RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6039
(203 letters)
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 42.3 bits (100), Expect = 4e-05
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 56 KGFNDDITLLH--SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLL 113
G LL L A R + +G E R++ + +L
Sbjct: 53 AGKPGQTLLLQNLQGLKAERVLLVGSGK--DEALGDRTWRKLVASVAGVLKGLNGADAVL 110
Query: 114 ALPSDPNFPKSEVVTLL-----GAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGL 168
AL + ++G Y +++ + +K + + + K A +
Sbjct: 111 ALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKS-QKVEPRALKKVTLLADKAGQAEV 169
Query: 169 ESVVSAATTLESARWVARDIGGTDPERMAP 198
E V A+ + + RD+G P P
Sbjct: 170 ERAVKHASAIATGMAFTRDLGNLPPNLCHP 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 7e-05
Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 36/211 (17%)
Query: 3 LP-PGQNLPYEVKTATSLE-SSDYDGIVLVSNKV-PEDAAYPQPIIKL-LQEQSKIDKGF 58
LP P + + + T E + G VS+ V P ++ L L E + +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTE---FENCY 95
Query: 59 --NDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALP 116
+DI H+ A++ + + K + +++Y A+ R L
Sbjct: 96 LEGNDI---HAL--AAKLLQENDTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAV 149
Query: 117 SDPNFPKSEVVTLL---GAMEGLYTNLQ--YREFKPEIFPKVKVLGIWSPKLDGAGLESV 171
+ N +++V + G + + L+ Y+ + + +K L +
Sbjct: 150 GEGN---AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS--------AETLSEL 198
Query: 172 VSAATTLESARWVARDIGG--TDPERMAPPV 200
+ E +I +P P
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSN-TPDK 228
Score = 36.6 bits (84), Expect = 0.004
Identities = 47/297 (15%), Positives = 87/297 (29%), Gaps = 113/297 (38%)
Query: 6 GQNLPYEVKTATSLESSDYDGIVLVS-----NKVPED---AAYP--QPIIKLLQ------ 49
+ L ++T E G+ ++ + P+ + P P+I ++Q
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 50 --EQSKIDKG-FNDDI--TLLHSS-LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGI--- 100
+ G + HS L + + A T D S+ + +K I
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-AET-------DSWESFFVSVRKAITVL 303
Query: 101 ----ARALKA-------------------GITKPLLA-------------------LPSD 118
R +A G+ P+L+ LP+
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 119 P-------NFPKSEVVTLLGAMEGLYT-NLQYREFKPEI--------FPKVKVLGIW--- 159
N K+ VV+ G + LY NL R+ K F + K+
Sbjct: 364 KQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 160 -------SPKLDGAGLESVVSAATTLESARWVARDIG--------GTDPERMAPPVI 201
S L A +++ + + A+DI G+D ++ +
Sbjct: 422 PVASPFHSHLLVPA--SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Score = 30.4 bits (68), Expect = 0.40
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 44/137 (32%)
Query: 80 GNMTKEY-DDVR----SYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAME 134
GN T +Y +++R +Y I + A L+ D ++ + +L +E
Sbjct: 164 GN-TDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 135 ---------------------GLYTNLQYREFKPEIFPKVKVLGIWSPK-----LDGA-- 166
G+ Y K+LG ++P L GA
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-------AKLLG-FTPGELRSYLKGATG 272
Query: 167 GLESVVSAATTLESARW 183
+ +V+A E+ W
Sbjct: 273 HSQGLVTAVAIAETDSW 289
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 40.4 bits (95), Expect = 2e-04
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 9/145 (6%)
Query: 61 DITLLH--SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSD 118
LLH ++ + R + G + D R Y + +K I G + + L
Sbjct: 58 QTLLLHHVPNVLSERILLIGCGK--ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTEL 115
Query: 119 PNFPKSEV----VTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSP-KLDGAGLESVVS 173
++ + A E LY+ Q + K E ++ + P + + E +
Sbjct: 116 HVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQ 175
Query: 174 AATTLESARWVARDIGGTDPERMAP 198
+ + A+D+G P
Sbjct: 176 HGLAIAAGIKAAKDLGNMPPNICNA 200
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/207 (8%), Positives = 53/207 (25%), Gaps = 18/207 (8%)
Query: 5 PGQNLPYEVKTATSLESSDYDGIVLVSNKVPE--------DAAYPQPIIKLLQEQSKID- 55
P ++ +V + + + + N + + + + L++++
Sbjct: 23 PIHDIKVQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKF 82
Query: 56 KGFNDDITLLH---SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPL 112
+ + + Y G+ + ++K
Sbjct: 83 NVKLGTSKHFYMFNDNKNSVAVGYVGCGS--VADLSEADMKRVVLSLVTMLHDNKLSKLT 140
Query: 113 LALPSDPNFPKSEVVTLLGAMEGLYTNLQYR-EFKPEIFPKVKVLGIWSPKLDGAGLESV 171
+ + + L T+ +++ K +K LG++ + +
Sbjct: 141 VVFEINVDKNLFRFF-LETLFYEYMTDERFKSTDKNVNMEYIKHLGVYIN--NADTYKEE 197
Query: 172 VSAATTLESARWVARDIGGTDPERMAP 198
