 164 (203)
+-||.|.++.|||+= -.-|++.=-|. ...|.--. --...|..|.|-.-++ |- |.. .+
T Consensus 33 ~~~~~~~iq~a~r~~----~~qg~~~~~l~---g~~w~~~~---~waf~qg~~~~k~~~~-----------~~-~~~-l~ 89 (424)
T PRK05015 33 GKDDLGLIQRAARKL----DGQGIKHVALA---GEGWDLER---CWAFWQGFRTPKGTRK-----------VE-WPD-LD 89 (424)
T ss_pred CCchHHHHHHHHHHh----hcCCcceEEEc---cCCCCHHH---hHHHHhccccCCCCce-----------EE-cCC-CC
Confidence 568999999999862 23455554333 22232111 1122344444433322 22 222 02
Q ss_pred CcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 165 GAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 165 ~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
+ ...+.+++.-.+-..||||..+-|+.|.|..+|+
T Consensus 90 ~----~~~~~l~~~~~~~~~aRdLvn~P~n~ltP~~lA~ 124 (424)
T PRK05015 90 D----AQQQELDARLKIIDWVRDTINAPAEELGPEQLAQ 124 (424)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 2 2234444555566778999999999999987763
No 25
>COG1617 Uncharacterized conserved protein [Function unknown]
Probab=26.85 E-value=29 Score=29.41 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhHHhhhcCC
Q psy6039 171 VVSAATTLESARWVARDIGG 190 (203)
Q Consensus 171 l~~~a~AlEaGR~vARDIgG 190 (203)
..+...|.|+||.+|||+|+
T Consensus 52 a~~Alkaf~sgrniAks~~i 71 (158)
T COG1617 52 AIKALKAFESGRNIAKSLGI 71 (158)
T ss_pred HHHHHHHHHcCCCcccccCh
Confidence 56778899999999999986
No 26
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=26.81 E-value=64 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||.||-|.
T Consensus 15 S~edAv~~Av~~A~kT 30 (66)
T PF07311_consen 15 SWEDAVQNAVARASKT 30 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc
Confidence 5889999999999873
No 27
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=26.09 E-value=61 Score=29.01 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCceEecC
Q psy6039 91 SYAEAAKKGIARALKAGITKPLLALP 116 (203)
Q Consensus 91 r~~dAA~~gi~rAlkAG~k~PLLv~~ 116 (203)
.|.-|++.+|+++++||+|-=-+.|-
T Consensus 119 ~FRRA~k~ai~~~M~aGAkGiki~vS 144 (233)
T COG0092 119 SFRRAMKRAIQRAMRAGAKGIKIQVS 144 (233)
T ss_pred HHHHHHHHHHHHHHHcCCceeEEEEe
Confidence 47789999999999999998877763
No 28
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=26.04 E-value=1.7e+02 Score=26.51 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCcEEEeccC--CCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCch
Q psy6039 70 PASRFVYAPTG--NMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKS 124 (203)
Q Consensus 70 p~~RlI~sPtG--~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a 124 (203)
.|-.=++|..| .|+ |..|+|...|+-.+|+.+-.++|+--|--++.+.+||-+-
T Consensus 127 ~GieG~Lsa~~~~~l~-~~e~p~~~~~~iV~alS~l~~~G~~gpY~LivN~dRy~~l 182 (267)
T COG1659 127 AGIEGILSASSNPALT-LPEDPREIPDVIVQALSELRLAGVDGPYSLLLNADRYTKL 182 (267)
T ss_pred hccceeeccCCCcccc-CccccchHHHHHHHHHHHHHHcccCCceEEEEchhhhheh
Confidence 33333444444 467 9999999999999999999999999998777666666543
No 29
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=25.75 E-value=1.3e+02 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=32.7
Q ss_pred cEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcC--CCCceE
Q psy6039 73 RFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAG--ITKPLL 113 (203)
Q Consensus 73 RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG--~k~PLL 113 (203)
-+.+..|+....+-...+.|.++..+|++.|++.| +.-|+.
