Query psy6045
Match_columns 105
No_of_seqs 114 out of 212
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 01:07:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_r 60S ribosomal protein L 100.0 2.9E-57 1E-61 319.8 5.5 103 3-105 1-105 (105)
2 4a18_C 60S ribosomal protein L 100.0 1.2E-55 4.2E-60 313.3 2.6 99 3-101 1-99 (109)
3 1vq8_3 50S ribosomal protein L 100.0 6E-53 2.1E-57 292.2 3.2 91 4-95 1-92 (92)
4 3j21_j 50S ribosomal protein L 100.0 2.5E-52 8.5E-57 289.8 3.2 92 4-95 1-93 (94)
5 3v2d_6 50S ribosomal protein L 96.0 0.0016 5.6E-08 40.5 0.7 18 9-26 35-52 (54)
6 2zjr_1 50S ribosomal protein L 95.8 0.003 1E-07 39.3 1.4 18 9-26 36-53 (55)
7 2ftc_P Mitochondrial ribosomal 95.6 0.0041 1.4E-07 38.3 1.5 16 9-24 34-49 (52)
8 3bbo_3 Ribosomal protein L33; 95.6 0.0029 9.9E-08 40.9 0.7 15 10-24 48-62 (66)
9 3r8s_1 50S ribosomal protein L 95.6 0.0028 9.7E-08 38.8 0.6 16 9-24 32-47 (50)
10 1nkw_1 50S ribosomal protein L 95.1 0.0073 2.5E-07 40.7 1.5 18 9-26 63-80 (82)
11 2k3r_A Ribonuclease P protein 91.3 0.22 7.5E-06 34.7 4.0 27 69-95 87-119 (123)
12 2con_A RUH-035 protein, NIN on 84.9 0.49 1.7E-05 31.2 2.2 21 9-29 28-48 (79)
13 1x0t_A Ribonuclease P protein 71.2 6.1 0.00021 27.1 4.4 19 69-87 92-110 (120)
14 2kvh_A Zinc finger and BTB dom 47.1 6.6 0.00023 17.8 0.8 11 72-82 4-14 (27)
15 2kvg_A Zinc finger and BTB dom 47.1 7.1 0.00024 17.9 0.9 11 72-82 4-14 (27)
16 2kvf_A Zinc finger and BTB dom 45.8 7.1 0.00024 17.7 0.8 11 72-82 4-14 (28)
17 1rik_A E6APC1 peptide; E6-bind 44.8 7.5 0.00026 17.6 0.8 11 72-82 3-13 (29)
18 2lvu_A Zinc finger and BTB dom 50.5 4.7 0.00016 18.2 0.0 12 72-83 3-14 (26)
19 3h0g_L DNA-directed RNA polyme 44.1 5.3 0.00018 25.2 0.2 21 72-92 39-61 (63)
20 2m0f_A Zinc finger and BTB dom 44.0 7.8 0.00027 17.4 0.8 11 72-82 3-13 (29)
21 2zjr_Z 50S ribosomal protein L 42.2 6.3 0.00022 24.4 0.4 15 12-26 31-46 (60)
22 2m0d_A Zinc finger and BTB dom 40.3 9.6 0.00033 17.1 0.8 11 72-82 4-14 (30)
23 2elx_A Zinc finger protein 406 38.1 11 0.00037 17.9 0.8 12 72-83 8-19 (35)
24 2fa8_A Hypothetical protein AT 38.1 10 0.00035 25.8 0.9 17 1-18 3-19 (105)
25 2elm_A Zinc finger protein 406 38.0 11 0.00037 18.7 0.8 12 72-83 10-21 (37)
26 2lvt_A Zinc finger and BTB dom 43.9 6.9 0.00024 17.9 0.0 12 72-83 3-14 (29)
27 1znf_A 31ST zinc finger from X 37.4 7 0.00024 17.5 0.0 11 72-82 2-12 (27)
28 2m0e_A Zinc finger and BTB dom 36.7 6.6 0.00023 17.6 -0.2 11 72-82 3-13 (29)
29 1klr_A Zinc finger Y-chromosom 35.8 7 0.00024 17.6 -0.2 12 72-83 3-14 (30)
30 1ard_A Yeast transcription fac 35.4 7.9 0.00027 17.4 -0.0 11 72-82 3-13 (29)
31 3cng_A Nudix hydrolase; struct 34.8 12 0.00042 25.7 0.9 12 11-22 3-14 (189)
32 1srk_A Zinc finger protein ZFP 34.8 13 0.00045 17.7 0.8 11 72-82 8-18 (35)
33 1lv3_A Hypothetical protein YA 34.0 18 0.00061 23.2 1.5 19 2-22 2-20 (68)
34 2elq_A Zinc finger protein 406 33.9 14 0.00047 17.8 0.8 12 72-83 10-21 (36)
35 2lvr_A Zinc finger and BTB dom 39.8 8.8 0.0003 17.4 0.0 13 71-83 3-15 (30)
36 1fo5_A Thioredoxin; disulfide 33.5 15 0.0005 20.9 1.0 20 1-20 1-20 (85)
37 2elp_A Zinc finger protein 406 33.5 14 0.00049 17.9 0.8 12 72-83 10-21 (37)
38 2elv_A Zinc finger protein 406 33.2 14 0.00049 17.8 0.8 13 71-83 9-21 (36)
39 1paa_A Yeast transcription fac 32.9 7.9 0.00027 17.7 -0.3 11 72-82 3-13 (30)
40 4esj_A Type-2 restriction enzy 32.9 14 0.00049 29.1 1.1 24 10-33 33-56 (257)
41 2elo_A Zinc finger protein 406 32.4 12 0.0004 18.2 0.4 12 72-83 10-21 (37)
42 2els_A Zinc finger protein 406 31.9 15 0.00052 17.7 0.8 12 71-82 9-20 (36)
43 1fv5_A First zinc finger of U- 31.4 11 0.00039 20.2 0.2 12 72-83 9-20 (36)
