Query psy6039
Match_columns 203
No_of_seqs 79 out of 81
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 00:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gyt_A Cytosol aminopeptidase; 99.1 2.7E-10 9.3E-15 107.6 11.2 150 50-203 48-205 (503)
2 3h8g_F Cytosol aminopeptidase; 99.1 1.2E-10 4.2E-15 109.8 7.5 182 17-203 8-204 (497)
3 3jru_B Probable cytosol aminop 99.0 7.6E-10 2.6E-14 104.3 9.9 179 17-203 10-200 (490)
4 3pei_A Cytosol aminopeptidase; 98.8 7.6E-09 2.6E-13 97.4 6.4 131 67-203 55-188 (486)
5 1lam_A Leucine aminopeptidase; 98.7 6.9E-08 2.4E-12 90.9 10.3 134 54-203 44-185 (484)
6 3kzw_A Cytosol aminopeptidase; 97.7 0.00013 4.3E-09 69.3 10.0 176 20-203 33-221 (515)
7 3kr4_A M17 leucyl aminopeptida 97.2 0.0034 1.2E-07 59.8 12.2 178 19-202 37-228 (528)
8 2hc9_A Leucine aminopeptidase 90.3 0.11 3.8E-06 49.0 2.2 100 93-203 90-191 (491)
9 3ij3_A Cytosol aminopeptidase; 72.4 1.3 4.4E-05 41.8 1.6 124 54-203 68-191 (482)
10 4efd_A Aminopeptidase; structu 40.3 4 0.00014 38.8 -1.1 32 172-203 197-228 (522)
11 1bvy_F Protein (cytochrome P45 31.7 1.4E+02 0.0047 23.6 6.9 75 22-112 66-140 (191)
12 3mwd_B ATP-citrate synthase; A 30.9 2.7E+02 0.0093 24.4 9.5 60 20-87 220-283 (334)
13 2k87_A Non-structural protein 30.8 1.4E+02 0.0046 23.1 6.3 60 11-78 7-66 (116)
14 3g1w_A Sugar ABC transporter; 29.9 93 0.0032 24.7 5.6 49 93-141 110-160 (305)
15 2cc6_A VNG1446H, dodecin; flav 28.8 33 0.0011 24.1 2.3 16 91-106 15-30 (68)
16 3gkr_A FEMX; FEMX, peptidoglyc 28.6 75 0.0026 26.9 5.1 36 68-108 64-103 (336)
17 2ux9_A Dodecin; flavoprotein; 28.5 33 0.0011 24.1 2.3 16 91-106 17-32 (69)
18 2vxa_A Dodecin; flavoprotein, 27.9 35 0.0012 24.2 2.3 16 91-106 18-33 (72)
19 3onr_A Protein transport prote 27.8 35 0.0012 24.2 2.3 16 91-106 17-32 (72)
20 3qga_A UREA2, fusion of urease 27.7 55 0.0019 28.0 3.9 44 60-110 182-225 (225)
21 2yiz_A Dodecin; flavoprotein, 27.4 36 0.0012 23.9 2.3 16 91-106 17-32 (69)
22 4ac7_B Urease subunit beta; hy 25.9 70 0.0024 25.1 3.9 41 60-109 83-123 (126)
23 4ubp_B Protein (urease (chain 25.9 70 0.0024 25.1 3.9 41 60-109 83-123 (126)
24 4hqf_A Thrombospondin-related 25.4 2.6E+02 0.0089 22.6 7.7 83 10-93 8-93 (281)
25 3l9k_W Dynein intermediate cha 25.3 63 0.0022 20.2 2.9 20 87-106 13-32 (38)
26 1ykg_A SIR-FP, sulfite reducta 22.3 1.5E+02 0.0052 22.3 5.3 71 23-110 56-127 (167)
27 2r91_A 2-keto-3-deoxy-(6-phosp 20.2 3.8E+02 0.013 22.3 8.5 88 21-134 30-118 (286)
No 1
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=99.12 E-value=2.7e-10 Score=107.56 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=114.8
Q ss_pred HHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCC--CCCC--Cch
Q psy6039 50 EQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPS--DPNF--PKS 124 (203)
Q Consensus 50 ~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~--~~~f--~~a 124 (203)
....++.+.|+...+...++ +.+|+++..+|+.+ +| |.++|..|+.++++.+.+.|++.+.+.++. ...+ ...
