BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6043
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 16/222 (7%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
+ P E I+ FKNT +K+++ ++ + + L AV + + +H+ R++ + Y
Sbjct: 214 LTPQTFAEDIVNHFKNT-KVKVDVKDYDTLVSEGFGLLQAVGKGS----KHKPRLVTITY 268
Query: 61 EXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
+ LVGKG+TYD+GG IK MA M D CGAA V G ++A + LQ V
Sbjct: 269 NGKDKDEAP-IALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPV 327
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
+VG LA N E S D+V + +G+ + V NTDAEGR +AD + + A + + +V
Sbjct: 328 NIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFY-ANQYQPSV 386
Query: 181 NPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSE 222
+ ATLTG A + +G+ D A + N+ V+L++
Sbjct: 387 ---IMDFATLTGAAIVALGD------DKAAAFESNSKVILND 419
>pdb|3IJ3|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Cytosol
Aminopeptidase From Coxiella Burnetii
Length = 482
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 21 KINIIKDPKILDKEYPLFSAVNRAAS----VIDRHQGRVIFLEYEXXXXXXXXXLFLVGK 76
K+ II+ K L+ E+P AV RA S +ID G + + LVGK
Sbjct: 203 KVKIIES-KDLETEFPAIYAVGRAGSRPPLLIDLKWGDI-----------KAPKVTLVGK 250
Query: 77 GVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGEN 136
GV +D+GG DIK G M M +D GAA G + + + Q VR+ + V N+ G
Sbjct: 251 GVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSR 310
Query: 137 SYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACL 196
SY +VV +RA K I +TNTDAEGR +AD LA ++ D + +TLTG A +
Sbjct: 311 SYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLI----IDFSTLTGAARI 366
Query: 197 TVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKS--KCEGEDLI 254
+G + N Q++ A L + DP R F+ +++ K E DL
Sbjct: 367 ALGPNLPALFAN----QDSLAQALIDASLKTDDPL----WRLPLFQPYRNYLKSEVADLT 418
Query: 255 QS 256
S
Sbjct: 419 NS 420
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 58 LEYEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQ 117
+EY+ + LVGKG+T+D+GG IK S M M D CGAA V G M+ VA LQ
Sbjct: 252 IEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQ 311
Query: 118 PKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAK 177
+ V+G LA N G +Y +V+ + +G+ + V NTDAEGR + DVL ++
Sbjct: 312 LPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEP 371
Query: 178 DAVNPHLFTIATLTGHACLTVGEGYSIVMDN 208
+AV +ATLTG + +G + +M N
Sbjct: 372 EAV----IDVATLTGACVIALGHHITGLMAN 398
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 9/206 (4%)
Query: 3 PPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEX 62
P + E E K ++K+ ++ + KI D F AV + + R+I L Y+
Sbjct: 199 PSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSD----QPPRLIVLNYQG 254
Query: 63 XXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRV 122
LVGKG+T+DTGG +K M M D CGAA V G ++AV LQ V +
Sbjct: 255 GKKADKP-FVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNL 313
Query: 123 VGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNP 182
V LA N + ++V + +G+ + + NTDAEGR + D L + AE+ K
Sbjct: 314 VCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTY-AERFKPQA-- 370
Query: 183 HLFTIATLTGHACLTVGEGYSIVMDN 208
+ IATLTG + +G + +M N
Sbjct: 371 -VIDIATLTGACIVALGSHTTGLMGN 395
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE- 59
M P K E + E K+ SIK ++ PK +E + S + SV + +FLE
Sbjct: 178 MTPTKFAEIVEENLKSA-SIKTDVFIRPKSWIEEQEMGSFL----SVAKGSEEPPVFLEI 232
Query: 60 -YEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP 118
Y+ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 233 HYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDL 292
Query: 119 KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKD 178
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 293 PINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-----H 347
Query: 179 AVNPH-LFTIATLTGHACLTVGEGYSIVMDN 208
NP + ATLTG + +G G + V N
Sbjct: 348 TFNPKVIINAATLTGAMDIALGSGATGVFTN 378
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE- 59
M P K E + E K+ SIK ++ PK +E + S + SV + +FLE
Sbjct: 178 MTPTKFAEIVEENLKSA-SIKTDVFIRPKSWIEEQEMGSFL----SVAKGSEEPPVFLEI 232
Query: 60 -YEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP 118