44 2elt_A Zinc finger protein 406 31.4 16 0.00055 17.4 0.8 11 72-82 10-20 (36)
45 1wii_A Hypothetical UPF0222 pr 30.1 40 0.0014 22.1 2.8 23 4-28 18-40 (85)
46 3o9x_A Uncharacterized HTH-typ 29.4 27 0.00092 22.6 1.9 26 72-97 3-28 (133)
47 1rim_A E6APC2 peptide; E6-bind 29.4 10 0.00035 18.4 -0.2 11 72-82 3-13 (33)
48 1njq_A Superman protein; zinc- 29.3 18 0.00061 17.9 0.8 11 72-82 7-17 (39)
49 1p7a_A BF3, BKLF, kruppel-like 29.3 11 0.00039 18.2 -0.0 12 72-83 12-23 (37)
50 2kfq_A FP1; protein, de novo p 29.1 8 0.00027 18.6 -0.6 11 72-82 3-13 (32)
51 2epv_A Zinc finger protein 268 28.9 18 0.00063 18.4 0.8 12 72-83 13-24 (44)
52 1qyp_A RNA polymerase II; tran 28.4 29 0.001 20.3 1.7 13 69-81 41-53 (57)
53 2epc_A Zinc finger protein 32; 28.1 20 0.00067 17.8 0.8 12 72-83 12-23 (42)
54 2elr_A Zinc finger protein 406 27.3 13 0.00044 17.8 -0.0 11 72-82 10-20 (36)
55 3j20_Y 30S ribosomal protein S 26.9 20 0.00068 21.2 0.8 11 10-20 18-28 (50)
56 3a43_A HYPD, hydrogenase nicke 25.3 34 0.0012 23.7 1.9 14 12-25 108-121 (139)
57 3iuf_A Zinc finger protein UBI 25.2 23 0.00079 18.8 0.8 12 72-83 8-19 (48)
58 2en2_A B-cell lymphoma 6 prote 25.0 24 0.00081 17.5 0.8 11 72-82 12-22 (42)
59 2eox_A Zinc finger protein 473 24.6 26 0.0009 17.6 0.9 12 72-83 13-24 (44)
60 2emb_A Zinc finger protein 473 24.4 25 0.00084 17.7 0.8 12 72-83 13-24 (44)
61 2yu5_A Zinc finger protein 473 24.3 25 0.00086 17.7 0.8 12 72-83 13-24 (44)
62 2lq6_A Bromodomain-containing 23.6 28 0.00097 22.4 1.1 17 3-19 8-25 (87)
63 2el5_A Zinc finger protein 268 23.4 27 0.00092 17.3 0.8 12 72-83 11-22 (42)
64 3j21_g 50S ribosomal protein L 23.3 24 0.00081 21.3 0.6 20 73-96 30-49 (51)
65 2eoz_A Zinc finger protein 473 23.2 29 0.00099 17.7 0.9 12 72-83 13-24 (46)
66 2emi_A Zinc finger protein 484 22.9 28 0.00095 17.7 0.8 11 72-82 13-23 (46)
67 2ab3_A ZNF29; zinc finger prot 22.8 32 0.0011 15.1 1.0 11 72-82 3-15 (29)
68 2ytp_A Zinc finger protein 484 22.8 28 0.00096 17.8 0.8 11 72-82 13-23 (46)
69 2ept_A Zinc finger protein 32; 22.7 28 0.00097 17.2 0.8 13 71-83 10-22 (41)
70 2epu_A Zinc finger protein 32; 22.7 30 0.001 17.5 0.9 12 72-83 13-24 (45)
71 2k4x_A 30S ribosomal protein S 22.5 25 0.00085 21.1 0.6 12 10-21 17-28 (55)
72 1yui_A GAGA-factor; complex (D 22.4 28 0.00095 18.6 0.8 11 72-82 25-35 (54)
73 2em4_A Zinc finger protein 28 22.3 29 0.00099 17.7 0.8 12 72-83 13-24 (46)
74 2emj_A Zinc finger protein 28 21.9 30 0.001 17.6 0.8 12 72-83 13-24 (46)
75 2kdx_A HYPA, hydrogenase/ureas 21.6 49 0.0017 21.9 2.0 13 13-25 92-104 (119)
76 2yts_A Zinc finger protein 484 21.6 31 0.001 17.5 0.8 12 72-83 13-24 (46)
77 2eow_A Zinc finger protein 347 21.1 32 0.0011 17.4 0.8 11 72-82 13-23 (46)
78 2eoy_A Zinc finger protein 473 21.0 32 0.0011 17.5 0.8 11 72-82 13-23 (46)
79 2eoj_A Zinc finger protein 268 20.9 25 0.00086 17.6 0.4 12 72-83 13-24 (44)
80 2en3_A ZFP-95, zinc finger pro 20.9 32 0.0011 17.4 0.8 12 72-83 13-24 (46)
81 2e2z_A TIM15; protein import, 20.7 58 0.002 22.2 2.2 20 66-85 8-27 (100)
82 2eof_A Zinc finger protein 268 20.6 33 0.0011 17.1 0.8 12 72-83 13-24 (44)
83 2yrj_A Zinc finger protein 473 20.5 33 0.0011 17.3 0.8 12 72-83 13-24 (46)
84 2em3_A Zinc finger protein 28 20.3 34 0.0011 17.4 0.8 12 72-83 13-24 (46)
85 2eos_A B-cell lymphoma 6 prote 20.3 22 0.00074 17.8 0.0 12 72-83 12-23 (42)
86 2yto_A Zinc finger protein 484 20.2 34 0.0012 17.4 0.8 11 72-82 13-23 (46)
87 3ga8_A HTH-type transcriptiona 20.0 51 0.0017 20.2 1.7 26 72-97 3-28 (78)
No 1
>3iz5_r 60S ribosomal protein L42 (L44E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_r 2zkr_4 3izc_r 3izs_r 3o58_f 3o5h_f 3u5e_o 3u5i_o 4b6a_o 1s1i_Z 3j0o_F 3j0l_F 3jyw_Z
