Psyllid ID: psy6046

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFMVSNV
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEcEEEcHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEEEccccccccHHHcccccccHHHHHHccccccccccccccccEEccccccccccEEEEccccEEEEcccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEccEccccHEEEEEEEcccccHHHHHHcccccHHHHHHHHHHHcccEccccccHHEEEcccccccccEEEEcccEEEEccccEEEEccccHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccHHHcccHHHHHHcHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHccccccccEEEEHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mitdpmashvggnrarsscsrkpekttkREVVQWKERNVSQGVVIVDEEQLLKLIkvepiekyysldpepllglnprppvyqasattkagsvlfpplMDFIFFflqpqnlvmmgdfpncdikvcdFEISRVILDGIEIrellgtpdyvgksLGVTAYVLLTgfspfggetdseTFRNISKAqldfpdelfedisPEAKDFIAKILIKNPMERMTAKealkhpwlmnkkqimtrvgcsscpsiiQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGrskeklygfkclSKSQEVLNLYKSMKDINNICIDEIIKNindnkgtwpshwvdlkrnfmvsnv
Flexible Loop (DISEMBL)
mitdpmashvggnrarsscsrkpekttkrevvqwkernvsqgvvivdeeqllKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIsasklqqenLRKSAllkynktrrlcesqmslvsktrekslGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNIndnkgtwpshwvdlkrnfmvsnv
Low Complexity Region (SEG)
MITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMkdinnicideiiknindnkGTWPSHWVDLKRNFMVSNV
Disordered region (IsUnstruct)
******************************VVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQ******************LF**V****************LKY****************************L**SKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFM****
Disordered Region (DISOPRED)
***DP**SHVGGNRARSSCSRKP******************GVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ*********************NLRKYLSKSREALFEKV**************************************************SKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFMVS**
Disordered Region (DISEMBL)
******************************VVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFMVSNV
Disordered Region (DISPRO)
MITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFMVSN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHWVDLKRNFMVSNV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q0KHT7	784	Probable serine/threonine	no	N/A	0.316	0.153	0.481	1e-29
Q9GM70	397	Serine/threonine-protein	yes	N/A	0.353	0.337	0.422	2e-28
Q9UEE5	414	Serine/threonine-protein	yes	N/A	0.353	0.323	0.416	9e-27
Q9UIK4	370	Death-associated protein	no	N/A	0.485	0.497	0.341	2e-25
Q8VDF3	370	Death-associated protein	yes	N/A	0.485	0.497	0.336	3e-25
Q91XS8	371	Serine/threonine-protein	yes	N/A	0.332	0.339	0.390	2e-24
Q8BG48	372	Serine/threonine-protein	no	N/A	0.332	0.338	0.390	2e-24
O94768	372	Serine/threonine-protein	no	N/A	0.332	0.338	0.390	8e-24
O43293	454	Death-associated protein	no	N/A	0.522	0.436	0.320	1e-23
Q80YE7	1442	Death-associated protein	no	N/A	0.358	0.094	0.357	4e-22

>sp|Q0KHT7|Y2666_DROME Probable serine/threonine-protein kinase CG32666 OS=Drosophila melanogaster GN=CG32666 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 83/135 (61%), Gaps = 15/135 (11%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+PQN+++ G+     +K+CDF ISRV+ +GI +RE+ GTPDYV                
Sbjct: 161 LKPQNILLAGERIEDGLKLCDFGISRVVCEGINVREMAGTPDYVAPEVLQYEPLSLLTDI 220

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV  YVLL+GFSPFGG+T  ETF NIS+  L FPD LF  +SP A DFI + L   P
Sbjct: 221 WSVGVLTYVLLSGFSPFGGDTKQETFLNISQCALTFPDNLFGGVSPVAIDFIRRALRIKP 280

Query: 210 MERMTAKEALKHPWL 224
            +RM A   L H WL
Sbjct: 281 NDRMNATGCLDHIWL 295

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9GM70|ST17A_RABIT Serine/threonine-protein kinase 17A OS=Oryctolagus cuniculus GN=STK17A PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 15/149 (10%)

Query: 91  SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK 150
            V F    D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV  
Sbjct: 156 GVHFLHTHDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIVKNSEELREIMGTPEYVAP 215

Query: 151 ---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP 195
                          S+GV  YV+LTG SPF G+   ETF NIS+  L + +E F+ +S 
Sbjct: 216 EILSYDPISMATDMWSIGVLTYVMLTGISPFLGDNKQETFLNISQMNLSYSEEEFDTVSE 275

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWL 224
            A DFI K+L+K P +R TA+E LKHPWL
Sbjct: 276 SAVDFIKKLLVKKPEDRATAEECLKHPWL 304

Acts as a positive regulator of apoptosis. May also act as a regulator of cellular reactive oxygen species.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UEE5|ST17A_HUMAN Serine/threonine-protein kinase 17A OS=Homo sapiens GN=STK17A PE=1 SV=2

 Score =  121 bits (304), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 15/149 (10%)

Query: 91  SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK 150
            V F    D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV  
Sbjct: 173 GVHFLHTRDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRILKNSEELREIMGTPEYVAP 232

Query: 151 ---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP 195
                          S+GV  YV+LTG SPF G    ETF NIS+  L + +E F+ +S 
Sbjct: 233 EILSYDPISMATDMWSIGVLTYVMLTGISPFLGNDKQETFLNISQMNLSYSEEEFDVLSE 292

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWL 224
            A DFI  +L+K P +R TA+E LKHPWL
Sbjct: 293 SAVDFIRTLLVKKPEDRATAEECLKHPWL 321

Acts as a positive regulator of apoptosis. Also acts as a regulator of cellular reactive oxygen species.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UIK4|DAPK2_HUMAN Death-associated protein kinase 2 OS=Homo sapiens GN=DAPK2 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 113/211 (53%), Gaps = 27/211 (12%)

Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 148 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 207

Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 208 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 267

Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N RK   + R  L 
Sbjct: 268 KETRKRLTIQEALRHPWITPVDNQQAMVR-----RESVV----NLENFRKQYVRRRWKLS 318

Query: 265 EKVISASKLQQENLRKSALLKYNKTRRLCES 295
             ++S       +L K   L+ ++  R CES
Sbjct: 319 FSIVSLCNHLTRSLMKKVHLRPDEDLRNCES 349

Isoform 2 can phosphorylate MYL9. It can induce membrane blebbing and autophagic cell death.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VDF3|DAPK2_MOUSE Death-associated protein kinase 2 OS=Mus musculus GN=Dapk2 PE=1 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 27/211 (12%)

Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 148 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 207

Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 208 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 267

Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N +K   + R  L 
Sbjct: 268 KETRKRLTIQEALRHPWITPVDTQQAMVR-----RESVV----NLENFKKQYVRRRWKLS 318

Query: 265 EKVISASKLQQENLRKSALLKYNKTRRLCES 295
             ++S       +L K   L+ ++  R CES
Sbjct: 319 FSIVSLCNHLTRSLMKKVHLRTSEDLRNCES 349

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Capable of regulating both type I apoptotic and type II autophagic cell deaths signal. The former involves caspase activation, chromatin and mitochondrial condensation while the latter involves caspase-independent cell death in conjunction with accumulation of mature autophagic vesicles, plasma membrane blebs, and nuclear condensation without DNA degradation. Mediator of anoikis and a suppressor of beta-catenin-dependent anchorage-independent growth of malignant epithelial cells. May play a role in granulocytic maturation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q91XS8|ST17B_RAT Serine/threonine-protein kinase 17B OS=Rattus norvegicus GN=Stk17b PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 15/141 (10%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           + +   L+PQN+++   +P  DIK+ DF +SR I +  E+RE++GTP+Y+          
Sbjct: 153 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGNASELREIMGTPEYLAPEILNYDPI 212

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E+F  +S  A DFI  
Sbjct: 213 TTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEEMFSSVSQLATDFIQS 272

Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+KNP +R TA+  L H WL
Sbjct: 273 LLVKNPEKRPTAESCLSHSWL 293

Acts as a positive regulator of apoptosis.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8BG48|ST17B_MOUSE Serine/threonine-protein kinase 17B OS=Mus musculus GN=Stk17b PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 15/141 (10%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           + +   L+PQN+++   +P  DIK+ DF +SR I +  E+RE++GTP+Y+          
Sbjct: 153 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGNASELREIMGTPEYLAPEILNYDPI 212

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E+F  +S  A DFI  
Sbjct: 213 TTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEEMFSSVSQLATDFIQS 272

Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+KNP +R TA+  L H WL
Sbjct: 273 LLVKNPEKRPTAESCLSHSWL 293

Acts as a positive regulator of apoptosis.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O94768|ST17B_HUMAN Serine/threonine-protein kinase 17B OS=Homo sapiens GN=STK17B PE=1 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 15/141 (10%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           + +   L+PQN+++   +P  DIK+ DF +SR I    E+RE++GTP+Y+          
Sbjct: 153 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPI 212

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E F  +S  A DFI  
Sbjct: 213 TTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQS 272

Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+KNP +R TA+  L H WL
Sbjct: 273 LLVKNPEKRPTAEICLSHSWL 293

Acts as a positive regulator of apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O43293|DAPK3_HUMAN Death-associated protein kinase 3 OS=Homo sapiens GN=DAPK3 PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 33/231 (14%)

Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + PN  IK+ DF I+  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLE 197

Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF GET  ET  NIS    DF +E F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLV 257

Query: 207 KNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL--- 263
           K+P  RMT  ++L+H W+   ++   R G  S     + +     L++Y  KS  +L   
Sbjct: 258 KDPKRRMTIAQSLEHSWIKAIRRRNVR-GEDSGRKPERRRLKTTRLKEYTIKSHSSLPPN 316

Query: 264 --------FEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREK 306
                   F KV+  +   +E LR     +  ++RRLC   +  ++   E+
Sbjct: 317 NSYADFERFSKVLEEAAAAEEGLR-----ELQRSRRLCHEDVEALAAIYEE 362

Isoform 2 can phosphorylate myosin, PPP1R12A and MYL12B.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 18/154 (11%)

Query: 98  MDFIFFFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------ 150
           +    F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V        
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYE 192

Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    S+GV  Y+LL+G SPF G+T  ET  N+S    DF +E F + S  AKDFI
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYDFEEEFFRNTSTLAKDFI 252

Query: 202 AKILIKNPMERMTAKEALKHPWLMNK--KQIMTR 233
            ++L+K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 253 RRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
328713083	654	PREDICTED: hypothetical protein LOC10016	0.625	0.362	0.466	1e-67
242005343	890	death associated protein kinase, putativ	0.633	0.269	0.468	1e-62
307190550	994	Serine/threonine-protein kinase 17A [Cam	0.451	0.172	0.540	2e-55
332025701	1224	Serine/threonine-protein kinase 17B [Acr	0.511	0.158	0.485	5e-54
156549437	1001	PREDICTED: hypothetical protein LOC10011	0.456	0.172	0.518	2e-53
350426312	1191	PREDICTED: hypothetical protein LOC10074	0.493	0.157	0.482	9e-53
340723642	1191	PREDICTED: hypothetical protein LOC10064	0.493	0.157	0.482	1e-52
383857725	1201	PREDICTED: uncharacterized protein LOC10	0.493	0.155	0.478	2e-52
380022614	1192	PREDICTED: uncharacterized protein LOC10	0.511	0.162	0.480	3e-52
328776543	1189	PREDICTED: hypothetical protein LOC72679	0.506	0.161	0.484	7e-52

>gi|328713083|ref|XP_001942546.2| PREDICTED: hypothetical protein LOC100163198, partial [Acyrthosiphon pisum]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 189/298 (63%), Gaps = 61/298 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++PQNLV+MG FP CD+K+CDFEISRVIL+G EIRE+LGTPDYV                
Sbjct: 119 IKPQNLVLMGVFPTCDVKLCDFEISRVILEGTEIREILGTPDYVAPEILHYEPITLAADM 178

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGVT Y LLTGFSPFGG+TD ETF NIS A +DFPDELFED+S EA DFI K+L+K+P
Sbjct: 179 WSLGVTTYALLTGFSPFGGDTDQETFCNISNADIDFPDELFEDVSEEAVDFIRKLLVKDP 238

Query: 210 MERMTAKEALKHPWLMNKKQ----------------------------------IMTRVG 235
            ER+TAKE LKHPWL N ++                                  ++ R G
Sbjct: 239 KERLTAKECLKHPWLANLRKSSSGSSHSVQHHQHLQQNYHQHQQPHQQQHQQPSVVKRTG 298

Query: 236 CSSC----PSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNK--T 289
           C++C    PSI   +        YLSKSREALFE+++S   +++ ++++S++L  ++  +
Sbjct: 299 CNTCAGITPSISARRSGGGLQPSYLSKSREALFERIVS-KHMRESDMKRSSMLHESQYAS 357

Query: 290 RRLCESQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNI 347
            R+CES  SLVS++R  +      +  +SKEKLYG K LS+SQ+VL++ KS+KD++ +
Sbjct: 358 SRMCESHTSLVSRSRNGTR-----TFSKSKEKLYGLKSLSRSQDVLDMCKSIKDLSEV 410