T Consensus 48 ~~~~f~gk~g~~~~~~~~~~~~~~~v~lvGlG~~~-~~-~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (503)
T 1gyt_A 48 RRGELEGKPGQTLLLHHVPNVLSERILLIGCGKER-EL-DERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWK 125 (503)
T ss_dssp HHTSCCCCTTCEEEEESCTTCSSSEEEEEECCSTT-CC-CHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHH
T ss_pred HhCCCCCCCCCEEEEcCCCCCCccEEEEEEcCchh-hc-CHHHHHHHHHHHHHHHHhcCCceEEEEcccccccccccHHH
Confidence 34556667776555554566 78999999999887 44 578888999999999999999999887763 1222 123
Q ss_pred hHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCC---cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCC
Q psy6039 125 EVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDG---AGLESVVSAATTLESARWVARDIGGTDPERMAPPVI 201 (203)
Q Consensus 125 ~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~---~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprv 201 (203)
...+++|++.++|+.-+.|+...++..++..+.++.. +. ...+..++.+.++.+|..+|||++.+.|++|.|..+
T Consensus 126 ~~~~a~g~~l~~Y~f~~~k~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~laRdL~n~P~N~~tP~~l 203 (503)
T 1gyt_A 126 VRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVP--TRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYL 203 (503)
T ss_dssp HHHHHHHHHHHHCCCCTTCSSCCCCCCCCCEEEEECS--SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHH
T ss_pred HHHHHHHHHHhCccccccccccccccccccEEEEEec--CccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHH
Confidence 4678899999999999998764333345788888875 31 123456788999999999999999999999999877
Q ss_pred CC
Q psy6039 202 NQ 203 (203)
Q Consensus 202 ae 203 (203)
|+
T Consensus 204 A~ 205 (503)
T 1gyt_A 204 AS 205 (503)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 2
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=99.09 E-value=1.2e-10 Score=109.83 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=125.5
Q ss_pred ccCCCCCCcEEEEEcCCCCCCCCCChhHHH----HHH---HHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchh
Q psy6039 17 TSLESSDYDGIVLVSNKVPEDAAYPQPIIK----LLQ---EQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDD 88 (203)
Q Consensus 17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~----~~~---~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDD 88 (203)
..+.+...|++||-......+....+.+.. .+. ....+.-..|+...+...++ +.+|+++..+|+.+ + .|
T Consensus 8 ~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlG~~~-~-~~ 85 (497)
T 3h8g_F 8 VAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDE-A-LG 85 (497)
T ss_dssp SCGGGCCBSCEEEEEEGGGCCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSCEEEEEEESSS-C-BC
T ss_pred CChhhccCCEEEEEEecCCccchHHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccEEEEEECCCcc-c-CC
Confidence 345556678888755432222111111111 111 11334444555544444555 78899999999876 3 46
Q ss_pred HhhHHHHHHHHHHHHHHcCCCCceEecCCC----CCC-CchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCC
Q psy6039 89 VRSYAEAAKKGIARALKAGITKPLLALPSD----PNF-PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKL 163 (203)
Q Consensus 89 VRr~~dAA~~gi~rAlkAG~k~PLLv~~~~----~~f-~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~ 163 (203)
.++|..|+.++++.+.+.|++++.+.++.. ..+ ......+++|++.++|+.-+.|+...+ ..++.+|.++..
T Consensus 86 ~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~aeG~~l~~Y~f~~yks~~~~-~~~l~~l~l~~~-- 162 (497)
T 3h8g_F 86 DRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVE-PRALKKVTLLAD-- 162 (497)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSEEEECCTTCCBTTSCTTTHHHHHHHHHHHHTTCCCCTTCSSCCC-CCSCCEEEEECC--
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecccccccccchhhHHHHHHHHHHHhcCccccccccCccC-CCcccEEEEEcC--
Confidence 788999999999999999999999988642 122 223466899999999999999986433 346788888765
Q ss_pred CC--cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 164 DG--AGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 164 ~~--~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
+. ...+..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~ 204 (497)
T 3h8g_F 163 KAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAE 204 (497)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence 32 12345688899999999999999999999999987763
No 3
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=99.02 E-value=7.6e-10 Score=104.30 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=126.3
Q ss_pred ccCCCCCCcEEEEEcCCCCCCCCCChhHHH----HH---HHHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchh
Q psy6039 17 TSLESSDYDGIVLVSNKVPEDAAYPQPIIK----LL---QEQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDD 88 (203)
Q Consensus 17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~----~~---~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDD 88 (203)
....+...|+|||-......+....+.+.. .+ -....+..+.|+...+...++ +.+|+++...|+-+ +| |
T Consensus 10 ~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~~v~lvGlG~~~-~~-~ 87 (490)
T 3jru_B 10 DAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGDAG-KF-G 87 (490)
T ss_dssp CCTTTCCSSEEEEEECTTSCBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSSSEEEEEECCCGG-GC-S
T ss_pred CCcccccCCEEEEEEeCCCccchhHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEccCCCCCccEEEEEecCCcc-cC-C
Confidence 456667789998866533222111111111 11 122345555565555554556 78999999999876 45 4
Q ss_pred HhhHHHHHHHHHHHHHHcCCCCceEecCCCC----CCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC
