RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6043
(282 letters)
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
domain {Escherichia coli, PepA [TaxId: 562]}
Length = 325
Score = 133 bits (335), Expect = 1e-37
Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 20/281 (7%)
Query: 1 MAPPKVEEYILETFKNT-PSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE 59
+ + + ++ +I + ++ + + AV + + +++ + +E
Sbjct: 20 CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGS----QNESLMSVIE 75
Query: 60 YEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPK 119
Y+ +S + LVGKG+T+D+GG IK S M M D CGAA V G M+ VA LQ
Sbjct: 76 YKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLP 135
Query: 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
+ V+G LA N G +Y +V+ + +G+ + V NTDAEGR + DVL ++ +A
Sbjct: 136 INVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEA 195
Query: 180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
V +ATLTG + +G + +M N E GD + E
Sbjct: 196 V----IDVATLTGACVIALGHHITGLMANHNPLAHEL----IAASEQSGDRAWRLPLGDE 247
Query: 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280
+S + M + G G G FL +
Sbjct: 248 YQEQLESN-------FADMANIGGRPGGAITAGCFLSRFTR 281
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 325
Score = 116 bits (292), Expect = 2e-31
Identities = 71/276 (25%), Positives = 107/276 (38%), Gaps = 18/276 (6%)
Query: 1 MAPPKVEEYILETFKNT-PSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE 59
M P K E + E K+ + I I ++E F +V + + + +
Sbjct: 19 MTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGS----EEPPVFLEIH 74
Query: 60 YEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPK 119
Y+ + ++ L VGKG+T+D+GG IK + NM M D GAA + + + A L
Sbjct: 75 YKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLP 134
Query: 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
+ +VG + N + +VV +R GK I+V NTDAEGR +AD L +
Sbjct: 135 INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFN--- 191
Query: 180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
+ ATLTG + +G G + V N L E GD +
Sbjct: 192 -PKVIINAATLTGAMDIALGSGATGVFTNSSWLWNK----LFEASIETGDRVWRMPLFEH 246
Query: 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFL 275
R + S G AFL
Sbjct: 247 YTRQVIDCQLADV-----NNIGKYRSAGACTAAAFL 277
>d1opoa_ b.121.4.7 (A:) Carmovirus coat protein {CarMV (Carnation
mottle virus) [TaxId: 11986]}
Length = 267
Score = 30.3 bits (68), Expect = 0.23
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 56 IFLEYEPTSSSPTSSLFLVGKGVTYDTGG---ADIKISGNMAGMARDKCGAAVVAGFMKA 112
+F++Y S PT + + + G ++GN + G +
Sbjct: 150 LFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCIIVRGTV 209
Query: 113 VAML-QPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRF 163
+P + G V V E+V G+ +++T T AE
Sbjct: 210 EGGFTKPTLIGPGISGDVDYESARPIAVC-ELVTQMEGQILKITKTSAEQPL 260
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 27.6 bits (60), Expect = 1.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 5 KVEEYILETFKNTPSIKINIIKDPKILDK-EYPLFSAVNRAASVIDR 50
K+ E T +TP +++N I + +IL K E N + SV R
Sbjct: 2 KIYEDNSLTIGHTPLVRLNRIGNGRILAKVES-----RNPSFSVKCR 43
>d2fzcb1 d.58.2.1 (B:2-100) Aspartate carbamoyltransferase
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.7 bits (57), Expect = 3.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 18 PSIKINIIKDPKILDK 33
P +N I + +++ K
Sbjct: 78 PQATVNRIDNYEVVGK 93
>d1pg5b1 d.58.2.1 (B:11-104) Aspartate carbamoyltransferase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 94
Score = 25.0 bits (55), Expect = 4.8
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 18 PSIKINIIKDPKILDK 33
P+ INI+++ +++ K
Sbjct: 73 PTATINIVREYEVVKK 88
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 26.0 bits (56), Expect = 6.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 MAPPKVEEYILETFKNTPSIKINII 25
PK+ IL+ +TP ++IN I
Sbjct: 29 AKSPKILPDILKKIGDTPMVRINKI 53
>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
lobster (Panulirus interruptus) [TaxId: 6735]}
Length = 131
Score = 25.1 bits (55), Expect = 6.6
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 167 DVLAHMAEKAKDAVNPHLFTIA 188
A ++ +N F A
Sbjct: 93 YCFRSNAAYFRERMNEGEFVYA 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,270
Number of extensions: 45902
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 14
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)