T Consensus 87 NiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~ 129 (177)
T cd01681 87 NILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMR 129 (177)
T ss_pred eEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCccc
Confidence 36666677766555678999999999999999999 666765
No 30
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=25.56 E-value=1.5e+02 Score=24.67 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=17.0
Q ss_pred CCCcEEEeccCCCCCCchhHhhHHH
Q psy6039 70 PASRFVYAPTGNMTKEYDDVRSYAE 94 (203)
Q Consensus 70 p~~RlI~sPtG~l~rDyDDVRr~~d 94 (203)
-|+|++++++++.+ .+|-|+.+|
T Consensus 133 ~G~rv~v~~~~~~~--s~~L~~~aD 155 (181)
T COG1432 133 KGKRVEVAGIEPMT--SSDLRNAAD 155 (181)
T ss_pred cCCEEEEEecCCcC--HHHHHHhhc
Confidence 48899999999943 666666555
No 31
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=25.48 E-value=1.5e+02 Score=29.08 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=39.5
Q ss_pred cCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCC
Q psy6039 68 SLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSD 118 (203)
Q Consensus 68 ~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~ 118 (203)
.+....+.++-.|.-|..|.+|+.++++-.+++++.++ ...||+++..+
T Consensus 369 ~~~~~~~Alal~g~~~~~f~~iq~lA~~i~~~~~~~~~--~~~Plivv~e~ 417 (473)
T PF06277_consen 369 EGEDQPVALALPGKPNPSFAEIQELAEAIAEGMAELIN--PDQPLIVVVEQ 417 (473)
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcc--CCCCEEEEECc
Confidence 34566788888899999999999999999999987643 45799988654
No 32
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=24.50 E-value=3e+02 Score=20.50 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=40.0
Q ss_pred CCCcEEEEEcCCCCCCCCCC-hhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 22 SDYDGIVLVSNKVPEDAAYP-QPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 22 ~~~D~vvlV~~~~~~~~~~~-~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
.+||.||+.++..... ..+ ..++..++...+.+ ..++++++--||- ..|+ |..+++.--
T Consensus 44 ~~~d~iilgspty~~g-~~p~~~~~~f~~~l~~~~-------------~~gk~~~vfgt~g--~~~~----f~~~~~~~~ 103 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDE-DLEQDDFEPFFEELEDID-------------LGGKKVALFGSGD--WGYE----FCEAVDDWE 103 (140)
T ss_pred hcCCEEEEEcCCCCCC-CCCcchHHHHHHHhhhCC-------------CCCCEEEEEecCC--CCch----hhHHHHHHH
Confidence 3589999999754321 122 45666666544321 1356555555663 3454 777776655
Q ss_pred HHHHHcCCCC
Q psy6039 101 ARALKAGITK 110 (203)
Q Consensus 101 ~rAlkAG~k~ 110 (203)
++..+.|++.
T Consensus 104 ~~l~~~g~~~ 113 (140)
T TIGR01753 104 ERLKEAGATI 113 (140)
T ss_pred HHHHHCCCEE
Confidence 5555678875
No 33
>PF15050 SCIMP: SCIMP protein
Probab=24.39 E-value=28 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=9.7
Q ss_pred eccCCCCCCchhHh
Q psy6039 77 APTGNMTKEYDDVR 90 (203)
Q Consensus 77 sPtG~l~rDyDDVR 90 (203)
|-+-|.| |||||-
T Consensus 112 syiePe~-DYDDVe 124 (133)
T PF15050_consen 112 SYIEPEN-DYDDVE 124 (133)
T ss_pred cccCccc-cccccc
Confidence 4466777 999984
No 34
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=22.55 E-value=3.4e+02 Score=24.13 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCC--ceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND--DITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~--~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
..|-+|+=-+. .....+..+++.+..+-..+.. -.+..+..|..|==||.|.++-- +|++||.|+.+-.+-+
T Consensus 97 ~PD~lvfDLDP-----~~~~~f~~v~~~A~~~r~~L~~lgL~~~~KTSG~kGlHV~vPl~~~~-~~~~~r~fa~~lA~~l 170 (227)
T cd04862 97 RPDRIVFDLDP-----GPGVPWKAVVEAALLVRELLDELGLESFVKTSGGKGLHVVVPLAPRA-GWDEVKAFAKALAQHL 170 (227)
T ss_pred CCCEEEEECCC-----CCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCC-CHHHHHHHHHHHHHHH
Confidence 45666654442 2223455555555555544442 23455555544556899999954 9999999998877666
Q ss_pred HH
Q psy6039 101 AR 102 (203)
Q Consensus 101 ~r 102 (203)
.+
T Consensus 171 ~~ 172 (227)
T cd04862 171 AR 172 (227)
T ss_pred HH
Confidence 54
No 35
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.38 E-value=3.4e+02 Score=24.35 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCC--ceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND--DITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~--~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
..|-+|+=-+.. ....+..+++.+..+-..+.. -.+..+..|..|==||.|..+- -+||+||+|+.+-.+-+
T Consensus 113 ~PD~lvfDLDP~-----~~~~f~~v~~~A~~~r~~L~~lgL~~f~KTSG~kGlHV~vPl~~~-~~~~~~r~fa~~iA~~l 186 (245)
T TIGR02778 113 KPDRIVFDLDPG-----PGVAWKLVVEAAQLIRELLDELGLESFVKTSGGKGLHVYVPLRPT-LSWDEVKDFAKALAQAL 186 (245)
T ss_pred CCCEEEEECCCC-----CCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEECCCC-CCHHHHHHHHHHHHHHH
Confidence 456666544422 222345555555555444432 2345556664555689999995 49999999998877766
Q ss_pred HHH
Q psy6039 101 ARA 103 (203)
Q Consensus 101 ~rA 103 (203)
.+.