Q psy6039 89 VRSYAEAAKKGIARALKAGITKPLLALPSDP----NFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD 164 (203)
Q Consensus 89 VRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~----~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~ 164 (203)
.+.|..|+.++++...+.|++++.+.++... .+......+++|++.++|+.-+.|....++..++++|.++.. +
T Consensus 88 ~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aeg~~l~~Y~f~~yks~~~~~~~~l~~l~l~~~--~ 165 (490)
T 3jru_B 88 VAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGLTTLAIAGD--D 165 (490)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSEEEECGGGSCCTTCCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCSCCEEEEEBC--C
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEECcccccccccHHHHHHHHHHHHHhcccchhhhccCCccccCCccEEEEecC--C
Confidence 7889999999998888889999988876311 222345678899999999999999875434556888888865 3
Q ss_pred CcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 165 GAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 165 ~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
. ..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus 166 ~----~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~ 200 (490)
T 3jru_B 166 A----RALAVGVATAEGVEFARELGNLPPNYCTPAYLAD 200 (490)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence 2 4578889999999999999999999999987763
No 4
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=98.76 E-value=7.6e-09 Score=97.44 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=100.2
Q ss_pred ecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCC-C--CchhHHHHHhhhhhhcccchhh
Q psy6039 67 SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPN-F--PKSEVVTLLGAMEGLYTNLQYR 143 (203)
Q Consensus 67 ~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~-f--~~a~lva~LGal~aLYvPLEvR 143 (203)
.+.+.+|+++...|+-+ ..|.+.|..|+.++++.+.+.|+++..+.++.... . ......+++|++.+.|..-..|
T Consensus 55 l~~~~~~v~lvGlG~~~--~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~aeG~~l~~Y~f~~yk 132 (486)
T 3pei_A 55 LLHGDKIVILLGLGLRQ--DFIASEYDKIIAKAAEQLKKLAIKEISVDIDYAFENDNVKQFTLDTVRALISETYVFDQLK 132 (486)
T ss_dssp ECCSSSEEEEEECCCGG--GCCGGGHHHHHHHHHHHHHHTTCCEEEEECTTSCSSSCHHHHHHHHHHHHHHHTCCCCTTC
T ss_pred EeCCCCeEEEEEcCCcc--cCCHHHHHHHHHHHHHHHhhcCceEEEEEecccccccchHHHHHHHHHHHHHcCccccccc
Confidence 44434999999999853 44678899999999999999999999988764211 1 1123456789999999999988
Q ss_pred ccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 144 EFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 144 E~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
... +..++.++.++.. +..+.+..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus 133 s~~--~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~ 188 (486)
T 3pei_A 133 TEK--ENYSLEQIELVYS--GDQDIEDSAKIGSAIACGQNYAKDLQNLPANICTTDYMLN 188 (486)
T ss_dssp SSC--CCCCCCEEEEECC--SSSCCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred CCC--CCCcccEEEEecC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHH
Confidence 764 2346777887733 2223456788999999999999999999999999987763
No 5
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=98.68 E-value=6.9e-08 Score=90.89 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=97.3
Q ss_pred hcccCCCceEEEEec-CCCCcEEEeccCCCCCCchhHh-------hHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchh
Q psy6039 54 IDKGFNDDITLLHSS-LPASRFVYAPTGNMTKEYDDVR-------SYAEAAKKGIARALKAGITKPLLALPSDPNFPKSE 125 (203)
Q Consensus 54 iD~~~~~~~~ll~~~-~p~~RlI~sPtG~l~rDyDDVR-------r~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~ 125 (203)
+....|+ +.+++.+ +..+|+++...|+-+.+|+|+| ++..|+.++++...+.|++. +.+.. + ...
T Consensus 44 f~gk~g~-~~~~~~~~~~~~~v~lvGlG~~~~~~~~~~~~~~~~~~~r~a~~~~~~~l~~~~~~~--~~~~~---~-~~~ 116 (484)
T 1lam_A 44 PPLKAGK-TRTFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPS--VEVDP---C-GDA 116 (484)
T ss_dssp SCCCTTC-EEEEEEEETTEEEEEEEECCCTTCCEETTTTEEHHHHHHHHHHHHHHHHHHHTTCSE--EEECC---T-TCH
T ss_pred CCCCCCc-EEEEeCCCCCcCEEEEEEeCcchhcccchhccccCHHHHHHHHHHHHHHHhhcCCeE--EEeCC---c-hHH
Confidence 3333444 4445443 3568999999999988887765 67889999998888889874 33321 1 224
Q ss_pred HHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 126 VVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 126 lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
..+++|++.++|+.-+.|+... +...+.++.. . .+..++.+.++.+|..+|||++.+.|++|.|..+|+
T Consensus 117 ~~~a~G~~l~~Y~f~~~k~~~~----~~~~~~~~~~--~---~~~~~~~~~~~a~~~~laRdLvn~P~N~~tP~~lA~ 185 (484)
T 1lam_A 117 QAAAEGAVLGLYEYDDLKQKRK----VVVSAKLHGS--E---DQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAE 185 (484)
T ss_dssp HHHHHHHHHHHCCCCTTCSSCC----CCCEEEESSS--S---CHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHHHhCcccCccccCCC----CCceEEEecc--h---hHHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHH
Confidence 5789999999999988885422 2345666543 2 234578889999999999999999999999987763
No 6
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=97.73 E-value=0.00013 Score=69.32 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=108.7
Q ss_pred CCCCCcEEEEEcCCC-CCCC---CCChhHHHH---HHHHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhHhh
Q psy6039 20 ESSDYDGIVLVSNKV-PEDA---AYPQPIIKL---LQEQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRS 91 (203)
Q Consensus 20 ~~~~~D~vvlV~~~~-~~~~---~~~~~l~~~---~~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr 91 (203)
.....|++|+-.... .... ...+.+... +.+...+....|+..+++...+ ..+||++.-.|... ++ +.+.