Probab=100.00 E-value=2.9e-57 Score=319.84 Aligned_cols=103 Identities=64% Similarity=1.124 Sum_probs=101.7
Q ss_pred ccccCceeeecC--cCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccc
Q psy6045 3 HVNVPKQRRTFC--KKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYR 80 (105)
Q Consensus 3 mm~iPK~~~tyC--p~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~ 80 (105)
|||||++++||| |+|++||+|+||||++|++|++|||+|||||+|+|||||++|||+++|||||||||+|+|++|+++
T Consensus 1 mvnvPK~~~tyC~~p~C~kHt~HkVtqyKkGK~s~~aqGkRrydRkq~GyGGq~kpi~~kkaK~TKKi~Lrl~C~~C~~~ 80 (105)
T 3iz5_r 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHY 80 (105)
T ss_dssp CCCCCSEEEECCCSTTTCSCEEEEEEECCCCCCSSTTHHHHHHHHTTTTCCCTTCCSCSCCCCCCEECCEEEEETTTSCC
T ss_pred CCCCCceeeeccCCCCCCCCccEEEEEeecccccchhhchhhHHhhcCccCCccCCcccCCCcccceEEEEEEecccCcc
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeeeeEeccceeccCcccC
Q psy6045 81 KQLPLKRCKHFELGGDKKRKVQTKI 105 (105)
Q Consensus 81 ~~~~~~R~KkfElg~~kk~~~~~~~ 105 (105)
+|++++||+|||||||+|++|++|.
T Consensus 81 ~~~~~kR~K~fElg~~kk~~~~~~~ 105 (105)
T 3iz5_r 81 SQHPIKRCKHFEIGGDKKGKGTSLF 105 (105)
T ss_dssp BCCCCCEESSCCCSSCCCCCCCCCC
T ss_pred cccccceeeEEEEcccccccCcccC
Confidence 9999999999999999999999984
No 2
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=100.00 E-value=1.2e-55 Score=313.27 Aligned_cols=99 Identities=60% Similarity=1.009 Sum_probs=96.5
Q ss_pred ccccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEeccccccce
Q psy6045 3 HVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQ 82 (105)
Q Consensus 3 mm~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~ 82 (105)
|||||++++||||+|++||+|+||||++|++|++|||+|||||+|+|||||++|||+++|||||||||+|+|++|++++|
T Consensus 1 mv~vPK~~~tyCpkC~kHt~HkVtqyKkGK~s~~aqGkRrydRkq~GyGGq~kpi~~~kaKtTKKivLrl~C~eC~~~~~ 80 (109)
T 4a18_C 1 MVQVPKTRKTYCKKCNSHTNHKVSQYKKSKESTHAQGRRRYDMKQSGFGGQTKPIFRKKAKTTKKVALKFDCTTCKTKRV 80 (109)
T ss_dssp -CEEESEEEEEETTTTEEEEEEEEECCCCCCCTTSHHHHHHHHHHSSSSSCCSCCCCCCCCSCCCCEEEEEETTTCCEEE
T ss_pred CCCCCcceeecCcCCCCCcceEEEEeecccccchhhchhhhhhhcCCcCCccCCcccCCCcccceEEEEEEecccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeeeeeEeccceeccC
Q psy6045 83 LPLKRCKHFELGGDKKRKV 101 (105)
Q Consensus 83 ~~~~R~KkfElg~~kk~~~ 101 (105)
++++||++||||+|+|++.
T Consensus 81 ~~~kR~K~fEl~~~kk~~~ 99 (109)
T 4a18_C 81 IPIKRCKTIVFMDITQIKK 99 (109)
T ss_dssp EECCCCSCCEEECHHHHHH
T ss_pred cccceeeeEEEccccchhh
Confidence 9999999999999998763
No 3
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=100.00 E-value=6e-53 Score=292.18 Aligned_cols=91 Identities=23% Similarity=0.394 Sum_probs=89.4
Q ss_pred cccCceeeecCcCCCCccceEEEEeecCccccccccceeeee-eccCCCCcccccccccccccceeEEEEEeccccccce
Q psy6045 4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDR-KQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQ 82 (105)
Q Consensus 4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~R-kq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~ 82 (105)
||||++++||||+|++||+|+||||++|++|++|||+||||| +|+||||||+|||++ |||||||||+|+|++|++++|
T Consensus 1 m~~PK~~~tyCp~C~kHt~HkVtqyKkGK~s~~aqG~Rry~r~kq~GygGq~kpv~~~-aK~TKKi~Lrl~C~~C~~~~~ 79 (92)
T 1vq8_3 1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGG-DKPTKKTDLKYRCGECGKAHL 79 (92)
T ss_dssp CEEESEEEEEETTTTEEEEEEEEECCCCCCCSCSHHHHHHHHHCCSSCCGGGGCCCCC-CCSSCBCCEEEEETTTCCEEC
T ss_pred CCCCccccccCCCCCCCccEEEEEEecCCcChhhhcchhhhhccccccCCcCCcccCC-CcccceEEEEEEecccChhhc
Confidence 899999999999999999999999999999999999999999 999999999999987 999999999999999999999
Q ss_pred ecceeeeeeEecc
Q psy6045 83 LPLKRCKHFELGG 95 (105)
Q Consensus 83 ~~~~R~KkfElg~ 95 (105)
++++||++|||+.
