RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6039
         (203 letters)



>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
           dehydratase {Staphylococcus aureus [TaxId: 1280]}
          Length = 95

 Score = 26.3 bits (58), Expect = 0.93
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 93  AEAAKKGIARALKAGITK 110
            EA  K  +RAL   +T 
Sbjct: 77  IEAIFKAFSRALGIALTA 94


>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
           dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
           5207]}
          Length = 94

 Score = 26.4 bits (58), Expect = 1.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 93  AEAAKKGIARALKAGITK 110
           AE+A K +A A++  I++
Sbjct: 77  AESAFKALALAIRMAISR 94


>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
           domain {Escherichia coli, PepA [TaxId: 562]}
          Length = 325

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 178 LESARWVARDIGGTDPERMAPP 199
           + +    A+D+G   P      
Sbjct: 2   IAAGIKAAKDLGNMPPNICNAA 23


>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 180

 Score = 26.8 bits (59), Expect = 1.3
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 17 TSLESSDY--DGIVLVSNKVPEDAAYPQPIIKLLQ---EQSKIDKGFNDDITLLHSSLPA 71
           +  ++D       +   +V          IK +Q   +Q K+ KG + DI  ++++  A
Sbjct: 10 QAFCNADIVIRAKAVNKKEVDSGNDIYGNPIKRIQYEIKQIKMFKGPDQDIEFIYTAPAA 69

Query: 72 SRFVYAPTGNMTKEY 86
          +    +      KEY
Sbjct: 70 AVCGVSLDIGGKKEY 84


>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 325

 Score = 26.7 bits (58), Expect = 2.1
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 180 SARWVARDIGGTDPERMAPP 199
           S + +AR +  T    M P 
Sbjct: 3   SGQNLARRLMETPANEMTPT 22


>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
           [TaxId: 562]}
          Length = 309

 Score = 26.3 bits (58), Expect = 3.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 149 IFPKVKVLGIWSPKLDGAG 167
           + P V  +  +SP LD  G
Sbjct: 268 VVPGVMGIAAFSPPLDEDG 286


>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
           C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
           2262]}
          Length = 89

 Score = 24.7 bits (54), Expect = 3.6
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 133 MEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLES---VVSAATTLESARWVARDI 188
           ++ +   L   E++PE FP V +  +  PK       S   V S A +   A    R +
Sbjct: 25  LDVVALTLPNCEYEPEQFPGV-IYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKL 82


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score = 26.0 bits (57), Expect = 3.9
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 147 PEIFPKVKVLGIWSPKLDGAG 167
            + F     +GI+ P +D  G
Sbjct: 287 EQPFQSGCGIGIYGPAIDEYG 307


>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
           C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
           2262]}
          Length = 92

 Score = 23.5 bits (51), Expect = 9.1
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 133 MEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLES---VVSAATTLESARWVARDI 188
           +E +       ++ PE FP + +  +  PK+      S   VV+ A +++        +
Sbjct: 26  LEKVLDLCPNSKYNPEEFPGI-ICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKL 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,493
Number of extensions: 33610
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 12
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)