T Consensus 33 ~~~~~d~lvig~~~~~~~~~~~~~~Deal~g~L~~l~~~~~F~gk~G~~~~~~~~~~~~~~rvllvGlGk~~-~~-~~~~ 110 (515)
T 3kzw_A 33 LSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGNLK-TR-SYQD 110 (515)
T ss_dssp CCTTCCEEEEEEESCGGGSCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEEEEEETTEEEEEEEEEEECST-TC-CHHH
T ss_pred CCCCCCEEEEEEeCCcccccchHHHHHHHHHHHHHHHhcCccCCCCCCeEEEEecCCCCcCEEEEEEcCCcc-cC-CHHH
Confidence 446789998876644 2221 112222223 4444455556677665554434 78999999999865 33 2344
Q ss_pred HHHHHHHHHHHHHHcCCCCceEecCC--CCCCCchh--HHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcc
Q psy6039 92 YAEAAKKGIARALKAGITKPLLALPS--DPNFPKSE--VVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAG 167 (203)
Q Consensus 92 ~~dAA~~gi~rAlkAG~k~PLLv~~~--~~~f~~a~--lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~ 167 (203)
|.+|+.+.++.+.+.+++.=.+.++. ........ ....+|+..+.|.==..|....+ .....|-+... . .
T Consensus 111 ~r~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Y~f~~yks~~~~--~~~~~l~~~~~--~--~ 184 (515)
T 3kzw_A 111 MLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKA--PFKTNLNLISE--S--L 184 (515)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGGGTCCSSSCHHHHHHHHHHHHHHTTCCCCTTCTTCCC--CCCEEEEEECS--S--C
T ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccccccCHHHHHHHHHHHHHhCceecccccCCCCC--CcceEEEEcCc--c--h
Confidence 45556666666677788777777653 22222222 34467788899987666644221 12233444322 2 2
Q ss_pred hH-HHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 168 LE-SVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 168 ~~-~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
.+ ..++.+.++-+|-.+|||++.+-|+.|.|..+|+
T Consensus 185 ~~~~~~~~~~~~a~~~~~aRdL~n~P~n~ltP~~~a~ 221 (515)
T 3kzw_A 185 IELDFIHEGISIGQSINLARDFSNMPPNVLTPQTFAE 221 (515)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 22 4578888999999999999999999999987763
No 7
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=97.19 E-value=0.0034 Score=59.78 Aligned_cols=178 Identities=8% Similarity=0.071 Sum_probs=105.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCC--------hhHHHHHHHH--hhhcccCCCceEEEEecC---CCCcEEEeccCCCCCC
Q psy6039 19 LESSDYDGIVLVSNKVPEDAAYP--------QPIIKLLQEQ--SKIDKGFNDDITLLHSSL---PASRFVYAPTGNMTKE 85 (203)
Q Consensus 19 l~~~~~D~vvlV~~~~~~~~~~~--------~~l~~~~~~~--~~iD~~~~~~~~ll~~~~---p~~RlI~sPtG~l~rD 85 (203)
-|+-.-|.+|+...+...+.... ..|+..++.. ..+.-..|+...+ +.++ ..+||++...|.-. +
T Consensus 37 ~~~~~~~l~Vv~V~e~~~l~G~ak~lD~as~G~Is~llk~G~~~~f~Gk~g~~~~l-~~~~~~~~~~rvllVGlGk~~-~ 114 (528)
T 3kr4_A 37 GCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHF-YMFNDNKNSVAVGYVGCGSVA-D 114 (528)
T ss_dssp CBCCCSSEEEEEECCSSSTTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEE-EEECTTSCEEEEEEEECCSCS-S
T ss_pred cccCCCCeEEEEecCCcccCccHHHHHHHHHHHHHHHHHcCCcCcceeCCCCEEEE-ecCCCCCCccEEEEEECCCcc-c
Confidence 34445567777655444443211 2333444432 2344445555544 4432 45789999999864 3
Q ss_pred chhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCC-CccceeEEeeecCCCC
Q psy6039 86 YDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPE-IFPKVKVLGIWSPKLD 164 (203)
Q Consensus 86 yDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~-~~~k~~~lGl~~~~~~ 164 (203)
+ +.+.|..|+.++++...+.+.+.=.+.++... -......++-|++...|.-=..+....+ +..+++.+.++.. +
T Consensus 115 l-~~~~~r~a~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~eg~~l~~y~f~~yks~~~~~~~~~l~~~~~~~~--~ 190 (528)
T 3kr4_A 115 L-SEADMKRVVLSLVTMLHDNKLSKLTVVFEINV-DKNLFRFFLETLFYEYMTDERFKSTDKNVNMEYIKHLGVYIN--N 190 (528)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCCSEEEEEECSCC-CHHHHHHHHHHHHHHHCCCCTTCSTTCCC-CCCCSEEEEEET--T
T ss_pred C-CHHHHHHHHHHHHHHHhhcCccEEEEeccCCC-cHHHHHHHHHHHHhhhccccccccCCCcccccCceEEEEEeC--C
Confidence 3 23455566666666666777777444443211 1122234556777777765555433221 1235677777765 3
Q ss_pred CcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCC
Q psy6039 165 GAGLESVVSAATTLESARWVARDIGGTDPERMAPPVIN 202 (203)
Q Consensus 165 ~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprva 202 (203)
....+..++.+.++-+|-.+|||+..+=|.-|.|-.+|
T Consensus 191 ~~~~~~~~~~~~~~a~~v~laRdLvn~P~N~ltP~~lA 228 (528)
T 3kr4_A 191 ADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLS 228 (528)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCHHHHH
Confidence 33445678899999999999999999999999997665
No 8
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=90.27 E-value=0.11 Score=49.03 Aligned_cols=100 Identities=7% Similarity=-0.131 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcC--CCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHH
Q psy6039 93 AEAAKKGIARALKAG--ITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLES 170 (203)
Q Consensus 93 ~dAA~~gi~rAlkAG--~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~ 170 (203)
.|..++.|+.|...| .....+++.. + + .++..|+..+.+.|+--|..... .....++-++.. .. . +.