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005343|ref|XP_002423529.1| death associated protein kinase, putative [Pediculus humanus corporis] gi|212506643|gb|EEB10791.1| death associated protein kinase, putative [Pediculus humanus corporis]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 192/318 (60%), Gaps = 78/318 (24%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++PQN+VMM D+PNC+IK+CDFEISRVIL+G  IRELLGTPDYV                
Sbjct: 128 IKPQNIVMMSDYPNCEIKLCDFEISRVILEGKIIRELLGTPDYVAPEILHYDPITLAADM 187

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGVT YVLLTG+SPFGGETD ETF NIS+ +LDFPD+LF+D+S +A DFI K+++KNP
Sbjct: 188 WSLGVTTYVLLTGYSPFGGETDQETFCNISRGELDFPDDLFKDVSNDAVDFIKKLIVKNP 247

Query: 210 MERMTAKEALKHPWLMNK----------------KQIMTR---VGCSSCPSIIQNQQNKK 250
             R+TA   LKHPWL N                 ++++T+   VG     S ++ ++ K+
Sbjct: 248 KARLTASACLKHPWLNNSTDRNKMKESKNTLVKPERVVTQNDDVG-----SNLEEEKRKE 302

Query: 251 N-------------------LRKYLSKSREALFEKVISASKLQQENLRKSALLKYN---- 287
           N                   LRKYLSKSREALF+KV+        N   S   KY     
Sbjct: 303 NEYVDDGNRENDDNKNNNKKLRKYLSKSREALFDKVVQK---HNNNSTSSNFKKYTFKNH 359

Query: 288 --KTRRLCESQMSLVSKTREKSL---GDMAISLGRSKEKLYGFKCLSKSQEVLNLYK--- 339
             +  R+CESQ+SL+SK++EK L   G+   +  RS EKLYG + LSKSQEVLNLYK   
Sbjct: 360 RFRKTRMCESQISLISKSQEKLLLTGGETLNAPSRSIEKLYGLRSLSKSQEVLNLYKTGG 419

Query: 340 ---SMKDINNICIDEIIK 354
              S +++N   + EIIK
Sbjct: 420 LLTSQENLN--LVSEIIK 435

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190550|gb|EFN74537.1| Serine/threonine-protein kinase 17A [Camponotus floridanus]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/209 (54%), Positives = 142/209 (67%), Gaps = 38/209 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           LQPQNLVMMG FP+CD+K+CDFEISRVIL+G E+RE+LGTPDYV                
Sbjct: 1   LQPQNLVMMGSFPDCDVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPITLAADM 60

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGVT YVLLTGFSPFGGETD ETFRNIS  ++DFP+ELFEDIS +AKDF+AK+L+ +P
Sbjct: 61  WSLGVTTYVLLTGFSPFGGETDQETFRNISLGEVDFPEELFEDISAQAKDFVAKLLVLDP 120

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
             RMTAK+ L+H WL               P      Q   +LR+YLSKSRE L E+V+S
Sbjct: 121 SARMTAKQCLRHDWLR------------GAP-----MQASPHLRRYLSKSREVLLERVVS 163

Query: 270 ASKLQQENLRKSALLKYNKTR-RLCESQM 297
                +ENLR++AL+    ++  LC++ +
Sbjct: 164 -----RENLRRAALISQTTSQASLCQADL 187

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025701|gb|EGI65859.1| Serine/threonine-protein kinase 17B [Acromyrmex echinatior]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 151/235 (64%), Gaps = 41/235 (17%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP+CD+K+CDFEISRVIL+G E+RE+LGTPDYV          
Sbjct: 206 NIAHLDIKPQNLVMMGSFPDCDVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPI 265

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  SLGVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELFEDIS +AKDF+AK
Sbjct: 266 TLAADMWSLGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFEDISVQAKDFVAK 325

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL               P+     Q   +LR+YLSKSRE L
Sbjct: 326 LLVLDPSARMTAKQCLRHDWLR------------GAPT-----QASPHLRRYLSKSREVL 368

Query: 264 FEKVISASKLQQENLRKSALLKYNKTR-RLCESQMSL---VSKTREKSLGDMAIS 314
            E+V+S     +ENLR++AL+    ++  LC+  +       + R++ L D  +S
Sbjct: 369 LERVVS-----RENLRRAALISQTTSQASLCQGDVQSDQNYQQHRQQGLQDCTLS 418

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549437|ref|XP_001603222.1| PREDICTED: hypothetical protein LOC100119444 [Nasonia vitripennis]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 142/212 (66%), Gaps = 39/212 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++PQNLVMMG FP+C++K+CDFEISRV+L+G E+RE+LGTPDYV                
Sbjct: 215 IKPQNLVMMGSFPDCNVKLCDFEISRVVLEGTEVREILGTPDYVAPEILHYEPITLAADM 274

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGVT YVLLTGFSPFGGETD ETF+NI   Q+DFP+ELFED+S +AKDF+AK+L+  P
Sbjct: 275 WSLGVTTYVLLTGFSPFGGETDQETFKNIILGQVDFPEELFEDVSAQAKDFVAKLLVLEP 334

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
             RM+AK+ L+H WL               P+     Q   +LRKYLSKSRE L E+V+S
Sbjct: 335 SARMSAKQCLRHEWLRG------------APT-----QASAHLRKYLSKSREVLLERVVS 377

Query: 270 ASKLQQENLRKSALL--KYNKTRRLCESQMSL 299
                +ENLR++ALL   + +   L +S+M L
Sbjct: 378 -----RENLRRAALLNGHHQQAMDLSQSEMCL 404

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426312|ref|XP_003494400.1| PREDICTED: hypothetical protein LOC100745800 [Bombus impatiens]

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 146/230 (63%), Gaps = 43/230 (18%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP C++K+CDFEISRVIL+G E+RE+LGTPDYV          
Sbjct: 210 NIAHLDIKPQNLVMMGSFPECEVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPI 269

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELF DIS +AKDF+AK
Sbjct: 270 TLAADMWSVGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFGDISAQAKDFVAK 329

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL               P+     Q   +LR+YLSKSRE L
Sbjct: 330 LLVLDPSARMTAKQCLRHDWLR------------GAPT-----QASPHLRRYLSKSREVL 372

Query: 264 FEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAI 313
            E+V+S     +ENLR++ALL          SQ +L S  ++ +  D ++
Sbjct: 373 LERVVS-----RENLRRAALLSQ------ASSQANLSSDVQDSNHSDQSL 411

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723642|ref|XP_003400198.1| PREDICTED: hypothetical protein LOC100645687 [Bombus terrestris]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 146/230 (63%), Gaps = 43/230 (18%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP C++K+CDFEISRVIL+G E+RE+LGTPDYV          
Sbjct: 210 NIAHLDIKPQNLVMMGSFPECEVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPI 269

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELF DIS +AKDF+AK
Sbjct: 270 TLAADMWSVGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFGDISAQAKDFVAK 329

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL               P+     Q   +LR+YLSKSRE L
Sbjct: 330 LLVLDPSARMTAKQCLRHDWLR------------GAPT-----QASPHLRRYLSKSREVL 372

Query: 264 FEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAI 313
            E+V+S     +ENLR++ALL          SQ +L S  ++ +  D ++
Sbjct: 373 LERVVS-----RENLRRAALLSQ------ASSQANLSSDVQDANHSDQSL 411

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857725|ref|XP_003704354.1| PREDICTED: uncharacterized protein LOC100879681 [Megachile rotundata]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 146/230 (63%), Gaps = 43/230 (18%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP C++K+CDFEISRV+L+G E+RE+LGTPDYV          
Sbjct: 209 NIAHLDIKPQNLVMMGSFPECEVKLCDFEISRVVLEGTEVREILGTPDYVAPEILHYEPI 268

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  SLGVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELF D+S +AKDF+AK
Sbjct: 269 TLAADMWSLGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFGDVSAQAKDFVAK 328

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL             + P+     Q   +LR+YLSKSRE L
Sbjct: 329 LLVLDPSARMTAKQCLRHDWLR------------AAPT-----QASPHLRRYLSKSREVL 371

Query: 264 FEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAI 313
            E+V+      +ENLR++ALL          SQ +L S  +E +  D ++
Sbjct: 372 LERVVG-----RENLRRAALLSQ------ASSQANLSSDVQESNHRDQSL 410

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022614|ref|XP_003695135.1| PREDICTED: uncharacterized protein LOC100870315 [Apis florea]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 146/231 (63%), Gaps = 37/231 (16%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP C++K+CDFEISRVIL+G E+RE+LGTPDYV          
Sbjct: 210 NIAHLDIKPQNLVMMGTFPECEVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPI 269

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELF DIS +AKDF+A+
Sbjct: 270 TLAADMWSVGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFGDISAQAKDFVAR 329

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL               P+     Q   +LR+YLSKSRE L
Sbjct: 330 LLVLDPSARMTAKQCLRHDWLR------------GAPT-----QASPHLRRYLSKSREVL 372

Query: 264 FEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAIS 314
            E+V+S     +ENLR++ALL    ++    S     S   ++SL D  +S
Sbjct: 373 LERVVS-----RENLRRAALLSQASSQANLSSDAQESSNHPDQSLQDCLLS 418

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776543|ref|XP_001122511.2| PREDICTED: hypothetical protein LOC726790 [Apis mellifera]

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 149/233 (63%), Gaps = 41/233 (17%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           +     ++PQNLVMMG FP C++K+CDFEISRVIL+G E+RE+LGTPDYV          
Sbjct: 213 NIAHLDIKPQNLVMMGTFPECEVKLCDFEISRVILEGTEVREILGTPDYVAPEILHYEPI 272

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GVT YVLLTGFSPFGGETD ETF+NIS  ++DFP+ELF DIS +AKDF+A+
Sbjct: 273 TLAADMWSVGVTTYVLLTGFSPFGGETDQETFQNISLGEVDFPEELFGDISAQAKDFVAR 332

Query: 204 ILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           +L+ +P  RMTAK+ L+H WL               P+     Q   +LR+YLSKSRE L
Sbjct: 333 LLVLDPSARMTAKQCLRHDWLR------------GAPT-----QASPHLRRYLSKSREVL 375

Query: 264 FEKVISASKLQQENLRKSALLKYNKTRR--LCESQMSLVSKTREKSLGDMAIS 314
            E+V+S     +ENLR++ALL    ++    C+ Q S  S   ++SL D  +S
Sbjct: 376 LERVVS-----RENLRRAALLSQASSQANLSCDGQES--SSHPDQSLQDCLLS 421

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
UNIPROTKB|Q9GM70	397	STK17A "Serine/threonine-prote	0.332	0.317	0.432	1.4e-29
UNIPROTKB|F1PCL9	367	STK17A "Uncharacterized protei	0.332	0.343	0.425	1.2e-28
UNIPROTKB|Q9UEE5	414	STK17A "Serine/threonine-prote	0.332	0.304	0.425	6.6e-28
UNIPROTKB|F1NAF6	406	STK17A "Uncharacterized protei	0.511	0.477	0.321	1.4e-27
UNIPROTKB|F1MHX3	478	DAPK2 "Uncharacterized protein	0.414	0.328	0.367	2.4e-27
UNIPROTKB|G5E5A0	281	STK17A "Uncharacterized protei	0.350	0.473	0.425	6.6e-26
FB|FBgn0052666	784	Drak "Death-associated protein	0.316	0.153	0.481	1.4e-25
UNIPROTKB|J9P4D3	290	STK17A "Uncharacterized protei	0.332	0.434	0.425	1.4e-25
MGI|MGI:2138162	372	Stk17b "serine/threonine kinas	0.316	0.322	0.407	2.1e-25
UNIPROTKB|F1LS59	340	Dapk2 "Protein Dapk2" [Rattus	0.517	0.576	0.334	2.9e-25

UNIPROTKB|Q9GM70 STK17A "Serine/threonine-protein kinase 17A" [Oryctolagus cuniculus (taxid:9986)]

 Score = 301 (111.0 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 61/141 (43%), Positives = 88/141 (62%)

Query:    99 DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
             D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV          
Sbjct:   164 DVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIVKNSEELREIMGTPEYVAPEILSYDPI 223

Query:   151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                    S+GV  YV+LTG SPF G+   ETF NIS+  L + +E F+ +S  A DFI K
Sbjct:   224 SMATDMWSIGVLTYVMLTGISPFLGDNKQETFLNISQMNLSYSEEEFDTVSESAVDFIKK 283

Query:   204 ILIKNPMERMTAKEALKHPWL 224
             +L+K P +R TA+E LKHPWL
Sbjct:   284 LLVKKPEDRATAEECLKHPWL 304

GO:0005524 "ATP binding" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=ISS;IDA

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|F1PCL9 STK17A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 60/141 (42%), Positives = 87/141 (61%)

Query:    99 DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
             D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV          
Sbjct:   134 DVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKNSEELREIMGTPEYVAPEILSYDPI 193

Query:   151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                    S+GV  YV+LTG SPF G+   ETF NIS+  L + +E F+ +S  A DFI  
Sbjct:   194 SMATDMWSIGVLTYVMLTGISPFLGDNKQETFLNISQMSLSYSEEEFDVVSESAIDFIKT 253

Query:   204 ILIKNPMERMTAKEALKHPWL 224
             +L+K P +R TA+E LKHPWL
Sbjct:   254 LLVKKPEDRATAEECLKHPWL 274

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q9UEE5 STK17A "Serine/threonine-protein kinase 17A" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 60/141 (42%), Positives = 86/141 (60%)

Query:    99 DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
             D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV          
Sbjct:   181 DVVHLDLKPQNILLTSESPLGDIKIVDFGLSRILKNSEELREIMGTPEYVAPEILSYDPI 240

