Query psy6043
Match_columns 282
No_of_seqs 156 out of 1430
Neff 4.9
Searched_HMMs 29240
Date Sat Aug 17 01:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gyt_A Cytosol aminopeptidase; 100.0 5E-101 2E-105 760.8 25.5 259 1-280 198-459 (503)
2 1lam_A Leucine aminopeptidase; 100.0 1.5E-99 5E-104 746.9 25.0 261 1-280 178-441 (484)
3 3h8g_F Cytosol aminopeptidase; 100.0 6.6E-99 2E-103 743.3 25.6 259 1-280 197-456 (497)
4 3pei_A Cytosol aminopeptidase; 100.0 4.8E-99 2E-103 742.3 22.4 260 1-280 181-441 (486)
5 3kzw_A Cytosol aminopeptidase; 100.0 2.1E-98 7E-103 739.9 24.2 260 1-280 214-474 (515)
6 3jru_B Probable cytosol aminop 100.0 5.2E-98 2E-102 735.5 26.7 258 1-280 193-451 (490)
7 4efd_A Aminopeptidase; structu 100.0 2.2E-98 8E-103 738.9 21.2 264 1-280 221-485 (522)
8 2hc9_A Leucine aminopeptidase 100.0 1.8E-97 6E-102 731.4 25.7 262 1-280 184-446 (491)
9 3kr4_A M17 leucyl aminopeptida 100.0 3.3E-97 1E-101 731.9 25.3 259 1-280 222-484 (528)
10 3ij3_A Cytosol aminopeptidase; 100.0 6.1E-97 2E-101 724.4 21.9 256 1-280 184-440 (482)
11 2kjp_A Uncharacterized protein 74.9 1.3 4.6E-05 33.2 1.9 26 128-153 8-33 (91)
12 1cg2_A Carboxypeptidase G2; me 74.3 11 0.00038 34.4 8.4 106 4-132 42-155 (393)
13 2dls_A PDZ-rhogef, RHO guanine 73.6 2.1 7E-05 31.6 2.7 26 128-153 36-62 (93)
14 2d90_A PDZ domain containing p 71.7 2.7 9.1E-05 31.4 3.0 27 126-152 35-62 (102)
15 2hga_A Conserved protein MTH13 70.0 1.9 6.6E-05 34.3 1.9 27 127-153 31-57 (125)
16 2eaq_A LIM domain only protein 69.2 1.3 4.5E-05 32.2 0.7 25 129-153 36-61 (90)
17 2kl1_A YLBL protein; structure 69.0 2.2 7.5E-05 31.9 1.9 27 127-153 11-37 (94)
18 3khx_A Putative dipeptidase sa 69.0 18 0.00062 34.5 8.9 92 5-131 67-173 (492)
19 1q7l_A Aminoacylase-1; catalys 68.8 31 0.001 28.6 9.3 31 100-130 115-147 (198)
20 3i18_A LMO2051 protein; alpha- 68.7 1.9 6.5E-05 32.4 1.6 27 127-153 13-39 (100)
21 2edz_A PDZ domain-containing p 67.9 1.8 6.3E-05 33.1 1.3 26 127-152 44-70 (114)
22 2jxo_A Ezrin-radixin-moesin-bi 66.9 1.3 4.4E-05 32.8 0.3 24 129-152 41-65 (98)
23 2kv8_A RGS12, regulator of G-p 66.5 2.8 9.7E-05 29.9 2.1 26 128-153 30-56 (83)
24 2v90_A PDZ domain-containing p 66.1 1.3 4.4E-05 32.7 0.1 25 128-152 37-62 (96)
25 3gb0_A Peptidase T; NP_980509. 65.7 34 0.0012 30.7 9.6 112 4-130 26-141 (373)
26 1mfg_A ERB-B2 interacting prot 65.2 4.6 0.00016 29.6 3.0 26 127-152 41-66 (95)
27 2pkt_A PDZ and LIM domain prot 65.1 1.8 6.1E-05 31.6 0.7 25 128-152 34-59 (91)
28 2uzc_A Human pdlim5, PDZ and L 64.7 1.5 5.1E-05 31.7 0.2 23 130-152 36-59 (88)
29 4h2k_A Succinyl-diaminopimelat 64.5 30 0.001 30.1 8.7 33 98-130 102-137 (269)
30 3bpu_A Membrane-associated gua 63.9 3.8 0.00013 29.6 2.3 23 130-152 35-57 (88)
31 2pzd_A Serine protease HTRA2; 63.8 1.5 5.2E-05 33.4 0.1 26 128-153 42-68 (113)
32 2pa1_A PDZ and LIM domain prot 63.1 1.9 6.5E-05 31.2 0.6 24 129-152 34-58 (87)
33 1x5n_A Harmonin; PDZ domain, u 62.5 4.7 0.00016 30.6 2.7 32 119-153 42-74 (114)
34 1vb7_A PDZ and LIM domain 2; P 61.6 1.9 6.4E-05 31.8 0.3 26 127-152 36-62 (94)
35 2w4f_A Protein LAP4; structura 61.3 1.9 6.5E-05 31.7 0.3 30 120-152 36-66 (97)
36 1v5l_A PDZ and LIM domain 3; a 60.9 3.4 0.00012 31.0 1.6 27 126-152 34-61 (103)
37 1g9o_A NHE-RF; PDZ domain, com 60.7 2.4 8.2E-05 30.8 0.7 24 129-152 35-59 (91)
38 2i6v_A General secretion pathw 60.1 3.1 0.0001 30.4 1.2 24 129-152 24-51 (87)
39 2h2b_A Tight junction protein 59.8 5.7 0.0002 29.7 2.8 25 128-152 46-70 (107)
40 3id1_A Regulator of sigma E pr 59.8 1.8 6.2E-05 32.5 -0.1 25 129-153 10-35 (95)
41 2pok_A Peptidase, M20/M25/M40 59.7 32 0.0011 32.3 8.6 34 98-131 146-182 (481)
42 1wh1_A KIAA1095 protein; PDZ d 59.7 2 6.9E-05 33.5 0.2 31 120-153 50-82 (124)
43 2ego_A General receptor for ph 59.0 2.6 9E-05 31.1 0.7 24 129-152 45-69 (96)
44 1qav_A Alpha-1 syntrophin (res 58.9 2.5 8.7E-05 30.7 0.6 27 127-153 36-64 (90)
45 2eeh_A PDZ domain-containing p 58.9 1.9 6.6E-05 32.1 -0.1 32 119-153 37-69 (100)
46 2q3g_A PDZ and LIM domain prot 58.8 2 6.9E-05 31.2 0.0 24 130-153 36-60 (89)
47 2cs5_A Tyrosine-protein phosph 58.7 6.2 0.00021 30.2 2.8 29 125-153 45-76 (119)
48 2p3w_A Probable serine proteas 58.6 2.1 7.1E-05 32.6 0.1 26 128-153 42-68 (112)
49 2yt7_A Amyloid beta A4 precurs 58.5 5.9 0.0002 29.6 2.6 28 125-152 41-70 (101)
50 1ihj_A INAD; intermolecular di 58.4 2.3 7.8E-05 31.4 0.3 27 126-152 42-70 (98)
51 1n7t_A 99-MER peptide of densi 58.3 5.5 0.00019 29.6 2.4 28 126-153 48-75 (103)
52 1lfw_A PEPV; hydrolase, dipept 58.2 37 0.0013 31.6 8.7 34 98-131 118-154 (470)
53 3cyy_A Tight junction protein 58.0 2.3 7.9E-05 30.8 0.2 25 129-153 31-57 (92)
54 2i4s_A General secretion pathw 58.0 3.4 0.00012 31.3 1.2 24 129-152 42-69 (105)
55 2he4_A Na(+)/H(+) exchange reg 57.4 2 6.8E-05 31.3 -0.2 23 130-152 37-60 (90)
56 3ct9_A Acetylornithine deacety 57.4 36 0.0012 30.7 8.2 34 99-132 105-139 (356)
57 2jil_A GRIP1 protein, glutamat 56.5 2.2 7.6E-05 31.4 -0.1 26 127-152 38-65 (97)
58 2dkr_A LIN-7 homolog B; LIN-7B 56.2 1.7 5.8E-05 31.7 -0.8 25 129-153 38-64 (93)
59 1x5q_A LAP4 protein; PDZ domai 56.1 2.2 7.4E-05 32.3 -0.2 30 120-152 48-78 (110)
60 1uep_A Membrane associated gua 55.9 6.1 0.00021 29.5 2.3 25 129-153 42-68 (103)
61 1uez_A KIAA1526 protein; PDZ d 55.9 2.1 7.3E-05 31.9 -0.3 32 119-153 36-68 (101)
62 2vsp_A PDZ domain-containing p 55.9 2 6.8E-05 31.4 -0.5 24 130-153 36-60 (91)
63 2qkv_A Inactivation-NO-after-p 55.5 3.7 0.00013 30.4 1.0 26 128-153 38-65 (96)
64 2ehr_A INAD-like protein; PDZ 55.2 7.3 0.00025 29.7 2.7 32 119-153 51-84 (117)
65 2fcf_A Multiple PDZ domain pro 55.0 2.3 7.8E-05 31.6 -0.2 24 129-152 47-72 (103)
66 2edp_A Fragment, shroom family 55.0 2.2 7.4E-05 32.0 -0.4 26 127-152 41-68 (100)
67 2vwr_A Ligand of NUMB protein 54.1 3 0.0001 30.6 0.3 25 129-153 37-63 (95)
68 2l97_A HTRA, putative serine p 53.9 6.5 0.00022 31.2 2.3 27 127-153 63-89 (134)
69 3rza_A Tripeptidase; phosphory 53.3 23 0.00078 32.4 6.2 114 5-130 45-162 (396)
70 2q9v_A Membrane-associated gua 53.0 3.2 0.00011 30.1 0.3 24 130-153 36-61 (90)
71 2la8_A Inactivation-NO-after-p 52.0 3.3 0.00011 31.7 0.2 27 127-153 31-59 (106)
72 3khf_A Microtubule-associated 51.9 2.8 9.5E-05 31.0 -0.2 25 129-153 42-67 (99)
73 3r68_A Na(+)/H(+) exchange reg 51.5 3 0.0001 30.4 -0.1 23 130-152 38-61 (95)
74 2vz5_A TAX1-binding protein 3; 51.5 3.4 0.00012 33.2 0.3 30 120-152 66-96 (139)
75 2i1n_A Discs, large homolog 3; 51.4 3 0.0001 31.0 -0.1 25 129-153 42-68 (102)
76 2opg_A Multiple PDZ domain pro 51.2 3.5 0.00012 30.3 0.3 24 129-152 38-63 (98)
77 1y8t_A Hypothetical protein RV 51.1 10 0.00034 34.2 3.3 28 126-153 247-275 (324)
78 2i04_A Membrane-associated gua 51.0 2.9 0.0001 29.9 -0.2 24 130-153 34-59 (85)
79 1te0_A Protease DEGS; two doma 51.0 9.4 0.00032 34.4 3.1 28 126-153 249-277 (318)
80 2qbw_A PDZ-fibronectin fusion 51.0 9.9 0.00034 31.2 3.0 25 128-152 31-55 (195)
81 2fe5_A Presynaptic protein SAP 50.9 2.9 0.0001 30.4 -0.2 16 138-153 52-67 (94)
82 2qg1_A Multiple PDZ domain pro 50.7 2.3 8E-05 30.9 -0.8 16 138-153 48-63 (92)
83 3ngh_A PDZ domain-containing p 50.5 3.3 0.00011 31.0 0.0 24 129-152 34-58 (106)
84 2edv_A FERM and PDZ domain-con 50.1 5.7 0.00019 29.5 1.3 28 126-153 36-63 (96)
85 2rcz_A Tight junction protein 49.7 5.3 0.00018 27.8 1.0 16 138-153 40-55 (81)
86 1ujv_A Membrane associated gua 49.4 9.4 0.00032 28.3 2.4 30 120-153 34-63 (96)
87 2koj_A Partitioning defective 49.3 4 0.00014 30.8 0.3 31 119-152 40-72 (111)
88 1v5q_A GRIP1 homolog, glutamat 49.3 3 0.0001 32.4 -0.4 32 119-153 46-79 (122)
89 2zpm_A Regulator of sigma E pr 49.3 6.1 0.00021 28.5 1.3 25 129-153 12-37 (91)
90 3qik_A Phosphatidylinositol 3, 49.0 2.5 8.4E-05 33.3 -1.0 29 128-156 46-75 (101)
91 1wf7_A Enigma homologue protei 48.4 3.5 0.00012 30.8 -0.2 16 138-153 47-62 (103)
92 1rgw_A ZAsp protein; PDZ, cyph 47.9 5.7 0.0002 28.2 1.0 15 138-152 43-57 (85)
93 3sfj_A TAX1-binding protein 3; 47.9 4.3 0.00015 30.2 0.3 25 129-153 53-78 (104)
94 2yub_A LIMK-2, LIM domain kina 47.8 5 0.00017 31.4 0.7 22 131-152 56-78 (118)
95 2kjd_A Sodium/hydrogen exchang 47.8 4.3 0.00015 31.4 0.3 24 129-152 41-65 (128)
96 1q7x_A PDZ2B domain of PTP-BAS 47.2 4.7 0.00016 30.3 0.4 24 130-153 51-76 (108)
97 2o2t_A Multiple PDZ domain pro 47.1 3.5 0.00012 31.5 -0.4 28 126-153 54-83 (117)
98 2jre_A C60-1 PDZ domain peptid 46.1 2.9 0.0001 31.4 -0.9 16 138-153 63-78 (108)
99 2iwq_A Multiple PDZ domain pro 46.0 3.9 0.00013 32.1 -0.2 31 120-153 61-93 (123)
100 1m5z_A GRIP, AMPA receptor int 45.9 6.6 0.00022 28.4 1.0 15 138-152 50-64 (91)
101 2vsv_A Rhophilin-2; scaffold p 45.8 3.9 0.00013 31.8 -0.3 24 130-153 53-77 (109)
102 2z17_A Pleckstrin homology SEC 45.4 3.5 0.00012 30.9 -0.6 25 129-153 56-81 (104)
103 2awx_A Synapse associated prot 45.3 4.9 0.00017 30.1 0.3 16 138-153 52-67 (105)
104 3axa_A Afadin, nectin-3, prote 45.3 4.2 0.00014 30.5 -0.2 26 128-153 45-72 (106)
105 2eeg_A PDZ and LIM domain prot 45.2 6 0.00021 29.0 0.7 23 130-152 41-64 (94)
106 2ejy_A 55 kDa erythrocyte memb 45.1 3.9 0.00013 31.1 -0.3 25 129-153 44-70 (97)
107 1uf1_A KIAA1526 protein; PDZ d 45.0 3.6 0.00012 32.1 -0.6 31 119-152 47-78 (128)
108 2kom_A Partitioning defective 44.9 4.2 0.00014 31.7 -0.2 32 119-153 59-92 (121)
109 2jik_A Synaptojanin-2 binding 44.7 4.5 0.00015 30.0 -0.1 24 130-153 46-71 (101)
110 1v1h_A Fibritin, fiber protein 44.7 5.4 0.00019 31.8 0.4 6 85-90 55-60 (103)
111 3isz_A Succinyl-diaminopimelat 44.6 1E+02 0.0035 27.2 8.9 34 99-132 100-136 (377)
112 3ife_A Peptidase T; metallopep 44.5 47 0.0016 30.8 6.9 34 98-131 165-201 (434)
113 2fne_A Multiple PDZ domain pro 44.4 4.3 0.00015 31.5 -0.2 25 129-153 61-87 (117)
114 1d5g_A Human phosphatase HPTP1 44.2 5 0.00017 29.3 0.1 24 130-153 42-67 (96)
115 1wf8_A Neurabin-I; PDZ domain, 44.1 4.9 0.00017 30.2 0.1 26 128-153 47-74 (107)
116 2f5y_A Regulator of G-protein 44.0 7.3 0.00025 28.3 1.0 16 138-153 42-57 (91)
117 1xmb_A IAA-amino acid hydrolas 44.0 43 0.0015 30.9 6.5 31 101-131 120-152 (418)
118 1vhe_A Aminopeptidase/glucanas 43.9 76 0.0026 28.9 8.1 34 98-131 183-217 (373)
119 2eno_A Synaptojanin-2-binding 43.9 6 0.00021 30.4 0.6 32 119-153 48-81 (120)
120 1fno_A Peptidase T; metallo pe 43.8 77 0.0026 28.9 8.2 34 98-131 139-174 (417)
121 2r4h_A Membrane-associated gua 43.7 6.5 0.00022 30.0 0.7 24 130-153 58-83 (112)
122 1uhp_A Hypothetical protein KI 42.8 5.4 0.00019 30.0 0.1 24 129-152 49-74 (107)
123 1q3o_A Shank1; PDZ, GKAP, pept 42.1 5.8 0.0002 29.9 0.2 15 138-152 63-77 (109)
124 3nfk_A Tyrosine-protein phosph 41.9 6 0.00021 29.6 0.3 27 127-153 49-78 (107)
125 1ueq_A Membrane associated gua 41.8 4.7 0.00016 31.3 -0.4 25 129-153 52-78 (123)
126 3pfo_A Putative acetylornithin 41.7 81 0.0028 28.8 8.0 34 98-131 143-179 (433)
127 2dlu_A INAD-like protein; PDZ 41.7 4.5 0.00015 30.6 -0.5 25 129-153 46-72 (111)
128 3tsv_A Tight junction protein 41.6 6 0.0002 31.1 0.2 24 130-153 60-84 (124)
129 3i4w_A Disks large homolog 4; 41.6 5.8 0.0002 29.3 0.1 24 129-152 43-68 (104)
130 1kwa_A Hcask/LIN-2 protein; PD 41.6 5.6 0.00019 29.1 0.0 28 126-153 30-59 (88)
131 1um1_A KIAA1849 protein, RSGI 41.2 4.8 0.00016 30.4 -0.4 16 138-153 55-70 (110)
132 2gzv_A PRKCA-binding protein; 40.9 6.4 0.00022 30.4 0.3 16 138-153 69-84 (114)
133 2e7k_A Maguk P55 subfamily mem 40.7 7.7 0.00027 28.5 0.7 26 127-152 35-62 (91)
134 1wha_A KIAA0147 protein, scrib 40.5 4.7 0.00016 30.2 -0.6 24 130-153 47-72 (105)
135 1wfv_A Membrane associated gua 40.3 9.6 0.00033 28.1 1.2 24 130-153 45-70 (103)
136 2djt_A Unnamed protein product 40.3 8.6 0.0003 28.5 0.9 15 138-152 57-71 (104)
137 1tp5_A Presynaptic density pro 40.2 5.2 0.00018 30.6 -0.4 23 130-152 47-71 (119)
138 3qe1_A Sorting nexin-27, G pro 39.8 5.9 0.0002 29.6 -0.1 26 128-153 50-76 (107)
139 1uew_A Membrane associated gua 39.6 12 0.00041 28.4 1.7 31 119-152 44-76 (114)
140 3n5f_A L-carbamoylase, N-carba 39.5 74 0.0025 29.0 7.3 88 5-131 36-125 (408)
141 1x6d_A Interleukin-16; PDZ dom 39.0 3.5 0.00012 31.6 -1.5 24 130-153 51-76 (119)
142 1y7n_A Amyloid beta A4 precurs 39.0 12 0.00041 27.7 1.5 16 138-153 49-64 (90)
143 1wif_A RSGI RUH-020, riken cDN 38.5 12 0.00041 29.9 1.6 28 126-153 54-83 (126)
144 2g5m_B Neurabin-2; spinophilin 38.1 6.1 0.00021 29.9 -0.2 16 138-153 54-69 (113)
145 3kzd_A TIAM-1, T-lymphoma inva 38.0 6.8 0.00023 30.0 0.0 26 128-153 42-68 (94)
146 2iwn_A Multiple PDZ domain pro 38.0 13 0.00043 26.8 1.5 16 138-153 52-67 (97)
147 1uit_A Human discs large 5 pro 37.7 4.7 0.00016 30.8 -1.0 15 138-152 60-74 (117)
148 1ysj_A Protein YXEP; M20 famil 37.6 1.2E+02 0.004 27.7 8.4 32 100-131 125-158 (404)
149 2lob_A Golgi-associated PDZ an 43.6 7 0.00024 30.1 0.0 27 127-153 59-87 (112)
150 2iwo_A Multiple PDZ domain pro 37.3 6.5 0.00022 30.6 -0.2 25 129-153 61-87 (120)
151 1i16_A Interleukin 16, LCF; cy 37.3 14 0.00049 28.9 1.8 39 127-173 63-103 (130)
152 2byg_A Channel associated prot 37.2 6.5 0.00022 30.4 -0.2 16 138-153 73-88 (117)
153 2d8i_A T-cell lymphoma invasio 37.1 6.1 0.00021 30.8 -0.4 27 127-153 50-77 (114)
154 3tx8_A Succinyl-diaminopimelat 37.0 1.1E+02 0.0037 27.3 7.9 34 99-132 103-138 (369)
155 1n7e_A AMPA receptor interacti 36.9 13 0.00046 27.1 1.5 24 130-153 39-64 (97)
156 1whd_A RGS3, regulator of G-pr 36.5 14 0.00047 27.5 1.5 16 138-153 54-69 (100)
157 1wi2_A Riken cDNA 2700099C19; 36.3 12 0.00041 27.9 1.2 15 138-152 59-73 (104)
158 1vae_A Rhophilin 2, rhophilin, 36.0 12 0.00041 28.8 1.2 16 138-153 54-69 (111)
159 2dm8_A INAD-like protein; PDZ 35.8 12 0.00042 28.2 1.2 16 138-153 62-77 (116)
160 4e34_A Golgi-associated PDZ an 35.8 13 0.00045 26.5 1.3 27 127-153 34-62 (87)
161 2eei_A PDZ domain-containing p 35.7 14 0.00046 27.5 1.4 16 138-153 50-65 (106)
162 2csj_A TJP2 protein; PDZ domai 35.6 7.5 0.00025 29.7 -0.1 23 130-152 55-77 (117)
163 3e17_A Tight junction protein 35.0 27 0.00092 25.3 2.9 24 130-153 30-55 (88)
164 4amh_A Disks large homolog 1; 34.4 8.1 0.00028 29.2 -0.1 25 128-152 39-65 (106)
165 1vgy_A Succinyl-diaminopimelat 34.1 1.4E+02 0.0046 27.0 8.1 35 98-132 102-139 (393)
166 1um7_A Synapse-associated prot 33.8 6.3 0.00022 29.6 -0.8 23 130-152 48-72 (113)
167 3cbz_A Dishevelled-2; PDZ doma 33.8 7.1 0.00024 29.6 -0.5 37 129-173 41-79 (108)
168 2db5_A INAD-like protein; PDZ 33.7 7.9 0.00027 30.1 -0.3 15 138-152 73-87 (128)
169 3l4f_D SH3 and multiple ankyri 33.6 14 0.0005 29.1 1.3 26 128-153 72-98 (132)
170 1va8_A Maguk P55 subfamily mem 33.2 13 0.00046 28.2 1.0 24 130-153 57-82 (113)
171 3stj_A Protease DEGQ; serine p 33.0 7.7 0.00026 35.8 -0.5 26 128-153 270-296 (345)
172 1lcy_A HTRA2 serine protease; 33.0 9.3 0.00032 34.7 0.1 26 128-153 263-289 (325)
173 1w85_A Pyruvate dehydrogenase 32.8 1.3E+02 0.0046 27.9 8.0 78 106-191 181-267 (368)
174 1wg6_A Hypothetical protein (r 32.5 13 0.00045 29.0 0.9 26 128-153 62-89 (127)
175 2l69_A Rossmann 2X3 fold prote 32.0 54 0.0018 26.1 4.3 52 2-63 34-86 (134)
176 4fln_A Protease DO-like 2, chl 31.5 19 0.00063 35.9 1.9 27 129-155 285-311 (539)
177 2dmz_A INAD-like protein; PDZ 31.2 7.7 0.00027 30.1 -0.7 15 138-152 65-79 (129)
178 1uju_A Scribble; PDZ domain, c 31.0 5.1 0.00018 30.3 -1.7 16 138-153 63-78 (111)
179 3rle_A Golgi reassembly-stacki 30.5 10 0.00035 32.1 -0.1 28 126-153 21-50 (209)
180 3num_A Serine protease HTRA1; 30.3 11 0.00037 34.2 0.0 27 126-152 259-286 (332)
181 4a8c_A Periplasmic PH-dependen 29.9 30 0.001 32.8 3.0 27 127-153 269-296 (436)
182 2daz_A INAD-like protein; PDZ 29.7 9.2 0.00031 29.6 -0.5 24 130-153 60-85 (124)
183 3r0h_A INAD, inactivation-NO-a 29.6 12 0.00039 31.0 0.1 25 129-153 53-79 (206)
184 2qt5_A Glutamate receptor-inte 29.4 10 0.00035 31.4 -0.3 25 129-153 41-67 (200)
185 3b76_A E3 ubiquitin-protein li 29.3 9.7 0.00033 29.7 -0.4 16 138-153 72-87 (118)
186 1z2l_A Allantoate amidohydrola 29.3 1.3E+02 0.0044 27.4 7.2 32 100-131 96-129 (423)
187 2dc2_A GOPC, golgi associated 29.1 14 0.00048 27.6 0.5 26 128-153 42-69 (103)
188 3r0h_A INAD, inactivation-NO-a 28.9 14 0.00048 30.4 0.5 25 129-153 144-170 (206)
189 4fuu_A Leucine aminopeptidase; 28.9 2.5E+02 0.0085 24.8 8.9 105 5-130 49-159 (309)
190 3hpk_A Protein interacting wit 28.5 13 0.00046 28.6 0.3 16 138-153 64-79 (125)
191 2kpk_A Membrane-associated gua 28.4 18 0.00062 28.2 1.0 16 138-153 62-77 (129)
192 1qau_A Neuronal nitric oxide s 28.2 23 0.00077 26.5 1.5 14 139-152 46-59 (112)
193 3gsl_A Disks large homolog 4; 27.7 12 0.0004 30.3 -0.2 24 129-152 43-68 (196)
194 1ujd_A KIAA0559 protein; PDZ d 27.3 19 0.00066 27.4 1.0 16 138-153 68-83 (117)
195 3soe_A Membrane-associated gua 27.3 19 0.00066 28.4 1.0 18 136-153 48-65 (113)
196 2v8h_A Beta-alanine synthase; 27.0 1.3E+02 0.0045 28.2 6.9 31 101-131 127-159 (474)
197 3gsl_A Disks large homolog 4; 26.5 13 0.00046 30.0 -0.1 16 138-153 149-164 (196)
198 1nf3_C PAR-6B; semi-CRIB motif 26.4 14 0.00049 28.7 0.1 27 127-153 71-99 (128)