V A + A + P
Sbjct: 198 VEKARVYYFGTYYASQLIAAPSNYCNP 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 6e-04
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 53/173 (30%)
Query: 41 PQPIIKLLQE-QSKIDKGFN------DDITLLHSSLPA--SRFVYAPTGNMTKEY----- 86
P+ ++++LQ+ +ID + +I L S+ A R + +K Y
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL------KSKPYENCLL 248
Query: 87 --DDVRSYAEAAK--------------KGIARALKAGITKPLLALPSDPNFPKSEVVTLL 130
+V++ A+A K + L A T + EV +LL
Sbjct: 249 VLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 131 GAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARW 183
Y + + ++ E VL +P+ S+++ + A W
Sbjct: 308 ----LKYLDCRPQDLPRE------VLTT-NPR-----RLSIIAESIRDGLATW 344
Score = 36.0 bits (82), Expect = 0.008
Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 78/224 (34%)
Query: 3 LPPGQNLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFND-- 60
PP ++P + L ++ + + D ++ L + S ++K +
Sbjct: 381 FPPSAHIPTIL-----LS-------LIWFDVIKSD---VMVVVNKLHKYSLVEKQPKEST 425
Query: 61 ----DITL-----------LHSSLPASRFVYA-----PTGNMTKEYDDVRSYAEAAKKGI 100
I L LH S+ Y + ++ Y D Y+ I
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSH-----I 477
Query: 101 ARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWS 160
LK N E +TL ++ + + F + K+
Sbjct: 478 GHHLK--------------NIEHPERMTL---FRMVFLDFR--------FLEQKI----- 507
Query: 161 PKLDGAGLESVVSAATTLESARWVARDIGGTDP--ERMAPPVIN 202
+ D + S TL+ ++ I DP ER+ +++
Sbjct: 508 -RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 35.0 bits (81), Expect = 0.013
Identities = 17/188 (9%), Positives = 52/188 (27%), Gaps = 13/188 (6%)
Query: 15 TATSLESSDYDGIVLVSNKVPE-DAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASR 73
+ + + +++ + + P K L ++ K + ++ L
Sbjct: 5 VVNNQSTLAAELMIVAQENLQKLVEQTKCPNSKALLDRRIF-KAKSGEVLPLLH--GDKI 61
Query: 74 FVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT---LL 130
+ G ++ Y + K + K I + + + + T +
Sbjct: 62 VILLGLGL--RQDFIASEYDKIIAKAAEQLKKLAIKEISVDIDYAFENDNVKQFTLDTVR 119
Query: 131 GAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGG 190
+ Y Q + K ++ + + +E + + + A+D+
Sbjct: 120 ALISETYVFDQLKTEKEN--YSLEQIELVYS--GDQDIEDSAKIGSAIACGQNYAKDLQN 175
Query: 191 TDPERMAP 198
Sbjct: 176 LPANICTT 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.15
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 30/59 (50%)
Query: 50 EQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGI 108
E+ + K L +SL +YA ++A A A+KA +
Sbjct: 18 EKQALKK--------LQASLK----LYAD---------------DSAP---ALAIKATM 46
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 29.7 bits (67), Expect = 0.68
Identities = 8/113 (7%), Positives = 26/113 (23%), Gaps = 5/113 (4%)
Query: 87 DDVRSYAEAAKKGIARALK-AGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREF 145
++ + + + AL + + N A G +
Sbjct: 115 NNCPARPDVVTALVTAALDEVKEPNTTVDVFVLSNAVLPIAA--AVARCGKHNFSAKDGA 172
Query: 146 KPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAP 198
+ KV + + + ++ + + + P +
Sbjct: 173 AAAAYNSGKVSRLQVVFPEPP--AIPPKDLEAVATSTQLCQRLVDAPPNLLTT 223
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 2clp_A* 2c91_A*
Length = 327
Score = 26.4 bits (59), Expect = 6.2
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 132 AMEGLYTNLQYREFKPEIFPKVKVLGI----WSP 161
+G+Y N R+ + E+FP ++ G+ ++P
Sbjct: 163 VYQGMY-NAITRQVETELFPCLRHFGLRFYAFNP 195
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A;
putative protein, molybdenum cofactor, structural G
NPPSFA; 1.61A {Aquifex aeolicus}
Length = 201
Score = 26.1 bits (58), Expect = 7.2
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 18/71 (25%)
Query: 99 GIARALKAGITKPLLALPSD-PNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVK--- 154
G+ ALK + + L D P K V+ +L FK +
Sbjct: 87 GLYTALKHAKEENVFVLSGDLPLMKKETVLYVL------------ENFKEPVSVAKTEKL 134
Query: 155 --VLGIWSPKL 163
++G++S KL
Sbjct: 135 HTLVGVYSKKL 145
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 26.5 bits (58), Expect = 7.4
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 56 KGFNDDITLLHSSLPASR-FVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGIT 109
+ +IT R F+ P+ M YD + K+ + LK G T
Sbjct: 297 NNYCSNIT---------RTFLIDPSEEMANNYDFLL---TLQKEIVTNILKPGRT 339
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.380
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,172,484
Number of extensions: 187749
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 20
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.1 bits)