Y+ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 233 HYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDL 292
Query: 119 KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKD 178
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 293 PINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-----H 347
Query: 179 AVNPH-LFTIATLTGHACLTVGEGYSIVMDN 208
NP + ATLTG + +G G + V N
Sbjct: 348 TFNPKVIINAATLTGAMDIALGSGATGVFTN 378
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE- 59
M P K E + E K+ SIK ++ PK +E + S + SV + +FLE
Sbjct: 178 MTPTKFAEIVEENLKSA-SIKTDVFIRPKSWIEEQEMGSFL----SVAKGSEEPPVFLEI 232
Query: 60 -YEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP 118
Y+ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 233 HYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDL 292
Query: 119 KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKD 178
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 293 PINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-----H 347
Query: 179 AVNPH-LFTIATLTGHACLTVGEGYSIVMDN 208
NP + ATLTG + +G G + V N
Sbjct: 348 TFNPKVIINAATLTGAMDIALGSGATGVFTN 378
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE- 59
M P K E + E K+ SIK ++ PK +E + S + SV + +FLE
Sbjct: 179 MTPTKFAEIVEENLKSA-SIKTDVFIRPKSWIEEQEMGSFL----SVAKGSEEPPVFLEI 233
Query: 60 -YEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP 118
Y+ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 234 HYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDL 293
Query: 119 KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKD 178
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 294 PINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-----H 348
Query: 179 AVNPH-LFTIATLTGHACLTVGEGYSIVMDN 208
NP + ATLTG + +G G + V N
Sbjct: 349 TFNPKVIINAATLTGAMDIALGSGATGVFTN 379
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE- 59
M P K E + E K+ SIK ++ PK +E + S + SV + +FLE
Sbjct: 178 MTPTKFAEIVEENLKSA-SIKTDVFIRPKSWIEEQEMGSFL----SVAKGSEEPPVFLEI 232
Query: 60 -YEXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP 118
Y+ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 233 HYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDL 292
Query: 119 KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKD 178
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 293 PINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-----H 347
Query: 179 AVNPH-LFTIATLTGHACLTVGEGYSIVMDN 208
NP + ATLTG + +G G + V N
Sbjct: 348 TFNPKVIINAATLTGAMDIALGSGATGVFTN 378
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 73 LVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNS 132
LVGKG+T+DTGG ++K G + M D CG A V G A + + +V + V N+
Sbjct: 259 LVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPINLVVVVPAVENA 318
Query: 133 CGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPH-LFTIATLT 191
N+Y +V+ S +GK I V NTDAEGR + D L + AE+ NP L +ATLT
Sbjct: 319 IDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTY-AER----FNPEALVDVATLT 373
Query: 192 GHACLTVGEGYSIVM 206
G + +G + +M
Sbjct: 374 GACMVALGHQTAGLM 388
>pdb|3PEI|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Francisella Tularensis
Length = 486
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 71 LFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVR 130
+ LVGKG+ +D GG IK + D G A V G KA+A L V VVG +
Sbjct: 246 IVLVGKGLVFDNGGICIKQAAGXDSXKXDXGGVAAVXGTXKAIAXLNLPVNVVGVXGLAE 305
Query: 131 NSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATL 190
N+ SY +V+ S G + V+NTDAEGR + D L ++ + AV +ATL
Sbjct: 306 NAVDARSYRPGDVLKSXKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAV----IDLATL 361
Query: 191 TGHACLTVGEGYS 203
TG +++G+ YS
Sbjct: 362 TGAXIISLGDAYS 374
>pdb|3KQX|A Chain A, Structure Of A Protease 1
pdb|3KQX|B Chain B, Structure Of A Protease 1
pdb|3KQX|C Chain C, Structure Of A Protease 1
pdb|3KQX|D Chain D, Structure Of A Protease 1
pdb|3KQX|E Chain E, Structure Of A Protease 1
pdb|3KQX|F Chain F, Structure Of A Protease 1
pdb|3KQX|G Chain G, Structure Of A Protease 1
pdb|3KQX|H Chain H, Structure Of A Protease 1
pdb|3KQX|I Chain I, Structure Of A Protease 1
pdb|3KQX|J Chain J, Structure Of A Protease 1
pdb|3KQX|K Chain K, Structure Of A Protease 1
pdb|3KQX|L Chain L, Structure Of A Protease 1