199 2yuy_A RHO GTPase activating p 25.5 16 0.00054 28.3 0.2 25 129-153 69-94 (126)
200 2plt_A Plastocyanin; electron 25.3 39 0.0013 24.5 2.3 25 134-159 11-35 (98)
201 1v6b_A Harmonin isoform A1; st 25.3 12 0.0004 28.9 -0.6 27 127-153 49-77 (118)
202 3o46_A Maguk P55 subfamily mem 24.9 27 0.00092 25.2 1.4 15 138-152 47-61 (93)
203 2bfd_A 2-oxoisovalerate dehydr 24.1 2.2E+02 0.0076 26.7 7.9 77 105-189 200-285 (400)
204 1w9e_A Syntenin 1; cell adhesi 23.6 30 0.001 27.8 1.5 23 130-152 36-59 (166)
205 2fvg_A Endoglucanase; TM1049, 23.6 1.1E+02 0.0037 27.3 5.4 20 4-24 18-37 (340)
206 2k52_A Uncharacterized protein 22.9 59 0.002 23.3 2.9 37 122-165 29-68 (80)
207 2d92_A INAD-like protein; PDZ 22.6 29 0.00099 26.0 1.2 25 129-153 52-78 (108)
208 1v62_A KIAA1719 protein; struc 22.5 29 0.00098 26.5 1.1 16 138-153 61-76 (117)
209 1plc_A Plastocyanin; electron 22.4 47 0.0016 24.2 2.3 25 134-159 10-34 (99)
210 2zog_A Cytosolic non-specific 22.2 82 0.0028 29.3 4.5 34 98-131 135-171 (479)
211 1w9e_A Syntenin 1; cell adhesi 21.8 20 0.00068 28.8 0.1 24 129-152 115-139 (166)
212 3rle_A Golgi reassembly-stacki 21.7 23 0.00079 29.9 0.5 28 128-158 119-148 (209)
213 1b8q_A Protein (neuronal nitri 21.4 24 0.00083 27.1 0.5 15 138-152 51-66 (127)
214 1giy_D 50S ribosomal protein L 21.1 1.2E+02 0.0042 26.0 4.9 25 52-83 15-39 (178)
215 3pv2_A DEGQ; trypsin fold, PDZ 21.0 21 0.00071 34.2 0.1 26 128-153 289-315 (451)
216 1ky9_A Protease DO, DEGP, HTRA 20.8 38 0.0013 32.3 1.9 28 126-153 291-319 (448)
217 3dlj_A Beta-Ala-His dipeptidas 20.8 91 0.0031 29.3 4.5 35 98-132 142-179 (485)
218 3owt_C Regulatory protein SIR3 20.8 21 0.00071 21.5 0.0 11 182-192 6-16 (27)
219 1wfg_A Regulating synaptic mem 20.7 31 0.0011 27.0 1.0 15 138-152 84-98 (131)
220 2asb_A Transcription elongatio 20.6 89 0.0031 28.2 4.2 98 122-231 38-151 (251)
221 3k1r_A Harmonin; protein-prote 20.6 26 0.00089 29.1 0.6 16 138-153 128-143 (192)
222 1p1d_A PDZ45, glutamate recept 20.5 20 0.00069 29.6 -0.1 30 123-152 38-69 (196)
No 1
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=100.00 E-value=4.7e-101 Score=760.84 Aligned_cols=259 Identities=28% Similarity=0.411 Sum_probs=244.8
Q ss_pred CCcHHHHHHHHHhhcCCCC-eEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCC-CCCceEeeccce
Q psy6043 1 MAPPKVEEYILETFKNTPS-IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSS-PTSSLFLVGKGV 78 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~-v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~-~~~~iaLVGKGi 78 (282)
|||++||++++++++++++ ++|+|++++||+++|||+||+|||||. +|||||+|+|+|.+ + .++||+||||||
T Consensus 198 ~tP~~lA~~a~~la~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~----~pPrli~l~Y~g~~-~~~~~~i~LVGKGI 272 (503)
T 1gyt_A 198 CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQ----NESLMSVIEYKGNA-SEDARPIVLVGKGL 272 (503)
T ss_dssp CSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSS----SCCEEEEEEEECCC-CTTCCCEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEcHHHHHHCCCCceeeecccCC----CCCeEEEEEECCCC-CCCCCcEEEEcCce
Confidence 8999999999999999876 999999999999999999999999986 89999999999976 4 578999999999
Q ss_pred EEccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCC
Q psy6043 79 TYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTD 158 (282)
Q Consensus 79 TFDsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTD 158 (282)
|||||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||
T Consensus 273 TFDsGGislKp~~~M~~MK~DM~GAAaVlg~~~aia~l~l~vnV~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTD 352 (503)
T 1gyt_A 273 TFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTD 352 (503)
T ss_dssp EEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTT
T ss_pred EecCCCccccCCcChhhcccccchHHHHHHHHHHHHHcCCCeeEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCC
Q psy6043 159 AEGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIR 237 (282)
Q Consensus 159 AEGRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~ 237 (282)
|||||||||+|+||+ +++| .|||+|||||||++|||++++|+|+||+ +|+++|++||+++||++|||||+
T Consensus 353 AEGRLVLADaL~yA~-----~~~P~~iID~ATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~ge~~WrmPl~ 423 (503)
T 1gyt_A 353 AEGRLVLCDVLTYVE-----RFEPEAVIDVATLTGACVIALGHHITGLMANHN----PLAHELIAASEQSGDRAWRLPLG 423 (503)
T ss_dssp CCHHHHHHHHHHHGG-----GGCCSEEEEEECCCHHHHHHHTTTSEEEEESCH----HHHHHHHHHHHHHTCCEEECCCC
T ss_pred cchhhHhHHHHHHHH-----HcCCCEEEEhhhhHHHHHHHhCCCceEEEeCCH----HHHHHHHHHHHHhCCceeeCCCC
Confidence 999999999999996 3789 7999999999999999999999999995 69999999999999999999996
Q ss_pred chhhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 238 REDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 238 ~~~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+ +|+ ..++|++|||+|++. +.+|+||||+||++|.+
T Consensus 424 ~-~y~-~~l~S~~ADl~N~g~-----~~~GsitAA~FL~~Fv~ 459 (503)
T 1gyt_A 424 D-EYQ-EQLESNFADMANIGG-----RPGGAITAGCFLSRFTR 459 (503)
T ss_dssp H-HHH-GGGCCSSSSEESCCC-----STTHHHHHHHHHHTTCT
T ss_pred H-HHH-HHcCCchhhhcCCCC-----CCCchhHHHHHHHHhCC
Confidence 5 443 567899999999862 46899999999999975
No 2
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=100.00 E-value=1.5e-99 Score=746.94 Aligned_cols=261 Identities=29% Similarity=0.362 Sum_probs=243.6
Q ss_pred CCcHHHHHHHHHhhcCCCC-eEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceE
Q psy6043 1 MAPPKVEEYILETFKNTPS-IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~-v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiT 79 (282)
|||++||++++++++++++ ++|+|++++||+++||++||+|||||+ +|||||+|+|+|.+.+.++||+|||||||
T Consensus 178 ~tP~~lA~~a~~l~~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~----~pPrli~l~y~g~~~~~~~~i~LVGKGIT 253 (484)
T 1lam_A 178 MTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSE----EPPVFLEIHYKGSPNASEPPLVFVGKGIT 253 (484)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSS----SCCEEEEEEEECSSSTTSCCEEEEECEEE
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEEEeHHHHHHCCCCceeeeccCCC----CCCeEEEEEECCCCCCCCCcEEEEecceE
Confidence 8999999999999999876 999999999999999999999999986 89999999999864124578999999999
Q ss_pred EccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCc
Q psy6043 80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDA 159 (282)
Q Consensus 80 FDsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDA 159 (282)
||||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.||||
T Consensus 254 FDsGG~slKp~~~M~~MK~DMgGAAaVlg~~~aia~l~l~vnv~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDA 333 (484)
T 1lam_A 254 FDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDA 333 (484)
T ss_dssp EECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTC
T ss_pred EcCCCcCCcCccchhhhhccchHHHHHHHHHHHHHHcCCCeeEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCc
Q psy6043 160 EGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRR 238 (282)
Q Consensus 160 EGRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~ 238 (282)
||||||||+|+||+ +++| .|||+|||||||++|||++++|+|+||+ +|++++++||+++|||+||||| +
T Consensus 334 EGRLVLADaL~yA~-----~~~p~~iiD~ATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~ge~~WrlPl-~ 403 (484)
T 1lam_A 334 EGRLILADALCYAH-----TFNPKVIINAATLTGAMDIALGSGATGVFTNSS----WLWNKLFEASIETGDRVWRMPL-F 403 (484)
T ss_dssp CHHHHHHHHHHHHH-----TTCCSEEEEEECCCHHHHHHHTTSCEEEEESCH----HHHHHHHHHHHHHSCCEEECCC-C
T ss_pred cceeeehhHHHHhh-----hcCCCEEEEecchHHHHHHHhCCCceEEEeCCH----HHHHHHHHHHHHHCCcEeecCC-C
Confidence 99999999999996 4799 6999999999999999999999999995 6999999999999999999999 4
Q ss_pred hhhhhccCCCC-chhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 239 EDFRFFKSKCE-GEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 239 ~~~~~~~~~s~-~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
++|+ ..++|+ +|||+|++. .+.+||||||+||++|.+
T Consensus 404 ~~y~-~~l~s~~~ADl~N~g~----~~~~GsitAA~FL~~Fv~ 441 (484)
T 1lam_A 404 EHYT-RQVIDCQLADVNNIGK----YRSAGACTAAAFLKEFVT 441 (484)
T ss_dssp HHHH-HHHHCCSSSSEESSCS----SSTTHHHHHHHHHHTTCC
T ss_pred HHHH-HhcCCCCEeeeeCCCC----CCCcchHHHHHHHHHhCC
Confidence 5665 456676 999999873 246899999999999975
No 3
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=100.00 E-value=6.6e-99 Score=743.31 Aligned_cols=259 Identities=29% Similarity=0.403 Sum_probs=245.1
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|++||++++++++++++++|+|++++|++++||++||+|||||. +|||||+|+|+|.+ +.+++|+||||||||
T Consensus 197 ~~P~~~a~~a~~l~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~----~pPrli~l~y~g~~-~~~~~i~LVGKGiTF 271 (497)
T 3h8g_F 197 CHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSD----QPPRLIVLNYQGGK-KADKPFVLVGKGITF 271 (497)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEECHHHHHHTTCHHHHHHHTTSS----SCCEEEEEEEECSC-TTSCCEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEEccCCC----CCCEEEEEEECCCC-CCCCcEEEEcCceEe
Confidence 8999999999999999933999999999999999999999999986 89999999999976 567899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||||
T Consensus 272 DsGG~slKp~~~M~~Mk~DM~GAAaV~g~~~a~a~l~l~vnv~~~i~~~ENm~~g~A~rPgDVit~~~G~TVEV~NTDAE 351 (497)
T 3h8g_F 272 DTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAE 351 (497)
T ss_dssp ECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTCC
T ss_pred ccCCccCCCccchhhccccchHHHHHHHHHHHHHHcCCCeEEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEecCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||+ +++| .|||+|||||||++|||++++|+|+|++ +|++++++||+++||++|||||+ +
T Consensus 352 GRLvLADaL~ya~-----~~~p~~iiD~ATLTGa~~vALG~~~~g~~sn~d----~l~~~l~~ag~~~ge~~WrlPl~-~ 421 (497)
T 3h8g_F 352 GRLVLCDTLTYAE-----RFKPQAVIDIATLTGACIVALGSHTTGLMGNND----DLVGQLLDAGKRADDRAWQLPLF-D 421 (497)
T ss_dssp HHHHHHHHHHHHG-----GGCCSEEEEEECCCHHHHHHHTTTSEEEEESCH----HHHHHHHHHHHHHTCCEEECCCC-H
T ss_pred hhhhhHHHHHHHH-----hcCCCEEEEecccHHHHHHHhCCCceEEEECCH----HHHHHHHHHHHHhCCCeEeCCCC-H
Confidence 9999999999995 4799 6999999999999999999999999985 69999999999999999999984 5
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+ ..++|++|||+|++. +.+|+||||+||++|.+
T Consensus 422 ~y~-~~l~S~~ADl~N~g~-----~~~g~itAA~FL~~Fv~ 456 (497)
T 3h8g_F 422 EYQ-EQLDSPFADMGNIGG-----PKAGTITAGCFLSRFAK 456 (497)
T ss_dssp HHH-GGGCCSSSSEESCCC-----SSSHHHHHHHHHHTTCT
T ss_pred HHH-HhcCCCeeceeCCCC-----CchhhHHHHHHHHHhCC
Confidence 565 567999999999872 47899999999999975
No 4
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=100.00 E-value=4.8e-99 Score=742.29 Aligned_cols=260 Identities=27% Similarity=0.382 Sum_probs=227.6
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|++||++++++++++++++|+|++++|++++||++||+|||||. +|||||+|+|+|.+ +.+++|+||||||||
T Consensus 181 ~~P~~~a~~a~~l~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~----~pPrli~l~y~g~~-~~~~~i~LVGKGiTF 255 (486)
T 3pei_A 181 CTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGSY----MSNYTVCMEYKGGN-EGDAPIVLVGKGLVF 255 (486)
T ss_dssp SCHHHHHHHHHHHHHTCTTEEEEEECHHHHHHTTCHHHHHHHTTCS----SCCEEEEEEEECSC-TTSCCEEEEEEEEET
T ss_pred cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEeccCCC----CCCEEEEEEECCCC-CCCCcEEEEccceEE
Confidence 8999999999999999944999999999999999999999999986 89999999999976 567899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||||
T Consensus 256 DsGG~slKp~~~M~~Mk~DM~GAAaVlg~~~a~a~l~l~vnv~~~i~~~ENm~sg~A~rPgDVits~~G~TVEV~NTDAE 335 (486)
T 3pei_A 256 DNGGICIKQAAGMDSMKMDMGGVAAVMGTMKAIAMLNLPVNVVGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAE 335 (486)
T ss_dssp EECC------------EECSHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEC------CCTTEEEECTTCCEEEECCGGGH
T ss_pred ecCCcccCCccchhhhhccchHHHHHHHHHHHHHHcCCCcEEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEEeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||++ ++| .|||+|||||||++|||++++|+|+||+ +|++++++||+++||++|||||+ +
T Consensus 336 GRLvLADaL~ya~~-----~~p~~iiD~ATLTGA~~vALG~~~~g~~sn~d----~l~~~l~~ag~~~ge~~WrlPl~-~ 405 (486)
T 3pei_A 336 GRLVLCDTLTYIGK-----YKPKAVIDLATLTGAMIISLGDAYSGMFANSD----KLANSLEQAANASNDLIWRLPLH-K 405 (486)
T ss_dssp HHHHHHHHHHHGGG-----GCCSEEEEEECCCTHHHHHHTTSCEEEEESCH----HHHHHHHHHHHHHCCCEEECCCC-G
T ss_pred cceeehhHHHHHHh-----hCCCEEEEehhhHHHHHHHhCCCceEEEeCCH----HHHHHHHHHHHHHCCCeEeCCCC-H
Confidence 99999999999963 789 6999999999999999999999999985 69999999999999999999994 5
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+ +.++|++|||+|++. .+.+|+||||+||++|.+
T Consensus 406 ~y~-~~l~S~~ADl~N~g~----~~~~g~itAA~FL~~Fv~ 441 (486)
T 3pei_A 406 PYL-KKIESKVADMDNCGR----DRSAGSIVAALFLSKFTE 441 (486)
T ss_dssp GGG-GGGCCSSSSEESSCS----SSTTHHHHHHHHHHTTCT
T ss_pred HHH-HHCCCCeeeeeCCCC----CCCcchHHHHHHHHHhCC
Confidence 565 567999999999873 246899999999999974
No 5
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.1e-98 Score=739.86 Aligned_cols=260 Identities=29% Similarity=0.438 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|++||+++++++++++ ++|+|++++|++++||++|++|||||. +|||||+|+|+|.+ +.+++|+||||||||
T Consensus 214 ltP~~~a~~a~~~~~~~g-~~v~V~~~~~l~~~gmg~~laVg~gS~----~pPrli~l~y~g~~-~~~~~i~LVGKGiTF 287 (515)
T 3kzw_A 214 LTPQTFAEDIVNHFKNTK-VKVDVKDYDTLVSEGFGLLQAVGKGSK----HKPRLVTITYNGKD-KDEAPIALVGKGITY 287 (515)
T ss_dssp SCHHHHHHHHHHHSTTSS-CEEEEECHHHHHHTTCHHHHHHHTTSS----SCCEEEEEEEESSC-SSCCCEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhcC-cEEEEEcHHHHHHcCCCcEEEEccCCC----CCCEEEEEEECCCC-CCCCcEEEecCceEE
Confidence 899999999999999998 999999999999999999999999986 89999999999987 568899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||++++|+|||||||+|||||||||+||||||||.|||||
T Consensus 288 DsGG~slKp~~~M~~MK~DM~GAAaVlg~~~a~a~l~lpvnv~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAE 367 (515)
T 3kzw_A 288 DSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAE 367 (515)
T ss_dssp ECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSCEEEEEEEEEEECCCTTCCCTTCEEECTTSCEEECSCTTCC
T ss_pred ecCCcCCCCccChhhchhchHHHHHHHHHHHHHHHcCCCceEEEEEEeeccCCCCCCCCCCCEEEeCCCCEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||+ +++| .|||+|||||||++|||++++|+|+|++ |+|++++.+||+++||++|||||+ +
T Consensus 368 GRLvLADaL~yA~-----~~~p~~iiD~ATLTGA~~vALG~~~ag~~~~n~---d~l~~~l~~a~~~~ge~~WrlPl~-~ 438 (515)
T 3kzw_A 368 GRLVLADAVFYAN-----QYQPSVIMDFATLTGAAIVALGDDKAAAFESNS---KVILNDILQISSEVDEMVFELPIT-A 438 (515)
T ss_dssp HHHHHHHHHHHHH-----TTCCSEEEEEECCCHHHHHHHCTTCEEEEEESC---HHHHHHHHHHHHHTTCCEEECCCC-H
T ss_pred hheehHHHHHHHh-----hcCCCEEEEeecchHHHHHHcCCceeEEeeCCh---HHHHHHHHHHHHHhCCceecCCCC-H
Confidence 9999999999996 4799 6999999999999999999999998653 469999999999999999999995 4
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+....+|++|||+|++. +++|+||||+||++|.+
T Consensus 439 ~y~~~l~~S~vADl~N~g~-----~~ggaitAA~FL~~Fv~ 474 (515)
T 3kzw_A 439 TERASIKHSDIADLVNHTN-----GQGKALFAASFVTHFSG 474 (515)
T ss_dssp HHHHHTTCCSSSSEESCCS-----SSCHHHHHHHHHHGGGT
T ss_pred HHHHhhcCCCcccccCCCC-----CchhhHHHHHHHHHhCC
Confidence 5554445899999999873 36899999999999975
No 6
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=100.00 E-value=5.2e-98 Score=735.53 Aligned_cols=258 Identities=27% Similarity=0.389 Sum_probs=243.8
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|++||++++++++++++++|+|++++|++++||++||+|||||+ +|||||+|+|+|.+ .+++|+||||||||
T Consensus 193 ~~P~~~a~~a~~~~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~----~pPrli~l~y~g~~--~~~~i~LVGKGiTF 266 (490)
T 3jru_B 193 CTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSA----NRPRLIVLKWNGGG--DARPYVLVGKGITF 266 (490)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEEEECHHHHHHTTCHHHHHHHHTCS----SCCEEEEEEEETTT--TSCCEEEEECEEEE
T ss_pred cCHHHHHHHHHHHHhhcCCCeEEEEcHHHHHhCCCCcEEEEccCCC----CCCEEEEEEEcCCC--CCCcEEEEcCeeEe
Confidence 8999999999999999834999999999999999999999999986 89999999999986 56899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||||
T Consensus 267 DsGG~slKp~~~M~~Mk~DM~GAAaV~g~~~a~a~l~l~vnv~~~i~~~ENm~sg~A~rPgDVit~~~G~TVEV~NTDAE 346 (490)
T 3jru_B 267 DTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPINLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAE 346 (490)
T ss_dssp ECCTTSCCCSSCGGGGGGGGHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCC
T ss_pred cCCCccCCCcccHhhCcccchHHHHHHHHHHHHHHcCCCcEEEEEEEeeccCCCCCCCCCCCEEEecCCcEEEecCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||+ +++| .|||+|||||||++|||++++|+|+||+ +|++++++||+++||++|||||+ +
T Consensus 347 GRLvLADaL~ya~-----~~~p~~iiD~ATLTGa~~vALG~~~~g~~sn~d----~l~~~l~~ag~~~ge~~WrlPl~-~ 416 (490)
T 3jru_B 347 GRLILCDALTYAE-----RFNPEALVDVATLTGACMVALGHQTAGLMSKHD----DLANELLAAGEHVFDRAWRLPLW-D 416 (490)
T ss_dssp HHHHHHHHHHHHG-----GGCCSEEEEEECCCHHHHHHHTTTCEEEEESCH----HHHHHHHHHHHHTTCCEEECCCC-G
T ss_pred HhHHHHHHHHHHh-----hcCCCEEEEEcchHHHHHHHhCCCcEEEEeCCH----HHHHHHHHHHHHhCCceEeCCCC-H
Confidence 9999999999995 4799 7999999999999999999999999985 69999999999999999999995 4
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+ +.++|++|||+|++. +++|+||||+||++|..