Query:   151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                    S+GV  YV+LTG SPF G    ETF NIS+  L + +E F+ +S  A DFI  
Sbjct:   241 SMATDMWSIGVLTYVMLTGISPFLGNDKQETFLNISQMNLSYSEEEFDVLSESAVDFIRT 300

Query:   204 ILIKNPMERMTAKEALKHPWL 224
             +L+K P +R TA+E LKHPWL
Sbjct:   301 LLVKKPEDRATAEECLKHPWL 321

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

UNIPROTKB|F1NAF6 STK17A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 71/221 (32%), Positives = 114/221 (51%)

Query:   105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
             L+PQN+++    P  DIK+ DF +SR++    E+RE++GTP+YV                
Sbjct:   176 LKPQNILLTSKSPLGDIKIVDFGLSRIVKSSEELREIMGTPEYVAPEILSYDPISTATDM 235

Query:   151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              S+GV AY++LTG SPF G+   ETF NIS+  + +  E F+ IS  A DF+  +L+K P
Sbjct:   236 WSIGVLAYIMLTGISPFLGDDKQETFLNISQMNVCYTGEDFDLISESAVDFMKTLLVKKP 295

Query:   210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
              ER TA+E L+HPWL    +   R    S       ++N       + K+ ++  EK + 
Sbjct:   296 EERATAEECLQHPWLEQSDEPTCRAWSKSA-----RRENSD----VIQKNADSASEKPVD 346

Query:   270 ASKLQQEN--LRKSALLKYNKTRRLCESQMSLVSKTREKSL 308
               K ++E   + +  ++  + T   C  Q      T +K++
Sbjct:   347 VEKAEEEESVITEELIVVASYTLGQCR-QSEKEKATEQKAI 386

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|F1MHX3 DAPK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 284 (105.0 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
 Identities = 65/177 (36%), Positives = 99/177 (55%)

Query:   103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
             F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct:   138 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 197

Query:   151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
                 S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct:   198 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 257

Query:   207 KNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
             K   +R+T +EAL+HPW+M+K +I       + P    NQ   K LR+Y  K   ++
Sbjct:   258 KETRKRLTIQEALRHPWIMSKGEIRAPEQHKAEP----NQLKTKRLREYTLKCHSSM 310

GO:0043276 "anoikis" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|G5E5A0 STK17A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 63/148 (42%), Positives = 89/148 (60%)

Query:    92 VLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK- 150
             V F    D +   L+PQN+++  + P  DIK+ DF +SR++    E+RE++GTP+YV   
Sbjct:    41 VCFLHAHDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKKSEELREIMGTPEYVAPE 100

Query:   151 --------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE 196
                           S+GV AYV+LTG SPF G+   ETF NIS+  L + +E F+ +S  
Sbjct:   101 VLSYDPISTATDMWSIGVLAYVMLTGISPFLGDDKQETFLNISQMNLSYSEEEFDVVSES 160

Query:   197 AKDFIAKILIKNPMERMTAKEALKHPWL 224
             A DFI  +L+K P +R TA+E LKHPWL
Sbjct:   161 AVDFIKTLLVKKPEDRATAEECLKHPWL 188

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

FB|FBgn0052666 Drak "Death-associated protein kinase related" [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 65/135 (48%), Positives = 83/135 (61%)

Query:   105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
             L+PQN+++ G+     +K+CDF ISRV+ +GI +RE+ GTPDYV                
Sbjct:   161 LKPQNILLAGERIEDGLKLCDFGISRVVCEGINVREMAGTPDYVAPEVLQYEPLSLLTDI 220

Query:   151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              S+GV  YVLL+GFSPFGG+T  ETF NIS+  L FPD LF  +SP A DFI + L   P
Sbjct:   221 WSVGVLTYVLLSGFSPFGGDTKQETFLNISQCALTFPDNLFGGVSPVAIDFIRRALRIKP 280

Query:   210 MERMTAKEALKHPWL 224
              +RM A   L H WL
Sbjct:   281 NDRMNATGCLDHIWL 295

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IMP;NAS

GO:0005575 "cellular_component" evidence=ND

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IGI

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|J9P4D3 STK17A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 60/141 (42%), Positives = 87/141 (61%)

Query:    99 DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
             D +   L+PQN+++  + P  DIK+ DF +SR++ +  E+RE++GTP+YV          
Sbjct:    90 DVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKNSEELREIMGTPEYVAPEILSYDPI 149

Query:   151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                    S+GV  YV+LTG SPF G+   ETF NIS+  L + +E F+ +S  A DFI  
Sbjct:   150 SMATDMWSIGVLTYVMLTGISPFLGDNKQETFLNISQMSLSYSEEEFDVVSESAIDFIKT 209

Query:   204 ILIKNPMERMTAKEALKHPWL 224
             +L+K P +R TA+E LKHPWL
Sbjct:   210 LLVKKPEDRATAEECLKHPWL 230

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:2138162 Stk17b "serine/threonine kinase 17b (apoptosis-inducing)" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 55/135 (40%), Positives = 84/135 (62%)

Query:   105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
             L+PQN+++   +P  DIK+ DF +SR I +  E+RE++GTP+Y+                
Sbjct:   159 LKPQNILLSSIYPLGDIKIVDFGMSRKIGNASELREIMGTPEYLAPEILNYDPITTATDM 218

Query:   151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E+F  +S  A DFI  +L+KNP
Sbjct:   219 WNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEEMFSSVSQLATDFIQSLLVKNP 278

Query:   210 MERMTAKEALKHPWL 224
              +R TA+  L H WL
Sbjct:   279 EKRPTAESCLSHSWL 293

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0012501 "programmed cell death" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=ISO

UNIPROTKB|F1LS59 Dapk2 "Protein Dapk2" [Rattus norvegicus (taxid:10116)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 75/224 (33%), Positives = 118/224 (52%)

Query:   103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
             F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct:   118 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 177

Query:   151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
                 S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct:   178 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 237

Query:   207 KNPMERMTAKEALKHPWLM--NKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
             K   +R+T +EAL+HPW+M  + +Q M R       S++    N +N +K   + R  L 
Sbjct:   238 KETRKRLTIQEALRHPWIMPVDNQQAMVRR-----ESVV----NLENFKKQYVRRRWKLS 288

Query:   265 EKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSL 308
               ++S       +L K   L+ ++  R CES     +  R K+L
Sbjct:   289 FSIVSLCNHLTRSLMKKVHLRTSEDLRNCESDTE-ENIARRKAL 331

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	379
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-27
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-21
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-18
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	4e-18
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-18
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-14
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	6e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-13
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-12
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-11
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-10
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-10
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	6e-10
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-10
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-09
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-09
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	7e-09
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	9e-09
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	1e-08
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-08
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	2e-08
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	3e-08
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	5e-08
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	9e-08
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	1e-07
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	1e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-07
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-07
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	1e-07
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-07
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	4e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-07
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-07
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	5e-07
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	9e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	9e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	9e-07
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	9e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-06
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	2e-06
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-06
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	4e-06
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-06
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	4e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-06
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	7e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	9e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	9e-06
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-05
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-05
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	1e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	1e-05
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-05
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	4e-05
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	5e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	5e-05
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	5e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	7e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	7e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	7e-05
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	8e-05
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-04
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	2e-04
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	2e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	3e-04
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	3e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	4e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	4e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-04
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	4e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	5e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	5e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	5e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	6e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	6e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	6e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	7e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.001
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	0.001
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	0.001
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.002
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	0.002
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.002
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.003
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.003
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.003
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.004
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.004
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  108 bits (273), Expect = 2e-27
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 20/136 (14%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+N+++  D     +K+ DF ++R +  G ++   +GTP+Y+      GK        
Sbjct: 123 LKPENILLDED---GHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDI 179

Query: 151 -SLGVTAYVLLTGFSPF-GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
            SLGV  Y LLTG  PF G +   E F+ I K +  FP     DISPEAKD I K+L+K+
Sbjct: 180 WSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPP-EWDISPEAKDLIRKLLVKD 238

Query: 209 PMERMTAKEALKHPWL 224
           P +R+TA+EAL+HP+ 
Sbjct: 239 PEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 23/140 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-ELLGTPDYV-----------GK-- 150
           L+P+N+++     N  +K+ DF +++ +L         +GTP Y+           G   
Sbjct: 124 LKPENILLD---ENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKV 180

Query: 151 ---SLGVTAYVLLTGFSPFGGETD---SETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
              SLGV  Y LLTG  PF GE      +  R I    L+F +  +   S EAKD I K 
Sbjct: 181 DVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKC 240

Query: 205 LIKNPMERMTAKEALKHPWL 224
           L K+P +R TA+E L+HPW 
Sbjct: 241 LNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 32/147 (21%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI---------RELLGTPDYV------- 148
           L+P N+++     N  +K+ DF +S+V L   +I         + ++GTPDY+       
Sbjct: 119 LKPDNILIDS---NGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILG 175

Query: 149 ---GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF 200
               K     SLG   Y  L G  PF GET  E F+NI   ++++P+    ++S EA D 
Sbjct: 176 QGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPE--DVEVSDEAIDL 233

Query: 201 IAKILIKNPMERMTAK---EALKHPWL 224
           I+K+L+ +P +R+ AK   E   HP+ 
Sbjct: 234 ISKLLVPDPEKRLGAKSIEEIKNHPFF 260

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 82.9 bits (205), Expect = 4e-18
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 24/140 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL++        +K+ DF +SR    G+E ++ +GTPDY+                
Sbjct: 123 IKPENLLIDQ---TGHLKLTDFGLSRN---GLENKKFVGTPDYLAPETILGVGDDKMSDW 176

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLG   +  L G+ PF  ET    F NI   ++++P+E+ E  SPEA D I ++L  +P
Sbjct: 177 WSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDP 236

Query: 210 MERMTAK---EALKHPWLMN 226
            +R+ A    E   HP+  +
Sbjct: 237 AKRLGANGYQEIKSHPFFKS 256

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 82.6 bits (205), Expect = 4e-18
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 23/122 (18%)

Query: 121 IKVCDFEISRVILDGIE-IRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF +++ +           GTP+Y+          GK     SLGV  Y +LTG  
Sbjct: 132 IKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP 191

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEA--LK-H 221
           PF  E   E +  I K  L FP    E +SPEA+D I+ +L K+P +R+ +  A  +K H
Sbjct: 192 PFYAEDRKEIYEKILKDPLRFP----EFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAH 247

Query: 222 PW 223
           P+
Sbjct: 248 PF 249

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 71.5 bits (176), Expect = 5e-14
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 23/100 (23%)

Query: 143 GTPDYV----------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD 187
           GT +YV          GK     +LG   Y +LTG  PF G  +  TF+ I K +  FP 
Sbjct: 184 GTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFP- 242

Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAK---EALK-HPW 223
               +  P+AKD I K+L+ +P +R+      + LK HP+
Sbjct: 243 ---PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPF 279

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 31/146 (21%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     N  +K+ DF  ++ +  G +     GTP+YV       K        
Sbjct: 119 LKPENLLLDS---NGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDY 175

Query: 151 -SLGVTAYVLLTGFSPFGGETDS--ETFRNISKA--QLDFPDELFEDISPEAKDFIAKIL 205
            SLG+  Y LLTG  PFG + +   E + +I K   +L+FP+     I   AKD I ++L
Sbjct: 176 WSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNY----IDKAAKDLIKQLL 231

Query: 206 IKNPMERM-----TAKEALKHPWLMN 226
            +NP ER+       K+  KH W   
Sbjct: 232 RRNPEERLGNLKGGIKDIKKHKWFNG 257

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---EIRELLGTPDY----------VGK- 150
           ++  N+++     +  +K+ DF  ++ + D         + GTP +           G+ 
Sbjct: 127 IKGANILV---DSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRA 183

Query: 151 ----SLGVTAYVLLTGFSPFG--GETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
               SLG T   + TG  P+   G   +  ++ I  +    P E+ E +S EAKDF+ K 
Sbjct: 184 ADIWSLGCTVIEMATGKPPWSELGNPMAALYK-IGSSGE--PPEIPEHLSEEAKDFLRKC 240

Query: 205 LIKNPMERMTAKEALKHPWL 224
           L ++P +R TA E L+HP+L
Sbjct: 241 LRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 21/99 (21%)

Query: 143 GTPDYV------GK---------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLDF 185
           GTPDY+      G          SLGV  Y +L GF PF  +T  ET+  I   K  L F
Sbjct: 192 GTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRF 251

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERMT-AKEALKHPW 223
           P +    +SPEA D I + L+ +P +R+   +E   HP+
Sbjct: 252 PPD--PPVSPEAIDLICR-LLCDPEDRLGSFEEIKSHPF 287

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 120 DIKVCDFEISRVILDGIEIRE-LLGTP-----------DYVGK----SLGVTAYVLLTGF 163
           D+K+ DF +S  +   +  R   +GTP            Y  K    SLG+TA  L  G 
Sbjct: 136 DVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGE 195

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFED-ISPEAKDFIAKILIKNPMERMTAKEALKHP 222
            P            I K   + P  L  +  S   KDF++  L K+P ER +AKE LKH 
Sbjct: 196 PPLSDLHPMRVLFLIPK---NNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHK 252