T Consensus 90 ~~~~~e~vr~a~~~g~~~~~~~v~v~~---~--~-e~~a~~~a~~~~~~~f~~k~~~~-~~~~~~~~~~~~--~~-~-~~ 158 (491)
T 2hc9_A 90 AHSIYKELKPINYPEDTKNVHFVLFAE---Y--P-DVLSHVAAIARTFCKFSMKTSGI-RELNVNIDVVCD--KL-T-NE 158 (491)
T ss_dssp HHHHHHHHTTCCCCTTCCEEEEEEECC---G--G-GHHHHHHHHHTTSCCCCCCSSCC-CCCEEEEEEECT--TC-C-HH
T ss_pred HHHHHHHHHHHhcccCcCCceEEEEcC---c--h-hHHHHHHHHHHhccchhcccccC-CCCCceeeeccC--cc-c-HH
Confidence 456666777776666 3334444422 2 2 25667776666777655544332 223445666533 11 1 23
Q ss_pred HHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 171 VVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 171 l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
-++.+.++-+|-..|||+.++.|++|.|..||+
T Consensus 159 ~~~~~~~~a~~~~~aR~L~n~P~n~~tP~~~a~ 191 (491)
T 2hc9_A 159 DAVFLTDLSESVRETARLIDTPANILTTDALVD 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhCCHHHHHH
Confidence 456667888888999999999999999988764
No 9
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=72.35 E-value=1.3 Score=41.78 Aligned_cols=124 Identities=20% Similarity=0.158 Sum_probs=73.0
Q ss_pred hcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhh
Q psy6039 54 IDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAM 133 (203)
Q Consensus 54 iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal 133 (203)
+..+.|+ +.+++.+....++++.-.|.-. + |. |+ ....|+|+.|..+ +.+.. ..-......+++|++
T Consensus 68 f~gk~G~-~~~lp~~~g~~~~~lvGlG~~~----~-r~---a~-g~~ar~L~~g~~~--~~~~~-~~~~~~~~~~aeG~~ 134 (482)
T 3ij3_A 68 FVGLAGT-ICSIPESTGALQRVLLGVSDYE----Y-SW---DF-GGLSKVLPPGAFQ--LNRDD-FEDDEYYERALLAFG 134 (482)
T ss_dssp CCCCTTC-EEEEECTTSSEEEEEEECSSTT----C-CG---GG-GGHHHHCCSEEEE--CCGGG-SSSHHHHHHHHHHHH
T ss_pred CCCCCCC-EEEEecCCCceEEEEEEeCChh----H-HH---HH-HHHHHhcccCcEE--Eeccc-cCChHHHHHHHHHHH
Confidence 4444443 4455544333468899999743 2 42 22 3335566655422 11110 000112346789999
Q ss_pred hhhcccchhhccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 134 EGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 134 ~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
-+.|.--..|.... .+ .+| ... +. .. +.+.++-+|..+|||+..+-|+.|.|..+|+
T Consensus 135 Lg~Y~f~~yks~~~---~~-~~l--~~~--~~---~~--~~~~~~a~~~~laRdLvn~P~N~~tP~~~A~ 191 (482)
T 3ij3_A 135 LGSYQFNAYRKRSP---YL-AKL--FLP--QA---HR--KRVTDWLTTIYLIRDLINTPAEDMGPSELAQ 191 (482)
T ss_dssp HTTCCCCSSSCCCC---CS-EEE--ECC--HH---HH--HHHHHHHHHHHHHHHHHHSCGGGSSHHHHHH
T ss_pred hcceecccccCCCC---CC-cEE--Eec--ch---hH--HHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 99998776665422 12 233 223 21 12 6778999999999999999999999987763
No 10
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=40.31 E-value=4 Score=38.83 Aligned_cols=32 Identities=3% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039 172 VSAATTLESARWVARDIGGTDPERMAPPVINQ 203 (203)
Q Consensus 172 ~~~a~AlEaGR~vARDIgGsDPERMApprvae 203 (203)
.+.+.++-+|..+|||+..+-|+.|.|..+|+
T Consensus 197 ~~~~~~ia~~~~laRdLvn~P~N~~tP~~lA~ 228 (522)
T 4efd_A 197 PKDLEAVATSTQLCQRLVDAPPNLLTTATFTE 228 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhCCHHHHHH
Confidence 35667999999999999999999999987753
No 11
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=31.74 E-value=1.4e+02 Score=23.64 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHH
Q psy6039 22 SDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIA 101 (203)
Q Consensus 22 ~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~ 101 (203)
..+|.||+++... . ...++.....++........ ...++++.+--.| |+.|.| .|..|++.--+