T Consensus 417 ~y~-~~l~S~~ADl~N~g~-----~~~g~itAA~FL~~Fv~ 451 (490)
T 3jru_B 417 EYQ-GLLDSTFADVYNIGG-----RWGGAITAGCFLSRFTE 451 (490)
T ss_dssp GGG-GGGCCSSSSEESCCC-----SSCHHHHHHHHHHTTCT
T ss_pred HHH-hhcCCCeeeeeCCCC-----CchHHHHHHHHHHHhCC
Confidence 554 567999999999872 46899999999999964
No 7
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=100.00 E-value=2.2e-98 Score=738.87 Aligned_cols=264 Identities=25% Similarity=0.361 Sum_probs=246.7
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|+.||+++++++++++ ++|+|++++||+++||++||+|||||. +|||||+|+|+|.+ +.+++|+||||||||
T Consensus 221 ~tP~~lA~~a~~l~~~~g-v~v~Vl~~~~l~~~gmg~~laVg~GS~----~pPrli~L~Y~g~~-~~~~~iaLVGKGITF 294 (522)
T 4efd_A 221 LTTATFTEIAQGYAKALG-FDVDVICGDDLCERGYGGIYSVGKAAF----EAPRLVTLLYTPKG-TPVKKVSLVGKGIVY 294 (522)
T ss_dssp SCHHHHHHHHHHHHHHHT-CEEEEEETHHHHHHTCHHHHHHHTTSS----SCCEEEEEEECCSS-CCSEEEEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHcC-CEEEEEeHHHHHHcCCCcEEeeccCCC----CCCEEEEEEECCCC-CCCCcEEEecCceEe
Confidence 899999999999999998 999999999999999999999999986 89999999999987 567899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||||
T Consensus 295 DSGGlsLKp~~~M~~MK~DMgGAAaVlga~~a~a~l~lpvnV~~vl~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAE 374 (522)
T 4efd_A 295 DCGGLALKPADYMKLMKHDMGGAAAVFCGFLTAVRLQQPVQLSCTLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTDAE 374 (522)
T ss_dssp CCCCSSSCHHHHHHHGGGTTHHHHHHHHHHHHHHHHTCSEEEEEEEEEEECCC-CCSTTTTEEEECTTSCEEEESCTTCC
T ss_pred ecCCccCCCccchhhcccccchHHHHHHHHHHHHHcCCCceEEEEEEEeccCCCCCCCCCCCEEEecCCcEEEeccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||++. .+|+| .|||+|||||||++|||++++|+|+||+ +|++++++||+++||++|||||+ +
T Consensus 375 GRLVLADaL~yA~~~--~~~~P~~iIDiATLTGA~~vALG~~~agvfsndd----~l~~~l~~Ag~~~gE~~WrlPl~-~ 447 (522)
T 4efd_A 375 GRIVLGDGVFHATNE--LSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEE----GAEAAMLRAGRESGETCFPVLYC-P 447 (522)
T ss_dssp HHHHHHHHHHHHHHT--SSSCCSEEEEEECCCTHHHHHHCSSCEEEEESCH----HHHHHHHHHHHHHSCCEEECCCC-H
T ss_pred hhhhHHHHHHHhhhc--cccCCCEEEeeccchhhHHhhcCCCceEEeeCCH----HHHHHHHHHHHhhCCCCcccCCC-H
Confidence 999999999999752 24789 7999999999999999999999999995 69999999999999999999995 4
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|++..++|++|||+|++.. +..+|+++||+||++|..
T Consensus 448 ~y~~~~l~S~vADl~N~g~~---~~~aGsitAA~FL~~Fv~ 485 (522)
T 4efd_A 448 EYHEPEFKSNHADMTNLMER---RDNAGVSCAGYFITTHLS 485 (522)
T ss_dssp HHHGGGGCCSSSSEESSCSS---SSSCHHHHHHHHHHTTSC
T ss_pred HHHHhhcCCCeeeeeCCCCC---CCCccHHHHHHHHHHhcC
Confidence 56666789999999998742 235799999999999863
No 8
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=100.00 E-value=1.8e-97 Score=731.36 Aligned_cols=262 Identities=26% Similarity=0.321 Sum_probs=244.8
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|+.||+++++++++++ ++|+|++++|++++||++||+|||||+ +|||||+|+|+|.+ .+++|+||||||||
T Consensus 184 ~tP~~~a~~a~~~~~~~g-~~v~V~~~~~l~~~gmg~~laVg~gS~----~pPrli~l~y~~~~--~~~~i~LVGKGiTF 256 (491)
T 2hc9_A 184 LTTDALVDEAVKVGNATG-SKITVIRGEELLKAGFGGIYHVGKAGP----TPPAFVVLSHEVPG--STEHIALVGKGVVY 256 (491)
T ss_dssp SCHHHHHHHHHHHHHHTT-CEEEEEETHHHHHHTCHHHHHHHTTSS----SCCEEEEEEECCTT--CSCEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcC-cEEEEEeHHHHHhCCCCcEEEecccCC----CCCEEEEEEeCCCC--CCCcEEEEcCceEe
Confidence 899999999999999998 999999999999999999999999986 89999999999976 35799999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|.+||+||+|||+|+|+|++++++++|+||++++|+|||||||+|||||||||+||||||||.|||||
T Consensus 257 DsGG~slKp~~~M~~Mk~DM~GAAaVlg~~~a~a~l~l~vnv~~~l~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAE 336 (491)
T 2hc9_A 257 DTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAE 336 (491)
T ss_dssp ECCTTSCCCTTTSTTGGGGGHHHHHHHHHHHHHHTTTCCSEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCTTCC
T ss_pred cCCCccCCCCcChhhccccccHHHHHHHHHHHHHHcCCCceEEEEEEeeecCCCCCCCCCCCEEEeCCCcEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||++ +++| .|||+|||||||++|||++++|+|+|++ +|++++++||+++||++||||+++
T Consensus 337 GRLvLADaL~yA~~----~~~p~~iiD~ATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~ge~~WrlPl~~- 407 (491)
T 2hc9_A 337 GRLILADGVFYAKE----TLKATTIFDMATLTGAQAWLSGRLHGAAMTNDE----QLENEIIKAGKASGDLVAPMLFAP- 407 (491)
T ss_dssp HHHHHHHHHHHHHH----TTCCSEEEEEECCCTTHHHHHTTTSEEEEESCH----HHHHHHHHHHHHHSCCEEECCCCH-
T ss_pred ceeeehhHHHHHhh----hcCCCEEEEecchHHHHHHHhCCCcEEEEECcH----HHHHHHHHHHHHhCCcEecCCCCh-
Confidence 99999999999975 4789 7999999999999999999999999985 699999999999999999999954
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+++.++|++|||+|++.. .+..+|+++||+||.+|.+
T Consensus 408 ~~~~~~l~S~~ADl~N~~~~--~~~~~gs~tAa~FL~~fv~ 446 (491)
T 2hc9_A 408 DLFFGDLKSSIADMKNSNLG--KMDGPPSAVAGLLIGAHIG 446 (491)
T ss_dssp HHHGGGGCCSSSSEESCCSS--CCSSCHHHHHHHHHHTTTG
T ss_pred HHHHHhcCCchhhhcCCCCC--CCCCCcHHHHHHHHHhhCC
Confidence 44557789999999998521 1224799999999999863
No 9
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=100.00 E-value=3.3e-97 Score=731.90 Aligned_cols=259 Identities=25% Similarity=0.357 Sum_probs=243.7
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|||++||+++++++++++ ++|+|++++||+++|||+||+|||||. +|||||+|+|+|.+ +.+++|+||||||||
T Consensus 222 ltP~~lA~~a~~la~~~g-~~v~Vl~~~~l~~~gmg~~laVg~GS~----~pPrli~l~y~g~~-~~~~~iaLVGKGITF 295 (528)
T 3kr4_A 222 CNPVSLSNAAVELAQKLN-LEYKILGVKELEELKMGAYLSVGKGSM----YPNKFIHLTYKSKG-DVKKKIALVGKGITF 295 (528)
T ss_dssp SCHHHHHHHHHHHHHHHT-CEEEEECHHHHHHTTCHHHHHHGGGCS----SCCEEEEEEEECSS-CCCEEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcC-CeEEEeeHHHHHhcCCCeEEeeccCCC----CCCEEEEEEEcCCC-CCCCcEEEecCceEe
Confidence 799999999999999998 999999999999999999999999986 89999999999987 567899999999999
Q ss_pred ccCCCCCCCCCC--cccCccCcchHHHHHHHHHHHHhcCC-CeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCC
Q psy6043 81 DTGGADIKISGN--MAGMARDKCGAAVVAGFMKAVAMLQP-KVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNT 157 (282)
Q Consensus 81 DsGG~slKp~~~--M~~Mk~DM~GAAaV~ga~~a~a~l~~-~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NT 157 (282)
|||||||||+.+ |.+||+||+|||+|+|+|++++++++ |+||++++|+|||||||+|||||||||+||||||||.||
T Consensus 296 DsGG~slKp~~g~~M~~MK~DM~GAAaVlg~~~aia~l~~~~vnv~~vi~~~ENm~sg~A~rPgDVit~~~GkTVEV~NT 375 (528)
T 3kr4_A 296 DSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNT 375 (528)
T ss_dssp ECCTTSCSCSTTCCGGGGGGGGHHHHHHHHHHHHHHHHCCSSEEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCT
T ss_pred ecCCcccCCCCCcCHHHhhcCcchHHHHHHHHHHHHhcCCCCceEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEEecC
Confidence 999999999865 99999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred CcccceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcC
Q psy6043 158 DAEGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRI 236 (282)
Q Consensus 158 DAEGRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl 236 (282)
||||||||||+|+||++ ++| .|||+|||||||++|||++++|+|+|++ +|++++.+||+++||++|||||
T Consensus 376 DAEGRLvLADaL~yA~~-----~~p~~iID~ATLTGA~~vALG~~~agv~sn~d----~l~~~l~~Ag~~~ge~~WrlPl 446 (528)
T 3kr4_A 376 DAEGRLTLADALVYAEK-----LGVDYIVDIATLTGAMLYSLGTSYAGVFGNNE----ELINKILQSSKTSNEPVWWLPI 446 (528)
T ss_dssp TCCHHHHHHHHHHHHHH-----TCCSEEEEEECCCTTHHHHTTTTCEEEEESCH----HHHHHHHHHHHHHTCCEEECCC
T ss_pred CchhhhhhHHHHHHHHh-----hCCCEEEEeecchHHHHHHhCCCceEEEeCCH----HHHHHHHHHHHHcCCcEEeCCC
Confidence 99999999999999964 689 7999999999999999999999999995 6999999999999999999999
Q ss_pred CchhhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 237 RREDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 237 ~~~~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
++ +|+ +.++|++|||+|++. ++++|+||||+||++|.+
T Consensus 447 ~~-~y~-~~l~S~vADl~N~g~----~~~agsitAA~FL~~Fv~ 484 (528)
T 3kr4_A 447 IN-EYR-ATLNSKYADINQISS----SVKASSIVASLFLKEFVQ 484 (528)
T ss_dssp CG-GGG-GGGCCSSSSEESSCS----SCCCHHHHHHHHHHTTCS
T ss_pred CH-HHH-hhcCCceeccccCCC----CCCcHHHHHHHHHHHhCC
Confidence 54 454 567999999999873 246899999999999964
No 10
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=100.00 E-value=6.1e-97 Score=724.43 Aligned_cols=256 Identities=32% Similarity=0.449 Sum_probs=240.9
Q ss_pred CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY 80 (282)
Q Consensus 1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF 80 (282)
|+|+.||+++++++++++ ++|+|+++++ +++||++|++|||||+ +|||||+|+|.++ .+++|+||||||||
T Consensus 184 ~tP~~~A~~a~~la~~~g-~~v~V~~~~~-~~~gmg~~laVg~GS~----~pPrli~l~y~~~---~~~~i~LVGKGITF 254 (482)
T 3ij3_A 184 MGPSELAQAVKHVAKEFE-AKVKIIESKD-LETEFPAIYAVGRAGS----RPPLLIDLKWGDI---KAPKVTLVGKGVCF 254 (482)
T ss_dssp SSHHHHHHHHHHHHHHHT-CEEEEEEHHH-HHHHCHHHHHHHTTSS----SCCEEEEEEESCT---TSCEEEEEECEEEE
T ss_pred cCHHHHHHHHHHHHHHcC-CeEEEEchHH-HHcCCCcEEEEccCCC----CCCEEEEEEeCCC---CCCeEEEEccceEe
Confidence 899999999999999998 9999999999 8999999999999986 8999999999532 46899999999999
Q ss_pred ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043 81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE 160 (282)
Q Consensus 81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE 160 (282)
|||||||||+.+|..||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||||
T Consensus 255 DsGGlslKp~~~M~~MK~DMgGAAaVlg~~~aia~l~lpvnv~~ii~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAE 334 (482)
T 3ij3_A 255 DSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAE 334 (482)
T ss_dssp ECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCC
T ss_pred ecCCccCcCccchhhccccchHHHHHHHHHHHHHHcCCCceEEEEEEeeccCCCCCCCCCCCEEEeCCCCEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043 161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239 (282)
Q Consensus 161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~ 239 (282)
|||||||+|+||+ +++| .|||+|||||||++|||++++|+|+||+ +|++++++||+++||++|||||+ +
T Consensus 335 GRLVLADaL~yA~-----~~~P~~iID~ATLTGA~~vALG~~~agv~sn~d----~l~~~l~~Ag~~~ge~~WrlPl~-~ 404 (482)
T 3ij3_A 335 GRVVLADALAEAV-----KEDPDLIIDFSTLTGAARIALGPNLPALFANQD----SLAQALIDASLKTDDPLWRLPLF-Q 404 (482)
T ss_dssp HHHHHHHHHHHHH-----TTCCSEEEEEEECCSGGGCTTCTTSCEEEESSH----HHHHHHHHHHHHHTCCCEECCCC-G
T ss_pred hhhhhHHHHHHHH-----hcCCCEEEEecchhhhHHHHhCCCceEEEeCCH----HHHHHHHHHHHHHCCceeeCCCC-H
Confidence 9999999999996 4799 7999999999999999999999999985 69999999999999999999995 4
Q ss_pred hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280 (282)
Q Consensus 240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~ 280 (282)
+|+ ..++|++|||+|++. .+.+|+||||+||++|.+
T Consensus 405 ~y~-~~l~S~vADl~N~g~----~~~~GsitAA~FL~~Fv~ 440 (482)
T 3ij3_A 405 PYR-NYLKSEVADLTNSSQ----NRMAGAITAALFLQHFVS 440 (482)
T ss_dssp GGG-GGGCCSSSSEESSCS----SSSCHHHHHHHHHHTTSC
T ss_pred HHH-HhcCCCeeeeeCCCC----CCCcchhHHHHHHHHHcC
Confidence 554 567999999999873 247899999999999975
No 11
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=74.85 E-value=1.3 Score=33.16 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.7
Q ss_pred eeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
+.+|.|....+++||+|++.||+.|.
T Consensus 8 V~~~spA~~GL~~GD~I~~InG~~v~ 33 (91)
T 2kjp_A 8 VVENMPAKGKIEVGDKIISADGKNYQ 33 (91)
T ss_dssp CCCSSCCSSCCCSSCEEEEETTBCCS
T ss_pred ECCCChHHHcCCCCCEEEEECCEECC
Confidence 45677776689999999999999884
No 12
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=74.26 E-value=11 Score=34.43 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchHHHhccCC-hhhHhhhccCCCCCCCceEEEEEecCC-CCCC---CCceEeeccce
Q psy6043 4 PKVEEYILETFKNTPSIKINIIKDPKILDKEYP-LFSAVNRAASVIDRHQGRVIFLEYEPT-SSSP---TSSLFLVGKGV 78 (282)
Q Consensus 4 ~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~-~~laVg~gS~~~s~~~p~~v~l~Y~~~-~~~~---~~~iaLVGKGi 78 (282)
.+.++++++.+++.+ +++++.+... .+++ .+++.=+|+ .+|.++...+-.. +... ..|....+ |.
T Consensus 42 ~~~~~~l~~~l~~~G-~~~~~~~~~~---~~~~~~v~a~~~g~-----~~~~i~l~aH~D~vp~~~~~~~~Pf~~~~-g~ 111 (393)
T 1cg2_A 42 AAAGNFLEAELKNLG-FTVTRSKSAG---LVVGDNIVGKIKGR-----GGKNLLLMSHMDTVYLKGILAKAPFRVEG-DK 111 (393)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEECST---TCCSEEEEEEEECS-----SCCCEEEEEECCBSCCTTHHHHSCCEEET-TE
T ss_pred HHHHHHHHHHHHHcC-CeEEEEecCc---CCCCCeEEEEECCC-----CCceEEEEEecCcCCCCCccccCCeeeeC-CE
Confidence 357889999999998 8888764221 1222 344432332 1244444433221 1000 01222111 11
Q ss_pred EEccCCCCCCCCCCcccCccCc-chHHHHHHHHHHHHhcCC--CeEEEEeeeeeccC
Q psy6043 79 TYDTGGADIKISGNMAGMARDK-CGAAVVAGFMKAVAMLQP--KVRVVGALAVVRNS 132 (282)
Q Consensus 79 TFDsGG~slKp~~~M~~Mk~DM-~GAAaV~ga~~a~a~l~~--~vnV~~il~~~EN~ 132 (282)
.|=- + ..|| +|.|+.+.+++++.+.+. +.+|..++-..|-.
T Consensus 112 l~gr---------G----~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 155 (393)
T 1cg2_A 112 AYGP---------G----IADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEK 155 (393)
T ss_dssp EECT---------T----TTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred EEcC---------C----cccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEccccc
Confidence 1110 0 1355 577888999999998764 34787777766653
No 13
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=73.61 E-value=2.1 Score=31.62 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.5
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|-..+ +++||+|.+.||+.|+
T Consensus 36 V~~~spA~~aGL~~GD~I~~ing~~v~ 62 (93)
T 2dls_A 36 VRPGGAAMKAGVKEGDRIIKVNGTMVT 62 (93)
T ss_dssp ECSSSTTTTTTCCSSCEEEEETTEECS
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 4467777766 9999999999999873
No 14
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.75 E-value=2.7 Score=31.38 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.0
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.-+.+|.|...+ +++||+|.+.||+.|
T Consensus 35 ~~V~~~spA~~aGl~~GD~I~~ing~~v 62 (102)
T 2d90_A 35 KDIEPGSPAEAAGLKNNDLVVAVNGKSV 62 (102)
T ss_dssp ECCCTTSTTTTTTCCTTCEEEEESSCBC
T ss_pred EEECCCCHHHHcCCCCCCEEEEECCEEC
Confidence 344567777777 999999999999987
No 15
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=70.04 E-value=1.9 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.4
Q ss_pred eeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
...+|.|...++++||+|++.||+.|.
T Consensus 31 ~V~~~spA~~aL~~GD~Il~InG~~v~ 57 (125)
T 2hga_A 31 SVVPGSPASKVLTPGLVIESINGMPTS 57 (125)
T ss_dssp EECSSSGGGGTSCTTCEEEEETTEECS
T ss_pred EECCCChHHHhcCCCCEEEEECCEEcC
Confidence 345788877779999999999999873
No 16
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=69.16 E-value=1.3 Score=32.17 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.3
Q ss_pred eccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ ++|||+|.+.||+.|.
T Consensus 36 ~~~spA~~aGl~~GD~I~~ing~~v~ 61 (90)
T 2eaq_A 36 EAGSPAEFSQLQVDDEIIAINNTKFS 61 (90)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECC
T ss_pred CCCChHHHcCCCCCCEEEEECCEEcc
Confidence 355555444 9999999999999873
No 17
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=69.03 E-value=2.2 Score=31.88 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|....+++||+|.+.||+.|.