Query: 223 WLMNKK 228
           ++   K
Sbjct: 253 FIKKAK 258

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           +LG+  Y +L G +PF G    ETF NI K ++ FP      +S  A+D I K+L+K+P 
Sbjct: 217 TLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGS--PPVSSSARDLIRKLLVKDPS 274

Query: 211 ERM----TAKEALKHPW 223
           +R+     A E  +HP+
Sbjct: 275 KRLGSKRGAAEIKQHPF 291

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 25/137 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTP-----------DYVGK--- 150
           ++  N +++    + ++K+ DF +S  + D      ++GTP            Y  K   
Sbjct: 124 IKAAN-ILLTS--DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADI 180

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISK-AQLDFPDELFED--ISPEAKDFIAKILI 206
            SLG+TA  L  G  P+    +    + + K A    P  L      S E KDF+ K L 
Sbjct: 181 WSLGITAIELAEGKPPYS---ELPPMKALFKIATNGPP-GLRNPEKWSDEFKDFLKKCLQ 236

Query: 207 KNPMERMTAKEALKHPW 223
           KNP +R TA++ LKHP+
Sbjct: 237 KNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 121 IKVCDFEIS-RVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           +K+ DF ++ ++     +   ++GTP ++                 SLG T   LLTG  
Sbjct: 138 VKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNP 197

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           P+           I   Q D P  L E ISPE KDF+ +   K+P  R TAK+ LKHPW+
Sbjct: 198 PYYDLNPMAALFRI--VQDDHP-PLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 47/154 (30%)

Query: 118 NCDIKVCDFEISRVILDGIEIR---------------ELLGTPDYVGK-----SLGVTAY 157
           NCD+K+CDF ++R +    + +               ELL +     K     S+G    
Sbjct: 139 NCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFA 198

Query: 158 VLLTGFSPFGGET---------------DSETFRNISKAQ-----LDFP-------DELF 190
            LLT    F G                   E  + I+  +        P        +LF
Sbjct: 199 ELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLF 258

Query: 191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
              SPEA D + K+L+ +P +R+TA EAL HP+L
Sbjct: 259 PGASPEAIDLLEKMLVFDPKKRITADEALAHPYL 292

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 117 PNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLL 160
            N  +K+ DF +++ +++    +   G+P ++                  SLG T   + 
Sbjct: 137 TNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMA 196

Query: 161 TGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK 220
           TG  P+           I +++ + P  + + +S EAKDFI K L ++P  R TA E L+
Sbjct: 197 TGKPPWSQLEGVAAVFKIGRSK-ELP-PIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE 254

Query: 221 HPWL 224
           HP++
Sbjct: 255 HPFV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 32/138 (23%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           IK+ DF + +  IL G+      GTPDY+                 +LGV  Y +L G S
Sbjct: 135 IKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQS 194

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM----TAKEALK 220
           PF G+ + E F++I + ++ +P  L    S EAK  +   L KNP +R+    T ++ +K
Sbjct: 195 PFEGDDEDELFQSILEDEVRYPRWL----SKEAKSILKSFLTKNPEKRLGCLPTGEQDIK 250

Query: 221 -HP------W-LMNKKQI 230
            HP      W  + +K+I
Sbjct: 251 GHPFFREIDWDKLERKEI 268

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 59.0 bits (144), Expect = 7e-10
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 49/164 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQN+++  D     +K+ DF ++R    GI +R                LLG+  Y  
Sbjct: 124 LKPQNILINRD---GVLKLADFGLARAF--GIPLRTYTHEVVTLWYRAPEILLGSKHYST 178

Query: 150 K----SLGVTAYVLLTGFSPFGGET---------------DSETFRNISK---AQLDFP- 186
                S+G     ++TG   F G++                 E++  ++K    +  FP 
Sbjct: 179 AVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPK 238

Query: 187 ------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                 +++   + PE  D ++K+L  NP +R++AKEALKHP+ 
Sbjct: 239 FPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 42/155 (27%)

Query: 105 LQPQNLVM--MGDFPNCDIKVCDFEISRVIL-----------DGIEIRELL-----GTPD 146
           L+P NL++  MG      IK+ DF +S++ L              + RE L     GTP+
Sbjct: 127 LKPDNLLITSMGH-----IKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPE 181

Query: 147 YV----------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE 191
           Y+          GK     ++G+  Y  L G  PF G+T  E F  +    +++P+   E
Sbjct: 182 YIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGD-E 240

Query: 192 DISPEAKDFIAKILIKNPMERM---TAKEALKHPW 223
            +  +A+D I+++L +NP+ER+    A E  +H +
Sbjct: 241 ALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRF 275

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 30/130 (23%)

Query: 121 IKVCDFEISRVILDGIEIR--ELLGTPDYVGK-----------------SLGVTAYVLLT 161
           + + DF +S+  L   E R     GT +Y+                   SLGV  + LLT
Sbjct: 144 VVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLT 203

Query: 162 GFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---T 214
           G SPF       + SE  R I K++  FP    + +S EA+DFI K+L K+P +R+    
Sbjct: 204 GASPFTVDGEQNSQSEISRRILKSKPPFP----KTMSAEARDFIQKLLEKDPKKRLGANG 259

Query: 215 AKEALKHPWL 224
           A E   HP+ 
Sbjct: 260 ADEIKNHPFF 269

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 36/218 (16%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI-------LDGIEIRELLGTPDYVG- 149
              I   ++P+N+  + D     +K+ DF +++++                +GTP Y+  
Sbjct: 120 KGIIHRDIKPENI--LLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP 177

Query: 150 -----------------KSLGVTAYVLLTGFSPFGGETDSETFRNISK---------AQL 183
                             SLG+T Y LLTG  PF GE +S       K            
Sbjct: 178 EVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLAS 237

Query: 184 DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSII 243
                  E IS  A D + K+L K+P  R+++   L H  L + K   + +     P   
Sbjct: 238 PLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKPDDS 297

Query: 244 QNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKS 281
              +           S         S  KL   N  K 
Sbjct: 298 APLRLSLPPSLEALISSLNSLAISGSDLKLDDSNFSKE 335

Length = 384

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 120 DIKVCDFEISRVILDGIEIR-ELLGTPDYV------GK---------SLGVTAYVLLTGF 163
           ++K+ DF IS+V+ + ++     +GT  Y+      G+         SLG+T      G 
Sbjct: 138 EVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGK 197

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFED--ISPEAKDFIAKILIKNPMERMTAKEALKH 221
            PF       +F  + +A  D P         SPE +DFI+  L K+P +R +A E L+H
Sbjct: 198 FPFLP-PGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH 256

Query: 222 PWL 224
           P++
Sbjct: 257 PFI 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 33/141 (23%)

Query: 105 LQPQNLV--MMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GKS- 151
           L+P+NL+    G      IK+ DF  ++ +        L GTP+Y+          GK+ 
Sbjct: 127 LKPENLLLDSDGY-----IKITDFGFAKRVKGRT--YTLCGTPEYLAPEIILSKGYGKAV 179

Query: 152 ----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK 207
               LG+  Y +L G+ PF  +   + +  I + ++ FP       SP+AKD I  +L  
Sbjct: 180 DWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSF----FSPDAKDLIRNLLQV 235

Query: 208 NPMERM-----TAKEALKHPW 223
           +  +R+        +   HPW
Sbjct: 236 DLTKRLGNLKNGVNDIKNHPW 256

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 23/101 (22%)

Query: 143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLDF 185
           GTPDY+                 SLGV  Y +L G+ PF  +   ET+R I   K  L F
Sbjct: 201 GTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQF 260

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPW 223
           PDE+   +SPEAKD I ++       R+      E   HP+
Sbjct: 261 PDEV--PLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPF 298

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 28/147 (19%)

Query: 98  MDFIFFFLQPQNLVM--MGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----- 150
            + I+  L+P+N+++   G    CD  +C   +     D  +     GTP+Y+       
Sbjct: 112 FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK----DDDKTNTFCGTPEYLAPELLLG 167

Query: 151 ----------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF 200
                     +LGV  Y +LTG  PF  E  +E +R I +  L FPD        +AKD 
Sbjct: 168 HGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPD----GFDRDAKDL 223

Query: 201 IAKILIKNPMERM---TAKEALKHPWL 224
           +  +L ++P  R+    A+E   HP+ 
Sbjct: 224 LIGLLSRDPTRRLGYNGAQEIKNHPFF 250

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 34/160 (21%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELLGTPDYVGK------- 150
           D ++  L+P+N+++        I +CDF +S+  L D        GT +Y+         
Sbjct: 116 DIVYRDLKPENILLDA---TGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEK 172

Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    SLGV  + +  G+SPF  E   + +RNI+  ++ FP  +   +S E + F+
Sbjct: 173 GYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNV---LSDEGRQFV 229

Query: 202 AKILIKNPMERM----TAKEALKHPW-------LMNKKQI 230
             +L +NP  R+     A E  +HP+       L++KKQI
Sbjct: 230 KGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQI 269

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 27/107 (25%)

Query: 142 LGTPDYV----------GK----------SLGVTAYVLLTGFSPFGGETDSETFRNI--S 179
           +GTPDY+          GK          SLGV  Y +L G +PF  E+  ET+  I   
Sbjct: 164 VGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH 223

Query: 180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPW 223
           K    FP ++  D+S EAKD I + LI +P  R+     ++   HP+
Sbjct: 224 KEHFQFPPDV-TDVSEEAKDLIRR-LICSPETRLGRNGLQDFKDHPF 268

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 20/109 (18%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-----LGVTAYVLLTGFS 164
           IK+ DF + +  I  G   R   GTPDY+          GKS      GV  Y +L G  
Sbjct: 140 IKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQP 199

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           PF GE + E F++I +  + +P  L    S EA      +L K+P +R+
Sbjct: 200 PFDGEDEDELFQSIMEHNVSYPKSL----SKEAVSICKGLLTKHPAKRL 244

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)

Query: 101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISR-VILDGIEIRELLGTPDYV----------G 149
           I+  L+P+N+++        +K+ DF + +  I +G       GT +Y+          G
Sbjct: 122 IYRDLKPENILLDA---QGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHG 178

Query: 150 K-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
           K     SLG   Y +LTG  PF  E   +T   I K +L+ P  L    +PEA+D + K+
Sbjct: 179 KAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYL----TPEARDLLKKL 234

Query: 205 LIKNPMERM-----TAKEALKHPW 223
           L +NP  R+      A E   HP+
Sbjct: 235 LKRNPSSRLGAGPGDAAEVQSHPF 258

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 13/85 (15%)

Query: 151 SLGVTAYVLLTGFSPF--GGETDS--ETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
           S+GV  Y LLTG SPF   GE +S  E  R I K++  +P    +++S  AKD I ++L+
Sbjct: 193 SMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP----QEMSALAKDIIQRLLM 248

Query: 207 KNPMERM-----TAKEALKHPWLMN 226
           K+P +R+      A E  KHP+   
Sbjct: 249 KDPKKRLGCGPSDADEIKKHPFFQK 273

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 141 LLGTPDYV------GKS---------LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF 185
           +LGTPDY+      GK          LGV  +  LTG  PF  ET  + F+NI    + +
Sbjct: 540 ILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPW 599

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP 222
           P+   E +S  A++ I  +L  +P +R   KE  +HP
Sbjct: 600 PEGE-EKLSVNAQNAIEILLTMDPTKRAGLKELKQHP 635

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 20/109 (18%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKSL-----GVTAYVLLTGFS 164
           IK+ DF + +  + DG+  +   GTPDY+          GKS+     GV  Y +L G +
Sbjct: 140 IKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA 199

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           PF GE + E F++I +  + +P    + +S EA      ++ K+P +R+
Sbjct: 200 PFEGEDEDELFQSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRL 244

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 23/141 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI------------RELLGTPDYVGK-- 150
           ++P N+++ G   N  +K+CDF +S  ++  +              R   G P+      
Sbjct: 129 VKPTNVLVNG---NGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYT 185

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 SLG++   +  G  P+  ET +  F  +S      P  L    S +A+DF+AK 
Sbjct: 186 VQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKC 245

Query: 205 LIKNPMERMTAKEALKHPWLM 225
           L K P  R T  + L+HPWL+
Sbjct: 246 LNKIPNRRPTYAQLLEHPWLV 266

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 20/109 (18%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKSL-----GVTAYVLLTGFS 164
           IK+ DF + +  ++DG+  R   GTPDY+          GKS+     GV  Y +L G  
Sbjct: 140 IKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQP 199

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           PF GE + E F++I +  + +P  L    S EA      ++ K+P +R+
Sbjct: 200 PFDGEDEDELFQSIMEHNVSYPKSL----SKEAVSICKGLMTKHPSKRL 244

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 28/149 (18%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYVGKS------ 151
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 115 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND 171

Query: 152 ---------LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
                    LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 172 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 227

Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 228 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 256

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 28/138 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYVGKS------------ 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+               
Sbjct: 122 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVD 178

Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L    SPEAK  ++ +L K+
Sbjct: 179 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----SPEAKSLLSGLLKKD 234

Query: 209 PMERM-----TAKEALKH 221
           P +R+      AKE ++H
Sbjct: 235 PKQRLGGGPDDAKEIMQH 252

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 29/139 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++  +     IK+ DF  ++ + D      L GTP+Y+                
Sbjct: 127 LKPENILLDKE---GHIKLTDFGFAKKLRD--RTWTLCGTPEYLAPEVIQSKGHNKAVDW 181