T Consensus 80 ~~~~R~k~fEl~e 92 (92)
T 1vq8_3 80 REGWRAGRLEFQE 92 (92)
T ss_dssp CCCCBCSCCEEEC
T ss_pred cccceeeEEEecC
Confidence 9999999999973
No 4
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-52 Score=289.78 Aligned_cols=92 Identities=40% Similarity=0.655 Sum_probs=90.8
Q ss_pred cccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccccee
Q psy6045 4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQL 83 (105)
Q Consensus 4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~ 83 (105)
||||++++||||+|++||+|+|+||++|++|++|||+|||||+|+||||||+|||+++|||||||||+|+|+||++++|+
T Consensus 1 M~vPK~~~tyC~~C~kHt~HkVt~yKkgK~s~~aqG~Rry~rkq~GygGq~kpv~~~~aK~TKKi~Lrl~C~eC~~~~~~ 80 (94)
T 3j21_j 1 MKYPKQIRTYCPFCKKHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVKKLDLRFRCTECGKAHTR 80 (94)
T ss_dssp CEECSEEEECCTTTTSCEEEEECCCCCCCCSSCSHHHHTTTTCCSSCCSTTSCCSCCCCCSSCBCCCCEEESSSCCEECC
T ss_pred CCCCceeeecCcCCCCCcceEEEEEecccccchhhcchhhhhhccccCCccccccccCccccceEEEEEEecccCcccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceeeeeeEecc
Q psy6045 84 P-LKRCKHFELGG 95 (105)
Q Consensus 84 ~-~~R~KkfElg~ 95 (105)
+ ++||++|||+.
T Consensus 81 ~~~~R~k~fEl~e 93 (94)
T 3j21_j 81 GRGFRVKKFELVE 93 (94)
T ss_dssp CCCCBCSCCEECC
T ss_pred ccCceeeeEEEec
Confidence 9 99999999975
No 5
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=95.99 E-value=0.0016 Score=40.51 Aligned_cols=18 Identities=33% Similarity=0.837 Sum_probs=15.3
Q ss_pred eeeecCcCCCCccceEEE
Q psy6045 9 QRRTFCKKCKIHKVHKVT 26 (105)
Q Consensus 9 ~~~tyCp~C~kHt~HkV~ 26 (105)
+.+-|||.|++||.|+=+
T Consensus 35 elkKycp~c~kHtlhkE~ 52 (54)
T 3v2d_6 35 ELRKYCPWCRKHTVHREV 52 (54)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEeeeCCCCCCEeeEEEe
Confidence 467899999999999843
No 6
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=95.82 E-value=0.003 Score=39.33 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.1
Q ss_pred eeeecCcCCCCccceEEE
Q psy6045 9 QRRTFCKKCKIHKVHKVT 26 (105)
Q Consensus 9 ~~~tyCp~C~kHt~HkV~ 26 (105)
+.+-|||.|++||.|+=+
T Consensus 36 elkKycp~~~kHtlhkE~ 53 (55)
T 2zjr_1 36 ELKKYDPVAKKHVVFREK 53 (55)
T ss_pred EEEccCCCCCCEEeEEEe
Confidence 367899999999999743
No 7
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=95.63 E-value=0.0041 Score=38.25 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=14.1
Q ss_pred eeeecCcCCCCccceE
Q psy6045 9 QRRTFCKKCKIHKVHK 24 (105)
Q Consensus 9 ~~~tyCp~C~kHt~Hk 24 (105)
+.+-|||.|++||.|+
T Consensus 34 elkKycp~~~khtlhk 49 (52)
T 2ftc_P 34 TLLHYDPVVKQRVLFV 49 (52)
T ss_pred EEEccCCCCCceEeEE
Confidence 3578999999999997
No 8
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.60 E-value=0.0029 Score=40.86 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=13.5
Q ss_pred eeecCcCCCCccceE
Q psy6045 10 RRTFCKKCKIHKVHK 24 (105)
Q Consensus 10 ~~tyCp~C~kHt~Hk 24 (105)
.+-|||+|++||.|+
T Consensus 48 lkKycp~c~kHtlhk 62 (66)
T 3bbo_3 48 LRKFCPYCYKHTIHG 62 (66)
T ss_dssp CCCCCCSSSSCCCCC
T ss_pred EEccCCCCCCeeeEE
Confidence 567999999999996
No 9
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=95.60 E-value=0.0028 Score=38.83 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=14.3
Q ss_pred eeeecCcCCCCccceE
Q psy6045 9 QRRTFCKKCKIHKVHK 24 (105)
Q Consensus 9 ~~~tyCp~C~kHt~Hk 24 (105)
+.+-|||.|++||.|+
T Consensus 32 elkKycp~~~khtlhk 47 (50)
T 3r8s_1 32 ELKKFDPVVRQHVIYK 47 (50)
T ss_dssp CEEEEETTTTEEEEEE
T ss_pred eEeeeCcCCCCEeeEE
Confidence 4678999999999997
No 10
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=95.11 E-value=0.0073 Score=40.68 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.1
Q ss_pred eeeecCcCCCCccceEEE
Q psy6045 9 QRRTFCKKCKIHKVHKVT 26 (105)
Q Consensus 9 ~~~tyCp~C~kHt~HkV~ 26 (105)
+.+-|||.|++||.|+=+
T Consensus 63 ELkKYcP~crKHtlHkEt 80 (82)
T 1nkw_1 63 ELKKYDPVAKKHVVFREK 80 (82)
T ss_pred EEEccCCCCCCeeeEEee
Confidence 357899999999999744
No 11
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=91.33 E-value=0.22 Score=34.75 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=13.9
Q ss_pred EEEEEeccccccceecc------eeeeeeEecc
Q psy6045 69 VLRMECTECKYRKQLPL------KRCKHFELGG 95 (105)
Q Consensus 69 ~Lrl~C~eC~~~~~~~~------~R~KkfElg~ 95 (105)
.|.++|..||...-.+. .|-.+.|.||
T Consensus 87 ~vv~tCl~Cg~~kR~p~~~~~~~~r~~~~~~~~ 119 (123)
T 2k3r_A 87 HIVVKCLECGHIMRYPYIKEIKKRRKEKMEYGG 119 (123)
T ss_dssp EEEEEETTTTEEEEEECCC--------------
T ss_pred EEEEECCCCCCEEEEecCccHHHHHHHhhhccC
Confidence 69999999998866555 4555666665
No 12
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=84.86 E-value=0.49 Score=31.22 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=17.7
Q ss_pred eeeecCcCCCCccceEEEEee
Q psy6045 9 QRRTFCKKCKIHKVHKVTQYK 29 (105)
Q Consensus 9 ~~~tyCp~C~kHt~HkV~qyK 29 (105)
.-+-|||+|+..|..+|+-+=
T Consensus 28 ~~k~FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 28 MNRVFCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SSCCSCSSSCCSCCEEEECBC
T ss_pred cccccccccCcccceEEEEEE
Confidence 346899999999999998754