T Consensus 11 ~V~~~spA~~GL~~GD~Il~InG~~v~ 37 (94)
T 2kl1_A 11 SVLPNMPAAGRLEAGDRIAAIDGQPIN 37 (94)
T ss_dssp CCCTTSTTBTTBCTTCEEEEETTBCCC
T ss_pred EECCCChHHhCCCCCCEEEEECCEECC
Confidence 345677766679999999999999884
No 18
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=68.97 E-value=18 Score=34.51 Aligned_cols=92 Identities=10% Similarity=0.085 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhh-ccCCCCCCCceEEEEEecC---CCCC-CCCce-------E
Q psy6043 5 KVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNR-AASVIDRHQGRVIFLEYEP---TSSS-PTSSL-------F 72 (282)
Q Consensus 5 ~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~-gS~~~s~~~p~~v~l~Y~~---~~~~-~~~~i-------a 72 (282)
..++++.+.+++.+ ++++.++ + ++++.+ |+ ..|.++.+.+-. .+.. ...|. .
T Consensus 67 ~~~~~l~~~l~~~G-~~~~~~~-------~---~~~~~~~g~-----~~~~i~l~~H~D~vp~~~~w~~~Pf~~~~~~g~ 130 (492)
T 3khx_A 67 KALDYMYEIAHRDG-FTTHDVD-------H---IAGRIEAGK-----GNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDA 130 (492)
T ss_dssp HHHHHHHHHHHHTT-CEEEEET-------T---TEEEEEEEC-----SSCEEEEEEECCCCCCCSCCSSCTTSCEECSSE
T ss_pred HHHHHHHHHHHHcC-CcceEeC-------C---EEEEEEeCC-----CCCEEEEEEeccCCCCCCCcccCCCceEEECCE
Confidence 78999999999999 8887652 2 222222 32 245555554432 1100 01121 1
Q ss_pred eeccceEEccCCCCCCCCCCcccCccCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 73 LVGKGVTYDTGGADIKISGNMAGMARDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 73 LVGKGiTFDsGG~slKp~~~M~~Mk~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
|.|+|. .|| +|.|+.+.+++++.+.+ ++.+|+.++-..|=
T Consensus 131 l~GrG~-------------------~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 173 (492)
T 3khx_A 131 IIARGT-------------------LDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEE 173 (492)
T ss_dssp EESTTT-------------------TTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTT
T ss_pred EEecCC-------------------ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcc
Confidence 222331 455 78899999999999875 56788877777764
No 19
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=68.83 E-value=31 Score=28.62 Aligned_cols=31 Identities=6% Similarity=-0.029 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHHhcC--CCeEEEEeeeeec
Q psy6043 100 KCGAAVVAGFMKAVAMLQ--PKVRVVGALAVVR 130 (282)
Q Consensus 100 M~GAAaV~ga~~a~a~l~--~~vnV~~il~~~E 130 (282)
.+|.|+.+.+++++.+.+ ++.+|..++-..|
T Consensus 115 K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~E 147 (198)
T 1q7l_A 115 KCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDE 147 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCEEEEEEccc
Confidence 478888999999998765 5567765555444
No 20
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=68.65 E-value=1.9 Score=32.44 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=21.5
Q ss_pred eeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
-..+|.|....+++||+|++.||+.|.
T Consensus 13 ~V~~~spA~~GL~~GD~I~~Ing~~v~ 39 (100)
T 3i18_A 13 SVKDDVPAADVLHAGDLITEIDGNAFK 39 (100)
T ss_dssp EECTTSGGGGTCCTTCEEEEETTBCCS
T ss_pred EeCCCCchHHCCCCCCEEEEECCEECC
Confidence 345677766579999999999999873
No 21
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=67.88 E-value=1.8 Score=33.10 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.4
Q ss_pred eeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
-..+|.|...+ +++||+|.+.||+.|
T Consensus 44 ~V~~~spA~~aGL~~GD~I~~ing~~v 70 (114)
T 2edz_A 44 VIEEGSPAEKAGLLDGDRVLRINGVFV 70 (114)
T ss_dssp CCCTTCTTGGGTCCTTCEEEEESSSBC
T ss_pred EeCCCChHHHcCCCCCCEEEEECCEEC
Confidence 34567777666 999999999999987
No 22
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=66.93 E-value=1.3 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.0
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ ++|||+|.+.||+.|
T Consensus 41 ~~~spA~~aGl~~GD~I~~ing~~v 65 (98)
T 2jxo_A 41 DPDSPAEASGLRAQDRIVEVNGVCM 65 (98)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEEC
T ss_pred CCCCHHHHcCCCCCCEEEEECCEEC
Confidence 356555454 999999999999887
No 23
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=66.51 E-value=2.8 Score=29.94 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.1
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...+ +++||+|.+-||+.|+
T Consensus 30 V~~~spA~~aGl~~GD~I~~ing~~v~ 56 (83)
T 2kv8_A 30 VMRGSPADFVGLRAGDQILAVNEINVK 56 (83)
T ss_dssp CCTTSTTTTTTCCTTCEEEEETTEECS
T ss_pred eCCCChHHHcCCCCCCEEEEECCEECC
Confidence 3456666553 8999999999999873
No 24
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=66.14 E-value=1.3 Score=32.74 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.9
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
..+|.|...+ +++||+|.+.||+.|
T Consensus 37 V~~~spA~~aGl~~GD~I~~ing~~v 62 (96)
T 2v90_A 37 VDPGLPAKKAGMQAGDRLVAVAGESV 62 (96)
T ss_dssp ECTTSHHHHTTCCTTEEEEEETTEEC
T ss_pred ECCCChHHHcCCCCCCEEEEECCEEC
Confidence 3456665555 999999999999887
No 25
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=65.72 E-value=34 Score=30.72 Aligned_cols=112 Identities=7% Similarity=0.046 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEE-EecCCCC-CCCCceEeeccceEEc
Q psy6043 4 PKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFL-EYEPTSS-SPTSSLFLVGKGVTYD 81 (282)
Q Consensus 4 ~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l-~Y~~~~~-~~~~~iaLVGKGiTFD 81 (282)
...++++++.+++++ +++++.........+.+.+++.=+|+. ...|.++.. +|.--+. ..-+++ +=.|..|=
T Consensus 26 ~~~~~~l~~~l~~~G-~~v~~~~~~~~~~~~~~nv~a~~~g~~---~~~~~v~l~aH~D~vp~~~~~~p~--~~~g~~~g 99 (373)
T 3gb0_A 26 AEICKVLTKKFTDLG-VEVFEDDTMAVTGHGAGNLICTLPATK---DGVDTIYFTSHMDTVVPGNGIKPS--IKDGYIVS 99 (373)
T ss_dssp HHHHHHHHHHHHHTT-CEEEECSCHHHHCCSSCCEEEEECCSS---TTCCCEEEEEECCBCSSCSSCCCE--EETTEEEC
T ss_pred HHHHHHHHHHHHHCC-CEEEEeccccccCCCceeEEEEecCCC---CCCCEEEEEEECcccCCCCCcCcE--EECCEEEC
Confidence 457788889999998 887764322212233455655544531 123444443 3331110 011111 11122221
Q ss_pred cCCCCCCCCCCcccCccCc-chHHHHHHHHHHHHhcCC-CeEEEEeeeeec
Q psy6043 82 TGGADIKISGNMAGMARDK-CGAAVVAGFMKAVAMLQP-KVRVVGALAVVR 130 (282)
Q Consensus 82 sGG~slKp~~~M~~Mk~DM-~GAAaV~ga~~a~a~l~~-~vnV~~il~~~E 130 (282)
. +. + .|-.|| +|.|+.+++++++.+.+. +.+|..+.-..|
T Consensus 100 ~-------G~-~-~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~E 141 (373)
T 3gb0_A 100 D-------GT-T-ILGADDKAGLASMFEAIRVLKEKNIPHGTIEFIITVGE 141 (373)
T ss_dssp C-------SS-S-CCCHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESCG
T ss_pred C-------Cc-c-ccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Confidence 1 11 1 122477 788999999999988664 356655555454
No 26
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=65.15 E-value=4.6 Score=29.55 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=21.0
Q ss_pred eeeccCCCCCCCCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGENSYVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~a~~pgDVi~s~~GkTV 152 (282)
-+.+|.|....++|||+|.+-||+.|
T Consensus 41 ~V~~~spA~~gL~~GD~I~~vng~~v 66 (95)
T 1mfg_A 41 RVQPEGPASKLLQPGDKIIQANGYSF 66 (95)
T ss_dssp EECTTSTTTTTCCTTCEEEEETTEEC
T ss_pred EECCCCchhhCCCCCCEEEEECCEEc
Confidence 34467776668999999999999877
No 27
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=65.13 E-value=1.8 Score=31.61 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=19.0
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
..+|.|...+ ++|||+|.+.||+.|
T Consensus 34 V~~~spA~~aGl~~GD~I~~ing~~v 59 (91)
T 2pkt_A 34 VTPGSKAALANLCIGDVITAIDGENT 59 (91)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEEC
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEEC
Confidence 3455554433 999999999999887
No 28
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=64.66 E-value=1.5 Score=31.74 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.9
Q ss_pred ccCCCCCC-CCCCceEEccCCeEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+|.|...+ ++|||+|.+.||+.|
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v 59 (88)
T 2uzc_A 36 DGGKAAQANVRIGDVVLSIDGINA 59 (88)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEEC
T ss_pred CCChHHHcCCCCCCEEEEECCEEC
Confidence 45554333 999999999999877
No 29
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=64.49 E-value=30 Score=30.10 Aligned_cols=33 Identities=9% Similarity=-0.085 Sum_probs=22.5
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeec
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVR 130 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~E 130 (282)
.|| +|.|+++.+++++.+.+ ++.+|+.++-..|
T Consensus 102 ~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 137 (269)
T 4h2k_A 102 ADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDE 137 (269)
T ss_dssp TTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCS
T ss_pred ccChHHHHHHHHHHHHHHHhCCCCCccEEEEEEecc
Confidence 455 67888889999988764 4567765554444
No 30
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=63.93 E-value=3.8 Score=29.58 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.4
Q ss_pred ccCCCCCCCCCCceEEccCCeEE
Q psy6043 130 RNSCGENSYVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a~~pgDVi~s~~GkTV 152 (282)
+|.|....++|||+|.+.||+.|
T Consensus 35 ~~spA~aGl~~GD~I~~vng~~v 57 (88)
T 3bpu_A 35 VDSPRSRGLKEGDLIVEVNKKNV 57 (88)
T ss_dssp CC--CCTTCCTTCEEEEETTEEC
T ss_pred cCChhHhCCCCCCEEEEECCEEc
Confidence 67777756999999999999987
No 31
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=63.77 E-value=1.5 Score=33.37 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...+ ++|||+|++.||+.|.
T Consensus 42 V~~~spA~~aGl~~GD~I~~ing~~v~ 68 (113)
T 2pzd_A 42 VILGSPAHRAGLRPGDVILAIGEQMVQ 68 (113)
T ss_dssp EBTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred eCCCChHHHcCCCCCCEEEEECCEECC
Confidence 3456665555 9999999999999874
No 32
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=63.14 E-value=1.9 Score=31.17 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=18.3
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ ++|||+|.+.||+.|
T Consensus 34 ~~~spA~~aGL~~GD~I~~ing~~v 58 (87)
T 2pa1_A 34 AERGKAKDADLRPGDIIVAINGESA 58 (87)
T ss_dssp CSSSHHHHTTCCTTCEEEEETTEES
T ss_pred CCCChHHHcCCCCCCEEEEECCEEC
Confidence 345554444 899999999999876
No 33
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=62.52 E-value=4.7 Score=30.59 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=23.6
Q ss_pred CeEEEEeeeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
++-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 42 gv~V~~V---~~~s~A~~aGL~~GD~Il~vng~~v~ 74 (114)
T 1x5n_A 42 GIFISHV---KPGSLSAEVGLEIGDQIVEVNGVDFS 74 (114)
T ss_dssp SEEEEEE---CTTSTTTTTTCCTTCEEEEETTEETT
T ss_pred CEEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 4545443 457766665 9999999999999873
No 34
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=61.55 E-value=1.9 Score=31.82 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=19.9
Q ss_pred eeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
-..+|.|...+ ++|||+|.+.||+.|
T Consensus 36 ~V~~~spA~~aGL~~GD~I~~ing~~v 62 (94)
T 1vb7_A 36 KVTERGKAEAADLRPGDIIVAINGQSA 62 (94)
T ss_dssp CBCTTSSHHHHTCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHCCCCCCCEEEEECCEEC
Confidence 34456555555 899999999999887
No 35
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=61.29 E-value=1.9 Score=31.66 Aligned_cols=30 Identities=3% Similarity=0.071 Sum_probs=21.1
Q ss_pred eEEEEeeeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 120 VRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+-|..+ .+|.|...+ ++|||+|.+.||+.|
T Consensus 36 ~~V~~V---~~~spA~~aGl~~GD~I~~ing~~v 66 (97)
T 2w4f_A 36 IFISRV---SEEGPAARAGVRVGDKLLEVNGVAL 66 (97)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCEEEEETTEEC
T ss_pred EEEEEE---CCCChHHHcCCCCCCEEEEECCEEC
Confidence 444443 345554443 899999999999987
No 36
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=60.92 E-value=3.4 Score=30.99 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=20.9
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.-+.+|.|...+ +++||+|.+.||+.|
T Consensus 34 ~~V~~~spA~~aGL~~GD~I~~ing~~v 61 (103)
T 1v5l_A 34 TRITPGSKAAAANLCPGDVILAIDGFGT 61 (103)
T ss_dssp SCBCTTSTTGGGTCCTTCBEEEETTEEC
T ss_pred EEECCCCHHHHcCCCCCCEEEEECCEEC
Confidence 344566666644 899999999999887
No 37
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=60.71 E-value=2.4 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.9
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 35 ~~~spA~~aGL~~GD~I~~ing~~v 59 (91)
T 1g9o_A 35 EPGSPAEKAGLLAGDRLVEVNGENV 59 (91)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEEC
T ss_pred CCCCHHHHCCCCCCCEEEEECCEEC
Confidence 345555444 899999999999987
No 38
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=60.08 E-value=3.1 Score=30.40 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=18.4
Q ss_pred eccCCC---CC-CCCCCceEEccCCeEE
Q psy6043 129 VRNSCG---EN-SYVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~---~~-a~~pgDVi~s~~GkTV 152 (282)
.++.|+ .. .++|||+|++.||+.|
T Consensus 24 ~~~~~~s~A~~aGl~~GD~I~~ing~~v 51 (87)
T 2i6v_A 24 SPGKDPVLFESIGLQDGDMAVALNGLDL 51 (87)
T ss_dssp EECSCHHHHHHTTCCTTCEEEEETTEET
T ss_pred EeCCCCCHHHHCCCCCCCEEEEECCEEC
Confidence 455554 22 3899999999999987
No 39
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=59.83 E-value=5.7 Score=29.68 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.2
Q ss_pred eeccCCCCCCCCCCceEEccCCeEE
Q psy6043 128 VVRNSCGENSYVSDEVVVSRAGKRI 152 (282)
Q Consensus 128 ~~EN~i~~~a~~pgDVi~s~~GkTV 152 (282)
+.+|.|....++|||+|.+.||+.|
T Consensus 46 V~~~spA~agl~~GD~I~~vng~~v 70 (107)
T 2h2b_A 46 VLKGGPAEGQLQENDRVAMVNGVSM 70 (107)
T ss_dssp ECTTSTTBTTBCTTCEEEEETTEEC
T ss_pred ECCCCchhhCCCCCCEEEEECCEEC
Confidence 3456666655999999999999987
No 40
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=59.81 E-value=1.8 Score=32.48 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=19.6
Q ss_pred eccCCCCC-CCCCCceEEccCCeEEE
Q psy6043 129 VRNSCGEN-SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~-a~~pgDVi~s~~GkTVE 153 (282)
.+|.|... .+++||+|++.||+.|.
T Consensus 10 ~~~spA~~aGl~~GD~I~~ing~~v~ 35 (95)
T 3id1_A 10 AANSIAAEAQIAPGTELKAVDGIETP 35 (95)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECS
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 45665544 38999999999999874
No 41
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=59.72 E-value=32 Score=32.32 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=25.1
Q ss_pred cC-cchHHHHHHHHHHHHhc--CCCeEEEEeeeeecc
Q psy6043 98 RD-KCGAAVVAGFMKAVAML--QPKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~D-M~GAAaV~ga~~a~a~l--~~~vnV~~il~~~EN 131 (282)
.| .+|.|+.+.+++++.+. .++.+|..++-..|=
T Consensus 146 ~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 182 (481)
T 2pok_A 146 DDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEE 182 (481)
T ss_dssp TTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGG
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc
Confidence 45 46788999999999886 566777766665554
No 42
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.70 E-value=2 Score=33.51 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=22.7
Q ss_pred eEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 120 VRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+-|..+ .+|.|...+ +++||+|++.||+.|+
T Consensus 50 v~V~~V---~~~spA~~aG~l~~GD~I~~ing~~v~ 82 (124)
T 1wh1_A 50 IYISEI---DPNSIAAKDGRIREGDRIIQINGIEVQ 82 (124)
T ss_dssp EEEEEE---CSSSHHHHTCCCCTTCEEEEESSCBCC
T ss_pred EEEEEE---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 444443 456655555 9999999999999885
No 43
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=59.02 E-value=2.6 Score=31.12 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.9
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 45 ~~~spA~~aGL~~GD~I~~ing~~v 69 (96)
T 2ego_A 45 HESSPAQLAGLTPGDTIASVNGLNV 69 (96)
T ss_dssp CTTCHHHHTTCCTTCEEEEETTEEC
T ss_pred CCCChHHHcCCCCCCEEEEECCEEC
Confidence 455555444 999999999999987
No 44
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=58.94 E-value=2.5 Score=30.68 Aligned_cols=27 Identities=7% Similarity=0.330 Sum_probs=21.0
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|...+ ++|||+|.+.||+.|+
T Consensus 36 ~V~~~spA~~aggl~~GD~I~~ing~~v~ 64 (90)
T 1qav_A 36 KIFKGLAADQTEALFVGDAILSVNGEDLS 64 (90)
T ss_dssp EECTTSHHHHTTCCCTTEEEEEETTEECT
T ss_pred EECCCCHHHhcCCCCCCCEEEEECCEECC
Confidence 34466666654 8999999999999883
No 45
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.88 E-value=1.9 Score=32.12 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=22.1
Q ss_pred CeEEEEeeeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 37 gv~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 69 (100)
T 2eeh_A 37 GIFVSKV---EEGSSAERAGLCVGDKITEVNGLSLE 69 (100)
T ss_dssp CEEEEEE---CTTSHHHHHTCCSSCEEEEETTEECS
T ss_pred CEEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 4545443 345554444 8999999999999873
No 46
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=58.77 E-value=2 Score=31.15 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=17.9
Q ss_pred ccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v~ 60 (89)
T 2q3g_A 36 PGGKAAQAGVAVGDWVLSIDGENAG 60 (89)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEEGG
T ss_pred CCCHHHHcCCCCCCEEEEECCEECC
Confidence 44443332 9999999999999873
No 47
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=58.66 E-value=6.2 Score=30.20 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=23.7
Q ss_pred eeeeeccCCCCCC---CCCCceEEccCCeEEE
Q psy6043 125 ALAVVRNSCGENS---YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 125 il~~~EN~i~~~a---~~pgDVi~s~~GkTVE 153 (282)
|--+.+|.|...+ +++||+|.+.||+.|+
T Consensus 45 V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~ 76 (119)
T 2cs5_A 45 VSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76 (119)
T ss_dssp EEEECSSSTTTSSSSCCCTTCEEEEETTBCTT
T ss_pred EEEECCCCHHHHhhcCCCCCCEEEEECCEECC
Confidence 3445678888886 9999999999999873
No 48
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=58.63 E-value=2.1 Score=32.61 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...+ +++||+|++.||+.|.
T Consensus 42 V~~~spA~~aGl~~GD~I~~ing~~v~ 68 (112)
T 2p3w_A 42 VAPNSPSQRGGIQDGDIIVKVNGRPLV 68 (112)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred ECCCChHHHCCCCCCCEEEEECCEECC
Confidence 3456655443 9999999999999884
No 49
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=58.51 E-value=5.9 Score=29.58 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=23.1
Q ss_pred eeeeeccCCCCC-C-CCCCceEEccCCeEE
Q psy6043 125 ALAVVRNSCGEN-S-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 125 il~~~EN~i~~~-a-~~pgDVi~s~~GkTV 152 (282)
|--+.+|.|... + +++||+|.+.||+.|
T Consensus 41 V~~V~~~spA~~~ggl~~GD~I~~Ing~~v 70 (101)
T 2yt7_A 41 IANLLHGGPAERSGALSIGDRLTAINGTSL 70 (101)
T ss_dssp EEEECTTSTTGGGSSCCTTCEEEEESSCBC
T ss_pred EEEECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 445567888887 4 899999999999887
No 50
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=58.43 E-value=2.3 Score=31.35 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=20.5
Q ss_pred eeeeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 126 LAVVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 126 l~~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.-+.+|.|...+ ++|||+|.+.||+.|
T Consensus 42 ~~V~~~spA~~aG~L~~GD~I~~ing~~v 70 (98)
T 1ihj_A 42 KGIVPDSPAHLCGRLKVGDRILSLNGKDV 70 (98)
T ss_dssp EEECTTSHHHHHCSCCTTCEEEEETTEEC
T ss_pred EEECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 334456655554 899999999999987
No 51
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=58.33 E-value=5.5 Score=29.62 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=21.9
Q ss_pred eeeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
.-..+|.|....++|||+|.+-||+.|+
T Consensus 48 ~~V~~~spA~~gL~~GD~I~~vng~~v~ 75 (103)
T 1n7t_A 48 TRVQPEGPASKLLQPGDKIIQANGYSFI 75 (103)
T ss_dssp CCBSSSSTTSSSCCTTCEEEEETTEECS
T ss_pred EEECCCCchHHCCCCCCEEEEECCEECC
Confidence 3445677766689999999999998873
No 52
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=58.20 E-value=37 Score=31.57 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=25.8
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
.|| +|.|+.+++++++.+.+ ++.+|..++-..|=
T Consensus 118 ~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE 154 (470)
T 1lfw_A 118 ADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEE 154 (470)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTT
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcc
Confidence 566 88999999999998765 55677766666654
No 53
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=58.04 E-value=2.3 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.7
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.+...+ +++||+|.+-||+.|+
T Consensus 31 ~~~s~A~~aG~l~~GD~I~~ing~~v~ 57 (92)
T 3cyy_A 31 SQDSLAARDGNIQEGDVVLKINGTVTE 57 (92)
T ss_dssp CTTCHHHHSCCCCTTCEEEEETTEECT
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 345444433 8999999999999883
No 54
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=58.03 E-value=3.4 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=18.7
Q ss_pred eccCCC---CC-CCCCCceEEccCCeEE
Q psy6043 129 VRNSCG---EN-SYVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~---~~-a~~pgDVi~s~~GkTV 152 (282)
.++.|+ .. .++|||+|++.||+.|
T Consensus 42 ~~~~pas~A~~aGl~~GDvI~~ing~~v 69 (105)
T 2i4s_A 42 SPGKDPVLFESIGLQDGDMAVALNGLDL 69 (105)
T ss_dssp EECSCTHHHHHHTCCTTCEEEEETTEET
T ss_pred ecCCCCCHHHHcCCCCCCEEEEECCEEC
Confidence 456555 22 3899999999999988
No 55
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=57.43 E-value=2 Score=31.27 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=17.5
Q ss_pred ccCCCCCC-CCCCceEEccCCeEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+|.|...+ ++|||+|.+.||+.|
T Consensus 37 ~~spA~~aGl~~GD~I~~ing~~v 60 (90)
T 2he4_A 37 PGSPAARSGLRAQDRLIEVNGQNV 60 (90)
T ss_dssp TTSHHHHHTCCTTCEEEEETTEEC
T ss_pred CCChHHHCCCCCCCEEEEECCEEC
Confidence 34444333 899999999999877
No 56
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=57.40 E-value=36 Score=30.67 Aligned_cols=34 Identities=3% Similarity=0.009 Sum_probs=26.8
Q ss_pred Cc-chHHHHHHHHHHHHhcCCCeEEEEeeeeeccC
Q psy6043 99 DK-CGAAVVAGFMKAVAMLQPKVRVVGALAVVRNS 132 (282)
Q Consensus 99 DM-~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~ 132 (282)
|| +|.|+.+.+++++.+.+++.+|..+.-..|=.