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +LG+  Y +L G+ PF  +     +  I   +L+FP  L       AKD I K+L+ + 
Sbjct: 182 WALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHL----DLYAKDLIKKLLVVDR 237

Query: 210 MERM-----TAKEALKHPW 223
             R+      A +   H W
Sbjct: 238 TRRLGNMKNGADDVKNHRW 256

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 22/134 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI-RELLGTPDYV------GK------- 150
           ++PQN+ +  +     +K+ DF IS+V+   +++ + ++GTP Y+       K       
Sbjct: 129 IKPQNIFLTSNG---LVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSD 185

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y L T   PF GE   E    I K Q      +    S E ++ ++ +L K+
Sbjct: 186 IWSLGCVLYELCTLKHPFEGENLLELALKILKGQ---YPPIPSQYSSELRNLVSSLLQKD 242

Query: 209 PMERMTAKEALKHP 222
           P ER +  + L+ P
Sbjct: 243 PEERPSIAQILQSP 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 26/139 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+N ++        IK+ DF +S+ I+       ++G+PDY+      GK        
Sbjct: 127 LKPENFLIDAS---GHIKLTDFGLSKGIVT--YANSVVGSPDYMAPEVLRGKGYDFTVDY 181

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLDFP--DELFEDISPEAKDFIAKIL 205
            SLG   Y  L GF PF G T +ET+ N+   K  L  P  D+   ++S EA D I K L
Sbjct: 182 WSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITK-L 240

Query: 206 IKNPMERMTAKEALK-HPW 223
           I +P  R  + E +K HP+
Sbjct: 241 INDPSRRFGSLEDIKNHPF 259

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 121 IKVCDFEISRVILDGIEIRELLGT-----------PDYVGK----SLGVTAYVLLTGFSP 165
           IK+CDF +S  +++ +  +  +GT            DY  K    SLG++   L TG  P
Sbjct: 140 IKLCDFGVSGQLVNSLA-KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFP 198

Query: 166 FGGETDSET--FRNISKAQLDFPDELFEDI-SPEAKDFIAKILIKNPMERMTAKEALKHP 222
           +  E D     F  +     + P  L     SP+ +DF+   LIK+P ER + KE L+HP
Sbjct: 199 YPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHP 258

Query: 223 WLM 225
           ++ 
Sbjct: 259 FIK 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 60/173 (34%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKS--------LGVTA 156
           L+P N+++  D   C +K+ DF ++R + +  E  E     DYV           LG T 
Sbjct: 133 LKPSNILLNSD---CRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTR 189

Query: 157 YV--------------LLTG---F----------------------------SPFGGETD 171
           Y               +L G   F                            SPF     
Sbjct: 190 YTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFA---- 245

Query: 172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           +    ++        DEL    S +A D + K+L+ NP +R+TA+EAL+HP++
Sbjct: 246 ATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYV 298

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 53/167 (31%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-------------ELL-GTPDYVGK 150
           L+P NL++  D     +K+ DF ++R+  +                  ELL G   Y   
Sbjct: 125 LKPANLLISAD---GVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPG 181

Query: 151 ----SLGVTAYVLLTGFSPFGGETDSE-----------------------------TFRN 177
               ++G     LL G   F GE D E                             TF  
Sbjct: 182 VDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPE 241

Query: 178 ISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            SK      +E+F D SPEA D +  +L+ +P +R++A EAL+HP+ 
Sbjct: 242 -SKPIP--LEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 13/82 (15%)

Query: 151 SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
           SLG+  + LLTG SPF  E    T SE  R I K    FP      I PEA+D + K+L 
Sbjct: 192 SLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSF----IGPEAQDLLHKLLR 247

Query: 207 KNPMERM-----TAKEALKHPW 223
           K+P +R+      A E  +HP+
Sbjct: 248 KDPKKRLGAGPQGASEIKEHPF 269

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 29/130 (22%)

Query: 121 IKVCDFEISRVILD-----GIEIRELLGTPDY-----------VGK-------SLGVTAY 157
           IK+ DF  +  + +     G E++ L GTP Y            G        SLG    
Sbjct: 138 IKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVL 197

Query: 158 VLLTGFSPFGGETDSE---TFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT 214
            + TG  P+  E D+E    F   +  +   PD L   +SPE KDF+ + L  +P +R T
Sbjct: 198 EMATGKRPWS-ELDNEFQIMFHVGAGHKPPIPDSL--QLSPEGKDFLDRCLESDPKKRPT 254

Query: 215 AKEALKHPWL 224
           A E L+HP++
Sbjct: 255 ASELLQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 120 DIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------------SLGVTAYVLL 160
           ++K+CDF IS  ++D        G   Y+                     SLG++   L 
Sbjct: 153 NVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELA 212

Query: 161 TGFSPF-GGETDSETFRNISKAQLDFPD-ELFEDISPEAKDFIAKILIKNPMERMTAKEA 218
           TG  P+   +T+ E    I   Q + P     E  SP+   F+   L K+  +R   +E 
Sbjct: 213 TGQFPYKNCKTEFEVLTKI--LQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYREL 270

Query: 219 LKHPWLMNKKQIMTRV 234
           L+HP++   +     V
Sbjct: 271 LQHPFIRRYETAEVDV 286

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 23/102 (22%)

Query: 142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLD 184
           +GTPDY+                 SLG   +  L G+ PF  E   ET+R I   +  L 
Sbjct: 209 VGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLY 268

Query: 185 FPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPW 223
           FPD++   +S EA+D I + LI N   R+    A E   HP+
Sbjct: 269 FPDDI--HLSVEAEDLIRR-LITNAENRLGRGGAHEIKSHPF 307

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 48/164 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVI-------LDGIEIR-----ELLGTPDYVGK-- 150
           L+P+NL++        +K+ DF ++R            +  R     ELL          
Sbjct: 124 LKPENLLINT---EGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPV 180

Query: 151 ---SLGVTAYVLLTGFSPFGGETD----------------------SETFRNI-----SK 180
              S+G     LL+    F G+++                      +   RN       K
Sbjct: 181 DIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKK 240

Query: 181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           A +  P +LF + SP+A D ++++L  +P +R+TA++AL HP+ 
Sbjct: 241 AGMPLP-KLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 23/138 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N V++ D  N  I   D  ++  +  G +I+   GTP Y+                
Sbjct: 121 LKPEN-VLLDDHGNVRIS--DLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDW 177

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +LG T Y ++ G SPF    +      + +  L+   E  +  SPEAKD    +L K+P
Sbjct: 178 FALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDP 237

Query: 210 MERM-----TAKEALKHP 222
            +R+     +A E  +HP
Sbjct: 238 EKRLGCRGGSADEVREHP 255

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 33/138 (23%)

Query: 122 KVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSP 165
           K+ DF + +  I +G       GTPDY+                 ++GV  Y +L G +P
Sbjct: 136 KLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAP 195

Query: 166 FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA------KEAL 219
           F  E + + F  I   ++ +P  L +D    A D +   + KNP  R+ +      +  L
Sbjct: 196 FEAENEDDLFEAILNDEVVYPTWLSQD----AVDILKAFMTKNPTMRLGSLTLGGEEAIL 251

Query: 220 KHPW-------LMNKKQI 230
           +HP+        +N++QI
Sbjct: 252 RHPFFKELDWEKLNRRQI 269

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYVGKS---------------LGVTAYVLLTGFS 164
           IK+ DF + +  I DG  ++   GTP+Y+                  LGV  Y ++ G  
Sbjct: 134 IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 193

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF  +   + F  I   ++ FP  L    SPEAK  +A +L K+P +R+      AKE +
Sbjct: 194 PFYNQDHEKLFELILMEEIRFPRTL----SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIM 249

Query: 220 KHPW 223
           +H +
Sbjct: 250 EHRF 253

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 28/140 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELLGTPDYVGK------------- 150
           L+P+N+++  +     IK+ DF +S+  +D   +     GT +Y+               
Sbjct: 124 LKPENILLDEE---GHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSAD 180

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  + +LTG  PF G+   ET   I KA+L  P  L    SPEA+  +  +  +N
Sbjct: 181 WWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFL----SPEAQSLLRALFKRN 236

Query: 209 PMERMTA-----KEALKHPW 223
           P  R+ A     +E  +HP+
Sbjct: 237 PANRLGAGPDGVEEIKRHPF 256

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 10/53 (18%)

Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCP 240
           +L   ++PEA DF+ +IL  NPM+R+TA+EAL HP++           C SCP
Sbjct: 267 DLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYM----------SCYSCP 309

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 21/121 (17%)

Query: 121 IKVCDFEISR-VILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           IK+ DF + +  +L   +     GTPDY+                 S GV  Y +L G S
Sbjct: 135 IKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQS 194

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK-HPW 223
           PF G  + E F++I      +P  L    + EAKD + K+ ++ P  R+  K  ++ HP+
Sbjct: 195 PFHGHDEEELFQSIRMDNPCYPRWL----TREAKDILVKLFVREPERRLGVKGDIRQHPF 250

Query: 224 L 224
            
Sbjct: 251 F 251

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 28/128 (21%)

Query: 121 IKVCDF-EISRVILDGIEIREL-LGTPDYVGK---------------------SLGVTAY 157
           IK+ DF   +R+  + +   +L +GTPDY+                       SLGV AY
Sbjct: 141 IKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAY 200

Query: 158 VLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFIAKILIKNPMERMTA 215
            ++ G SPF   T ++T+ NI   Q  L FP++    +S +  D I   L+    ER+  
Sbjct: 201 EMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDP--KVSSDFLDLIQS-LLCGQKERLGY 257

Query: 216 KEALKHPW 223
           +    HP+
Sbjct: 258 EGLCCHPF 265

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 21/124 (16%)

Query: 119 CDIKVCDFEISRVILDGI-EIRELLGTP-----------DYVGK----SLGVTAYVLLTG 162
              K+ DF +S  + D + +   ++GTP            Y  K    SLG+TA  +  G
Sbjct: 136 GQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEG 195

Query: 163 FSPFGGETDSETFRNISKAQLDFPDELF--EDISPEAKDFIAKILIKNPMERMTAKEALK 220
             P+    D    R I       P  L   E  SPE  DF+ K L+K+P ER +A + L+
Sbjct: 196 KPPYS---DIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ 252

Query: 221 HPWL 224
           HP++
Sbjct: 253 HPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 21/122 (17%)

Query: 121 IKVCDFEISRVILDGIEIRE-LLGTPDYV-------GK---------SLGVTAYVLLTGF 163
           +K+CDF ++ ++      R   +GTP ++       GK         SLG+T Y + TG 
Sbjct: 140 VKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGN 199

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFED-ISPEAKDFIAKILIKNPMERMTAKEALKHP 222
            P+           I K++   P  L ++  S   ++F+A  L + P ER++A+E LK  
Sbjct: 200 PPYSDVDAFRAMMLIPKSK---PPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSK 256

Query: 223 WL 224
           W+
Sbjct: 257 WI 258

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 21/102 (20%)

Query: 142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLD 184
           +GTPDY+                 SLGV  Y +L G+ PF  ET  ET+R +   K  L 
Sbjct: 197 VGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLV 256

Query: 185 FPDELFEDISPEAKDFIAKILI--KNPMERMTAKEALKHPWL 224
           FP E+   IS +AKD I +     +N +     +E   HP+ 
Sbjct: 257 FPPEV--PISEKAKDLILRFCTDSENRIGSNGVEEIKSHPFF 296

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 139 RELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNI-----SKAQLDFPDELFEDI 193
           R+L    +YV + L +   VL +          S+  R        K  + +  ++F   
Sbjct: 209 RQLFPGKNYVHQ-LKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPW-SKIFPKA 266

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           SPEA D ++++L  +P ER+T ++AL+HP+L
Sbjct: 267 SPEALDLLSQMLQFDPEERITVEQALQHPFL 297

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 122 KVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPF 166
            + DF I+  +          GTP Y+                 SLGVTAY  L G  P+
Sbjct: 140 HITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPY 199

Query: 167 GGETDSETFRNISKAQLDFPDELF-EDISPEAKDFIAKILIKNPMERM--TAKEALKHPW 223
            G   S T R+  +A+ +  D L+    S EA D I K+L ++P +R+    K+   HP+
Sbjct: 200 RGH--SRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPY 257

Query: 224 L 224
            
Sbjct: 258 F 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN 226
           P   F   S E +DF+ K L KNP ER   KE  KHP++  
Sbjct: 255 PSGAF---SDEFQDFVDKCLKKNPKERADLKELTKHPFIKR 292

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 27/128 (21%)

Query: 120 DIKVCDFEISRVILDGIEIRE-----LLGTPDYVGK----------------SLGVTAYV 158
            +K+ DF +S  + DG +         +GTP ++                  S G+TA  
Sbjct: 140 SVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199

Query: 159 LLTGFSPFGGETDSETFRNISKAQLDFP----DELFEDISPEAKDFIAKILIKNPMERMT 214
           L TG +P+      +        Q D P       ++  S   +  I+  L K+P +R T
Sbjct: 200 LATGAAPYSKYPPMKVLMLT--LQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPT 257

Query: 215 AKEALKHP 222
           A+E LKH 
Sbjct: 258 AEELLKHK 265

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 24/130 (18%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------- 148
           D I+  L+P+NL++        +KV DF  ++ + D      L GTP+Y+          
Sbjct: 138 DIIYRDLKPENLLLDNK---GHVKVTDFGFAKKVPD--RTFTLCGTPEYLAPEVIQSKGH 192

Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     ++GV  Y  + G+ PF  +T    +  I   +L FP+         A+D +  
Sbjct: 193 GKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNW----FDGRARDLVKG 248

Query: 204 ILIKNPMERM 213
           +L  +  +R+
Sbjct: 249 LLQTDHTKRL 258

Length = 329

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 22/110 (20%)

Query: 121 IKVCDFEISR--VILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGF 163
           IK+ DF + +  +  +G +     GTPDY+                 S GV  Y +L G 
Sbjct: 135 IKIADFGMCKENMNGEG-KASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQ 193

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           SPF GE + E F +I   +  FP      IS EAKD ++K+  ++P +R+
Sbjct: 194 SPFHGEDEDELFDSILNDRPHFP----RWISKEAKDCLSKLFERDPTKRL 239

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 28/141 (19%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYVGKS------------ 151
           L+ +NL++  D     IK+ DF + +  I D   ++   GTP+Y+               
Sbjct: 121 LKLENLMLDKD---GHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVD 177

Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I    + FP  L    S +AK  ++ +LIK+
Sbjct: 178 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTL----SADAKSLLSGLLIKD 233

Query: 209 PMERM-----TAKEALKHPWL 224
           P +R+      AKE ++H + 
Sbjct: 234 PNKRLGGGPDDAKEIMRHSFF 254

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYVGK-------------------SLGVTAYVLLT 161
           +K+CDF IS  ++D +      G   Y+                     SLG+T   L T
Sbjct: 143 VKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELAT 202

Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFED-ISPEAKDFIAKILIKNPMERMTAKEALK 220
           G  P+  ++    F+ + +   +   +L  +  SPE +DF+ K L KN  ER    E L+
Sbjct: 203 GRFPY--DSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260

Query: 221 HP 222
           HP
Sbjct: 261 HP 262

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 21/123 (17%)

Query: 121 IKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           +K+ DF   +++  D  + + L+GTP ++                 SLG+    ++ G  
Sbjct: 156 VKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEP 215

Query: 165 PFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKNPMERMTAKEALKHP 222
           P+  ++  +  + +  +    P +L     ISP  +DF+ ++L + P ER TA+E L HP
Sbjct: 216 PYFSDSPVQAMKRLRDSP---PPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHP 272

Query: 223 WLM 225
           +L+
Sbjct: 273 FLL 275

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 19/79 (24%)

Query: 142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQLD 184
           +GTPDY+                 SLGV  Y +L G+ PF  ET  ET++ +   K  L 
Sbjct: 197 VGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLI 256

Query: 185 FPDELFEDISPEAKDFIAK 203
           FP E+   IS +AKD I +
Sbjct: 257 FPPEV--PISEKAKDLILR 273

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
              D+SPE  D + K+L  +P +R++AK AL HP+
Sbjct: 259 AVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 47/164 (28%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI-------------RELLGTPDYVGK- 150
           L+P NL++     NCD+K+CDF ++R   +  +                LL   +Y    
Sbjct: 134 LKPSNLLLNA---NCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAI 190

Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNI-------SKAQLDFPD------------- 187
              S+G     LL     F G+      + I       S+  L F               
Sbjct: 191 DVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPY 250

Query: 188 -------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                   LF   +P A D + K+L+ +P +R+T +EAL HP+L
Sbjct: 251 TPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYL 294

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 25/108 (23%)

Query: 142 LGTPDYV--------------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNI--SK 180
           +GTPDY+              G+     S+GV  Y +L G +PF  ++   T+  I   K
Sbjct: 204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHK 263

Query: 181 AQLDFPDELFEDISPEAKDFIAKILIKNP--MERMTAKEALKHPWLMN 226
             L FPD++  +IS +AKD I   L      + R    E   HP+  N
Sbjct: 264 NSLTFPDDI--EISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN 309

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           ++LF +  P+A D + K+L  NP +R+T +EAL HP+L
Sbjct: 258 NKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYL 295

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P +L     +SP  K F+ ++L+++
Sbjct: 201 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPKLKNLHKVSPSLKGFLDRLLVRD 257

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSC--PSIIQNQ 246
           P +R TA E LKHP+L        + G  SC  P + QN+
Sbjct: 258 PAQRATAAELLKHPFL-------AKAGPPSCIVPLMRQNR 290

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           SLG+    ++ G  P+  E   +  + I          L + +SP  + F+ ++L+++P 
Sbjct: 200 SLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHK-VSPRLRSFLDRMLVRDPA 258

Query: 211 ERMTAKEALKHPWLMN 226
           +R TA E L HP+L  
Sbjct: 259 QRATAAELLNHPFLAK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 30/146 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDF-EISRVILDG-IEIRELLGTPDYV----------GK-- 150
           ++P N++M  D  N  I++ DF    +++ DG ++    +GTPDY+          GK  
Sbjct: 128 IKPDNILM--DM-NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGK 184

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEAKDF 200
                   SLGV  Y +L G +PF  E+  ET+  I   K +  FP ++  D+S +AKD 
Sbjct: 185 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQV-TDVSEDAKDL 243

Query: 201 IAKILI--KNPMERMTAKEALKHPWL 224
           I +++   ++ + +   ++  +HP+ 
Sbjct: 244 IRRLICSREHRLGQNGIEDFKQHPFF 269

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 54/135 (40%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI-RELLGTPDYV------GK------- 150
           L+P+N+++  D  N  +K+ DF +S+++     + + ++GTP Y+      GK       
Sbjct: 118 LKPENILL--DSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKS 175

Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK 207
              SLGV  Y L                                   PE KD I K+L K
Sbjct: 176 DIWSLGVILYEL-----------------------------------PELKDLIRKMLQK 200

Query: 208 NPMERMTAKEALKHP 222
           +P +R +AKE L+H 
Sbjct: 201 DPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 52/165 (31%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISR----------------------------VILD-- 134
           L+P N+++     NCD+K+CDF ++R                            V +D  
Sbjct: 134 LKPSNILIN---ENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIW 190

Query: 135 --GIEIRELL-GTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNI-SKAQLDF----- 185
             G    E+L G P + GK   V  + ++T      G    +    I S+  L F     
Sbjct: 191 SAGCIFAEMLEGKPLFPGKD-HVNQFSIITDLL---GTPPDDVINTICSENTLRFVQSLP 246

Query: 186 -----P-DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                P  E F++  P A D + K+L+ +P +R++A EAL HP+L
Sbjct: 247 KREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYL 291

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
             +L  + SPEA D I  +L  +P +R TA +AL+HP+ 
Sbjct: 245 LHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           +I  E  D + K+L  NP +R++A EAL+HP+ 
Sbjct: 255 EICEEGLDLLKKMLTFNPHKRISAFEALQHPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           SPE KDF+ K L+K+P +R +A+E L+HP+L
Sbjct: 243 SPEFKDFLNKCLVKDPEKRPSAEELLQHPFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           IK+ DF + +  +          GTPDY+                 S GV  Y +L G S
Sbjct: 135 IKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQS 194

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK-HPW 223
           PF G+ + E F +I      +P      I+ E+KD + K+  ++P  R+     ++ HP+
Sbjct: 195 PFHGDDEDELFESIRVDTPHYP----RWITKESKDILEKLFERDPTRRLGVVGNIRGHPF 250

Query: 224 L 224
            
Sbjct: 251 F 251

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           +E F  + PE  D ++K+L  +P +R+TA +AL+HP+
Sbjct: 274 EERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 24/153 (15%)

Query: 98  MDFIFFFLQPQNLVM-------MGDFPNC------DIKVCDFEISRVILDGIEIRELLGT 144
           M FI   ++P N+++       + DF  C       +  CD  +        E+ +  G 
Sbjct: 161 MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGG 220

Query: 145 PDYVGK-----SLGVTAYVLLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEA 197
             Y G+     S+GV  Y +L G +PF  ++   T+  I   K  L FPD+   DIS EA
Sbjct: 221 DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD--NDISKEA 278

Query: 198 KDFIAKILIKNPME--RMTAKEALKHPWLMNKK 228
           K+ I   L    +   R   +E  +H +  N +
Sbjct: 279 KNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQ 311

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 23/103 (22%)

Query: 141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNIS--KAQL 183
           L+GTP+Y+                 S+GV  Y +L G  PF  +T +ET   +   +  L
Sbjct: 204 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTL 263

Query: 184 DFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPW 223
             P +    +S EA D I + L     +R+    A E   HP+
Sbjct: 264 HIPSQA--KLSREASDLILR-LCCGAEDRLGKNGADEIKAHPF 303

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSET-FRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
           SLG     +LTG  PF   T  +  F+    A  + P     +IS EA DF+ K    + 
Sbjct: 197 SLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPS----NISSEAIDFLEKTFEIDH 252

Query: 210 MERMTAKEALKHPWL 224
            +R TA E LKHP+L
Sbjct: 253 NKRPTAAELLKHPFL 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 28/125 (22%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDF-EISRVILDG-IEIRELLGTPDYV------------GK 150
           ++P N+++  D  N  I++ DF    ++  DG ++    +GTPDY+            GK
Sbjct: 128 IKPDNVLL--DM-NGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGK 184

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEAKDF 200
                   SLGV  Y +L G +PF  E+  ET+  I   + +  FP  +  D+S EAKD 
Sbjct: 185 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHI-TDVSEEAKDL 243

Query: 201 IAKIL 205
           I +++
Sbjct: 244 IQRLI 248

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 21/92 (22%)

Query: 137 EIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP----DELFED 192
            I  L+GTPD                      +  SE+ RN  ++    P     E+F  
Sbjct: 227 RIMNLVGTPD-----------------EELLQKISSESARNYIQSLPQMPKKDFKEVFSG 269

Query: 193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            +P A D + K+L+ +P +R+TA EAL HP+L
Sbjct: 270 ANPLAIDLLEKMLVLDPDKRITAAEALAHPYL 301

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 39/238 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI---RELLGTPDYVGK----------- 150
           L+  N+ +M   P   IK+ DF  S+   D + +       GTP Y+             
Sbjct: 195 LKSANIFLM---PTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKK 251

Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-FPDELFEDISPEAKDFIAKIL 205
               SLGV  Y LLT   PF G +  E  + +   + D FP      +S   K  +  +L
Sbjct: 252 ADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPC----PVSSGMKALLDPLL 307

Query: 206 IKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFE 265
            KNP  R T ++ L   +L     +   +   S    I     ++ LR+       A   
Sbjct: 308 SKNPALRPTTQQLLHTEFLKYVANLFQDIVRHS--ETISPHDREEILRQLQESGERAPPP 365

Query: 266 KVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGD--MAISLGRSKEK 321
             I    +  +      L KY+   R          K R   +G+  + ISL  + E 
Sbjct: 366 SSIRYGVVTSDVTHGGYLYKYSSDMRW---------KKRYFYIGNGQLRISLSENPEN 414

Length = 478

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 8/48 (16%)

Query: 185 FPDELFEDISPE--------AKDFIAKILIKNPMERMTAKEALKHPWL 224
           FPD LF   S          A+D ++K+L+ +P +R++  +AL+HP++
Sbjct: 267 FPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYI 314

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++        I++ D  ++  + +G  I+  +GT  Y+                
Sbjct: 128 LKPENILLDDH---GHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDW 184

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +LG   Y ++ G SPF           + +   +  +E  E  SP+A+     +L K+P
Sbjct: 185 WALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDP 244

Query: 210 MERM-----TAKEALKHP 222
            ER+      A+E  +HP
Sbjct: 245 KERLGCQGGGAREVKEHP 262

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK 227
            ++F   S +A D + ++L  NP +R+TA++AL+HP+  N 
Sbjct: 248 KQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSND 288

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT-----------------PDY 147
           L+P+N+ ++ D+ +  I++ D  ++  I +G  IR  +GT                 PD+
Sbjct: 128 LKPENI-LLDDYGH--IRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDW 184

Query: 148 VGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK 207
            G  LG   Y ++ G SPF    +      + +   +  +E  E  S  A+    ++L K
Sbjct: 185 WG--LGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTK 242

Query: 208 NPMERM-----TAKEALKHPWL--MNKKQI 230
           +P  R+      A+E   HP+    N K++
Sbjct: 243 DPGFRLGCRGEGAEEVKAHPFFRTANFKRL 272

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 120 DIKVCDFEISRVILDGIEIRE-LLGTP--------------DYVGK----SLGVTAYVLL 160
           D+K+ DF +S  +   I  R+  +GTP               Y GK    +LG+TA  L 
Sbjct: 139 DVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELA 198

Query: 161 TGFSPFGGETDSETFRNISKAQLDFP---DELFEDISPEAKDFIAKILIKNPMERMTAKE 217
               P            ISK+    P   D+  E  SP   DFI K L K+P +R TA +
Sbjct: 199 ELQPPMFDLHPMRALFLISKSNFPPPKLKDK--EKWSPVFHDFIKKCLTKDPKKRPTATK 256

Query: 218 ALKHP 222
            L+HP
Sbjct: 257 LLQHP 261

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 20/100 (20%)

Query: 139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL 183
           R   GTP YV                 SLGV  Y LLT   PF GE   E        + 
Sbjct: 203 RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRY 262

Query: 184 D-FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP 222
           D  P      ISPE ++ +  +L  +P  R ++ + L  P
Sbjct: 263 DPLPPS----ISPEMQEIVTALLSSDPKRRPSSSKLLNMP 298