No 13
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=71.16 E-value=6.1 Score=27.07 Aligned_cols=19 Identities=32% Similarity=0.703 Sum_probs=14.5
Q ss_pred EEEEEeccccccceeccee
Q psy6045 69 VLRMECTECKYRKQLPLKR 87 (105)
Q Consensus 69 ~Lrl~C~eC~~~~~~~~~R 87 (105)
.|.++|..||...-.+..+
T Consensus 92 ~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp EEEEEETTTCCEEEEECC-
T ss_pred EEEEECCCCCCEEEEccCc
Confidence 6999999999886655543
No 14
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=47.10 E-value=6.6 Score=17.79 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=9.2
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 78999998754
No 15
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=47.08 E-value=7.1 Score=17.91 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=9.2
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 78999998754
No 16
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.80 E-value=7.1 Score=17.69 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=9.2
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 78999998754
No 17
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=44.81 E-value=7.5 Score=17.59 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.1
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 78999998754
No 18
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=50.47 E-value=4.7 Score=18.19 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 789999987653
No 19
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.07 E-value=5.3 Score=25.24 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=13.3
Q ss_pred EEecccccccee--cceeeeeeE
Q psy6045 72 MECTECKYRKQL--PLKRCKHFE 92 (105)
Q Consensus 72 l~C~eC~~~~~~--~~~R~KkfE 92 (105)
++|.+||+.++. ...|.+.||
T Consensus 39 iRC~~CG~RILyK~Rt~r~~~~~ 61 (63)
T 3h0g_L 39 IRCRECGHRVMYKMRTKRMVQFE 61 (63)
T ss_dssp CCCSSSCCCCCBCCCCCCCEEEC
T ss_pred eECCCCCcEEEEEecCCceEEEE
Confidence 678888887773 235555554
No 20
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=44.02 E-value=7.8 Score=17.38 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.1
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 78999998754
No 21
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=42.20 E-value=6.3 Score=24.37 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=9.3
Q ss_pred ecCcCCCC-ccceEEE
Q psy6045 12 TFCKKCKI-HKVHKVT 26 (105)
Q Consensus 12 tyCp~C~k-Ht~HkV~ 26 (105)
..||.|+. +-+|.|.
T Consensus 31 ~~c~~cG~~~~pH~vc 46 (60)
T 2zjr_Z 31 TECPQCHGKKLSHHIC 46 (60)
T ss_dssp EECTTTCCEECTTBCC
T ss_pred eECCCCCCEeCCceEc
Confidence 35777777 5555553
No 22
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.33 E-value=9.6 Score=17.11 Aligned_cols=11 Identities=18% Similarity=0.473 Sum_probs=9.2
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 78999998754
No 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.11 E-value=11 Score=17.90 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 899999987553
No 24
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=38.10 E-value=10 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.798 Sum_probs=12.4
Q ss_pred CCccccCceeeecCcCCC
Q psy6045 1 MSHVNVPKQRRTFCKKCK 18 (105)
Q Consensus 1 ~~mm~iPK~~~tyCp~C~ 18 (105)
|+| +.|+..-.||..|+
T Consensus 3 m~~-~~~~V~I~YC~~C~ 19 (105)
T 2fa8_A 3 MTE-TKPRIAIRYCTQCN 19 (105)
T ss_dssp ----CCCEEEEEEETTTT
T ss_pred cCC-CCCEEEEEECCCCC
Confidence 344 47999999999998
No 25
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.03 E-value=11 Score=18.68 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=10.0
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elm_A 10 YYCSQCHYSSIT 21 (37)
T ss_dssp EECSSSSCEEEC
T ss_pred eECCCCCcccCC
Confidence 899999998653
No 26
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.90 E-value=6.9 Score=17.89 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 789999988654
No 27
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=37.36 E-value=7 Score=17.45 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=8.8
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67999998754
No 28
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.65 E-value=6.6 Score=17.56 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=8.9
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 67999998754
No 29
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.76 E-value=7 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.3
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 689999987643
No 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.45 E-value=7.9 Score=17.44 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=8.9
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 68999998754
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=34.83 E-value=12 Score=25.67 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.9
Q ss_pred eecCcCCCCccc
Q psy6045 11 RTFCKKCKIHKV 22 (105)
Q Consensus 11 ~tyCp~C~kHt~ 22 (105)
..|||.|+....
