RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6043
(282 letters)
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962
aminopeptidase, hydrolase, manganese, metal-binding,
protea structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 157 bits (399), Expect = 5e-45
Identities = 73/212 (34%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 20 IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
K+ II + K L+ E+P AV RA S +I L++ + + LVGKGV
Sbjct: 202 AKVKII-ESKDLETEFPAIYAVGRAGS----RPPLLIDLKWGDIKAPK---VTLVGKGVC 253
Query: 80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYV 139
+D+GG DIK G M M +D GAA G + + + Q VR+ + V N+ G SY
Sbjct: 254 FDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYR 313
Query: 140 SDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVG 199
+VV +RA K I +TNTDAEGR +AD LA ++ D + +TLTG A + +G
Sbjct: 314 PGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLI----IDFSTLTGAARIALG 369
Query: 200 EGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ N Q++ A L + DP
Sbjct: 370 PNLPALFAN----QDSLAQALIDASLKTDDPL 397
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 148 bits (374), Expect = 2e-41
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 13/212 (6%)
Query: 20 IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
KI +I+ ++L + V +A + L +E S+ + LVGKGV
Sbjct: 202 SKITVIRGEELLKAGFGGIYHVGKAGP----TPPAFVVLSHEVPGSTEH--IALVGKGVV 255
Query: 80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYV 139
YDTGG IK M M RD GAA + A+ + L +V N+ +
Sbjct: 256 YDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANK 315
Query: 140 SDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVG 199
D+++ +GK + + NTDAEGR +AD + + E K +F +ATLTG G
Sbjct: 316 PDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATT---IFDMATLTGAQAWLSG 372
Query: 200 EGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ M N E + + G+A GD
Sbjct: 373 RLHGAAMTN----DEQLENEIIKAGKASGDLV 400
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 145 bits (368), Expect = 2e-40
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 15/232 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
+ E + ++ + + + AV R + + +EY
Sbjct: 181 CTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGS----YMSNYTVCMEY 236
Query: 61 EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
+ + + + LVGKG+ +D GG IK + M M D G A V G MKA+AML V
Sbjct: 237 KG-GNEGDAPIVLVGKGLVFDNGGICIKQAAGMDSMKMDMGGVAAVMGTMKAIAMLNLPV 295
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
VVG + + N+ SY +V+ S G + V+NTDAEGR + D L + K K
Sbjct: 296 NVVGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAEGRLVLCDTLTY-IGKYKPKA 354
Query: 181 NPHLFTIATLTGHACLT-VGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ +ATLTG A + +G+ YS + N + A L + A D
Sbjct: 355 ---VIDLATLTG-AMIISLGDAYSGMFAN----SDKLANSLEQAANASNDLI 398
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 145 bits (368), Expect = 2e-40
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 12/213 (5%)
Query: 20 IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
+++I + ++ Y +V +AA R++ L Y P +P + LVGKG+
Sbjct: 239 FDVDVICGDDLCERGYGGIYSVGKAAF----EAPRLVTLLYTP-KGTPVKKVSLVGKGIV 293
Query: 80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYV 139
YD GG +K + M M D GAA V LQ V++ L + N+ G SY
Sbjct: 294 YDCGGLALKPADYMKLMKHDMGGAAAVFCGFLTAVRLQQPVQLSCTLCLAENAIGPKSYR 353
Query: 140 SDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTV 198
+D+++V ++GK + V NTDAEGR + D + H + P + +ATLTG +
Sbjct: 354 NDDIIVMKSGKTVEVINTDAEGRIVLGDGVFHATNELS--FTPDVVIDMATLTGAQGIAT 411
Query: 199 GEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
G ++ + N +E + G G+
Sbjct: 412 GRHHAGLYVN----EEGAEAAMLRAGRESGETC 440
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 144 bits (366), Expect = 3e-40
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 14/231 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
P + + P + I+ + ++ +V R ++ ++ R+I L++
Sbjct: 193 CTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLSVARGSA----NRPRLIVLKW 248
Query: 61 EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
+ LVGKG+T+DTGG ++K G + M D CG A V G A + +
Sbjct: 249 NGGGDARP--YVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPI 306
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
+V + V N+ N+Y +V+ S +GK I V NTDAEGR + D L + +A+
Sbjct: 307 NLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEAL 366
Query: 181 NPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ATLTG + +G + +M ++ A L GE + D
Sbjct: 367 ----VDVATLTGACMVALGHQTAGLMSK----HDDLANELLAAGEHVFDRA 409
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 144 bits (365), Expect = 5e-40
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 14/213 (6%)
Query: 20 IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
+ +I + ++ + + AV + + ++ + +EY+ +S + LVGKG+T
Sbjct: 218 VITRVIGEQQMKELGMHSYLAVGQGSQ----NESLMSVIEYKGNASEDARPIVLVGKGLT 273
Query: 80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYV 139
+D+GG IK S M M D CGAA V G M+ VA LQ + V+G LA N G +Y
Sbjct: 274 FDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYR 333
Query: 140 SDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLT-V 198
+V+ + +G+ + V NTDAEGR + DVL + E+ + + +ATLTG AC+ +
Sbjct: 334 PGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTY-VERFEPEA---VIDVATLTG-ACVIAL 388