T Consensus 66 ~~~d~vi~g~~Ty-~-G~~p~~~~~fl~~L~~~~~~----------~l~~~~~avfG~G--ds~y~~--~f~~a~~~l~~ 129 (191)
T 1bvy_F 66 PREGAVLIVTASY-N-GHPPDNAKQFVDWLDQASAD----------EVKGVRYSVFGCG--DKNWAT--TYQKVPAFIDE 129 (191)
T ss_dssp CSSSEEEEEECCB-T-TBCCTTTHHHHHHHHTCCSS----------CCTTCCEEEEEEE--CTTSGG--GTTHHHHHHHH
T ss_pred hhCCeEEEEEeec-C-CCcCHHHHHHHHHHHhccch----------hhCCCEEEEEEcc--CCchhh--hHhHHHHHHHH
Confidence 3589999999865 2 34566666666665443211 0124444444556 567853 67778887777
Q ss_pred HHHHcCCCCce
Q psy6039 102 RALKAGITKPL 112 (203)
Q Consensus 102 rAlkAG~k~PL 112 (203)
+..+.|+++-.
T Consensus 130 ~L~~~Ga~~v~ 140 (191)
T 1bvy_F 130 TLAAKGAENIA 140 (191)
T ss_dssp HHHTTTCCCCE
T ss_pred HHHHCCCeEee
Confidence 77778998754
No 12
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=30.85 E-value=2.7e+02 Score=24.37 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecC--C--CCcEEEeccCCCCCCch
Q psy6039 20 ESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSL--P--ASRFVYAPTGNMTKEYD 87 (203)
Q Consensus 20 ~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~--p--~~RlI~sPtG~l~rDyD 87 (203)
.|.+.++|+++.. .. ...+ ...++..++ .+.+|-+.++++-. + +.+.-.+-||.+-.++.
T Consensus 220 ~Dp~T~~I~l~gE-i~----g~~e-~~~~~~~r~--~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~ 283 (334)
T 3mwd_B 220 DTPGVKMIVVLGE-IG----GTEE-YKICRGIKE--GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQAS 283 (334)
T ss_dssp TCTTCCEEEEEEE-SS----SSHH-HHHHHHHHT--TSCCSCEEEEEECTTCC----------------CGG
T ss_pred cCCCCCEEEEEEe-cC----ChHH-HHHHHHHHh--hcCCCCEEEEEcCCCcccccccccccchhhhccCCC
Confidence 3788899999954 11 1222 334444433 34677788887744 4 56888999999987765
No 13
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=30.76 E-value=1.4e+02 Score=23.09 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=46.6
Q ss_pred eeeeeeccCCCCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEec
Q psy6039 11 YEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAP 78 (203)
Q Consensus 11 ~~~~~~~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sP 78 (203)
..+++...+.++.||...||.+ ...|.+-+.+-..+|+....+.++-.-|...|-+|.++
T Consensus 7 I~~~p~~~l~g~~Y~NF~Lvg~--------~~~ia~~~N~~lgf~k~~~~~lk~T~~P~~~GDVVl~~ 66 (116)
T 2k87_A 7 IDLVPTQPLPNASFDNFKLTCS--------NTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAID 66 (116)
T ss_dssp SSCEECCCCTTCBCCSEEEEES--------SHHHHHHHHHHTTCCSSCSEEEEEEETTCCCSSEEEEE
T ss_pred ceeecccccCCcceeceEEEeC--------cHHHHHHHHHHhCCCCCCceEEEEEECCCCCCCEEEee
Confidence 4467777888899999999984 34577888888888888866666666677678899886
No 14
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.93 E-value=93 Score=24.71 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHc--CCCCceEecCCCCCCCchhHHHHHhhhhhhcccch
Q psy6039 93 AEAAKKGIARALKA--GITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQ 141 (203)
Q Consensus 93 ~dAA~~gi~rAlkA--G~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLE 141 (203)
.++++.+.+..++. |.++-+++..+........+-++.-++++.+.+++
T Consensus 110 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~ 160 (305)
T 3g1w_A 110 YNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIE 160 (305)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCE
Confidence 56888888888998 99988877654322222235556666666554443
No 15
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=28.83 E-value=33 Score=24.06 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||.||-|.