T Consensus 187 ~~~ 189 (245)
T TIGR02778 187 AQQ 189 (245)
T ss_pred HHH
Confidence 653
No 36
>smart00077 ITAM Immunoreceptor tyrosine-based activation motif. Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.
Probab=22.37 E-value=31 Score=20.82 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=9.7
Q ss_pred hhcccchhhcc
Q psy6039 135 GLYTNLQYREF 145 (203)
Q Consensus 135 aLYvPLEvRE~ 145 (203)
.||+||..|+.
T Consensus 2 ~lYQpL~~r~~ 12 (26)
T smart00077 2 QLYQPLNKRQR 12 (26)
T ss_pred ccccccccccH
Confidence 58999999987
No 37
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.75 E-value=4.1e+02 Score=23.57 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCC--ceEEEEecCCCCcEEEeccC-CCCCCchhHhhHHHHHHH
Q psy6039 22 SDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND--DITLLHSSLPASRFVYAPTG-NMTKEYDDVRSYAEAAKK 98 (203)
Q Consensus 22 ~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~--~~~ll~~~~p~~RlI~sPtG-~l~rDyDDVRr~~dAA~~ 98 (203)
...|-+|+=-+.. ....+..+++.+..+-..+.. -.+..+..|..|==||.|.+ +-- +|++||.|+.+-.+
T Consensus 91 e~PD~lvfDLDP~-----~~~~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~-~~~~~r~fa~~iA~ 164 (223)
T cd04866 91 NKPSEIVFDLDPP-----SRDHFSLAVEAANLLKEILDALGLTSFVKTSGNKGLQVYIPLPDNKF-TYDETRLFTEFIAE 164 (223)
T ss_pred CCCCeEEEECCCC-----CCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCC-CHHHHHHHHHHHHH
Confidence 5567766644422 222445555555554444432 24555566645556899998 655 99999999988777
Q ss_pred HHHHH
Q psy6039 99 GIARA 103 (203)
Q Consensus 99 gi~rA 103 (203)
-+.+.
T Consensus 165 ~l~~~ 169 (223)
T cd04866 165 YLCQQ 169 (223)
T ss_pred HHHHH
Confidence 66553
No 38
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=21.70 E-value=3.8e+02 Score=23.81 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCC--ceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND--DITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~--~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
..|-+|+=-+. .....+..+++.+..+-..+.. -.+..+..|.-|==||.|..+-- +|++||.|+.+-.+-+
T Consensus 97 ~PD~lvfDLDP-----~~~~~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~-~~~~~r~fa~~iA~~l 170 (227)
T cd04861 97 RPDRLVFDLDP-----GPGVPFEDVVEAALLLRELLDELGLESFPKTSGGKGLHVYVPLAPRY-TWDEVRAFAKALAREL 170 (227)
T ss_pred CCCEEEEECCC-----CCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCC-CHHHHHHHHHHHHHHH
Confidence 45666654432 2233455666666555555543 24555566645556899999855 8999999999877776
Q ss_pred HHH
Q psy6039 101 ARA 103 (203)
Q Consensus 101 ~rA 103 (203)
.+.
T Consensus 171 ~~~ 173 (227)
T cd04861 171 ARR 173 (227)
T ss_pred HHH
Confidence 654
No 39
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=21.25 E-value=83 Score=27.71 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCceEecC
Q psy6039 91 SYAEAAKKGIARALKAGITKPLLALP 116 (203)
Q Consensus 91 r~~dAA~~gi~rAlkAG~k~PLLv~~ 116 (203)
.|.-|++++|++|++||++-=-+.+.