T Consensus 3 ~~~C~~CG~~~~ 14 (189)
T 3cng_A 3 MKFCSQCGGEVI 14 (189)
T ss_dssp CCBCTTTCCBCE
T ss_pred cccCchhCCccc
Confidence 469999998765
No 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=34.76 E-value=13 Score=17.72 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 89999998764
No 33
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=34.03 E-value=18 Score=23.15 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=12.1
Q ss_pred CccccCceeeecCcCCCCccc
Q psy6045 2 SHVNVPKQRRTFCKKCKIHKV 22 (105)
Q Consensus 2 ~mm~iPK~~~tyCp~C~kHt~ 22 (105)
+||+.+. ...||-|++..+
T Consensus 2 ~~m~~~~--~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 2 SHMSETI--TVNCPTCGKTVV 20 (68)
T ss_dssp --CCCCC--EEECTTTCCEEE
T ss_pred CCCCCCC--cCcCCCCCCccc
Confidence 6887653 357999998643
No 34
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=14 Score=17.83 Aligned_cols=12 Identities=25% Similarity=0.899 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elq_A 10 FKCSLCEYATRS 21 (36)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 899999987653
No 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.85 E-value=8.8 Score=17.41 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=10.1
Q ss_pred EEEecccccccee
Q psy6045 71 RMECTECKYRKQL 83 (105)
Q Consensus 71 rl~C~eC~~~~~~ 83 (105)
.|+|..|++....
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 3789999988653
No 36
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=33.50 E-value=15 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.1
Q ss_pred CCccccCceeeecCcCCCCc
Q psy6045 1 MSHVNVPKQRRTFCKKCKIH 20 (105)
Q Consensus 1 ~~mm~iPK~~~tyCp~C~kH 20 (105)
|+||.|=-...+.||.|..-
T Consensus 1 m~~~~vv~f~~~~C~~C~~~ 20 (85)
T 1fo5_A 1 MSKVKIELFTSPMCPHCPAA 20 (85)
T ss_dssp CCCEEEEEEECCCSSCCCTH
T ss_pred CCceEEEEEeCCCCCchHHH
Confidence 55665555667789999874
No 37
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.45 E-value=14 Score=17.91 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|.+|++....
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elp_A 10 MKCPYCDFYFMK 21 (37)
T ss_dssp EECSSSSCEECS
T ss_pred eECCCCChhhcc
Confidence 899999987654
No 38
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.23 E-value=14 Score=17.77 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.0
Q ss_pred EEEecccccccee
Q psy6045 71 RMECTECKYRKQL 83 (105)
Q Consensus 71 rl~C~eC~~~~~~ 83 (105)
.|+|..|++....
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3899999987553
No 39
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=32.89 E-value=7.9 Score=17.67 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=8.9
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 67999998754
No 40
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=32.87 E-value=14 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.542 Sum_probs=14.5
Q ss_pred eeecCcCCCCccceEEEEeecCcc
Q psy6045 10 RRTFCKKCKIHKVHKVTQYKKSKE 33 (105)
Q Consensus 10 ~~tyCp~C~kHt~HkV~qyKkGK~ 33 (105)
.+.|||.|+.-..+..+-.+...|
T Consensus 33 ~n~yCPnCG~~~l~~f~nN~PVaD 56 (257)
T 4esj_A 33 RQSYCPNCGNNPLNHFENNRPVAD 56 (257)
T ss_dssp HHCCCTTTCCSSCEEC----CCCE
T ss_pred HCCcCCCCCChhhhhccCCCcccc
Confidence 367999999977776665554433
No 41
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.43 E-value=12 Score=18.17 Aligned_cols=12 Identities=17% Similarity=0.395 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elo_A 10 YSCPVCEKSFSE 21 (37)
T ss_dssp CEETTTTEECSS
T ss_pred cCCCCCCCccCC
Confidence 899999987653
No 42
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.93 E-value=15 Score=17.65 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=9.7
Q ss_pred EEEeccccccce
Q psy6045 71 RMECTECKYRKQ 82 (105)
Q Consensus 71 rl~C~eC~~~~~ 82 (105)
.|+|..|++...
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2els_A 9 IFTCEYCNKVFK 20 (36)
T ss_dssp CEECTTTCCEES
T ss_pred CEECCCCCceeC
Confidence 389999998754
No 43
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=31.41 E-value=11 Score=20.20 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.0
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|+++...
T Consensus 9 ~~C~~CgK~F~~ 20 (36)
T 1fv5_A 9 FMCLPCGIAFSS 20 (36)
T ss_dssp CEETTTTEECSC
T ss_pred eECCCCCCccCC
Confidence 899999998653
No 44
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.39 E-value=16 Score=17.41 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=9.3
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|..|++...