T Consensus 105 D~k~g~a~~l~a~~~l~~~~~~~~v~~~~~~~EE~ 139 (356)
T 3ct9_A 105 DAGASVVSLLQVFLQLCRTSQNYNLIYLASCEEEV 139 (356)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCSSEEEEEEECCGGG
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCEEEEEEeCccc
Confidence 55 58899999999999887778888777777643
No 57
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=56.55 E-value=2.2 Score=31.36 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=19.5
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
-+.+|.|...+ ++|||+|.+.||+.|
T Consensus 38 ~V~~~spA~~aG~l~~GD~I~~ing~~v 65 (97)
T 2jil_A 38 SVRPGGPADREGTIKPGDRLLSVDGIRL 65 (97)
T ss_dssp EECTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHCCCCCCCCEEEEECCEEC
Confidence 33455555544 899999999999877
No 58
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.20 E-value=1.7 Score=31.69 Aligned_cols=25 Identities=8% Similarity=0.234 Sum_probs=19.2
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 38 ~~~spA~~aGgl~~GD~I~~vng~~v~ 64 (93)
T 2dkr_A 38 IPGGVADRHGGLKRGDQLLSVNGVSVE 64 (93)
T ss_dssp CTTSHHHHHCCCCTTCBEEEETTEECT
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 345555544 8999999999999874
No 59
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=56.13 E-value=2.2 Score=32.34 Aligned_cols=30 Identities=3% Similarity=0.071 Sum_probs=21.3
Q ss_pred eEEEEeeeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 120 VRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+-|..+ .+|.|...+ +++||+|.+.||+.|
T Consensus 48 ~~V~~V---~~~spA~~aGL~~GD~I~~ing~~v 78 (110)
T 1x5q_A 48 IFISRV---SEEGPAARAGVRVGDKLLEVNGVAL 78 (110)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCEEEEETTEEC
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEEC
Confidence 444443 345554444 899999999999877
No 60
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=55.94 E-value=6.1 Score=29.52 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=19.4
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 42 ~~~spA~~aG~L~~GD~Il~ing~~v~ 68 (103)
T 1uep_A 42 IAMGSADRDGRLHPGDELVYVDGIPVA 68 (103)
T ss_dssp CTTSTTGGGTCCCTTCEEEEETTEECT
T ss_pred CCCChHHhCCCCCCCCEEEEECCEECC
Confidence 356665544 8999999999999873
No 61
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=55.88 E-value=2.1 Score=31.85 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=22.0
Q ss_pred CeEEEEeeeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 36 g~~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 68 (101)
T 1uez_A 36 GIYVSLV---EPGSLAEKEGLRVGDQILRVNDKSLA 68 (101)
T ss_dssp CEEEEEE---CTTSHHHHHTCCSSCCEEEETTEECS
T ss_pred CEEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3444443 345554444 9999999999999873
No 62
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=55.86 E-value=2 Score=31.42 Aligned_cols=24 Identities=8% Similarity=0.270 Sum_probs=18.0
Q ss_pred ccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v~ 60 (91)
T 2vsp_A 36 KGGPADLAGLEDEDVIIEVNGVNVL 60 (91)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEECT
T ss_pred CCChHHHcCCCCCCEEEEECCEECC
Confidence 34443333 8999999999999884
No 63
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=55.55 E-value=3.7 Score=30.44 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=19.4
Q ss_pred eeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ ++|||+|.+-||+.|.
T Consensus 38 V~~~spA~~aG~L~~GD~I~~Ing~~v~ 65 (96)
T 2qkv_A 38 LIQGQYPEIDSKLQRGDIITKFNGDALE 65 (96)
T ss_dssp ECTTSCHHHHHHCCTTCEEEEETTEECT
T ss_pred eCCCChHHhcCCCCCCCEEEEECCEECC
Confidence 3445555444 8999999999999873
No 64
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=55.24 E-value=7.3 Score=29.72 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=23.5
Q ss_pred CeEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
++-|.. +.+|.|...+ +++||+|...||+.|+
T Consensus 51 gv~V~~---V~~~spA~~aG~L~~GD~Il~vng~~v~ 84 (117)
T 2ehr_A 51 GIFIKQ---VLEDSPAGKTNALKTGDKILEVSGVDLQ 84 (117)
T ss_dssp SEEEEE---ECSSSTTTSSCSCCTTCEEEEESSCBCT
T ss_pred CEEEEE---eCCCChHHHcCCCCCCCEEEEECCEECC
Confidence 454444 4457777765 8999999999998873
No 65
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=55.00 E-value=2.3 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=18.4
Q ss_pred eccCCCCCC--CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ ++|||+|.+.||+.|
T Consensus 47 ~~~spA~~aG~l~~GD~I~~ing~~v 72 (103)
T 2fcf_A 47 LEDSPAGKNGTLKPGDRIVEVDGMDL 72 (103)
T ss_dssp CSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred CCCCcHHHcCCCCCCCEEEEECCEEC
Confidence 345554443 899999999999987
No 66
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.99 E-value=2.2 Score=31.98 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=20.7
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
-+.+|.|...+ ++|||+|.+.||+.|
T Consensus 41 ~V~~~spA~~agGL~~GD~I~~ing~~v 68 (100)
T 2edp_A 41 KIEDGGKAALSQKMRTGDELVNINGTPL 68 (100)
T ss_dssp CCCTTSHHHHHTSCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEEc
Confidence 34566666665 899999999999987
No 67
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=54.15 E-value=3 Score=30.61 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=18.6
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ ++|||+|.+.||+.|+
T Consensus 37 ~~~spA~~aG~L~~GD~I~~vng~~v~ 63 (95)
T 2vwr_A 37 LEGGLAAQDGRLSSNDRVLAINGHDLK 63 (95)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCCChHHHCCCCCCCCEEEEECCEECC
Confidence 345554433 8999999999998874
No 68
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=53.89 E-value=6.5 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.6
Q ss_pred eeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
-..+|.|....+++||+|++.||+.|.
T Consensus 63 ~V~~~spA~aGL~~GD~I~~inG~~v~ 89 (134)
T 2l97_A 63 SVQSNMPANGHLEKYDVITKVDDKEIA 89 (134)
T ss_dssp ECSTTSGGGTTSCSSCEEEEETTEECC
T ss_pred EECCCCchHHCCCCCCEEEEECCEEcC
Confidence 345677766459999999999999883
No 69
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=53.31 E-value=23 Score=32.38 Aligned_cols=114 Identities=10% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEE-EecCCCC-CCCCceEeeccceEEcc
Q psy6043 5 KVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFL-EYEPTSS-SPTSSLFLVGKGVTYDT 82 (282)
Q Consensus 5 ~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l-~Y~~~~~-~~~~~iaLVGKGiTFDs 82 (282)
..++++++.+++++ +++++.........+.+.+++.=+|+.. ....|.++.. .|.--+. ..-+|+ ..+-|..|=.
T Consensus 45 ~~~~~l~~~l~~~G-~~v~~~~~~~~~~~~~~nvia~~~g~~~-~~~~~~i~l~aH~D~vp~g~~~~p~-~~~~g~~~g~ 121 (396)
T 3rza_A 45 TIQPILKEKFIALG-LDVKEDEAAKHPKLGANNLVCTMNSTIE-EGEVPKLYLTSHMDTVVPAINVKPI-VKDDGYIYSD 121 (396)
T ss_dssp THHHHHHHHHHHTT-CEEEECSGGGSTTCSSCCEEEEECCCCC----CCCEEEEEECCBCSSCSSCCCE-ECTTSEEECC
T ss_pred HHHHHHHHHHHHCC-CEEEEeccccccCCCCceEEEEECCcCC-CCCCCeEEEEEECCccCCCCCcceE-EecCCEEECC
Confidence 46788888899998 8877643211112234556665445300 0022444433 3331110 111121 1111222221
Q ss_pred CCCCCCCCCCcccCccCc-chHHHHHHHHHHHHhcCCC-eEEEEeeeeec
Q psy6043 83 GGADIKISGNMAGMARDK-CGAAVVAGFMKAVAMLQPK-VRVVGALAVVR 130 (282)
Q Consensus 83 GG~slKp~~~M~~Mk~DM-~GAAaV~ga~~a~a~l~~~-vnV~~il~~~E 130 (282)
| . ..|-.|| +|.|+.+++++++.+.+.+ -+|..++-..|
T Consensus 122 G-------~--~~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~E 162 (396)
T 3rza_A 122 G-------T--TILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGE 162 (396)
T ss_dssp S-------S--SCCCHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEESCG
T ss_pred C-------c--cccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 1 1 0122477 8999999999999876643 56665555555
No 70
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=52.99 E-value=3.2 Score=30.05 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=17.9
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ ++|||+|.+.||+.|+
T Consensus 36 ~~spA~~aG~L~~GD~I~~ing~~v~ 61 (90)
T 2q9v_A 36 PLGAADTDGRLRSGDELISVDGTPVI 61 (90)
T ss_dssp TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCChHHHCCCCCCCCEEEEECCEECC
Confidence 44444332 8999999999999873
No 71
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=51.99 E-value=3.3 Score=31.68 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=19.6
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+.+|.|...+ ++|||+|.+-||+.|+
T Consensus 31 ~V~~gspA~~aG~L~~GD~Il~Ing~~v~ 59 (106)
T 2la8_A 31 DLIQGQYPEIDSKLQRGDIITKFNGDALE 59 (106)
T ss_dssp ECCTTSCHHHHTTCCTTCEEEEESSCBCS
T ss_pred EECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 33445554443 8999999999999874
No 72
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=51.86 E-value=2.8 Score=31.02 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=19.0
Q ss_pred eccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 42 ~~~spA~~aGl~~GD~I~~ing~~v~ 67 (99)
T 3khf_A 42 EDGSPAQEAGLRAGDLITHINGESVL 67 (99)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 345554444 9999999999999874
No 73
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=51.53 E-value=3 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=17.4
Q ss_pred ccCCCCCC-CCCCceEEccCCeEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+|.|...+ +++||+|.+.||+.|
T Consensus 38 ~~spA~~aGl~~GD~I~~ing~~v 61 (95)
T 3r68_A 38 PGSPAEAAGLKNNDLVVAVNGKSV 61 (95)
T ss_dssp TTSHHHHHTCCTTEEEEEETTEEC
T ss_pred CCCHHHHCCCCCCCEEEEECCEEC
Confidence 34443333 899999999999987
No 74
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=51.52 E-value=3.4 Score=33.18 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=21.4
Q ss_pred eEEEEeeeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 120 VRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
+-|..+ .+|.|...+ +++||+|.+.||+.|
T Consensus 66 v~V~~V---~~~spA~~aGL~~GD~I~~vng~~v 96 (139)
T 2vz5_A 66 IYVTRV---SEGGPAEIAGLQIGDKIMQVNGWDM 96 (139)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCEEEEETTEEC
T ss_pred EEEEEE---CCCCHHHHCCCCCCCEEEEECCEEc
Confidence 444443 345555444 899999999999887
No 75
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=51.40 E-value=3 Score=30.97 Aligned_cols=25 Identities=4% Similarity=0.078 Sum_probs=18.6
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 42 ~~~spA~~aG~L~~GD~I~~vng~~v~ 68 (102)
T 2i1n_A 42 IPGGAAAMDGRLGVNDCVLRVNEVDVS 68 (102)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 345544433 8999999999998873
No 76
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=51.16 E-value=3.5 Score=30.29 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=18.1
Q ss_pred eccCCCCCC--CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 38 ~~~spA~~aG~l~~GD~I~~vng~~v 63 (98)
T 2opg_A 38 YEEGAACKDGRLWAGDQILEVNGIDL 63 (98)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred CCCChHHhCCCCCCCCEEEEECCEEC
Confidence 345544433 899999999999887
No 77
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=51.14 E-value=10 Score=34.19 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.1
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.-..+|.|...+ +++||+|++.||+.|.
T Consensus 247 ~~v~~~spA~~aGl~~GD~I~~ing~~v~ 275 (324)
T 1y8t_A 247 VEVVAGGAAANAGVPKGVVVTKVDDRPIN 275 (324)
T ss_dssp EEECTTSTTTTTTCCTTCEEEEETTEECC
T ss_pred EEECCCChHHHcCCCCCCEEEEECCEECC
Confidence 345578887777 9999999999999874
No 78
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=51.03 E-value=2.9 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=17.9
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ ++|||+|.+-||+.|+
T Consensus 34 ~~spA~~aG~l~~GD~I~~vng~~v~ 59 (85)
T 2i04_A 34 LDGPAALDGKMETGDVIVSVNDTCVL 59 (85)
T ss_dssp TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 44444332 8999999999999873
No 79
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=51.02 E-value=9.4 Score=34.41 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.1
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.-..+|.|...+ +++||+|++.||+.|.
T Consensus 249 ~~V~~~spA~~aGL~~GD~I~~ing~~v~ 277 (318)
T 1te0_A 249 NEVSPDGPAANAGIQVNDLIISVDNKPAI 277 (318)
T ss_dssp EEECTTSTTTTTCCCTTCCEEEETTEECC
T ss_pred EEeCCCChHHHCCCCCCCEEEEECCEEcC
Confidence 345678887777 9999999999999873
No 80
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=51.02 E-value=9.9 Score=31.20 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=21.1
Q ss_pred eeccCCCCCCCCCCceEEccCCeEE
Q psy6043 128 VVRNSCGENSYVSDEVVVSRAGKRI 152 (282)
Q Consensus 128 ~~EN~i~~~a~~pgDVi~s~~GkTV 152 (282)
+.+|.|-...+++||+|.+.||+.|
T Consensus 31 v~~~spA~~gl~~GD~I~~vng~~v 55 (195)
T 2qbw_A 31 VQPEGPASKLLQPGDKIIQANGYSF 55 (195)
T ss_dssp ECTTSTTTTTCCTTCEEEEETTEEC
T ss_pred ECCCChHHhCCCCCCEEEEECCEEC
Confidence 3567777778999999999999977
No 81
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=50.91 E-value=2.9 Score=30.43 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+.||+.|+
T Consensus 52 l~~GD~I~~vng~~v~ 67 (94)
T 2fe5_A 52 LQIGDRLLAVNNTNLQ 67 (94)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998873
No 82
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=50.70 E-value=2.3 Score=30.93 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+.||+.|+
T Consensus 48 L~~GD~I~~vng~~v~ 63 (92)
T 2qg1_A 48 LMQGDQILMVNGEDVR 63 (92)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999873
No 83
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=50.50 E-value=3.3 Score=30.99 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.1
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 34 ~~~spA~~aGl~~GD~I~~ing~~v 58 (106)
T 3ngh_A 34 EEGSPAEKAGLLDGDRVLRINGVFV 58 (106)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEEC
T ss_pred CCCCHHHHcCCCCCCEEEEECCEEC
Confidence 344444333 899999999999987
No 84
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.12 E-value=5.7 Score=29.45 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=22.0
Q ss_pred eeeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
.-+.+|.|....+++||+|.+.||+.|+
T Consensus 36 ~~V~~~spA~agL~~GD~Il~ing~~v~ 63 (96)
T 2edv_A 36 VAVTAGGSAHGKLFPGDQILQMNNEPAE 63 (96)
T ss_dssp CCBCSSSSSTTTSCTTCBEEEESSCBST
T ss_pred EEECCCCchhhCCCCCCEEEEECCEECC
Confidence 3455677775569999999999999873
No 85
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=49.70 E-value=5.3 Score=27.84 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 40 l~~GD~I~~ing~~v~ 55 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTE 55 (81)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999884
No 86
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.40 E-value=9.4 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=22.6
Q ss_pred eEEEEeeeeeccCCCCCCCCCCceEEccCCeEEE
Q psy6043 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVE 153 (282)
+.|..+.+- +....++|||+|.+-||+.|+
T Consensus 34 v~V~~v~~~----a~~aGL~~GD~I~~vng~~v~ 63 (96)
T 1ujv_A 34 QRVKQILDI----QGCPGLCEGDLIVEINQQNVQ 63 (96)
T ss_dssp EEEEEESCG----GGSTTCCSSCEEEEETTEECS
T ss_pred EEEEEEecc----cccCCCCCCCEEEEECCEECC
Confidence 566666662 334569999999999999874
No 87
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=49.28 E-value=4 Score=30.81 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=21.7
Q ss_pred CeEEEEeeeeeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 119 KVRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
++-|..+. +|.|...+ +++||+|.+-||+.|
T Consensus 40 g~~V~~V~---~~spA~~aG~l~~GD~I~~ing~~v 72 (111)
T 2koj_A 40 PIYVKNIL---PRGAAIQDGRLKAGDRLIEVNGVDL 72 (111)
T ss_dssp CEEEEEEC---SSSHHHHHCSSCTTCEEEEETTEEC
T ss_pred CEEEEEEC---CCChHHHCCCCCCCCEEEEECCEEC
Confidence 34444433 45555444 899999999999987
No 88
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=49.26 E-value=3 Score=32.41 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=22.7
Q ss_pred CeEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
++-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 46 ~~~V~~V---~~~spA~~aG~L~~GD~I~~ing~~v~ 79 (122)
T 1v5q_A 46 PPLISYI---EADSPAERCGVLQIGDRVMAINGIPTE 79 (122)
T ss_dssp CCEEEEE---CTTSHHHHSCCCCTTCCEEEETTEESS
T ss_pred CcEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 4444443 456665555 8999999999998773
No 89
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=49.25 E-value=6.1 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.0
Q ss_pred eccCCCCC-CCCCCceEEccCCeEEE
Q psy6043 129 VRNSCGEN-SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~-a~~pgDVi~s~~GkTVE 153 (282)
.+|.|... .+++||+|.+.||+.|.