Length = 496

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 27/144 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT-----------------PDY 147
           L+P+N +++ D+ +  I++ D  ++  I +G  IR  +GT                 PDY
Sbjct: 128 LKPEN-ILLDDYGH--IRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDY 184

Query: 148 VGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK 207
            G  LG   Y ++ G SPF G  +      + +  L+  +      S EAK     +L K
Sbjct: 185 WG--LGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTK 242

Query: 208 NPMERMTAK-----EALKHPWLMN 226
           +P +R+  +     E  +HP+  N
Sbjct: 243 DPKQRLGCQEEGAGEVKRHPFFRN 266

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 17/90 (18%)

Query: 152 LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPME 211
           LGV  Y +L G SPF G+ + E F +I   ++ +P  L    S EA   + ++L +NP  
Sbjct: 187 LGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFL----SREAISIMRRLLRRNPER 242

Query: 212 RM-----TAKEALKHP--------WLMNKK 228
           R+      A++  K P         L+ +K
Sbjct: 243 RLGSGEKDAEDVKKQPFFRDINWDDLLARK 272

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 59/169 (34%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++        IK+ DF ++R    GI +R                LLG+P Y  
Sbjct: 127 LKPQNLLIDN---KGVIKLADFGLARAF--GIPVRVYTHEVVTLWYRAPEVLLGSPRY-- 179

Query: 150 KSLGVTAYVLLTGFSP-------FGGETDSE------TFRNISKAQLD------------ 184
            S  V  + + T F+        F G  DSE       FR +     D            
Sbjct: 180 -STPVDIWSIGTIFAEMATKKPLFHG--DSEIDQLFRIFRILGTPTEDVWPGVTSLPDYK 236

Query: 185 --FP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
             FP           +++  +  D + K+LI +P +R++AK+AL HP+ 
Sbjct: 237 NTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           E F  I   A D +  +L  +P +R TA+EAL  PWL
Sbjct: 266 EEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 49/163 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++       ++K+ DF ++R    GI +                 LLG+  Y  
Sbjct: 126 LKPQNLLINKR---GELKLADFGLARAF--GIPVNTFSNEVVTLWYRAPDVLLGSRTYST 180

Query: 150 K----SLGVTAYVLLTGFSPFGGETDSE---------------TFRNISKA---QLDFP- 186
                S+G     ++TG   F G  + +               T+  IS+    +  FP 
Sbjct: 181 SIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPR 240

Query: 187 ------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                  +LF    P   D + ++L  NP  R++A +AL+HPW
Sbjct: 241 YPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMN---KKQIMT 232
           S    DF+   L+K+P +R TA E LKHP++ +    K I  
Sbjct: 235 SSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQSDNKAIKD 276

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 42/161 (26%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT---------PDYV-GKSLGV 154
           ++P N+++        +K+CDF +S     G  +  L GT         P+ + GK   +
Sbjct: 131 IKPSNILLT---RKGQVKLCDFGVS-----GELVNSLAGTFTGTSFYMAPERIQGKPYSI 182

Query: 155 TAYVLLTGFS---------PFGGETDS--------ETFRNISKAQLDFPDELFEDI--SP 195
           T+ V   G +         PF  E +             N+   +L   DE    I  S 
Sbjct: 183 TSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPEL--KDEPGNGIKWSE 240

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWL---MNKKQIMTR 233
           E KDFI + L K+P  R T  + L+HPW+   M KK  M +
Sbjct: 241 EFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQMKKKVNMAK 281

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF 185
           L+GTP+Y+                 S+GV  Y +L G  PF  +T  ET   +   Q   
Sbjct: 208 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSL 267

Query: 186 PDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPWL 224
                  +SPEA D I K L + P +R+    A E   HP+ 
Sbjct: 268 HIPPQAKLSPEASDLIIK-LCRGPEDRLGKNGADEIKAHPFF 308

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 48/169 (28%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           D I   L+P NL +  D   C++K+ DF ++R   D  E+   + T  Y           
Sbjct: 140 DIIHRDLKPSNLAVNED---CELKILDFGLARHTDD--EMTGYVATRWYRAPEIMLNWMH 194

Query: 151 --------SLGVTAYVLLTGFSPFGG-----------------------ETDSETFRNIS 179
                   S+G     LLTG + F G                       +  SE+ RN  
Sbjct: 195 YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYI 254

Query: 180 KAQLDFPDELFEDI----SPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           ++    P   F ++    +P A D + K+L+ +  +R+TA +AL H + 
Sbjct: 255 QSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF 303

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 199 DFIAKILIKNPMERMTAKEALKHPWL 224
           DFI++ LIKN  +R   +E L+HP++
Sbjct: 250 DFISECLIKNYEQRPFMEELLEHPFI 275

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 19/122 (15%)

Query: 120 DIKVCDFEISRVILDG-IEIRELLGTPDYVGK---------------SLGVTAYVLLTGF 163
           D+K+ DF ++  + D  I+    +GTP ++                 SLG+TA  L  G 
Sbjct: 139 DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE 198

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
            P    +D    R +     + P  L  + S   K+FI   L K+P  R TAKE LKH +
Sbjct: 199 PP---NSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKF 255

Query: 224 LM 225
           ++
Sbjct: 256 IV 257

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 27/126 (21%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
            K+ DF + +  IL+G+      GTPDY+                 +LGV  Y ++ G  
Sbjct: 135 CKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQP 194

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-------TAKE 217
           PF  + + + F +I    + +P  L    S EA   +   + KNP +R+           
Sbjct: 195 PFEADNEDDLFESILHDDVLYPVWL----SKEAVSILKAFMTKNPNKRLGCVASQGGEDA 250

Query: 218 ALKHPW 223
             +HP+
Sbjct: 251 IKQHPF 256

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 34/145 (23%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P N+++        IK+CDF +S  +++ I     +GT  Y+                
Sbjct: 130 IKPSNILVNS---RGQIKLCDFGVSGELINSIA-DTFVGTSTYMSPERIQGGKYTVKSDV 185

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF------------EDISPEA 197
            SLG++   L  G  PF     S    +     +   D L              D   + 
Sbjct: 186 WSLGISIIELALGKFPF---AFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDL 242

Query: 198 KDFIAKILIKNPMERMTAKEALKHP 222
           +DF+   L+K+P ER T ++    P
Sbjct: 243 RDFVDACLLKDPTERPTPQQLCAMP 267

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISK-AQLDFPDELFEDISPEAKDFIAKILIKNP 209
           S+G     + T   P+  E  S     I K A       + E +SP  +D   + L   P
Sbjct: 193 SVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQP 252

Query: 210 MERMTAKEALKHP 222
            +R  ++E LKHP
Sbjct: 253 EDRPPSRELLKHP 265

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 120 DIKVCDFEISRVILDG-IEIRELLGTPDYVGK---------------SLGVTAYVLLTGF 163
           D+K+ DF ++  + D  I+    +GTP ++                 SLG+TA  L  G 
Sbjct: 139 DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 198

Query: 164 SPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
            P    +D    R +     + P  L    S   K+F+   L K+P  R TAKE LKH +
Sbjct: 199 PPN---SDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKF 255

Query: 224 LM 225
           + 
Sbjct: 256 IT 257

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 30/99 (30%)

Query: 133 LDGI-EIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE--- 188
           LD I +I ++LGTPD         A VL             + FR       +FP +   
Sbjct: 205 LDQIAKIHDVLGTPD---------AEVL-------------KKFRKSRHMNYNFPSKKGT 242

Query: 189 ----LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
               L  + S E  D + K+L  +P ER+TAK+AL+HP+
Sbjct: 243 GLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 53/169 (31%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-----IRELLGTPDYVGK--------- 150
           L+P NL++  D   C++K+CDF ++R   +        + E + T  Y            
Sbjct: 131 LKPGNLLVNAD---CELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSY 187

Query: 151 -------SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS--KAQ---- 182
                  S+G     LL     F G+                D ET   I   KAQ    
Sbjct: 188 TKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIR 247

Query: 183 -------LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                    F   +F + +P A D + K+L  +P +R++ +EAL+HP+L
Sbjct: 248 SLPNIPKKPFE-SIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYL 295

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG0615|consensus	475		100.0
KOG0575|consensus	592		100.0
KOG0033|consensus	355		100.0
KOG0598|consensus	357		100.0
KOG0581|consensus	364		100.0
KOG0593|consensus	396		100.0
KOG0592|consensus	604		100.0
KOG0588|consensus	786		100.0
KOG0605|consensus	550		100.0
KOG0599|consensus	411		100.0
KOG0616|consensus	355		100.0
KOG0660|consensus	359		100.0
KOG0595|consensus	429		100.0
KOG0032|consensus	382		100.0
KOG0583|consensus	370		100.0
KOG0597|consensus	808		100.0
KOG0585|consensus	576		100.0
KOG0659|consensus	318		100.0
KOG0604|consensus	400		100.0
KOG0694|consensus	694		100.0
KOG0600|consensus	560		100.0
KOG0663|consensus	419		100.0
KOG0661|consensus	538		100.0
KOG0591|consensus	375		100.0
KOG0658|consensus	364		100.0
KOG0198|consensus	313		100.0
KOG0580|consensus	281		100.0
KOG4717|consensus	864		100.0
KOG0611|consensus	668		100.0
KOG0578|consensus	550		100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0607|consensus	463		100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0690|consensus	516		100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0582|consensus	516		100.0
KOG0594|consensus	323		100.0
KOG0610|consensus	459		100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0586|consensus	596		100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0201|consensus	467		100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
KOG4236|consensus	888		100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0192|consensus	362		100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0667|consensus	586		100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
KOG0612|consensus	1317		100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
KOG0577|consensus	948		100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0589|consensus	426		100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG0986|consensus	591		100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
KOG0983|consensus	391		100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0579|consensus	1187		100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG0574|consensus	502		100.0
KOG0584|consensus	632		100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0662|consensus	292		100.0
KOG0669|consensus	376		100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
KOG4721|consensus	904		100.0
KOG0614|consensus	732		100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
KOG4279|consensus	1226		100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
KOG0696|consensus	683		100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
KOG4645|consensus	1509		100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
KOG0197|consensus	468		100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
KOG1006|consensus	361		100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.98
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.98
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.98
KOG4250|consensus	732		99.98
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.98
KOG0596|consensus	677		99.98
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.98
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.98
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.98
KOG0603|consensus	612		99.98
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.98
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.98
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.98
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.98
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.98
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.98
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.98
KOG0666|consensus	438		99.98
KOG0608|consensus	1034		99.98
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.98
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.98
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.98
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.97
KOG1035|consensus	1351		99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.97
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.97
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.97
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
KOG0193|consensus	678		99.97
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.97
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.97
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.97
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.97
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.97
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.97
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.97
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.97
KOG1989|consensus	738		99.97
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.97
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.97
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.97
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.97
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.97
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.97
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.97
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.97
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.97
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.97
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.97
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.97
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.97
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.97
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.97
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.97
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.97
KOG1187|consensus	361		99.97
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.97
KOG0668|consensus	338		99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.97
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.97
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.97
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.97
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.97
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.97
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.97
KOG0194|consensus	474		99.97
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.97
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.97
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.97
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.97
KOG2345|consensus	302		99.97
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.97
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.97
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.97
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.97
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.97
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.97
KOG0665|consensus	369		99.97
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.97
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.97
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.97
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.97
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.97
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.97
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.96
KOG0671|consensus	415		99.96
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.96
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.96
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
KOG1026|consensus	774		99.96
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.96
KOG0587|consensus	953		99.96
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.96
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.96
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.96
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.96
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.96
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.96
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.96
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.96
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.96
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.96
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.96
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.96
KOG1027|consensus	903		99.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.96
KOG4257|consensus	974		99.96
KOG0664|consensus	449		99.96
KOG1095|consensus	1025		99.96
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.95
KOG1151|consensus	775		99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
KOG0670|consensus	752		99.95
KOG0695|consensus	593		99.95
KOG0196|consensus	996		99.95
KOG0199|consensus	1039		99.95
KOG0576|consensus	829		99.94
KOG4278|consensus	1157		99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG3653|consensus	534		99.93
KOG2052|consensus	513		99.93
KOG0984|consensus	282		99.92
KOG1094|consensus	807		99.92
KOG1167|consensus	418		99.91
KOG1025|consensus	1177		99.9
KOG1290|consensus	590		99.89
KOG0200|consensus	609		99.89
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.88
KOG1152|consensus	772		99.88
KOG1345|consensus	378		99.86
PRK09188	365	serine/threonine protein kinase; Provisional	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG1165|consensus	449		99.85
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.84
KOG1163|consensus	341		99.84
KOG0590|consensus	601		99.83
KOG0603|consensus	612		99.81
KOG0606|consensus	1205		99.81
KOG1164|consensus	322		99.8
KOG1024|consensus	563		99.79
PRK12274	218	serine/threonine protein kinase; Provisional	99.78
KOG1023|consensus	484		99.77
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.73
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.72
PRK10345	210	hypothetical protein; Provisional	99.72
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.72
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.71
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.69
KOG1240|consensus	1431		99.64
smart00090	237	RIO RIO-like kinase.	99.57
PRK14879	211	serine/threonine protein kinase; Provisional	99.55
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.53
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.53
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.52
KOG0590|consensus	601		99.52
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.51
KOG4158|consensus	598		99.48
KOG1166|consensus	974		99.44
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.42
KOG0195|consensus	448		99.32
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.32
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.3
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.26
KOG1033|consensus	516		99.16
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.12
KOG0601|consensus	524		99.11
KOG0606|consensus	1205		99.06
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.01
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.88
KOG3087|consensus	229		98.77
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.76
KOG1243|consensus	690		98.65
KOG3741|consensus	655		98.45
KOG0601|consensus	524		98.39
KOG1266|consensus	458		98.24
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.23
KOG2137|consensus	700		98.19
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.11
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.06
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.97
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.82
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.71
COG4248	637	Uncharacterized protein with protein kinase and he	97.65
KOG0576|consensus	829		97.6
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.6
KOG1235|consensus	538		97.57
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.49
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.37
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.32
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.31
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.06
PRK09902	216	hypothetical protein; Provisional	97.05
PRK12396	409	5-methylribose kinase; Reviewed	96.86
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.86
PF01636	239	APH: Phosphotransferase enzyme family This family	96.78
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.76
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.75
PLN02876	822	acyl-CoA dehydrogenase	96.72
PRK05231	319	homoserine kinase; Provisional	96.42
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.32
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.29
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	96.15
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.07
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.03
PLN02756	418	S-methyl-5-thioribose kinase	95.43
KOG1035|consensus	1351		95.34
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	94.18
KOG1826|consensus	2724		93.93
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	93.81
PRK10593	297	hypothetical protein; Provisional	93.23
KOG2268|consensus	465		92.86
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	92.76
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	91.36
KOG1033|consensus	516		91.02
KOG2270|consensus	520		90.69
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	89.4
PRK10271	188	thiK thiamine kinase; Provisional	88.68
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.57
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	87.81
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	87.74
PLN02236	344	choline kinase	87.6
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	87.17
KOG1093|consensus	725		86.7
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	85.86
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	85.16
cd00052	67	EH Eps15 homology domain; found in proteins implic	85.0
COG2334	331	Putative homoserine kinase type II (protein kinase	84.39
COG4857	408	Predicted kinase [General function prediction only	84.34
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	84.33