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 89999998754
No 45
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.11 E-value=40 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.1
Q ss_pred cccCceeeecCcCCCCccceEEEEe
Q psy6045 4 VNVPKQRRTFCKKCKIHKVHKVTQY 28 (105)
Q Consensus 4 m~iPK~~~tyCp~C~kHt~HkV~qy 28 (105)
..+|+.+ -||+|+....=.|+.-
T Consensus 18 ~~L~t~F--~CPfCnh~~sV~vkid 40 (85)
T 1wii_A 18 GTLETQF--TCPFCNHEKSCDVKMD 40 (85)
T ss_dssp CCCSSCC--CCTTTCCSSCEEEEEE
T ss_pred CCCCCeE--cCCCCCCCCeEEEEEE
Confidence 3566544 5999998877777644
No 46
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.38 E-value=27 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEeccccccceecceeeeeeEeccce
Q psy6045 72 MECTECKYRKQLPLKRCKHFELGGDK 97 (105)
Q Consensus 72 l~C~eC~~~~~~~~~R~KkfElg~~k 97 (105)
+.|..||...+....+.-.|++.|..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~ 28 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRK 28 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEE
Confidence 46999999888777888888887754
No 47
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=29.35 E-value=10 Score=18.41 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.0
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 68999998754
No 48
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=29.33 E-value=18 Score=17.88 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=9.3
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 7 ~~C~~C~k~f~ 17 (39)
T 1njq_A 7 YTCSFCKREFR 17 (39)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 89999998754
No 49
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.28 E-value=11 Score=18.21 Aligned_cols=12 Identities=17% Similarity=0.620 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 789999987653
No 50
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=29.06 E-value=8 Score=18.62 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=8.9
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67999998755
No 51
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.88 E-value=18 Score=18.41 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (44)
T 2epv_A 13 YECNECGKAFIW 24 (44)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCc
Confidence 899999988553
No 52
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=28.37 E-value=29 Score=20.27 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.0
Q ss_pred EEEEEeccccccc
Q psy6045 69 VLRMECTECKYRK 81 (105)
Q Consensus 69 ~Lrl~C~eC~~~~ 81 (105)
.|-|.|+.||..+
T Consensus 41 T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 41 TIFYKCTKCGHTW 53 (57)
T ss_dssp EEEEEESSSCCEE
T ss_pred cEEEEcCCCCCEe
Confidence 5889999999864
No 53
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=28.05 E-value=20 Score=17.80 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2epc_A 12 YLCGQCGKSFTQ 23 (42)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 899999987653
No 54
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.34 E-value=13 Score=17.78 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=9.2
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 78999998765
No 55
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.88 E-value=20 Score=21.16 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=8.4
Q ss_pred eeecCcCCCCc
Q psy6045 10 RRTFCKKCKIH 20 (105)
Q Consensus 10 ~~tyCp~C~kH 20 (105)
.+.|||.|+.-
T Consensus 18 ~~k~CP~CG~~ 28 (50)
T 3j20_Y 18 KNKFCPRCGPG 28 (50)
T ss_dssp SSEECSSSCSS
T ss_pred ecccCCCCCCc
Confidence 46799999863
No 56
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.27 E-value=34 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.2
Q ss_pred ecCcCCCCccceEE
Q psy6045 12 TFCKKCKIHKVHKV 25 (105)
Q Consensus 12 tyCp~C~kHt~HkV 25 (105)
..||.|+.+..+-+
T Consensus 108 ~~CP~Cgs~~~~i~ 121 (139)
T 3a43_A 108 LACPKCGSHDFEVV 121 (139)
T ss_dssp CSCSSSSCCCEEEE
T ss_pred CcCccccCCccEEe
Confidence 45999999987744
No 57
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=25.16 E-value=23 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|..|++....
T Consensus 8 ~~C~~C~k~F~~ 19 (48)
T 3iuf_A 8 YACDICGKRYKN 19 (48)
T ss_dssp EECTTTCCEESS
T ss_pred EECCCcCcccCC
Confidence 899999987653
No 58
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.96 E-value=24 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2en2_A 12 YKCETCGARFV 22 (42)
T ss_dssp EECTTTCCEES
T ss_pred EeCCCcChhhC
Confidence 89999998755
No 59
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.62 E-value=26 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|.+|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (44)
T 2eox_A 13 YNCNECGKAFTR 24 (44)
T ss_dssp EEETTTTEEESS
T ss_pred eECcccCcccCC
Confidence 899999987553
No 60
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.42 E-value=25 Score=17.74 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2emb_A 13 YECSKCQATFNL 24 (44)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCCCCccCC
Confidence 899999987653
No 61
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.31 E-value=25 Score=17.70 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2yu5_A 13 FKCSKCDRVFTQ 24 (44)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCchhCC
Confidence 899999987653
No 62
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=23.60 E-value=28 Score=22.40 Aligned_cols=17 Identities=41% Similarity=0.888 Sum_probs=13.4
Q ss_pred ccccCcee-eecCcCCCC
Q psy6045 3 HVNVPKQR-RTFCKKCKI 19 (105)
Q Consensus 3 mm~iPK~~-~tyCp~C~k 19 (105)
-||||+.+ +--|-.|+.
T Consensus 8 ~~NIp~~R~~l~C~iC~~ 25 (87)
T 2lq6_A 8 HMNIPPARWKLTCYLCKQ 25 (87)
T ss_dssp -CCCCCCCCCCCBTTTTB
T ss_pred ccCCChHHhcCCCcCCCC
Confidence 48999987 677999974
No 63
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.36 E-value=27 Score=17.31 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|.+|++....
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2el5_A 11 YECSECGKAFNR 22 (42)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCcChhhCC
Confidence 899999987543
No 64
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.33 E-value=24 Score=21.30 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=11.0
Q ss_pred EeccccccceecceeeeeeEeccc
Q psy6045 73 ECTECKYRKQLPLKRCKHFELGGD 96 (105)
Q Consensus 73 ~C~eC~~~~~~~~~R~KkfElg~~ 96 (105)
.|..||+. ..|.|+-|+.+.
T Consensus 30 ~CrKCG~~----~lr~k~k~~~~~ 49 (51)
T 3j21_g 30 KCRKCGYK----RLRPKAKEPRGG 49 (51)
T ss_dssp SCSSSSSC----CCEEECCCCC--
T ss_pred ecCCCCCc----cccccccccccc
Confidence 46667766 445566666543
No 65
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=29 Score=17.70 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoz_A 13 YSCNVCGKAFVL 24 (46)
T ss_dssp EEETTTTEEESS
T ss_pred eECcccChhhCC
Confidence 899999987653
No 66
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.94 E-value=28 Score=17.71 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|..|++...
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emi_A 13 YECSECGKAFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred CCCCCCCcccC
Confidence 89999998754
No 67
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.79 E-value=32 Score=15.14 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=8.9
Q ss_pred EEec--cccccce
Q psy6045 72 MECT--ECKYRKQ 82 (105)
Q Consensus 72 l~C~--eC~~~~~ 82 (105)
|+|. +|++...