T Consensus 12 ~~~spA~~aGl~~GD~I~~ing~~v~ 37 (91)
T 2zpm_A 12 QPNSAASXAGLQAGDRIVXVDGQPLT 37 (91)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECC
T ss_pred CCCChHHhcCCCCCCEEEEECCeEcC
Confidence 35555443 49999999999999874
No 90
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=48.99 E-value=2.5 Score=33.33 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=22.3
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEEecC
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIRVTN 156 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVEI~N 156 (282)
..+|+|...| .+|||+|.+-||+.|++.+
T Consensus 46 V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s 75 (101)
T 3qik_A 46 VQRGSLAEVAGLQVGRKIYSINEDLVFLRP 75 (101)
T ss_dssp ECTTSHHHHHTCCTTCBEEEETTEESTTSC
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEEcCcCC
Confidence 3456665554 8999999999999996555
No 91
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.36 E-value=3.5 Score=30.84 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 47 L~~GD~I~~ing~~v~ 62 (103)
T 1wf7_A 47 VRIGDVVLSIDGISAQ 62 (103)
T ss_dssp CCTTCBEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999883
No 92
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=47.92 E-value=5.7 Score=28.24 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=14.2
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 43 l~~GD~I~~vng~~v 57 (85)
T 1rgw_A 43 LSQGDLVVAIDGVNT 57 (85)
T ss_dssp CCCCSBEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999887
No 93
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=47.90 E-value=4.3 Score=30.17 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=18.6
Q ss_pred eccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 53 ~~~spA~~aGl~~GD~I~~ing~~v~ 78 (104)
T 3sfj_A 53 SEGGPAEIAGLQIGDKIMQVNGWDMT 78 (104)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CCCChHHHcCCCCCCEEEEECCEECC
Confidence 445544333 8999999999999873
No 94
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.80 E-value=5 Score=31.41 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=18.6
Q ss_pred cCCCCCC-CCCCceEEccCCeEE
Q psy6043 131 NSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 131 N~i~~~a-~~pgDVi~s~~GkTV 152 (282)
|.|...+ +++||+|.+.||+.|
T Consensus 56 ~spA~~aGL~~GD~Il~Vng~~v 78 (118)
T 2yub_A 56 ISPNNRNAIHPGDRILEINGTPV 78 (118)
T ss_dssp SCTTHHHHCCTTCCEEEESSSBT
T ss_pred CChHHHcCCCCCCEEEEECCEEC
Confidence 6666665 999999999999877
No 95
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=47.75 E-value=4.3 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=18.5
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 41 ~~~spA~~aGl~~GD~I~~ing~~v 65 (128)
T 2kjd_A 41 DPDSPAEASGLRAQDRIVEVNGVCM 65 (128)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEEC
T ss_pred CCCChHHHcCCCCCCEEEEECCEEC
Confidence 345554444 999999999999887
No 96
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.16 E-value=4.7 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=18.4
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 51 ~~spA~~aG~L~~GD~I~~vng~~v~ 76 (108)
T 1q7x_A 51 PQGAAESDGRIHKGDRVLAVNGVSLE 76 (108)
T ss_dssp TTSTHHHHTCCCSSCEEEEETTEECB
T ss_pred CCChHHHCCCCCCCCEEEEECCEECC
Confidence 45444333 8999999999999885
No 97
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=47.07 E-value=3.5 Score=31.51 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=20.1
Q ss_pred eeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.-+.+|.|...+ +++||+|.+.||+.|+
T Consensus 54 ~~V~~~spA~~aG~l~~GD~Il~ing~~v~ 83 (117)
T 2o2t_A 54 QEIQEGSVAHRDGRLKETDQILAINGQALD 83 (117)
T ss_dssp CCCCTTSHHHHHCCCCTTCEEEEETTEECC
T ss_pred EEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 334455554433 8999999999999884
No 98
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=46.13 E-value=2.9 Score=31.41 Aligned_cols=16 Identities=0% Similarity=0.142 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+.||+.|+
T Consensus 63 l~~GD~I~~vng~~v~ 78 (108)
T 2jre_A 63 IEPNDKILRVDDVNVQ 78 (108)
T ss_dssp CCSSEEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999873
No 99
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=45.99 E-value=3.9 Score=32.12 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=21.1
Q ss_pred eEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 120 VRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 120 vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 61 v~V~~V~---~~spA~~aG~L~~GD~Il~Vng~~v~ 93 (123)
T 2iwq_A 61 IFIKHVL---EDSPAGKNGTLKPGDRIVEVDGMDLR 93 (123)
T ss_dssp EEEEEEC---SSSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCChHHHcCCCCCCCEEEEECCEECC
Confidence 5554443 44444332 8999999999998873
No 100
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=45.88 E-value=6.6 Score=28.38 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=14.2
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 50 l~~GD~I~~vng~~v 64 (91)
T 1m5z_A 50 LKPYDRLLQVNHVRT 64 (91)
T ss_dssp CCTTCEEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999977
No 101
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=45.80 E-value=3.9 Score=31.77 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=18.1
Q ss_pred ccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+|.|...| +++||+|.+-||+.|+
T Consensus 53 ~gspA~~AGL~~GD~Il~VnG~~v~ 77 (109)
T 2vsv_A 53 PYCSASVAGAREGDYIVSIQLVDCK 77 (109)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEECT
T ss_pred CCCHHHHcCCCCCCEEEEECCEECC
Confidence 44443333 8999999999999885
No 102
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=45.37 E-value=3.5 Score=30.89 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=19.0
Q ss_pred eccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 56 ~~~spA~~aGl~~GD~I~~vng~~v~ 81 (104)
T 2z17_A 56 QEDSPAHCAGLQAGDVLANINGVSTE 81 (104)
T ss_dssp CTTSHHHHHTCCTTCBCCEETTEECT
T ss_pred CCCChHHHcCCCCCCEEEEECCEEcC
Confidence 445554444 9999999999998873
No 103
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=45.35 E-value=4.9 Score=30.08 Aligned_cols=16 Identities=0% Similarity=0.042 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 52 L~~GD~I~~vng~~v~ 67 (105)
T 2awx_A 52 LQIGDKLLAVNSVSLE 67 (105)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998873
No 104
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=45.30 E-value=4.2 Score=30.49 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=19.2
Q ss_pred eeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ +++||+|.+-||+.|+
T Consensus 45 V~~~spA~~aG~L~~GD~I~~ing~~v~ 72 (106)
T 3axa_A 45 VVKGGAADVDGRLAAGDQLLSVDGRSLV 72 (106)
T ss_dssp EBTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred ECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 3345444433 8999999999999885
No 105
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.21 E-value=6 Score=28.99 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=17.4
Q ss_pred ccCCCCC-CCCCCceEEccCCeEE
Q psy6043 130 RNSCGEN-SYVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~-a~~pgDVi~s~~GkTV 152 (282)
+|.|... .+++||+|.+.||+.|
T Consensus 41 ~~spA~~aGl~~GD~I~~ing~~v 64 (94)
T 2eeg_A 41 AGSKAALAALCPGDLIQAINGEST 64 (94)
T ss_dssp SSSHHHHTTCCTTCEEEEETTEET
T ss_pred CCCHHHHcCCCCCCEEEEECCEEC
Confidence 4444332 3899999999999887
No 106
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=45.14 E-value=3.9 Score=31.10 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=18.5
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+-||+.|+
T Consensus 44 ~~gspA~~aG~L~~GD~Il~ING~~v~ 70 (97)
T 2ejy_A 44 LHGGMIHRQGSLHVGDEILEINGTNVT 70 (97)
T ss_dssp CSSSHHHHHTCCCTTCEEEEETTBCCC
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 345444443 7999999999999874
No 107
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=45.03 E-value=3.6 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=21.4
Q ss_pred CeEEEEeeeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 119 KVRVVGALAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
++-|..+ .+|.|...+ +++||+|.+.||+.|
T Consensus 47 gv~V~~V---~~~spA~~aGL~~GD~I~~vng~~v 78 (128)
T 1uf1_A 47 GIYITGV---DPGSEAEGSGLKVGDQILEVNGRSF 78 (128)
T ss_dssp CCEEEEE---CTTCHHHHHTCCTTCEEEEETTEEC
T ss_pred CEEEEEE---CCCCHHHHCCCCCCCEEEEECCEEC
Confidence 4555444 345544444 899999999999877
No 108
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=44.89 E-value=4.2 Score=31.65 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=22.0
Q ss_pred CeEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
++-|..+ .+|.|...+ ++|||+|.+-||+.|+
T Consensus 59 gv~V~~V---~~gspA~~aG~L~~GD~Il~Ing~~v~ 92 (121)
T 2kom_A 59 PIYVKNI---LPRGAAIQDGRLKAGDRLIEVNGVDLV 92 (121)
T ss_dssp CEEEEEE---CTTSHHHHHTCCCSSSEEEEETTEECT
T ss_pred CEEEEEE---CCCChHHHcCCCCCCCEEEEECCEEcC
Confidence 3444443 345555444 8999999999999873
No 109
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=44.71 E-value=4.5 Score=29.97 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=17.8
Q ss_pred ccCCCCC-C-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGEN-S-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~-a-~~pgDVi~s~~GkTVE 153 (282)
+|.|... . +++||+|.+-||+.|+
T Consensus 46 ~~spA~~aG~L~~GD~I~~vng~~v~ 71 (101)
T 2jik_A 46 ENGAAALDGRLQEGDKILSVNGQDLK 71 (101)
T ss_dssp TTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 4444433 2 8999999999998874
No 110
>1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A
Probab=44.70 E-value=5.4 Score=31.76 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.8
Q ss_pred CCCCCC
Q psy6043 85 ADIKIS 90 (282)
Q Consensus 85 ~slKp~ 90 (282)
+++|-+
T Consensus 55 i~VKLG 60 (103)
T 1v1h_A 55 MITKLG 60 (103)
T ss_dssp EEECBC
T ss_pred EEEeec
Confidence 444444
No 111
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=44.60 E-value=1e+02 Score=27.24 Aligned_cols=34 Identities=9% Similarity=-0.057 Sum_probs=23.0
Q ss_pred Cc-chHHHHHHHHHHHHhc--CCCeEEEEeeeeeccC
Q psy6043 99 DK-CGAAVVAGFMKAVAML--QPKVRVVGALAVVRNS 132 (282)
Q Consensus 99 DM-~GAAaV~ga~~a~a~l--~~~vnV~~il~~~EN~ 132 (282)
|| +|.++.+.+++++.+. .++.+|..++-..|-.
T Consensus 100 D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 136 (377)
T 3isz_A 100 DMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEA 136 (377)
T ss_dssp TTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSS
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccc
Confidence 66 5678888888877654 3457777666666653
No 112
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}
Probab=44.49 E-value=47 Score=30.77 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=24.2
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
.|| +|.|+.+.+++++.+.+ ++.+|.-++-..|=
T Consensus 165 ~D~K~gva~~l~a~~~L~~~~~~~~~~i~~if~~~EE 201 (434)
T 3ife_A 165 ADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEE 201 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGG
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECCcc
Confidence 454 78899999999998864 45666656555553
No 113
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=44.35 E-value=4.3 Score=31.52 Aligned_cols=25 Identities=4% Similarity=0.252 Sum_probs=18.2
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+-||+.|+
T Consensus 61 ~~~spA~~aG~L~~GD~Il~Vng~~v~ 87 (117)
T 2fne_A 61 FAKGAASEDGRLKRGDQIIAVNGQSLE 87 (117)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 344444332 8999999999998873
No 114
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=44.23 E-value=5 Score=29.32 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=18.0
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+-||+.|+
T Consensus 42 ~~spA~~aG~l~~GD~I~~vng~~v~ 67 (96)
T 1d5g_A 42 PQGAAESDGRIHKGDRVLAVNGVSLE 67 (96)
T ss_dssp TTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 44444333 8999999999998874
No 115
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.12 E-value=4.9 Score=30.20 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=19.0
Q ss_pred eeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ +++||+|.+.||+.|+
T Consensus 47 V~~~spA~~aG~L~~GD~I~~vng~~v~ 74 (107)
T 1wf8_A 47 VTEGGAAQRDGRIQVNDQIVEVDGISLV 74 (107)
T ss_dssp ECTTCHHHHHCSSCTTCBEEEETTEECB
T ss_pred eCCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 3344444333 8999999999999884
No 116
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=43.98 E-value=7.3 Score=28.34 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=14.5
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 42 l~~GD~I~~vng~~v~ 57 (91)
T 2f5y_A 42 LQQLDTVLQLNERPVE 57 (91)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998873
No 117
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=43.97 E-value=43 Score=30.89 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 101 CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 101 ~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
+|.|+.+++++++.+.+ ++.+|..++-..|=
T Consensus 120 ~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 152 (418)
T 1xmb_A 120 GHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE 152 (418)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEEEecccc
Confidence 79999999999998865 56777777666664
No 118
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=43.87 E-value=76 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCc-chHHHHHHHHHHHHhcCCCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQPKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN 131 (282)
.|| +|.|+++.+++.+.+.+++.+|+.++-.-|=
T Consensus 183 ~D~k~g~a~~l~a~~~l~~~~~~~~v~~~~~~~EE 217 (373)
T 1vhe_A 183 WDNRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEE 217 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSEEEEEEESCCT
T ss_pred CccHHHHHHHHHHHHHHhhcCCCceEEEEEECCcc
Confidence 454 5677888888888887777777765555443
No 119
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.87 E-value=6 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=21.4
Q ss_pred CeEEEEeeeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 119 KVRVVGALAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
++-|..+. +|.|...+ +++||+|.+.||+.|+
T Consensus 48 gv~V~~V~---~~spA~~aG~L~~GD~Il~vng~~v~ 81 (120)
T 2eno_A 48 GIYVSRIK---ENGAAALDGRLQEGDKILSVNGQDLK 81 (120)
T ss_dssp SEEEEEEC---SSSHHHHSCCSCTTCEEEEETTEECC
T ss_pred CEEEEEEC---CCChHHHCCCCCCCCEEEEECCEECC
Confidence 34444433 45444333 8999999999998874
No 120
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=43.82 E-value=77 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.8
Q ss_pred cCc-chHHHHHHHHHHHHhcC-CCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ-PKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~-~~vnV~~il~~~EN 131 (282)
.|| +|.|+.+.+++++.+.+ ++.+|..+.-..|=
T Consensus 139 ~D~K~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~EE 174 (417)
T 1fno_A 139 ADDKAGVAEIMTALAVLKGNPIPHGDIKVAFTPDEE 174 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCCCEEEEEESCGG
T ss_pred cccHHhHHHHHHHHHHHHhCCCCCCcEEEEEEeccc
Confidence 666 78899999999999876 44677666666664
No 121
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=43.70 E-value=6.5 Score=29.97 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.1
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 58 ~~spA~~aG~L~~GD~Il~Vng~~v~ 83 (112)
T 2r4h_A 58 EDGPAERSGKMRIGDEILEINGETTK 83 (112)
T ss_dssp TTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 45444433 8999999999998874
No 122
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.76 E-value=5.4 Score=29.96 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=19.0
Q ss_pred eccCCCCCC--CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 49 ~~~spA~~aggL~~GD~Il~vng~~v 74 (107)
T 1uhp_A 49 VDSGPAAKEGGLQIHDRIIEVNGRDL 74 (107)
T ss_dssp CSSSHHHHTTCCCSSCEEEEETTEEC
T ss_pred CCCChHHHcCCCCCCCEEEEECCEEC
Confidence 355555544 999999999999988
No 123
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=42.10 E-value=5.8 Score=29.87 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=14.3
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 63 l~~GD~I~~vng~~v 77 (109)
T 1q3o_A 63 LRMGDFLIEVNGQNV 77 (109)
T ss_dssp CCTTCEEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999987
No 124
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=41.89 E-value=6 Score=29.56 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=20.2
Q ss_pred eeeccCCCCCC---CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS---YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a---~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|...+ +++||+|.+.||+.|+
T Consensus 49 ~V~~~spA~~aG~rL~~GD~Il~ing~~v~ 78 (107)
T 3nfk_A 49 RVAPGTPADLCVPRLNEGDQVVLINGRDIA 78 (107)
T ss_dssp EECTTSHHHHSSSCCCTTCEEEEETTEECT
T ss_pred EECCCCchHHcCCccCCCCEEEEECCEECC
Confidence 34456665554 9999999999998763
No 125
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=41.84 E-value=4.7 Score=31.29 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=18.7
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.+...+ +++||+|.+.||+.|+
T Consensus 52 ~~~spA~~aG~L~~GD~Il~Vng~~v~ 78 (123)
T 1ueq_A 52 IPDGPAAQDGKMETGDVIVYINEVCVL 78 (123)
T ss_dssp CTTSHHHHTSCCCTTCEEEEETTEECT
T ss_pred CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 345554443 8999999999998873
No 126
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=41.69 E-value=81 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=24.0
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
.|| +|.|+.+++++++.+.+ ++.+|..++-..|=
T Consensus 143 ~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 179 (433)
T 3pfo_A 143 QDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEE 179 (433)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTEEESSCEEEEEESCTT
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCc
Confidence 565 78899999999998875 34556555555554
No 127
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=41.68 E-value=4.5 Score=30.55 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=18.7
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 46 ~~~spA~~aG~l~~GD~I~~vng~~v~ 72 (111)
T 2dlu_A 46 VPGGLADRDGRLQTGDHILKIGGTNVQ 72 (111)
T ss_dssp CTTSSHHHHTCCCSSCEEEEESSCCCT
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 345554443 8999999999998874
No 128
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=41.63 E-value=6 Score=31.06 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=17.8
Q ss_pred ccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 60 ~gspA~~aGL~~GD~Il~Vng~~v~ 84 (124)
T 3tsv_A 60 EDSPAAKEGLEEGDQILRVNNVDFT 84 (124)
T ss_dssp TTCHHHHTTCCTTEEEEEETTEECS
T ss_pred CCCHHHHcCCCCCCEEEEECCEECC
Confidence 45444322 8999999999999873
No 129
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=41.59 E-value=5.8 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.1
Q ss_pred eccCCCCCC--CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 43 ~~~spA~~aG~l~~GD~I~~vng~~v 68 (104)
T 3i4w_A 43 LAGGPADLSGELRKGDQILSVNGVDL 68 (104)
T ss_dssp CTTSHHHHHCCCCTTEEEEEETTEEC
T ss_pred CCCChHHhcCCCCCCCEEEEECCEEC
Confidence 345444433 899999999999987
No 130
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=41.56 E-value=5.6 Score=29.08 Aligned_cols=28 Identities=4% Similarity=0.042 Sum_probs=21.5
Q ss_pred eeeeccCCCCC-C-CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGEN-S-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~-a-~~pgDVi~s~~GkTVE 153 (282)
-.+.+|.|... + +++||+|.+-||+.|+
T Consensus 30 ~~V~~gspA~~~agL~~GD~I~~Ing~~v~ 59 (88)
T 1kwa_A 30 ARIMHGGMIHRQGTLHVGDEIREINGISVA 59 (88)
T ss_dssp EEECTTSHHHHHTCCCTTCEEEEETTEEGG
T ss_pred EEECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 34446666665 4 8999999999999884
No 131
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=41.25 E-value=4.8 Score=30.37 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 55 L~~GD~I~~vng~~v~ 70 (110)
T 1um1_A 55 LSLGDRILEVNGSSLL 70 (110)
T ss_dssp CCTTCEEEEESSCBCS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998874
No 132
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=40.91 E-value=6.4 Score=30.38 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 69 L~~GD~I~~Ing~~v~ 84 (114)
T 2gzv_A 69 VAAGDEITGVNGRSIK 84 (114)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999874
No 133
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.72 E-value=7.7 Score=28.46 Aligned_cols=26 Identities=4% Similarity=0.196 Sum_probs=20.3
Q ss_pred eeeccCCCCC-C-CCCCceEEccCCeEE
Q psy6043 127 AVVRNSCGEN-S-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 127 ~~~EN~i~~~-a-~~pgDVi~s~~GkTV 152 (282)
-+.+|.|... . +++||+|.+-||+.|
T Consensus 35 ~V~~~spA~~ag~L~~GD~I~~ing~~v 62 (91)
T 2e7k_A 35 RILHGGMVAQQGLLHVGDIIKEVNGQPV 62 (91)
T ss_dssp EECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 3445666665 3 899999999999988
No 134
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=40.45 E-value=4.7 Score=30.22 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=17.6
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 47 ~~spA~~aG~L~~GD~I~~vng~~v~ 72 (105)
T 1wha_A 47 EGGAAHRAGTLQVGDRVLSINGVDVT 72 (105)
T ss_dssp TTSSHHHHSSCCTTCEEEEESSCBCT
T ss_pred CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 44444333 8999999999998873
No 135
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=40.31 E-value=9.6 Score=28.05 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=17.7
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 45 ~~spA~~aG~l~~GD~I~~vng~~v~ 70 (103)
T 1wfv_A 45 EDGPAIRNGRMRVGDQIIEINGESTR 70 (103)
T ss_dssp TTSHHHHHCSSCTTCEEEEETTEECS
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 44444332 8999999999998874
No 136
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.29 E-value=8.6 Score=28.50 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=14.1
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 57 l~~GD~I~~vng~~v 71 (104)
T 2djt_A 57 LEVGDLVLHINGEST 71 (104)
T ss_dssp CCTTCBEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999877
No 137
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=40.15 E-value=5.2 Score=30.59 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=17.3
Q ss_pred ccCCCCCC--CCCCceEEccCCeEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
+|.|...+ +++||+|.+.||+.|
T Consensus 47 ~~spA~~aG~L~~GD~I~~vng~~v 71 (119)
T 1tp5_A 47 AGGPADLSGELRKGDQILSVNGVDL 71 (119)
T ss_dssp TTSHHHHHSCCCTTEEEEEETTEEC
T ss_pred CCCHHHHcCCCCCCCEEEEECCEEC
Confidence 34444333 899999999999887
No 138
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=39.75 E-value=5.9 Score=29.58 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=19.1
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ +++||+|.+.||+.|.
T Consensus 50 v~~~spA~~aGl~~GD~I~~ing~~v~ 76 (107)
T 3qe1_A 50 VLPGGAADRAGVRKGDRILEVNGVNVE 76 (107)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3445554443 8999999999999873
No 139
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=39.60 E-value=12 Score=28.38 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=22.8
Q ss_pred CeEEEEeeeeeccCCCCC--CCCCCceEEccCCeEE
Q psy6043 119 KVRVVGALAVVRNSCGEN--SYVSDEVVVSRAGKRI 152 (282)
Q Consensus 119 ~vnV~~il~~~EN~i~~~--a~~pgDVi~s~~GkTV 152 (282)
++-|..+ .+|.|... -+++||+|.+.||+.|
T Consensus 44 ~~~V~~V---~~~spA~~~agL~~GD~I~~ing~~v 76 (114)
T 1uew_A 44 PHKIGRI---IDGSPADRCAKLKVGDRILAVNGQSI 76 (114)
T ss_dssp SCEEEEE---CTTCTTGGGSSCCTTCBEEEETTBCT
T ss_pred CeEEEEE---CCCChHHHhCCCCCCCEEEEECCEEC
Confidence 4444443 45777766 5899999999999876
No 140
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=39.51 E-value=74 Score=29.03 Aligned_cols=88 Identities=5% Similarity=-0.022 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEEccCC
Q psy6043 5 KVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGG 84 (282)
Q Consensus 5 ~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTFDsGG 84 (282)
..++++.+.+++++ +++++ + .++.+++.=+|+. ...|.++...+-..- .. ||
T Consensus 36 ~~~~~l~~~l~~~g-~~~~~-d-------~~gnv~a~~~g~~---~~~~~i~l~aH~D~v-~~---------------~g 87 (408)
T 3n5f_A 36 RAKDLVASYMREAG-LFVYE-D-------AAGNLIGRKEGTN---PDATVVLVGSHLDSV-YN---------------GG 87 (408)
T ss_dssp HHHHHHHHHHHHHT-CEEEE-C-------TTCCEEEEECCSS---TTSCEEEEEEESCCC-TT---------------BC
T ss_pred HHHHHHHHHHHHCC-CEEEE-c-------CCCCEEEEecCCC---CCCCEEEEEecCCCC-CC---------------CC
Confidence 45677888888888 77765 1 1345555544532 013444444433221 00 12
Q ss_pred CCCCCCCCcccCccCcchHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 85 ADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 85 ~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
-..|| +|.|+.+++++.+.+.+ ++-+|.-+.-..|=
T Consensus 88 --------~~d~~---~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE 125 (408)
T 3n5f_A 88 --------CFDGP---LGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEE 125 (408)
T ss_dssp --------SSTTH---HHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSS
T ss_pred --------ccCCH---HHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcc
Confidence 11233 68899999999999875 55666655555554
No 141
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=38.99 E-value=3.5 Score=31.65 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 51 ~~spA~~aG~L~~GD~Il~ing~~v~ 76 (119)
T 1x6d_A 51 PNGLASQEGTIQKGNEVLSINGKSLK 76 (119)
T ss_dssp SSSHHHHHTSSCTTCBCCEETTEECS
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 45444443 8999999999999884
No 142
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.96 E-value=12 Score=27.67 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 49 L~~GD~Il~Ing~~v~ 64 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVV 64 (90)
T ss_dssp CCSSCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999884
No 143
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=38.47 E-value=12 Score=29.86 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=20.6
Q ss_pred eeeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
--+.+|.|-..+ +++||+|.+-||+.|.
T Consensus 54 ~~V~~gspA~~aG~L~~GD~Il~VnG~~v~ 83 (126)
T 1wif_A 54 SHLINKGAAASDGILQPGDVLISVGHANVL 83 (126)
T ss_dssp CCCCTTSSGGGCSSSCTTCBEEEESSSCCT
T ss_pred EEECCCCHHHHcCCCCCCCEEEEECCEEcC
Confidence 344566665544 8999999999998763
No 144
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=38.09 E-value=6.1 Score=29.88 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 54 l~~GD~I~~vng~~v~ 69 (113)
T 2g5m_B 54 IQVNDLLVEVDGTSLV 69 (113)
T ss_dssp SCTTCBEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999884
No 145
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=38.04 E-value=6.8 Score=30.01 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=19.2
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|-..| .++||+|.+-||+.|+
T Consensus 42 V~~~spA~~aGL~~GD~Il~vng~~v~ 68 (94)
T 3kzd_A 42 VKETGLASKKGLKAGDEILEINNRAAD 68 (94)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEEGG
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3445544333 8999999999999884
No 146
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=38.02 E-value=13 Score=26.84 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+.||+.|.