T Consensus 114 ~FRRa~k~ai~~~m~aGakGikI~iS 139 (220)
T PTZ00084 114 PVRRAAYGVLRHVMESGAKGCEVIVS 139 (220)
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEEc
Confidence 37889999999999999987777663
No 40
>KOG2524|consensus
Probab=20.84 E-value=69 Score=29.70 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.1
Q ss_pred cCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCC
Q psy6039 68 SLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGI 108 (203)
Q Consensus 68 ~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~ 108 (203)
|.-++|.=++--|.+-.-| =|++++|++|++||+
T Consensus 77 p~~~~~y~v~~~gk~YTGY-------falCAAinkAi~aGi 110 (338)
T KOG2524|consen 77 PKHSKRYSVEYKGKLYTGY-------FALCAAINKAIDAGI 110 (338)
T ss_pred CCCCceeeeecCcceehhH-------HHHHHHHHHHHhcCC
Confidence 3366777777777776555 389999999999997
No 41
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=20.52 E-value=1.4e+02 Score=25.19 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEEcCCCCCCCCC----ChhHHHHHHHHh
Q psy6039 19 LESSDYDGIVLVSNKVPEDAAY----PQPIIKLLQEQS 52 (203)
Q Consensus 19 l~~~~~D~vvlV~~~~~~~~~~----~~~l~~~~~~~~ 52 (203)
+...+|||+|+-...++.++-+ .++|...++-.+
T Consensus 58 i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~ 95 (175)
T cd03131 58 IRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAK 95 (175)
T ss_pred ccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHH
Confidence 5688999999999988777522 235666665443
No 42
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=20.39 E-value=2.7e+02 Score=21.28 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcEEEeccCCCCCCchhHhhH
Q psy6039 60 DDITLLHSSLPASRFVYAPTGNMTKEYDDVRSY 92 (203)
Q Consensus 60 ~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~ 92 (203)
....+|.++..+..+++-.+|.-+.+|+|.+..
T Consensus 16 ~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~ 48 (127)
T smart00102 16 HSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEE 48 (127)
T ss_pred ceEEEEEEecCCCEEEEEecCCCCCCHHHHHHh
Confidence 578888898878899999998766789988654
No 43
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.21 E-value=4.2e+02 Score=23.53 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCC--ceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND--DITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~--~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
..|-+|+=-+. .....+..+++.+..+-..+.. -.+..+..|.-|==||.|..+-- +||+||.|+.+-..-+
T Consensus 98 ~PD~lvfDLDP-----~~~~~f~~v~~~A~~vr~~L~~lgL~sf~KTSG~kGlHv~vPl~~~~-~~~~~r~fa~~iA~~l 171 (228)
T cd04865 98 HPDELVIDLDP-----QPGTSFEDVVEVALLVREVLDELGLRGYPKTSGARGLHIYVPIAPRY-TFEEVRRFAELLAREV 171 (228)
T ss_pred CCCEEEEECCC-----CCCCCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCC-CHHHHHHHHHHHHHHH
Confidence 35665554432 1223455555555555544443 24555566644546899999854 9999999999877766
Q ss_pred HHH
Q psy6039 101 ARA 103 (203)
Q Consensus 101 ~rA 103 (203)
.+.
T Consensus 172 ~~~ 174 (228)
T cd04865 172 ERR 174 (228)
T ss_pred HHH
Confidence 653
No 44
>PRK09330 cell division protein FtsZ; Validated
Probab=20.09 E-value=92 Score=29.53 Aligned_cols=103 Identities=16% Similarity=0.305 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCC-CCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHH------
Q psy6039 22 SDYDGIVLVSNKV-PEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAE------ 94 (203)
Q Consensus 22 ~~~D~vvlV~~~~-~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~d------ 94 (203)
...|++|+|.++. ..+....-.+. +.|...|.-+...+.-+. + +|. -.|-+|-||.|||.+..
T Consensus 158 ~~~D~vIvi~Nd~L~~~~~~~~~l~---~Af~~ad~vL~~~v~~It-~-----~i~-~pG~iNvDfaDvk~vm~~~G~a~ 227 (384)
T PRK09330 158 KHVDTLIVIPNDKLLEVVDKKTPLL---DAFKAADDVLRQAVQGIT-D-----LIT-KPGLINLDFADVKTVMSEMGLAM 227 (384)
T ss_pred HHCCEEEEEecHHHHhhccCCCCHH---HHHHHHHHHHHHHHHHHH-H-----HHh-cCCcccCCHHHHHHHHhcCCeEE
Confidence 4579999998741 11111111222 355555654433222111 0 111 24788999999998753
Q ss_pred ----------HHHHHHHHHHHcCCCCceEe-------------cCCCCCCCchhHHHHHhhhhhhcc
Q psy6039 95 ----------AAKKGIARALKAGITKPLLA-------------LPSDPNFPKSEVVTLLGAMEGLYT 138 (203)
Q Consensus 95 ----------AA~~gi~rAlkAG~k~PLLv-------------~~~~~~f~~a~lva~LGal~aLYv 138 (203)
.|..++++|+. +|||- +.-.+...-.+.-.+.-.+++.+-
T Consensus 228 ~G~G~a~g~~ra~~A~~~Ai~----spLl~~~~i~~A~~vLv~I~g~~~l~l~e~~~~~~~i~~~~~ 290 (384)
T PRK09330 228 MGIGEASGEDRAREAAEKAIS----SPLLEDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIREAAD 290 (384)
T ss_pred EEEEEecCccHHHHHHHHHHh----CcCcCCCChhhcceEEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 46677777763 55553 223445666666666666665543
Done!