T Consensus 15 S~edAi~nAi~~AskT 30 (68)
T 2cc6_A 15 SFTAAADDAIDRAEDT 30 (68)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5789999999999873
No 16
>3gkr_A FEMX; FEMX, peptidoglycan, hexapeptide, transferase, transferase- transferase product complex; HET: UMA; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A
Probab=28.61 E-value=75 Score=26.87 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=23.1
Q ss_pred cC-CCCcEEEeccCCCCCCchh---HhhHHHHHHHHHHHHHHcCC
Q psy6039 68 SL-PASRFVYAPTGNMTKEYDD---VRSYAEAAKKGIARALKAGI 108 (203)
Q Consensus 68 ~~-p~~RlI~sPtG~l~rDyDD---VRr~~dAA~~gi~rAlkAG~ 108 (203)
+. .+.++.|.|-||+- ||.| +..+.+++++ |.+-|+
T Consensus 64 ~~~~g~~~~y~~~Gpv~-d~~~~~~~~~~~~~l~~----~~~~~~ 103 (336)
T 3gkr_A 64 DTPTDKKFAYASKGPVM-DVTDVDLLDRLVDEAVK----ALDGRA 103 (336)
T ss_dssp CCSSSSEEEEETTCCBS-CTTCHHHHHHHHHHHHH----HHTTCE
T ss_pred ecCCCcEEEEECCCCcc-CCCcHHHHHHHHHHHHH----HHHCCE
Confidence 44 57789999999997 6655 4444444433 455554
No 17
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=28.54 E-value=33 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||.||-|.
T Consensus 17 S~edAi~nAi~~AskT 32 (69)
T 2ux9_A 17 GLEAAIQAALARARKT 32 (69)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5789999999999763
No 18
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=27.86 E-value=35 Score=24.20 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||.||-|.
T Consensus 18 S~edAi~nAi~~AskT 33 (72)
T 2vxa_A 18 GIEEAVNNAIARAGET 33 (72)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 5789999999999773
No 19
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=27.79 E-value=35 Score=24.21 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||+||-|.
T Consensus 17 S~edAi~nAi~~AskT 32 (72)
T 3onr_A 17 SWEQAAAEAVQRARDS 32 (72)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5789999999999873
No 20
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=27.68 E-value=55 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.1
Q ss_pred CceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCC
Q psy6039 60 DDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITK 110 (203)
Q Consensus 60 ~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~ 110 (203)
++|.|++. .|.|.||-.-|-++...|+- +..++++||.+.|+++
T Consensus 182 k~V~LV~~--gG~r~v~G~~gl~~G~ld~~-----~~~~al~r~~~~GF~k 225 (225)
T 3qga_A 182 KTVHLIPI--GGSKKIIGMNGLLNGIADDL-----HKQKALEKAKHHGFIK 225 (225)
T ss_dssp EEEEEEEC--STTCEECSTTSSCCEECSHH-----HHHHHHHHHHHTTSCC
T ss_pred eEEEEEEc--cCCeEEeCCCccCCCcCChH-----HHHHHHHHHHHccCCC
Confidence 45555555 48999999999998877653 4678899999999875
No 21
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=27.44 E-value=36 Score=23.93 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHc
Q psy6039 91 SYAEAAKKGIARALKA 106 (203)
Q Consensus 91 r~~dAA~~gi~rAlkA 106 (203)
+|-||+++||.||-|.
T Consensus 17 S~edAi~nAi~~AskT 32 (69)
T 2yiz_A 17 GVDAAIQGGLARAAQT 32 (69)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5789999999999763
No 22
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=25.91 E-value=70 Score=25.05 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCC
Q psy6039 60 DDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGIT 109 (203)
Q Consensus 60 ~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k 109 (203)
++|.|++. .|.|.||-.-|-++...|+-+ +.++||.+.|++
T Consensus 83 k~V~LV~~--~G~r~v~G~~gl~~G~ld~~~-------~~l~r~~~~GF~ 123 (126)
T 4ac7_B 83 MEVELTEL--GGNREVFGISDLTNGSVDNKE-------LILQRAKELGYK 123 (126)
T ss_dssp EEEEEEEC--CTTCEECSTTTSCSEETTCHH-------HHHHHHHHHTCT
T ss_pred EEEEEEEc--cCCeEEeCcCcccCCccCcHH-------HHHHHHHHcCCc
Confidence 45555555 489999999998887777643 788999999976
No 23
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=25.91 E-value=70 Score=25.05 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCC
Q psy6039 60 DDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGIT 109 (203)
Q Consensus 60 ~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k 109 (203)
++|.|++. .|.|.||-.-|-++...|+-+ +.++||.+.|++
T Consensus 83 k~V~LV~~--~G~r~v~G~~gl~~G~ld~~~-------~~l~r~~~~GF~ 123 (126)
T 4ubp_B 83 MEVELTEL--GGNREVFGISDLTNGSVDNKE-------LILQRAKELGYK 123 (126)
T ss_dssp EEEEEEEC--CTTCEECSTTTSCSEETTCHH-------HHHHHHHHHTCT
T ss_pred EEEEEEEc--cCCeEEeCcCcccCCccCcHH-------HHHHHHHHcCCc
Confidence 45555555 489999999998887777643 788999999976
No 24
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=25.38 E-value=2.6e+02 Score=22.60 Aligned_cols=83 Identities=10% Similarity=-0.014 Sum_probs=39.9
Q ss_pred ceeeeeeccCCCCCCcEEEEEcCCCCCCCCCC-hhHHHHHHHH-hhhccc-CCCceEEEEecCCCCcEEEeccCCCCCCc
Q psy6039 10 PYEVKTATSLESSDYDGIVLVSNKVPEDAAYP-QPIIKLLQEQ-SKIDKG-FNDDITLLHSSLPASRFVYAPTGNMTKEY 86 (203)
Q Consensus 10 ~~~~~~~~~l~~~~~D~vvlV~~~~~~~~~~~-~~l~~~~~~~-~~iD~~-~~~~~~ll~~~~p~~RlI~sPtG~l~rDy 86 (203)
+-.+......+....|.++||+.+-+.....+ +.++..+..+ .+++.. -+..+.++.... .-+.++..+-.-+.+-
T Consensus 8 ~d~i~~~~~~C~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~-~~~~~~~l~~~~~~~~ 86 (281)
T 4hqf_A 8 VDEIKYREEVCNDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSN-NAREIIRLHSDASKNK 86 (281)
T ss_dssp --------CCSCSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEET-TEEEEEEECSSCSSCH
T ss_pred cccccCchHhCCCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCC-CceEEEEccccCccCH
Confidence 34455556677789999999999876643222 3344444443 222211 133577777654 2345554444433344
Q ss_pred hhHhhHH
Q psy6039 87 DDVRSYA 93 (203)
Q Consensus 87 DDVRr~~ 93 (203)
+++....