pdb|3KQZ|A Chain A, Structure Of A Protease 2
pdb|3KQZ|B Chain B, Structure Of A Protease 2
pdb|3KQZ|C Chain C, Structure Of A Protease 2
pdb|3KQZ|D Chain D, Structure Of A Protease 2
pdb|3KQZ|E Chain E, Structure Of A Protease 2
pdb|3KQZ|F Chain F, Structure Of A Protease 2
pdb|3KQZ|G Chain G, Structure Of A Protease 2
pdb|3KQZ|H Chain H, Structure Of A Protease 2
pdb|3KQZ|I Chain I, Structure Of A Protease 2
pdb|3KQZ|J Chain J, Structure Of A Protease 2
pdb|3KQZ|K Chain K, Structure Of A Protease 2
pdb|3KQZ|L Chain L, Structure Of A Protease 2
pdb|3KR4|A Chain A, Structure Of A Protease 3
pdb|3KR4|B Chain B, Structure Of A Protease 3
pdb|3KR4|C Chain C, Structure Of A Protease 3
pdb|3KR4|D Chain D, Structure Of A Protease 3
pdb|3KR4|E Chain E, Structure Of A Protease 3
pdb|3KR4|F Chain F, Structure Of A Protease 3
pdb|3KR4|G Chain G, Structure Of A Protease 3
pdb|3KR4|H Chain H, Structure Of A Protease 3
pdb|3KR4|I Chain I, Structure Of A Protease 3
pdb|3KR4|J Chain J, Structure Of A Protease 3
pdb|3KR4|K Chain K, Structure Of A Protease 3
pdb|3KR4|L Chain L, Structure Of A Protease 3
pdb|3KR5|A Chain A, Structure Of A Protease 4
pdb|3KR5|B Chain B, Structure Of A Protease 4
pdb|3KR5|C Chain C, Structure Of A Protease 4
pdb|3KR5|D Chain D, Structure Of A Protease 4
pdb|3KR5|E Chain E, Structure Of A Protease 4
pdb|3KR5|F Chain F, Structure Of A Protease 4
pdb|3KR5|G Chain G, Structure Of A Protease 4
pdb|3KR5|H Chain H, Structure Of A Protease 4
pdb|3KR5|I Chain I, Structure Of A Protease 4
pdb|3KR5|J Chain J, Structure Of A Protease 4
pdb|3KR5|K Chain K, Structure Of A Protease 4
pdb|3KR5|L Chain L, Structure Of A Protease 4
pdb|3T8W|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|B Chain B, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|C Chain C, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|D Chain D, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|E Chain E, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|F Chain F, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|G Chain G, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|H Chain H, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|I Chain I, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|J Chain J, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|K Chain K, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|L Chain L, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 528
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 73 LVGKGVTYDTGGADIKIS-GNMAGMAR-DKCGAAVVAGFMKAVAMLQPK-VRVVGALAVV 129
LVGKG+T+D+GG ++K + G+M + + D G A V G V L+P+ V + AV
Sbjct: 288 LVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLSAVC 347
Query: 130 RNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIAT 189
N +NSY +++ + GK I V NTDAEGR +AD L + + D ++ IAT
Sbjct: 348 ENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVD----YIVDIAT 403
Query: 190 LTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCE 249
LTG ++G Y+ V N + N +L ++ + +P I E SK
Sbjct: 404 LTGAMLYSLGTSYAGVFGNN--EELINKIL--QSSKTSNEPVWWLPIINEYRATLNSKYA 459
Query: 250 GEDLIQSGMKSS 261
+ I S +K+S
Sbjct: 460 DINQISSSVKAS 471
>pdb|4EFD|A Chain A, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|B Chain B, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|C Chain C, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|D Chain D, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|E Chain E, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|F Chain F, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
Length = 522
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 15/138 (10%)
Query: 73 LVGKGVTYDTGGADIKISGNMAGMARDKCGAAVV-AGFMKAVAMLQPKVRVVGALAVVRN 131
LVGKG+ YD GG +K + M M D GAA V GF+ AV + QP V++ L + N
Sbjct: 287 LVGKGIVYDCGGLALKPADYMKLMKHDMGGAAAVFCGFLTAVRLQQP-VQLSCTLCLAEN 345
Query: 132 SCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFT----- 186
+ G SY +D+++V ++GK + V NTDAEGR + D + H A N FT
Sbjct: 346 AIGPKSYRNDDIIVMKSGKTVEVINTDAEGRIVLGDGVFH-------ATNELSFTPDVVI 398
Query: 187 -IATLTGHACLTVGEGYS 203
+ATLTG + G ++
Sbjct: 399 DMATLTGAQGIATGRHHA 416
>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