T Consensus 52 l~~GD~I~~vng~~v~ 67 (97)
T 2iwn_A 52 IQIGDQIIAVDGTNLQ 67 (97)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998873
No 147
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=37.66 E-value=4.7 Score=30.80 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=14.2
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 60 L~~GD~Il~vng~~v 74 (117)
T 1uit_A 60 LEYGDQLLEFNGINL 74 (117)
T ss_dssp CCTTCEECEETTEET
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999987
No 148
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=37.58 E-value=1.2e+02 Score=27.71 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHhc--CCCeEEEEeeeeecc
Q psy6043 100 KCGAAVVAGFMKAVAML--QPKVRVVGALAVVRN 131 (282)
Q Consensus 100 M~GAAaV~ga~~a~a~l--~~~vnV~~il~~~EN 131 (282)
.+|.|+.+++++++.+. +++.+|..++-..|=
T Consensus 125 kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 158 (404)
T 1ysj_A 125 DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEE 158 (404)
T ss_dssp HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTT
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEEEecccc
Confidence 48999999999999875 456677766655554
No 149
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=43.56 E-value=7 Score=30.14 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=21.4
Q ss_pred eeeccCCCCC--CCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGEN--SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~--a~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|... .+++||+|.+-||+.|+
T Consensus 59 ~V~~~spA~~~aGL~~GD~Il~ING~~v~ 87 (112)
T 2lob_A 59 EIHPGQPADRCGGLHVGDAILAVNGVNLR 87 (112)
Confidence 3446777766 48999999999999985
No 150
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=37.29 E-value=6.5 Score=30.62 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=18.8
Q ss_pred eccCCCCC--CCCCCceEEccCCeEEE
Q psy6043 129 VRNSCGEN--SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~--a~~pgDVi~s~~GkTVE 153 (282)
.+|.|... .+++||+|.+-||+.|+
T Consensus 61 ~~~spA~~aggL~~GD~Il~VnG~~v~ 87 (120)
T 2iwo_A 61 HPTGVAAQTQKLRVGDRIVTICGTSTE 87 (120)
T ss_dssp CTTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred CCCCHHHHhCCCCCCCEEEEECCEECC
Confidence 34555443 48999999999999874
No 151
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=37.29 E-value=14 Score=28.87 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=27.3
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEEEecCCCcccceehhhhhHHHH
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMA 173 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya~ 173 (282)
-+.+|.+...+ +++||+|.+-||+.|+ + +-..|++.+.+
T Consensus 63 ~V~~gs~A~~aggL~~GD~Il~Vng~~v~--~------~~~~~~~~~l~ 103 (130)
T 1i16_A 63 RIFKGAASEQSETVQPGDEILQLGGTAMQ--G------LTRFEAWNIIK 103 (130)
T ss_dssp EECSSCCCSSSCCCCTTCCEEECSSCBGG--G------SCHHHHHHHHH
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEECC--C------CCHHHHHHHHH
Confidence 34567777765 9999999999998763 2 23556665543
No 152
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=37.16 E-value=6.5 Score=30.40 Aligned_cols=16 Identities=0% Similarity=-0.008 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 73 L~~GD~Il~Vng~~v~ 88 (117)
T 2byg_A 73 LQVGDRLLMVNNYSLE 88 (117)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998874
No 153
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.12 E-value=6.1 Score=30.84 Aligned_cols=27 Identities=4% Similarity=0.105 Sum_probs=20.1
Q ss_pred eeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|...+ ++|||+|.+.||+.|+
T Consensus 50 ~V~~~spA~~aGL~~GD~Il~Ing~~v~ 77 (114)
T 2d8i_A 50 SVKETGLASKKGLKAGDEILEINNRAAD 77 (114)
T ss_dssp ECCTTSSHHHHTCCTTCCEEEESSCBGG
T ss_pred EeCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 34455554444 8999999999999874
No 154
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=36.95 E-value=1.1e+02 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=25.9
Q ss_pred Cc-chHHHHHHHHHHHHhc-CCCeEEEEeeeeeccC
Q psy6043 99 DK-CGAAVVAGFMKAVAML-QPKVRVVGALAVVRNS 132 (282)
Q Consensus 99 DM-~GAAaV~ga~~a~a~l-~~~vnV~~il~~~EN~ 132 (282)
|| +|.|+.+++++++.+. +++.+|..++-..|=.
T Consensus 103 D~K~~~a~~l~a~~~l~~~~~~~~~v~~~~~~~EE~ 138 (369)
T 3tx8_A 103 DMKSGLAVYLHTFATLATSTELKHDLTLIAYECEEV 138 (369)
T ss_dssp TTHHHHHHHHHHHHHHTSCTTCCSEEEEEEECCCSS
T ss_pred cchHHHHHHHHHHHHHHhhcCCCccEEEEEEecccc
Confidence 77 8899999999999764 4567887777666653
No 155
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=36.87 E-value=13 Score=27.13 Aligned_cols=24 Identities=4% Similarity=0.187 Sum_probs=17.7
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+|.|...+ +++||+|.+.||+.|+
T Consensus 39 ~~spA~~aG~l~~GD~I~~vng~~v~ 64 (97)
T 1n7e_A 39 KGGLAERTGAIHIGDRILAINSSSLK 64 (97)
T ss_dssp TTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 34444333 8999999999998873
No 156
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.54 E-value=14 Score=27.45 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=14.5
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 54 L~~GD~I~~vng~~v~ 69 (100)
T 1whd_A 54 LQQLDTVLQLNERPVE 69 (100)
T ss_dssp CCSSCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999873
No 157
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.31 E-value=12 Score=27.91 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=14.2
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 59 L~~GD~I~~ing~~v 73 (104)
T 1wi2_A 59 LQEGDQVLAVNDVDF 73 (104)
T ss_dssp CCTTCEEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999887
No 158
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=35.96 E-value=12 Score=28.79 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=14.9
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 54 L~~GD~Il~InG~~v~ 69 (111)
T 1vae_A 54 AKEGDYIVSIQGVDCK 69 (111)
T ss_dssp CCTTCEEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999885
No 159
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=35.85 E-value=12 Score=28.23 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 62 L~~GD~I~~vng~~v~ 77 (116)
T 2dm8_A 62 LWAGDQILEVNGVDLR 77 (116)
T ss_dssp CCTTCEEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998874
No 160
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=35.77 E-value=13 Score=26.47 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=20.3
Q ss_pred eeeccCCCCC--CCCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGEN--SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~--a~~pgDVi~s~~GkTVE 153 (282)
-+.+|.|... .+++||+|.+-||+.|+
T Consensus 34 ~V~~gspA~~~agl~~GD~I~~vng~~v~ 62 (87)
T 4e34_A 34 EIHPGQPADRCGGLHVGDAILAVNGVNLR 62 (87)
T ss_dssp EECTTSHHHHHSCCCTTEEEEEETTEECT
T ss_pred EECCCCHHHhcCCCCCCCEEEEECCEECC
Confidence 3445665553 58999999999998873
No 161
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.68 E-value=14 Score=27.50 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|+
T Consensus 50 l~~GD~I~~vng~~v~ 65 (106)
T 2eei_A 50 VLADDHLIEVNGENVE 65 (106)
T ss_dssp CCSSEEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999884
No 162
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=35.56 E-value=7.5 Score=29.72 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.0
Q ss_pred ccCCCCCCCCCCceEEccCCeEE
Q psy6043 130 RNSCGENSYVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a~~pgDVi~s~~GkTV 152 (282)
+|.|....++|||+|.+-||+.|
T Consensus 55 ~~spA~~gL~~GD~I~~Vng~~v 77 (117)
T 2csj_A 55 PGGPADGLLQENDRVVMVNGTPM 77 (117)
T ss_dssp TTSSHHHHBCTTCEEEEESSCBC
T ss_pred CCCcccccCCCCCEEEEECCEEC
Confidence 45554334899999999999988
No 163
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=34.97 E-value=27 Score=25.26 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=17.8
Q ss_pred ccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
++.|...+ +++||+|.+-||+.|+
T Consensus 30 ~gspA~~aG~L~~GD~Il~ing~~v~ 55 (88)
T 3e17_A 30 RTGLATKDGNLHEGDIILKINGTVTE 55 (88)
T ss_dssp TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 44444333 8999999999999773
No 164
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=34.37 E-value=8.1 Score=29.17 Aligned_cols=25 Identities=0% Similarity=0.151 Sum_probs=18.0
Q ss_pred eeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 128 VVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 128 ~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
+.+|.|...+ +++||+|.+-||+.|
T Consensus 39 V~~gspA~~aG~L~~GD~Il~Vng~~v 65 (106)
T 4amh_A 39 IIEGGAAHKDGKLQIGDKLLAVNNVAL 65 (106)
T ss_dssp ECTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred ECCCCHHHHCCCCCCCCEEEEECCEEC
Confidence 3344444332 899999999999877
No 165
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=34.09 E-value=1.4e+02 Score=27.02 Aligned_cols=35 Identities=6% Similarity=-0.050 Sum_probs=24.5
Q ss_pred cCc-chHHHHHHHHHHHHhc--CCCeEEEEeeeeeccC
Q psy6043 98 RDK-CGAAVVAGFMKAVAML--QPKVRVVGALAVVRNS 132 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l--~~~vnV~~il~~~EN~ 132 (282)
.|| +|.|+.+.+++++.+. +++.+|..+.-..|=.
T Consensus 102 ~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 139 (393)
T 1vgy_A 102 ADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEG 139 (393)
T ss_dssp TTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 377 6677778888887764 3567787777777664
No 166
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.78 E-value=6.3 Score=29.58 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.4
Q ss_pred ccCCCCCC--CCCCceEEccCCeEE
Q psy6043 130 RNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
+|.|...+ +++||+|.+.||+.|
T Consensus 48 ~~s~A~~aG~L~~GD~Il~Vng~~v 72 (113)
T 1um7_A 48 AGGPADLSGELRRGDRILSVNGVNL 72 (113)
T ss_dssp SSSHHHHTTCCCTTCEEEEESSCBC
T ss_pred CCCHHHHcCCCCCCCEEEEECCEEC
Confidence 34443333 899999999999987
No 167
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=33.77 E-value=7.1 Score=29.63 Aligned_cols=37 Identities=5% Similarity=0.153 Sum_probs=24.4
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEEecCCCcccceehhhhhHHHH
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMA 173 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya~ 173 (282)
.+|.|...+ +++||+|.+-||+.|+ + +-..|+..+.+
T Consensus 41 ~~~spA~~aG~L~~GD~Il~Vng~~v~--~------~~~~~~~~~l~ 79 (108)
T 3cbz_A 41 MKGGAVAADGRIEPGDMLLQVNDMNFE--N------MSNDDAVRVLR 79 (108)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEETT--S------CCHHHHHHHHH
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC--C------CCHHHHHHHHH
Confidence 345554432 8999999999999874 2 23456666554
No 168
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=33.67 E-value=7.9 Score=30.07 Aligned_cols=15 Identities=0% Similarity=0.131 Sum_probs=14.1
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 73 L~~GD~Il~ing~~v 87 (128)
T 2db5_A 73 LKENDQILAINHTPL 87 (128)
T ss_dssp CCSSCBEEEESSCBC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999887
No 169
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.61 E-value=14 Score=29.10 Aligned_cols=26 Identities=8% Similarity=0.145 Sum_probs=19.1
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ +++||+|.+-||+.|+
T Consensus 72 V~~gspA~~aGL~~GD~Il~Vng~~v~ 98 (132)
T 3l4f_D 72 VDEGGVAWRAGLRMGDFLIEVNGQNVV 98 (132)
T ss_dssp ECTTSGGGGGTCCTTCEEEEESSSBCT
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3445554333 9999999999999873
No 170
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=33.17 E-value=13 Score=28.18 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=17.5
Q ss_pred ccCCCCCC-C-CCCceEEccCCeEEE
Q psy6043 130 RNSCGENS-Y-VSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~a-~-~pgDVi~s~~GkTVE 153 (282)
+|.|...+ . ++||+|.+-||+.|+
T Consensus 57 ~~spA~~aGll~~GD~I~~vng~~v~ 82 (113)
T 1va8_A 57 KGGAAEKSGLLHEGDEVLEINGIEIR 82 (113)
T ss_dssp TTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 44443332 5 999999999999883
No 171
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=33.03 E-value=7.7 Score=35.84 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.9
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...| +++||||++.||+.|+
T Consensus 270 V~~~spA~~aGL~~GDvI~~ing~~v~ 296 (345)
T 3stj_A 270 VLPGSGSAKAGVKAGDIITSLNGKPLN 296 (345)
T ss_dssp ECTTSHHHHHTCCTTCEECEETTEECS
T ss_pred eccCChHHHcCCCCCCEEEEECCEECC
Confidence 3345555554 8999999999999885
No 172
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=33.00 E-value=9.3 Score=34.67 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=19.9
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...+ +|+||||++.||+.|+
T Consensus 263 V~~~spA~~aGl~~GDvI~~ing~~v~ 289 (325)
T 1lcy_A 263 VILGSPAHRAGLRPGDVILAIGEQMVQ 289 (325)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred eCcCChHHHCCCCCCCEEEEECCEEcC
Confidence 3455555555 8999999999999883
No 173
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=32.80 E-value=1.3e+02 Score=27.88 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeeeeeccC-CC-----CC---CCCCCceEEccCCeEEEecCCCcccceehhhhhHHHHHhh
Q psy6043 106 VAGFMKAVAMLQPKVRVVGALAVVRNS-CG-----EN---SYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKA 176 (282)
Q Consensus 106 V~ga~~a~a~l~~~vnV~~il~~~EN~-i~-----~~---a~~pgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya~~~~ 176 (282)
+.-++..++..++|+ +-+++|= .+ .. ....-++-.++.-..+.|...|.+ -+.+++..|.+.+
T Consensus 181 ~~Eal~~A~~~~lpv-----i~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~---av~~a~~~A~~~~ 252 (368)
T 1w85_A 181 FYEGINFAGAFKAPA-----IFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPL---AVYAAVKAARERA 252 (368)
T ss_dssp HHHHHHHHHHTTCCE-----EEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCE-----EEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHH---HHHHHHHHHHHHH
Confidence 445566777888882 2333441 11 00 112234455677777787666654 3445555554433
Q ss_pred hhcCCCceEEeeccc
Q psy6043 177 KDAVNPHLFTIATLT 191 (282)
Q Consensus 177 ~~~~~p~iIDiATLT 191 (282)
.+..+|.+||+-|--
T Consensus 253 r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 253 INGEGPTLIETLCFR 267 (368)
T ss_dssp HTTSCCEEEEEECCC
T ss_pred HhcCCCEEEEEEeec
Confidence 234578999998854
No 174
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=32.49 E-value=13 Score=29.01 Aligned_cols=26 Identities=4% Similarity=0.231 Sum_probs=18.7
Q ss_pred eeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
+.+|.|...+ +++||+|.+-||+.|+
T Consensus 62 V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 62 IIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp CCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred ECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 3445444333 9999999999998773
No 175
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.99 E-value=54 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.392 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHhhcCCCC-eEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCC
Q psy6043 2 APPKVEEYILETFKNTPS-IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPT 63 (282)
Q Consensus 2 tP~~~a~~~~~~~~~~~~-v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~ 63 (282)
+|+.+-+-++++.+++.. +-|-|.|.++|.++-..-.-+.| ++++++-|...
T Consensus 34 spqelkdsieelvkkynativvvvvddkewaekairfvkslg----------aqvliiiydqd 86 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLG----------AQVLIIIYDQD 86 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHC----------CCCEEEEECSC
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcC----------CeEEEEEEeCc
Confidence 699999999999999874 45667788888887655444443 34556667543
No 176
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=31.50 E-value=19 Score=35.85 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=21.9
Q ss_pred eccCCCCCCCCCCceEEccCCeEEEec
Q psy6043 129 VRNSCGENSYVSDEVVVSRAGKRIRVT 155 (282)
Q Consensus 129 ~EN~i~~~a~~pgDVi~s~~GkTVEI~ 155 (282)
..+.|...+.|+||||++.||+.|...
T Consensus 285 ~~~spA~~al~~GDvI~~idg~~V~~~ 311 (539)
T 4fln_A 285 EPTSDASKVLKEGDVIVSFDDLHVGCE 311 (539)
T ss_dssp CTTSGGGGTCCTTCEEEEETTEECBSS
T ss_pred cCCChHHhCccCCCEEEEECCEEeCcC
Confidence 456666677999999999999998643
No 177
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=31.24 E-value=7.7 Score=30.08 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=14.1
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|.+.||+.|
T Consensus 65 L~~GD~I~~vng~~v 79 (129)
T 2dmz_A 65 IQVNDKIVAVDGVNI 79 (129)
T ss_dssp CCSSCBEEEETTBCC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999887
No 178
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.99 E-value=5.1 Score=30.30 Aligned_cols=16 Identities=0% Similarity=-0.107 Sum_probs=14.5
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 63 L~~GD~Il~vng~~v~ 78 (111)
T 1uju_A 63 LRVGLRLLEVNQQSLL 78 (111)
T ss_dssp CCTTCBCCBBSSCBCT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998773
No 179
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=30.47 E-value=10 Score=32.14 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=22.0
Q ss_pred eeeeccCCCCCC-CCCC-ceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS-YVSD-EVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pg-DVi~s~~GkTVE 153 (282)
.-..+|.|...| +++| |+|++.||+.|+
T Consensus 21 ~~V~~~SpA~~AGL~~G~D~I~~ing~~v~ 50 (209)
T 3rle_A 21 LRVQENSPGHRAGLEPFFDFIVSINGSRLN 50 (209)
T ss_dssp EEECTTSHHHHTTCCTTTEEEEEETTEECC
T ss_pred EEECCCCHHHHCCCCcCCeEEEEECCEECc
Confidence 345677776654 8999 999999999874
No 180
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=30.25 E-value=11 Score=34.23 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=0.0
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.-..+|.|...+ +++||+|++.||+.|
T Consensus 259 ~~v~~~spA~~aGl~~GD~I~~ing~~v 286 (332)
T 3num_A 259 IEVIPDTPAEAGGLKENDVIISINGQSV 286 (332)
T ss_dssp ----------------------------
T ss_pred EEeccCCChHHcCCCCCCEEEEECCEEC
Confidence 344567777666 999999999999998
No 181
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=29.91 E-value=30 Score=32.81 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.6
Q ss_pred eeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
-..+|.|...+ +++||+|++.||+.|+
T Consensus 269 ~V~~~spA~~aGL~~GD~I~~vnG~~v~ 296 (436)
T 4a8c_A 269 EVLPGSGSAKAGVKAGDIITSLNGKPLN 296 (436)
T ss_pred EECCCChHHHCCCCCCCEEEEECCEECC
Confidence 34567766665 9999999999999885
No 182
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=29.73 E-value=9.2 Score=29.57 Aligned_cols=24 Identities=0% Similarity=-0.047 Sum_probs=17.8
Q ss_pred ccCCCCC-C-CCCCceEEccCCeEEE
Q psy6043 130 RNSCGEN-S-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 130 EN~i~~~-a-~~pgDVi~s~~GkTVE 153 (282)
+|.|... . +++||+|.+-||+.|+
T Consensus 60 ~~spA~~aG~L~~GD~Il~Ing~~v~ 85 (124)
T 2daz_A 60 PEGPAAADGRMRIGDELLEINNQILY 85 (124)
T ss_dssp TTSHHHHHTCCCTTCEECEESSCBCT
T ss_pred CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 3444433 2 8999999999999883
No 183
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=29.60 E-value=12 Score=31.00 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=19.4
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|-..+ +++||+|.+.||+.|+
T Consensus 53 ~~~spA~~aG~L~~GD~Il~vng~~v~ 79 (206)
T 3r0h_A 53 YPEGQVAADKRLKIFDHICDINGTPIH 79 (206)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECC
T ss_pred CCCChHHhcCCCCCCCEEEEECCEEcC
Confidence 355555444 8999999999999884
No 184
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=29.40 E-value=10 Score=31.35 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=19.5
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 41 ~~~spA~~aggl~~GD~I~~vng~~v~ 67 (200)
T 2qt5_A 41 RQGGIAARSDQLDVGDYIKAVNGINLA 67 (200)
T ss_dssp CTTSHHHHTTSCCTTCEEEEETTEECT
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 355555544 9999999999999884
No 185
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=29.34 E-value=9.7 Score=29.66 Aligned_cols=16 Identities=6% Similarity=0.316 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 72 L~~GD~Il~VNg~~v~ 87 (118)
T 3b76_A 72 IKTGDILLNVDGVELT 87 (118)
T ss_dssp SCTTCEEEEETTEEGG
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999885
No 186
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A
Probab=29.33 E-value=1.3e+02 Score=27.44 Aligned_cols=32 Identities=13% Similarity=-0.055 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 100 KCGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 100 M~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
.+|.|+.+++++++.+.+ ++.+|.-+.-..|=
T Consensus 96 k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE 129 (423)
T 1z2l_A 96 QFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE 129 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcc
Confidence 367788899999988754 56777766655554
No 187
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=29.11 E-value=14 Score=27.61 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=19.5
Q ss_pred eeccCCCCC--CCCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGEN--SYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~--a~~pgDVi~s~~GkTVE 153 (282)
+.+|.|... .+++||+|.+-||+.|+
T Consensus 42 V~~~s~A~~a~gL~~GD~Il~Ing~~v~ 69 (103)
T 2dc2_A 42 IHPGQPADRCGGLHVGDAILAVNGVNLR 69 (103)
T ss_dssp ECTTSHHHHHTCCCSSEEEEEETTEEST
T ss_pred ECCCCHHHHhCCCCCCCEEEEECCEECC
Confidence 344555444 58999999999999884
No 188
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=28.93 E-value=14 Score=30.45 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=18.7
Q ss_pred eccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.++.+...+ +++||+|.+-||+.|+
T Consensus 144 ~~gs~A~~aG~L~~GD~Il~VNg~~v~ 170 (206)
T 3r0h_A 144 IQGQYPEIDSKLQRGDIITKFNGDALE 170 (206)
T ss_dssp CTTSCHHHHHHCCTTCEEEEETTEECT
T ss_pred CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 345444443 8999999999999883
No 189
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=28.89 E-value=2.5e+02 Score=24.81 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEEccCC
Q psy6043 5 KVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGG 84 (282)
Q Consensus 5 ~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTFDsGG 84 (282)
..++++.+.|++++ .+|++-.-.. ... .|. ..+.+=|+.++.|.. ++.|+| |-=|||=+
T Consensus 49 ~a~~~i~~~l~~~g-~~v~~q~~~~---~~~-------~~~----~~~~~Nii~~~~g~~---~~~i~l---~aH~Ds~~ 107 (309)
T 4fuu_A 49 ACGNYLAGKLEAFG-AKVTNQYADL---IAY-------DGT----LLKARNIIGSYKPES---KKRIAL---FAHWDTRP 107 (309)
T ss_dssp HHHHHHHHHHHHTT-CEEEEEEEEE---ECT-------TSC----EEEEEEEEEEESTTC---SSEEEE---EEECCCCS
T ss_pred HHHHHHHHHHHHcC-CeeEEEeEEe---ccC-------CCC----cceeEEEEEEECCCC---CceEEE---EeecCCCC
Confidence 45688888888888 7776532110 110 011 012344666777653 344444 45788833
Q ss_pred CCCC------CCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeec
Q psy6043 85 ADIK------ISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVR 130 (282)
Q Consensus 85 ~slK------p~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~E 130 (282)
..=+ +.....+---|-+|.|+++-+.+++.+.+++..|+-+.=-+|
T Consensus 108 ~~~~~~~~~~~~~~~~GA~D~aSG~a~lLE~ar~l~~~~~~~~i~~~~~~~E 159 (309)
T 4fuu_A 108 WADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQQPELGIDIIFLDAE 159 (309)
T ss_dssp CCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHHSCCSSEEEEEEECSS
T ss_pred CCCCccccccccCCcCCcccCchhHHHHHHHHHHHhhcCCCCceEEEeeccc
Confidence 3211 011112333567899999999999999888877665544344
No 190
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=28.45 E-value=13 Score=28.57 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
.++||+|.+.||+.|+
T Consensus 64 L~~GD~Il~ing~~v~ 79 (125)
T 3hpk_A 64 VAAGDEITGVNGRSIK 79 (125)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999873
No 191
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=28.35 E-value=18 Score=28.17 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=14.5
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 62 L~~GD~Il~vng~~v~ 77 (129)
T 2kpk_A 62 METGDVIVSVNDTCVL 77 (129)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999873
No 192
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=28.15 E-value=23 Score=26.50 Aligned_cols=14 Identities=0% Similarity=0.332 Sum_probs=13.3
Q ss_pred CCCceEEccCCeEE
Q psy6043 139 VSDEVVVSRAGKRI 152 (282)
Q Consensus 139 ~pgDVi~s~~GkTV 152 (282)
++||+|.+-||+.|
T Consensus 46 ~~GD~I~~ing~~v 59 (112)
T 1qau_A 46 QAGDIILAVNDRPL 59 (112)
T ss_dssp CTTCEEEEETTEEC
T ss_pred CCCCEEEEECCEEC
Confidence 99999999999887
No 193
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=27.68 E-value=12 Score=30.32 Aligned_cols=24 Identities=0% Similarity=0.088 Sum_probs=18.4
Q ss_pred eccCCCCCC--CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
.+|.|...+ +++||+|.+.||+.|
T Consensus 43 ~~~spA~~aG~l~~GD~I~~vng~~v 68 (196)
T 3gsl_A 43 IPGGAAAQDGRLRVNDSILFVNEVDV 68 (196)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred CCCChHHhcCCCCCCCEEEEECCEEC
Confidence 455554332 999999999999987
No 194
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.31 E-value=19 Score=27.43 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=14.7
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+-||+.|+
T Consensus 68 L~~GD~Il~vng~~v~ 83 (117)
T 1ujd_A 68 LMEGMQVLEWNGIPLT 83 (117)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEEcC
Confidence 8999999999999874
No 195
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=27.28 E-value=19 Score=28.36 Aligned_cols=18 Identities=0% Similarity=0.143 Sum_probs=15.8
Q ss_pred CCCCCCceEEccCCeEEE
Q psy6043 136 NSYVSDEVVVSRAGKRIR 153 (282)
Q Consensus 136 ~a~~pgDVi~s~~GkTVE 153 (282)
..++|||+|..-||+.|+
T Consensus 48 aGL~~GD~Il~VNG~~v~ 65 (113)
T 3soe_A 48 QGLQKGDIIKEIYHQNVQ 65 (113)
T ss_dssp TTCCTTCEEEEETTEECT
T ss_pred CCCCCCCEEEEECCEECC
Confidence 458999999999999884
No 196
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=27.02 E-value=1.3e+02 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 101 CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 101 ~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
+|.|+.+.+++++.+.+ ++.+|..++-..|=
T Consensus 127 ~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE 159 (474)
T 2v8h_A 127 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAE 159 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcc
Confidence 67888899999988764 44566655555543
No 197
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=26.47 E-value=13 Score=29.96 Aligned_cols=16 Identities=0% Similarity=0.052 Sum_probs=14.8
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+-||+.|+
T Consensus 149 L~~GD~Il~Vng~~v~ 164 (196)
T 3gsl_A 149 LQIGDKILAVNSVGLE 164 (196)
T ss_dssp CCTTCEEEEETTEECS
T ss_pred CCCCCEEEEECCCcCC
Confidence 8999999999999883
No 198
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=26.37 E-value=14 Score=28.71 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=19.0
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+.+|.|...+ +++||+|.+-||+.|+
T Consensus 71 ~V~~~spA~~aG~L~~GD~Il~vng~~v~ 99 (128)
T 1nf3_C 71 RLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99 (128)
T ss_dssp EECTTCHHHHHTCCCTTCEEEEETTEEST
T ss_pred EECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 33344444433 6899999999999884
No 199
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.54 E-value=16 Score=28.34 Aligned_cols=25 Identities=4% Similarity=0.130 Sum_probs=18.6
Q ss_pred eccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|...+ +++||+|.+.||+.|+
T Consensus 69 ~~~spA~~aGL~~GD~I~~ing~~v~ 94 (126)
T 2yuy_A 69 KEGGPAFEAGLCTGDRIIKVNGESVI 94 (126)
T ss_dssp CSSSHHHHHTCCSSCCCCEETTEECS
T ss_pred CCCChHHHcCCCCCCEEEEECCEECC
Confidence 345444443 8999999999998774
No 200
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=25.27 E-value=39 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=20.8
Q ss_pred CCCCCCCCceEEccCCeEEEecCCCc
Q psy6043 134 GENSYVSDEVVVSRAGKRIRVTNTDA 159 (282)
Q Consensus 134 ~~~a~~pgDVi~s~~GkTVEI~NTDA 159 (282)
++..|.| +.|+-.-|.||+..|+|.