T Consensus 87 ~~l~~~i 93 (281)
T 4hqf_A 87 EKALIII 93 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554333
No 25
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=25.25 E-value=63 Score=20.24 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.8
Q ss_pred hhHhhHHHHHHHHHHHHHHc
Q psy6039 87 DDVRSYAEAAKKGIARALKA 106 (203)
Q Consensus 87 DDVRr~~dAA~~gi~rAlkA 106 (203)
+|-..|.+-+.+-|.|||.-
T Consensus 13 ~~F~~F~~rsskviERAL~e 32 (38)
T 3l9k_W 13 ENFQRFVVRAGRVIERALSE 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 57789999999999999964
No 26
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=22.31 E-value=1.5e+02 Score=22.25 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhHhhHHHHHHHHHH
Q psy6039 23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIA 101 (203)
Q Consensus 23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~ 101 (203)
+||.||+++..... ...+..++..++...... .+. .++++.+--+| |+.|+ .|.+|++.--+
T Consensus 56 ~~d~ii~g~pt~g~-G~~p~~~~~f~~~l~~~~-----------~~~l~~k~~avfg~G--~~~y~---~~~~a~~~l~~ 118 (167)
T 1ykg_A 56 SEKLLIVVTSTQGE-GEPPEEAVALHKFLFSKK-----------APKLENTAFAVFSLG--DTSYE---FFCQSGKDFDS 118 (167)
T ss_dssp GCSEEEEEEECBGG-GBCCGGGHHHHHHHTSTT-----------CCCCTTCEEEEEEEC--CTTSS---STTHHHHHHHH
T ss_pred cCCeEEEEEcccCC-CcCChhHHHHHHHHHhcc-----------ccccCCCEEEEEeec--CCCHH---HHHHHHHHHHH
Confidence 58999999975411 134555666666543311 011 35555555667 55674 36666666555
Q ss_pred HHHHcCCCC
Q psy6039 102 RALKAGITK 110 (203)
Q Consensus 102 rAlkAG~k~ 110 (203)
+..+.|++.
T Consensus 119 ~l~~~G~~~ 127 (167)
T 1ykg_A 119 KLAELGGER 127 (167)
T ss_dssp HHHHHTCEE
T ss_pred HHHHCCCeE
Confidence 666678764
No 27
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.23 E-value=3.8e+02 Score=22.32 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=52.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHH
Q psy6039 21 SSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI 100 (203)
Q Consensus 21 ~~~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi 100 (203)
+++.|+|++....-+...=..++-+..++...+.-+ + |++.||..+ .+-+.+=.
T Consensus 30 ~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~---------------g--vi~Gvg~~~---------t~~ai~la 83 (286)
T 2r91_A 30 SKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAAR---------------R--VIVQVASLN---------ADEAIALA 83 (286)
T ss_dssp HTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCS---------------S--EEEECCCSS---------HHHHHHHH
T ss_pred HCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---------------C--EEEeeCCCC---------HHHHHHHH
Confidence 678999988776443332244555555555543311 1 678888876 23344556
Q ss_pred HHHHHcCCCCceEecCCCCC-CCchhHHHHHhhhh
Q psy6039 101 ARALKAGITKPLLALPSDPN-FPKSEVVTLLGAME 134 (203)
Q Consensus 101 ~rAlkAG~k~PLLv~~~~~~-f~~a~lva~LGal~ 134 (203)
+.|.++|+..=|++.|--.+ ..+..++...-++.
T Consensus 84 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va 118 (286)
T 2r91_A 84 KYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLC 118 (286)
T ss_dssp HHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHH
Confidence 77888999876666553333 45566666555543
Done!