Aminopeptidase-Zinc Complex (Lap1)
Length = 491
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 73 LVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP---KVRVVGALAVV 129
LVGKGV YDTGG IK M M RD GA AG ++A + L + L +V
Sbjct: 249 LVGKGVVYDTGGLQIKTKTGMPNMKRDMGGA---AGMLEAYSALVKHGFSQTLHACLCIV 305
Query: 130 RNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIAT 189
N+ + D+++ +GK + + NTDAEGR +AD + + E K +F +AT
Sbjct: 306 ENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATT---IFDMAT 362
Query: 190 LTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGD 229
LTG G + M N Q N ++ + G+A GD
Sbjct: 363 LTGAQAWLSGRLHGAAMTND--EQLENEII--KAGKASGD 398
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 150 KRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMD-N 208
R+R+ NT + F ++ V +M A D V + FT+++L L VG+ Y + +D N
Sbjct: 266 HRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSL----FLAVGQRYDVTIDAN 321
Query: 209 GP 210
P
Sbjct: 322 SP 323
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 129 VRNSCGENSYVSDEVVVSRAGKR--IRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFT 186
V + GE Y + V GKR +R+ NT E F ++ V M A D V + T
Sbjct: 205 VNPNTGEGQYAN---VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMT 261
Query: 187 IATLTGHACLTVGEGYSIVMD 207
+ +L L VG+ Y +V+D
Sbjct: 262 VDSL----FLAVGQRYDVVID 278
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 129 VRNSCGENSYVSDEVVVSRAGKR--IRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFT 186
V + GE Y + V GKR +R+ NT E F ++ V M A D V + T
Sbjct: 205 VNPNTGEGQYAN---VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMT 261
Query: 187 IATLTGHACLTVGEGYSIVMD 207
+ +L L VG+ Y +V+D
Sbjct: 262 VDSL----FLAVGQRYDVVID 278
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 129 VRNSCGENSYVSDEVVVSRAGKR--IRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFT 186
V + GE Y + V GKR +R+ NT E F ++ V M A D V + T
Sbjct: 205 VNPNTGEGQYAN---VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMT 261
Query: 187 IATLTGHACLTVGEGYSIVMD 207
+ +L L VG+ Y +V+D
Sbjct: 262 VDSL----FLAVGQRYDVVID 278
>pdb|4HZ2|A Chain A, Crystal Structure Of Glutathione S-Transferase Xaut_3756
(Target Efi- 507152) From Xanthobacter Autotrophicus Py2
pdb|4HZ2|B Chain B, Crystal Structure Of Glutathione S-Transferase Xaut_3756
(Target Efi- 507152) From Xanthobacter Autotrophicus Py2
Length = 230
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 198 VGEGYSIVMDNGPARQENNAVLLS-ETGEAMGDPFEISRIRREDFRFFK 245
+G+ +V+D+G A +E+NA+LL G P ++R R ++ FF+
Sbjct: 71 IGKVPVVVLDDGTALRESNAILLHFAEGTPWLPPPGLARTRVHEWLFFE 119
>pdb|4EUZ|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 S70a- Meropenem Complex
Length = 283
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 82 TGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSD 141
TGGA I+ S + DK G V G A++ P LAV + NS SD
Sbjct: 195 TGGARIRASVPANWVVGDKTGTCGVYGTANDYAVIWPVAHAPIVLAVYTSKPDRNSKHSD 254
Query: 142 EVVVSRAGKRIRVTNTDA 159
V+ + + N DA
Sbjct: 255 AVIADASRIVLESFNIDA 272
>pdb|4EQI|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
pdb|4EQI|B Chain B, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
Length = 283
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 82 TGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSD 141
TGGA I+ S + DK G V G A++ P LAV + NS SD
Sbjct: 195 TGGARIRASVPANWVVGDKTGTCGVYGTANDYAVIWPVAHAPIVLAVYTSKPDRNSKHSD 254
Query: 142 EVVVSRAGKRIRVTNTDA 159
V+ + + N DA
Sbjct: 255 AVIADASRIVLESFNIDA 272
>pdb|4EV4|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 E166a Mutant With The Acylenzyme Intermediate Of
Meropenem
Length = 283
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 82 TGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSD 141
TGGA I+ S + DK G V G A++ P LAV + NS SD
Sbjct: 195 TGGARIRASVPANWVVGDKTGTCGVYGTANDYAVIWPVAHAPIVLAVYTSKPDRNSKHSD 254
Query: 142 EVVVSRAGKRIRVTNTDA 159
V+ + + N DA
Sbjct: 255 AVIADASRIVLESFNIDA 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,054,879
Number of Sequences: 62578
Number of extensions: 306533
Number of successful extensions: 716
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 31
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)