RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6045
         (105 letters)



>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 92

 Score = 83.6 bits (207), Expect = 2e-23
 Identities = 19/89 (21%), Positives = 32/89 (35%)

Query: 5  NVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKT 64
           +P++  T+C  C  H+ H+V + +  ++       R+ +R                 K 
Sbjct: 2  QMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKP 61

Query: 65 TKKIVLRMECTECKYRKQLPLKRCKHFEL 93
          TKK  L+  C EC         R    E 
Sbjct: 62 TKKTDLKYRCGECGKAHLREGWRAGRLEF 90


>g1gg6.1 b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(ogen) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 238

 Score = 24.3 bits (51), Expect = 4.2
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 3   HVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQG 39
             ++P    T CKK    K+        +    +C G
Sbjct: 150 QASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMG 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,110
Number of extensions: 16122
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 15
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)