T Consensus 11 ~~~~F~P-~~i~v~~G~~V~~~n~~~ 35 (98)
T 2plt_A 11 GALEFVP-KTLTIKSGETVNFVNNAG 35 (98)
T ss_dssp CCSSEES-SEEEECTTCEEEEEECSS
T ss_pred CCceEeC-CEEEECCCCEEEEEECCC
Confidence 3578889 457889999999999985
No 201
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.26 E-value=12 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred eeeccCCCCCC--CCCCceEEccCCeEEE
Q psy6043 127 AVVRNSCGENS--YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 127 ~~~EN~i~~~a--~~pgDVi~s~~GkTVE 153 (282)
.+.+|.|...+ .++||+|.+-||+.|+
T Consensus 49 ~V~~gspA~~aggL~~GD~Il~Ing~~v~ 77 (118)
T 1v6b_A 49 AVYEGGAAERHGGVVKGDEIMAINGKIVT 77 (118)
T ss_dssp ECCTTSHHHHHCSSCTTCEEEEESSCBCT
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 34456665554 8999999999999874
No 202
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=24.92 E-value=27 Score=25.22 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=14.2
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
.++||+|.+-||+.|
T Consensus 47 L~~GD~I~~ing~~v 61 (93)
T 3o46_A 47 IHVGDELREVNGIPV 61 (93)
T ss_dssp CCTTCEEEEETTEES
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999987
No 203
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=24.08 E-value=2.2e+02 Score=26.67 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeeeeeccC-CC-----CCCC---CCCceEEccCCeEEEecCCCcccceehhhhhHHHHHh
Q psy6043 105 VVAGFMKAVAMLQPKVRVVGALAVVRNS-CG-----ENSY---VSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEK 175 (282)
Q Consensus 105 aV~ga~~a~a~l~~~vnV~~il~~~EN~-i~-----~~a~---~pgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya~~~ 175 (282)
.+..++..++..++|+-+ +++|= .+ ...+ ..-++-.++.-..++|...|.+ -+.+++..|.+.
T Consensus 200 ~~~Eal~~A~~~~lpvi~-----vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~---av~~a~~~A~~~ 271 (400)
T 2bfd_A 200 DAHAGFNFAATLECPIIF-----FCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF---AVYNATKEARRR 271 (400)
T ss_dssp HHHHHHHHHHHTTCCEEE-----EEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCcCEEE-----EEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHH---HHHHHHHHHHHH
Confidence 456677777788886322 23442 11 0111 1234456677777887766654 234444444332
Q ss_pred hhhcCCCceEEeec
Q psy6043 176 AKDAVNPHLFTIAT 189 (282)
Q Consensus 176 ~~~~~~p~iIDiAT 189 (282)
+....+|.+|++-|
T Consensus 272 ar~~~~P~lIe~~t 285 (400)
T 2bfd_A 272 AVAENQPFLIEAMT 285 (400)
T ss_dssp HHHHTCCEEEEEEC
T ss_pred HHhCCCCEEEEEEe
Confidence 22245899999988
No 204
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=23.61 E-value=30 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=17.8
Q ss_pred ccCCCCC-CCCCCceEEccCCeEE
Q psy6043 130 RNSCGEN-SYVSDEVVVSRAGKRI 152 (282)
Q Consensus 130 EN~i~~~-a~~pgDVi~s~~GkTV 152 (282)
+|.|... .+++||+|.+.||+.|
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v 59 (166)
T 1w9e_A 36 ANSPASLVGLRFGDQVLQINGENC 59 (166)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEEC
T ss_pred CCChHHHcCCCCCCEEEEECCEEC
Confidence 4544333 3899999999999987
No 205
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=23.57 E-value=1.1e+02 Score=27.34 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcCCCCeEEEE
Q psy6043 4 PKVEEYILETFKNTPSIKINI 24 (282)
Q Consensus 4 ~~~a~~~~~~~~~~~~v~v~v 24 (282)
..+++++++.+++++ .++++
T Consensus 18 ~~~~~~l~~~l~~~g-~~~~~ 37 (340)
T 2fvg_A 18 GKVRDFIKSKIEGLV-DNLYT 37 (340)
T ss_dssp HHHHHHHHHHHGGGS-SEEEE
T ss_pred HHHHHHHHHHHHhhC-CEEEE
Confidence 467899999999998 77776
No 206
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=22.92 E-value=59 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=26.5
Q ss_pred EEEeeeeeccCCCC--CCCCCCceEEccCCeEEEecCCCcc-cceeh
Q psy6043 122 VVGALAVVRNSCGE--NSYVSDEVVVSRAGKRIRVTNTDAE-GRFAM 165 (282)
Q Consensus 122 V~~il~~~EN~i~~--~a~~pgDVi~s~~GkTVEI~NTDAE-GRLvL 165 (282)
+-|+++..|- ... +.+++||.|+ ++|.+.|.+ ||+-|
T Consensus 29 ~~Gllh~sel-~~~~~~~~~~Gd~V~------v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 29 VRGLLRPRDM-ISLRLENLNVGDEII------VQAIDVRPEKREIDF 68 (80)
T ss_dssp EEEEECGGGC-SSCCGGGCCTTCEEE------EEEEEEETTTTEEEE
T ss_pred CEEEEEHHHC-CcccceeeCCCCEEE------EEEEEEECCCCEEEE
Confidence 4578887773 222 3689999985 778888887 88765
No 207
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=22.58 E-value=29 Score=25.96 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=18.1
Q ss_pred eccCCCCC-C-CCCCceEEccCCeEEE
Q psy6043 129 VRNSCGEN-S-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 129 ~EN~i~~~-a-~~pgDVi~s~~GkTVE 153 (282)
.+|.|... . +++||+|.+-||+.|+
T Consensus 52 ~~~spA~~aG~L~~GD~Il~Vng~~v~ 78 (108)
T 2d92_A 52 VADGVAERSGGLLPGDRLVSVNEYCLD 78 (108)
T ss_dssp CTTCHHHHHTCCCTTCEEEEESSCBCT
T ss_pred CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 34444433 2 8999999999998874
No 208
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.46 E-value=29 Score=26.51 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=14.5
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
++|||+|.+-||+.|+
T Consensus 61 l~~GD~Il~Ing~~v~ 76 (117)
T 1v62_A 61 LHPGDHILSIDGTSME 76 (117)
T ss_dssp CCTTCBEEEETTEETT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999874
No 209
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=22.42 E-value=47 Score=24.17 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.4
Q ss_pred CCCCCCCCceEEccCCeEEEecCCCc
Q psy6043 134 GENSYVSDEVVVSRAGKRIRVTNTDA 159 (282)
Q Consensus 134 ~~~a~~pgDVi~s~~GkTVEI~NTDA 159 (282)
++..|.|. .|+-..|.||+..|+|.
T Consensus 10 ~~~~F~P~-~i~v~~G~tV~~~n~~~ 34 (99)
T 1plc_A 10 GSLAFVPS-EFSISPGEKIVFKNNAG 34 (99)
T ss_dssp CCSCEESS-EEEECTTCEEEEEECSS
T ss_pred CcceEeCC-EEEECCCCEEEEEECCC
Confidence 35688885 57788999999999985
No 210
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=22.23 E-value=82 Score=29.29 Aligned_cols=34 Identities=15% Similarity=-0.037 Sum_probs=26.0
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeecc
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRN 131 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN 131 (282)
.|| +|.|+.+++++++.+.+ ++.+|..++-..|=
T Consensus 135 ~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 171 (479)
T 2zog_A 135 TDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEE 171 (479)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGG
T ss_pred ccChHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccc
Confidence 676 89999999999998865 56778766655553
No 211
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=21.84 E-value=20 Score=28.85 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=17.9
Q ss_pred eccCCCCCC-CCCCceEEccCCeEE
Q psy6043 129 VRNSCGENS-YVSDEVVVSRAGKRI 152 (282)
Q Consensus 129 ~EN~i~~~a-~~pgDVi~s~~GkTV 152 (282)
.++.+...+ +++||+|.+.||+.|
T Consensus 115 ~~~s~a~~aGl~~GD~I~~ing~~v 139 (166)
T 1w9e_A 115 VKDSSAARNGLLTEHNICEINGQNV 139 (166)
T ss_dssp CTTSHHHHTTCCSSEEEEEETTEEC
T ss_pred ccCCHHHHcCCCCCCEEEEECCEEC
Confidence 344443333 899999999999887
No 212
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=21.70 E-value=23 Score=29.90 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=19.3
Q ss_pred eeccCCCCCC-CCC-CceEEccCCeEEEecCCC
Q psy6043 128 VVRNSCGENS-YVS-DEVVVSRAGKRIRVTNTD 158 (282)
Q Consensus 128 ~~EN~i~~~a-~~p-gDVi~s~~GkTVEI~NTD 158 (282)
..++.|...| .+| ||+|++.||+ |.|.+
T Consensus 119 V~~~spA~~aGl~~~GD~I~~ing~---v~~~~ 148 (209)
T 3rle_A 119 VESNSPAALAGLRPHSDYIIGADTV---MNESE 148 (209)
T ss_dssp ECTTSHHHHHTCCTTTEEEEEESSC---CCSSS
T ss_pred eCCCChHHHCCCCCCCCEEEECCCE---eCCHH
Confidence 3455554443 899 9999999996 55543
No 213
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=21.40 E-value=24 Score=27.09 Aligned_cols=15 Identities=0% Similarity=0.310 Sum_probs=13.8
Q ss_pred C-CCCceEEccCCeEE
Q psy6043 138 Y-VSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~-~pgDVi~s~~GkTV 152 (282)
. ++||+|.+.||+.|
T Consensus 51 ll~~GD~I~~ing~~v 66 (127)
T 1b8q_A 51 LIQAGDIILAVNDRPL 66 (127)
T ss_dssp SCCTTTCCCEETTEEC
T ss_pred CCCCCCEEEEECCEEC
Confidence 5 99999999999877
No 214
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=21.13 E-value=1.2e+02 Score=25.98 Aligned_cols=25 Identities=36% Similarity=0.826 Sum_probs=20.1
Q ss_pred CceEEEEEecCCCCCCCCceEeeccceEEccC
Q psy6043 52 QGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTG 83 (282)
Q Consensus 52 ~p~~v~l~Y~~~~~~~~~~iaLVGKGiTFDsG 83 (282)
+..++.++|.|+. ..+|+|| .|..|
T Consensus 15 ~~~V~~IeyDP~R---sA~IAlv----~y~dg 39 (178)
T 1giy_D 15 PGRVATIEYDPNR---SANIALI----NYADG 39 (178)
T ss_pred cEEEEEEEECCCC---CeEEEEE----EecCC
Confidence 6789999999986 4689998 56655
No 215
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=21.03 E-value=21 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=19.8
Q ss_pred eeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 128 VVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 128 ~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
..+|.|...+ +++||+|++.||+.|+
T Consensus 289 V~~~spA~~aGL~~GDvI~~vnG~~v~ 315 (451)
T 3pv2_A 289 VNPNSPAELAGLKAGDIITQINDTKIT 315 (451)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred cCCCChHHHcCCCCCCEEEEECCEEcC
Confidence 3455555444 8999999999999884
No 216
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=20.84 E-value=38 Score=32.31 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=21.7
Q ss_pred eeeeccCCCCCC-CCCCceEEccCCeEEE
Q psy6043 126 LAVVRNSCGENS-YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 126 l~~~EN~i~~~a-~~pgDVi~s~~GkTVE 153 (282)
.-..+|.|...| +++||+|++.||+.|.
T Consensus 291 ~~V~~gspA~~AGL~~GDvI~~inG~~v~ 319 (448)
T 1ky9_A 291 SQVLPNSSAAKAGIKAGDVITSLNGKPIS 319 (448)
T ss_dssp CCCTTCSSSTTTTCCTTCEECBSSSSBCC
T ss_pred EEeccCCHHHHcCCCCCCEEEEECCEEcC
Confidence 344567776654 8999999999999873
No 217
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=20.80 E-value=91 Score=29.33 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=27.3
Q ss_pred cCc-chHHHHHHHHHHHHhcC--CCeEEEEeeeeeccC
Q psy6043 98 RDK-CGAAVVAGFMKAVAMLQ--PKVRVVGALAVVRNS 132 (282)
Q Consensus 98 ~DM-~GAAaV~ga~~a~a~l~--~~vnV~~il~~~EN~ 132 (282)
.|| +|.|+.+++++++.+.+ ++.+|..++-..|=.
T Consensus 142 ~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 179 (485)
T 3dlj_A 142 TDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEA 179 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred ccCcHHHHHHHHHHHHHHHhCCCCCccEEEEEEccccc
Confidence 466 78899999999999865 567888777777653
No 218
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=20.79 E-value=21 Score=21.46 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=9.0
Q ss_pred CceEEeeccch
Q psy6043 182 PHLFTIATLTG 192 (282)
Q Consensus 182 p~iIDiATLTG 192 (282)
..+||+|||+-
T Consensus 6 akmidfatlsk 16 (27)
T 3owt_C 6 AKMIDFATLSK 16 (27)
T ss_pred ceeeehHHHHH
Confidence 36999999974
No 219
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=20.67 E-value=31 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=14.3
Q ss_pred CCCCceEEccCCeEE
Q psy6043 138 YVSDEVVVSRAGKRI 152 (282)
Q Consensus 138 ~~pgDVi~s~~GkTV 152 (282)
+++||+|..-||+.|
T Consensus 84 L~~GD~Il~ing~~v 98 (131)
T 1wfg_A 84 LRPGDEVLEWNGRLL 98 (131)
T ss_dssp CCTTCEEEEETTEEC
T ss_pred CCCCCEEEEECCEEC
Confidence 899999999999987
No 220
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=20.64 E-value=89 Score=28.20 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=59.3
Q ss_pred EEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcccceeh----hhhhHHHHHhhhhcCCCc----eEEeeccchh
Q psy6043 122 VVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAM----ADVLAHMAEKAKDAVNPH----LFTIATLTGH 193 (282)
Q Consensus 122 V~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAEGRLvL----ADaL~ya~~~~~~~~~p~----iIDiATLTGa 193 (282)
+-|+||..|-+| +..|++||-|+.+ =++|.+++-.++++| .+.|..--++ .=|. +|.|-...
T Consensus 38 ~EgiLP~~Eqip-~E~~~~GDrIkay---V~~V~~~~~gpqIiLSRt~p~lvk~Lfe~----EVPEI~dG~veI~~ia-- 107 (251)
T 2asb_A 38 SEGVIPAAEQVP-GESYEHGNRLRCY---VVGVTRGAREPLITLSRTHPNLVRKLFSL----EVPEIADGSVEIVAVA-- 107 (251)
T ss_dssp EEEEECGGGSCT-TCCCCTTCEEEEE---EEEEECCSSSCEEEEESSCHHHHHHHHHH----HCHHHHTTSEEEEEEE--
T ss_pred eEEEEcHHHcCC-CccCCCCCEEEEE---EEEEEcCCCCCEEEEEeccHHHHHHHHHh----cchHhhcCeEEEEEEe--
Confidence 458999998876 5899999999875 456677777778887 4555544322 1231 33332221
Q ss_pred hHhhhCC-CeeEEeeCCcccHHHHH------HHHHHH-hhhhCCCc
Q psy6043 194 ACLTVGE-GYSIVMDNGPARQENNA------VLLSET-GEAMGDPF 231 (282)
Q Consensus 194 ~~~ALG~-~~ag~~~n~~~~~~~l~------~~l~~a-g~~~ge~~ 231 (282)
+-+ |. ..-+++||++..+.-=+ .+++.. .+..||++
T Consensus 108 -Re~-G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekI 151 (251)
T 2asb_A 108 -REA-GHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKI 151 (251)
T ss_dssp -EET-TTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEE
T ss_pred -cCC-CceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeE
Confidence 222 33 34567888764432111 456655 67778886
No 221
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=20.63 E-value=26 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=14.6
Q ss_pred CCCCceEEccCCeEEE
Q psy6043 138 YVSDEVVVSRAGKRIR 153 (282)
Q Consensus 138 ~~pgDVi~s~~GkTVE 153 (282)
+++||+|.+.||+.|.
T Consensus 128 L~~GD~Il~vng~~v~ 143 (192)
T 3k1r_A 128 LQVGDEIVRINGYSIS 143 (192)
T ss_dssp CCTTEEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998873
No 222
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=20.55 E-value=20 Score=29.56 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred EEeeeeeccCCCCCC--CCCCceEEccCCeEE
Q psy6043 123 VGALAVVRNSCGENS--YVSDEVVVSRAGKRI 152 (282)
Q Consensus 123 ~~il~~~EN~i~~~a--~~pgDVi~s~~GkTV 152 (282)
+-+--+.+|.|...| +++||+|.+.||+.|
T Consensus 38 ~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v 69 (196)
T 1p1d_A 38 PLISYIEADSPAERCGVLQIGDRVMAINGIPT 69 (196)
T ss_dssp EEEEECCTTSHHHHTSCCCSSCCEEEETTBCS
T ss_pred EEEEEECCCCHHHHcCCCCCCCEEEEECCEEC
Done!