T Consensus 3 ~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 3 YVCHFENCGRSFN 15 (29)
T ss_dssp EEECSTTTCEEES
T ss_pred CCCcCCcCcCccC
Confidence 7899 9998754
No 68
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=28 Score=17.77 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|..|++...
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2ytp_A 13 YECSECGKAFA 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCcCCcccC
Confidence 89999998754
No 69
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.75 E-value=28 Score=17.20 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.1
Q ss_pred EEEecccccccee
Q psy6045 71 RMECTECKYRKQL 83 (105)
Q Consensus 71 rl~C~eC~~~~~~ 83 (105)
.|+|.+|++....
T Consensus 10 ~~~C~~C~k~f~~ 22 (41)
T 2ept_A 10 VYECQECGKSFRQ 22 (41)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCCcCC
Confidence 3899999987653
No 70
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.68 E-value=30 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (45)
T 2epu_A 13 FECTHCGKSFRA 24 (45)
T ss_dssp EEETTTTEEESS
T ss_pred ccCCCCCCccCC
Confidence 899999987543
No 71
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=22.52 E-value=25 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.4
Q ss_pred eeecCcCCCCcc
Q psy6045 10 RRTFCKKCKIHK 21 (105)
Q Consensus 10 ~~tyCp~C~kHt 21 (105)
.+.+||.|+.-.
T Consensus 17 ~~~fCPkCG~~~ 28 (55)
T 2k4x_A 17 KHRFCPRCGPGV 28 (55)
T ss_dssp SSCCCTTTTTTC
T ss_pred ccccCcCCCCce
Confidence 368999999754
No 72
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=22.44 E-value=28 Score=18.64 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|.+|++...
T Consensus 25 ~~C~~C~k~f~ 35 (54)
T 1yui_A 25 ATCPICYAVIR 35 (54)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 89999998754
No 73
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.32 E-value=29 Score=17.71 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em4_A 13 YECIECGKAFKT 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCCccCC
Confidence 899999987553
No 74
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.86 E-value=30 Score=17.64 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emj_A 13 FECAECGKSFSI 24 (46)
T ss_dssp EECSSSSCEESS
T ss_pred EECCCCCcccCC
Confidence 899999987553
No 75
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.58 E-value=49 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.3
Q ss_pred cCcCCCCccceEE
Q psy6045 13 FCKKCKIHKVHKV 25 (105)
Q Consensus 13 yCp~C~kHt~HkV 25 (105)
-||.|+.+..+-+
T Consensus 92 ~CP~Cgs~~~~i~ 104 (119)
T 2kdx_A 92 VCEKCHSKNVIIT 104 (119)
T ss_dssp CCSSSSSCCCEEE
T ss_pred cCccccCCCcEEe
Confidence 6999999876643
No 76
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.56 E-value=31 Score=17.46 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yts_A 13 YICNECGKSFIQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred EECCCCChhhCC
Confidence 899999987553
No 77
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=32 Score=17.40 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|..|++...
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eow_A 13 YKCNECGKAFR 23 (46)
T ss_dssp EECTTSCCEES
T ss_pred eeccccCChhc
Confidence 89999998754
No 78
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03 E-value=32 Score=17.53 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|.|..|++...
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoy_A 13 FKCNKCEKTFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECcCCCCcCC
Confidence 89999998755
No 79
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.94 E-value=25 Score=17.62 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=9.6
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eoj_A 13 YECCECGKVFSR 24 (44)
T ss_dssp CEETTTTEECSS
T ss_pred eeCCCCCCccCC
Confidence 899999987553
No 80
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.92 E-value=32 Score=17.44 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.9
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|..|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2en3_A 13 FQCKECGMNFSW 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCcccChhhCC
Confidence 899999988653
No 81
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=20.67 E-value=58 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.660 Sum_probs=15.0
Q ss_pred ceeEEEEEeccccccceecc
Q psy6045 66 KKIVLRMECTECKYRKQLPL 85 (105)
Q Consensus 66 KKi~Lrl~C~eC~~~~~~~~ 85 (105)
.+..|.|+|..|+....+.+
T Consensus 8 ~~~~l~FTC~~C~tRs~k~i 27 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSSHTM 27 (100)
T ss_dssp CEEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEEccCCCCcchhhc
Confidence 35789999999998665544
No 82
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.55 E-value=33 Score=17.08 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eof_A 13 YECNECQKAFNT 24 (44)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCCCcccCC
Confidence 899999987553
No 83
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.51 E-value=33 Score=17.31 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yrj_A 13 YRCGECGKAFAQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 899999988553
No 84
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.35 E-value=34 Score=17.36 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=9.8
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|.|..|++....
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2em3_A 13 YECKVCSKAFTQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 899999987553
No 85
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.34 E-value=22 Score=17.77 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=9.7
Q ss_pred EEecccccccee
Q psy6045 72 MECTECKYRKQL 83 (105)
Q Consensus 72 l~C~eC~~~~~~ 83 (105)
|+|.+|++....
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 789999987653
No 86
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.20 E-value=34 Score=17.41 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=9.4
Q ss_pred EEeccccccce
Q psy6045 72 MECTECKYRKQ 82 (105)
Q Consensus 72 l~C~eC~~~~~ 82 (105)
|+|..|++...
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yto_A 13 YKCSDCGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECcccCCccC
Confidence 89999998754
No 87
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.02 E-value=51 Score=20.22 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEeccccccceecceeeeeeEeccce
Q psy6045 72 MECTECKYRKQLPLKRCKHFELGGDK 97 (105)
Q Consensus 72 l~C~eC~~~~~~~~~R~KkfElg~~k 97 (105)
+.|..||...+....+-=.|+++|..
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~ 28 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRK 28 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEE
Confidence 46999999888878888888887653
Done!