Query: 199 GEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
G + +M N A L E GD
Sbjct: 389 GHHITGLMAN----HNPLAHELIAASEQSGDRA 417
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 143 bits (363), Expect = 1e-39
Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 15/232 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
+ P E I+ FKNT +K+++ ++ + + L AV + + H+ R++ + Y
Sbjct: 214 LTPQTFAEDIVNHFKNTK-VKVDVKDYDTLVSEGFGLLQAVGKGSK----HKPRLVTITY 268
Query: 61 EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
+ + LVGKG+TYD+GG IK MA M D CGAA V G ++A + LQ V
Sbjct: 269 NGKDKD-EAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPV 327
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
+VG LA N E S D+V + +G+ + V NTDAEGR +AD + + A + + +V
Sbjct: 328 NIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFY-ANQYQPSV 386
Query: 181 NPHLFTIATLTGHACL-TVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ ATLTG A + +G+ + + + + + + +
Sbjct: 387 ---IMDFATLTG-AAIVALGDDKAAAF---ESNSKVILNDILQISSEVDEMV 431
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 142 bits (361), Expect = 2e-39
Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 15/232 (6%)
Query: 1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
P + E E K ++K+ ++ + KI D F AV + + R+I L Y
Sbjct: 197 CHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSD----QPPRLIVLNY 252
Query: 61 EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
+ LVGKG+T+DTGG +K M M D CGAA V G ++AV LQ V
Sbjct: 253 QG-GKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPV 311
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
+V LA N + ++V + +G+ + + NTDAEGR + D L + AE+ K
Sbjct: 312 NLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTY-AERFKPQA 370
Query: 181 NPHLFTIATLTGHACLT-VGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+ IATLTG AC+ +G + +M N L + G+ D
Sbjct: 371 ---VIDIATLTG-ACIVALGSHTTGLMGNNDDLVGQ----LLDAGKRADDRA 414
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 136 bits (345), Expect = 3e-37
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 54 RVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAV 113
+ + Y+ + ++ L VGKG+T+D+GG IK + NM M D GAA + + +
Sbjct: 228 VFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSA 287
Query: 114 AMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMA 173
A L + +VG + N + +VV +R GK I+V NTDAEGR +AD L + A
Sbjct: 288 AKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCY-A 346
Query: 174 EKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
V + ATLTG + +G G + V N L E GD
Sbjct: 347 HTFNPKV---IINAATLTGAMDIALGSGATGVFTN----SSWLWNKLFEASIETGDRV 397
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 134 bits (339), Expect = 3e-36
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 20 IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
++ I+ ++ + + + +V + + + + I L Y+ + LVGKG+T
Sbjct: 240 LEYKILGVKELEELKMGAYLSVGKGSM----YPNKFIHLTYKS-KGDVKKKIALVGKGIT 294
Query: 80 YDTGGADIKI--SGNMAGMARDKCGAAVVAGFMKAVAMLQPK-VRVVGALAVVRNSCGEN 136
+D+GG ++K + M D G A V G V L+P+ V + AV N +N
Sbjct: 295 FDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKN 354
Query: 137 SYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACL 196
SY +++ + GK I V NTDAEGR +AD L + AEK ++ IATLTG A L
Sbjct: 355 SYRPGDIITASNGKTIEVGNTDAEGRLTLADALVY-AEKLGVD---YIVDIATLTG-AML 409
Query: 197 T-VGEGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
+G Y+ V N E + ++ + +P
Sbjct: 410 YSLGTSYAGVFGN----NEELINKILQSSKTSNEPV 441
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.3
Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 30/210 (14%)
Query: 84 GADIKISGNMAGMARDKCGAAVVA---GFMKAVAMLQPKVRVVGALAVVRNSCGENSYVS 140
G I MA A DK G +V A G + V+ ++ +
Sbjct: 1198 GVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTRE 1257
Query: 141 DEVVVSRAGKR--IR--VTNTDAEGRFA-MADVLAHMAEKAKDAVNPHLFTIATLTGHAC 195
++ + ++ +E + + + + +A+ +
Sbjct: 1258 AQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYK-- 1315
Query: 196 LTVGEGYSIVM-----DNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEG 250
+ + G + T D E + I + + EG
Sbjct: 1316 ---RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEM-MKHL-GRSEG 1370
Query: 251 EDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280
+I K GH GA+G
Sbjct: 1371 NPVIGVFQKF----LTGH------PKGAAG 1390
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Length = 199
Score = 27.2 bits (60), Expect = 4.6
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 22 INIIKDPKILDKEYPLFSAVNRAAS 46
IN I K+Y F V A S
Sbjct: 46 INNKTKCSIAQKDYSKF-MVENALS 69
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.2 bits (61), Expect = 7.4
Identities = 4/28 (14%), Positives = 7/28 (25%), Gaps = 4/28 (14%)
Query: 84 GADIKISGNMA---GMARDK-CGAAVVA 107
G + + G G + A
Sbjct: 379 GIRTAVDDTVLRVDGPCPPHRPGTDLRA 406
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 27.4 bits (60), Expect = 7.8
Identities = 6/62 (9%), Positives = 16/62 (25%)
Query: 148 AGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMD 207
G + ++ ++ A + + P I + V Y + +
Sbjct: 208 KGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQPGKFKGAMAVSGAYELKIG 267
Query: 208 NG 209
Sbjct: 268 KK 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,338,492
Number of extensions: 271600
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 22
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)