>KOG0615|consensus

Probab=100.00  E-value=8.9e-52  Score=379.76  Aligned_cols=222  Identities=27%  Similarity=0.386  Sum_probs=194.2

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceE
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~   72 (379)
                      +..+.||+|+||.|-+|.++.||+.|| +|+++..          ....+.+|++||++|+|||||++++++..   .|+
T Consensus       175 ii~~~LGsGafg~Vkla~e~~tgk~vA-iKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~Ym  253 (475)
T KOG0615|consen  175 IISKTLGSGAFGLVKLAYEKKTGKQVA-IKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYM  253 (475)
T ss_pred             EeeeeecCCceeEEEEEEEcccCcEEE-eeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEE
Confidence            556689999999999999999999999 5655431          11236799999999999999999999875   699


Q ss_pred             EeeC--CchhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          73 GLNP--RPPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        73 v~e~--~g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+||  +|+||+.              .+-+.|+.+.++|++||+||||||+|||+..+.....+||+|||+|+.....+
T Consensus       254 VlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~s  333 (475)
T KOG0615|consen  254 VLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGS  333 (475)
T ss_pred             EEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccccce
Confidence            9999  9999998              22344444444444999999999999999987556889999999999988888


Q ss_pred             cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .+.+.||||.|.||                  |+||++|.+|+|.+||.+.... .+.++|.+|.+.+-+..|..+|+++
T Consensus       334 fm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea  413 (475)
T KOG0615|consen  334 FMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEA  413 (475)
T ss_pred             ehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHH
Confidence            99999999999999                  9999999999999999876544 4889999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..||.+||++|||++|+|+||||+...
T Consensus       414 ~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  414 LDLINWMLVVDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             HHHHHHhhEeCcccCcCHHHHhcChhhhccc
Confidence            9999999999999999999999999998654

>KOG0575|consensus

Probab=100.00  E-value=1.8e-46  Score=360.38  Aligned_cols=215  Identities=26%  Similarity=0.375  Sum_probs=188.2

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      +-.+.+||+|||..||.+++..+|+.||+ |++..      ..++.+.+||+|.+.|+|||||++|++|++   .|++.|
T Consensus        20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~-KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLE   98 (592)
T KOG0575|consen   20 YKRGRFLGKGGFARCYEARDLDTGEVVAV-KVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLE   98 (592)
T ss_pred             eeeeeeeccCcceEEEEEEEcCCCcEEEE-EEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEE
Confidence            35556999999999999999999999994 54433      456789999999999999999999999998   899999


Q ss_pred             C--CchhhHH----------HHHHHHhcc----cCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          76 P--RPPVYQA----------SATTKAGSV----LFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        76 ~--~g~l~~~----------~al~~lh~~----~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      +  +|+|...          .|..|++++    .++|+++|+|||||..|+|+++.   .++||+|||+|..+... +..
T Consensus        99 LC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~---~~VKIgDFGLAt~le~~~Erk  175 (592)
T KOG0575|consen   99 LCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNEN---MNVKIGDFGLATQLEYDGERK  175 (592)
T ss_pred             ecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCc---CcEEecccceeeeecCccccc
Confidence            9  6666665          333333332    22444999999999999999985   89999999999998744 678


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      .+.||||.|+||               |+||++|.||+|+|||...+..+.+.+|+...+.+|.    .+|.++++||.+
T Consensus       176 ~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~----~ls~~A~dLI~~  251 (592)
T KOG0575|consen  176 KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPS----HLSAEAKDLIRK  251 (592)
T ss_pred             ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCccccc----ccCHHHHHHHHH
Confidence            899999999999               9999999999999999999999999999999999987    589999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCC
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||..||.+|||++++|.|+||...
T Consensus       252 lL~~~P~~Rpsl~~vL~h~Ff~~g  275 (592)
T KOG0575|consen  252 LLRPNPSERPSLDEVLDHPFFKSG  275 (592)
T ss_pred             HhcCCcccCCCHHHHhcCHhhhCC
Confidence            999999999999999999999543

>KOG0033|consensus

Probab=100.00  E-value=3.5e-47  Score=328.17  Aligned_cols=220  Identities=27%  Similarity=0.432  Sum_probs=194.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .++||+|.|+.||++.+..||+.+|+ |+++.     ..-+.+.+|++|.+.|+|||||++.+.+.+   .|+++|+  +
T Consensus        16 ~e~igkG~FSvVrRc~~~~tg~~fa~-kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G   94 (355)
T KOG0033|consen   16 KEELGKGAFSVVRRCVHKTTGLEFAA-KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG   94 (355)
T ss_pred             HHHHccCchHHHHHHHhccchHHHHH-HHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccc
Confidence            45999999999999999999999984 44433     355789999999999999999999998776   7899999  7


Q ss_pred             chhhHH----------HHHHH----HhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          78 PPVYQA----------SATTK----AGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        78 g~l~~~----------~al~~----lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                      |+++..          .|-.|    |.++-+||.+||||||+||+|+++.+.+....+||+|||+|....++.....++|
T Consensus        95 ~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~G  174 (355)
T KOG0033|consen   95 GELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAG  174 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccC
Confidence            777765          12222    2222335559999999999999999987778899999999999987777888999


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccC
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN  208 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  208 (379)
                      ||.||||               ++|||+|.||.|.+||.+.+...++++|..+.+.+|++.|+.+++++++|+++||..|
T Consensus       175 tP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~d  254 (355)
T KOG0033|consen  175 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVN  254 (355)
T ss_pred             CCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccC
Confidence            9999999               9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHhcCccccCCc
Q psy6046         209 PMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       209 P~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |++|+|+.|+|+|||+.+..
T Consensus       255 P~kRIta~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  255 PKKRITADEALKHPWICNRE  274 (355)
T ss_pred             hhhhccHHHHhCCchhcchH
Confidence            99999999999999998754

>KOG0598|consensus

Probab=100.00  E-value=2.6e-46  Score=340.90  Aligned_cols=213  Identities=27%  Similarity=0.338  Sum_probs=191.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc------cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN------VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||+||+++.+.|++.||. |.++      ..+......|..||..++||.||++++.+++   +|+|+||  |
T Consensus        31 kviGkG~fGkV~~Vrk~dt~kiYAm-Kvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~G  109 (357)
T KOG0598|consen   31 KVIGKGSFGKVFQVRKKDTGKIYAM-KVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNG  109 (357)
T ss_pred             eeeeccCCceEEEEEEcccCceeeh-hhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCC
Confidence            3899999999999999999999994 4333      3456789999999999999999999999887   8999999  8


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+||..                    .|+.|||+      .|||||||||+|||++.+   |+++|+|||+|+... .+.
T Consensus       110 GeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~------~gIiyRDlKPENILLd~~---GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  110 GELFYHLQREGRFSEDRARFYLAEIVLALGYLHS------KGIIYRDLKPENILLDEQ---GHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             ccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHh------CCeeeccCCHHHeeecCC---CcEEEeccccchhcccCCC
Confidence            899887                    78999999      999999999999999997   999999999998644 445


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ...++|||+.||||               |+|+++|+|++|.+||.+.+.....++|..++...++.   -+|.+++++|
T Consensus       181 ~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~---~ls~~ardll  257 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPG---YLSEEARDLL  257 (357)
T ss_pred             ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCc---cCCHHHHHHH
Confidence            66778999999999               99999999999999999999999999999998666553   3899999999


Q ss_pred             HHhcccCCCCCC----CHHHHhcCccccCCccccccc
Q psy6046         202 AKILIKNPMERM----TAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       202 ~~~L~~dP~~Rp----t~~e~l~hp~~~~~~~~~~~~  234 (379)
                      +++|..||++|.    ++.++.+||||...+|.....
T Consensus       258 ~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~  294 (357)
T KOG0598|consen  258 KKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLA  294 (357)
T ss_pred             HHHhccCHHHhcCCCCChHHhhcCcccccCCHHHHHh
Confidence            999999999996    799999999999999887644

>KOG0581|consensus

Probab=100.00  E-value=7.1e-45  Score=331.67  Aligned_cols=212  Identities=22%  Similarity=0.282  Sum_probs=179.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~--~g~   79 (379)
                      +||+|+.|+||+|+|+.|++.+|. |.+.    ..-..++.+|+++++.++||+||.+|+.|..    ++++|||  +|+
T Consensus        86 ~lG~G~gG~V~kv~Hk~t~~i~Al-K~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGS  164 (364)
T KOG0581|consen   86 VLGSGNGGTVYKVRHKPTGKIYAL-KVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGS  164 (364)
T ss_pred             hcccCCCcEEEEEEEcCCCeEEEE-EeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCC
Confidence            899999999999999999999994 5442    2335679999999999999999999998653    7899999  777


Q ss_pred             hhHH--------------HHHHHHhcccCCC-CCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccC
Q psy6046          80 VYQA--------------SATTKAGSVLFPP-LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT  144 (379)
Q Consensus        80 l~~~--------------~al~~lh~~~~~h-~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt  144 (379)
                      |-+.              .|.+.|+++.+|| +++||||||||+|||+++.   |.+||||||.++.+.+. ..++++||
T Consensus       165 Ld~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNsk---GeVKicDFGVS~~lvnS-~a~tfvGT  240 (364)
T KOG0581|consen  165 LDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSK---GEVKICDFGVSGILVNS-IANTFVGT  240 (364)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccC---CCEEeccccccHHhhhh-hccccccc
Confidence            7766              3333344444444 3999999999999999996   99999999999988766 77899999


Q ss_pred             CCCcch---------------HHHHHHHHHhhCCCCCCCC-----ChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         145 PDYVGK---------------SLGVTAYVLLTGFSPFGGE-----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       145 ~~y~aP---------------SlGvil~~lltg~~Pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..||||               |||+.+.||++|+.||...     ...+++..|..++.+-.+.  ..+|+++++||..|
T Consensus       241 ~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~--~~fS~ef~~FV~~C  318 (364)
T KOG0581|consen  241 SAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPE--GEFSPEFRSFVSCC  318 (364)
T ss_pred             ccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCc--ccCCHHHHHHHHHH
Confidence            999999               9999999999999999764     6778899998865332222  14999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |++||.+|||+.|+++|||++...
T Consensus       319 L~Kdp~~R~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  319 LRKDPSERPSAKQLLQHPFIKKFE  342 (364)
T ss_pred             hcCCcccCCCHHHHhcCHHHhhcc
Confidence            999999999999999999998765

>KOG0593|consensus

Probab=100.00  E-value=2e-45  Score=326.04  Aligned_cols=215  Identities=20%  Similarity=0.253  Sum_probs=176.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccc----hHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C---
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQG----VVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R---   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~----~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~---   77 (379)
                      .+|+|+||+||+|+++.||+.||++|.....+.    .-.+||+++|++|+|||+|.+.++|..   +++|+||  .   
T Consensus         9 kvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTvL   88 (396)
T KOG0593|consen    9 KVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTVL   88 (396)
T ss_pred             ccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHHH
Confidence            789999999999999999999998887776553    347899999999999999999999875   8999999  1   


Q ss_pred             --------chhhHH---HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCccccccccCC
Q psy6046          78 --------PPVYQA---SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELLGTP  145 (379)
Q Consensus        78 --------g~l~~~---~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~~~~~~~gt~  145 (379)
                              |--.+.   ..-+.+..+-+||+++++||||||+|||++..   +.+||||||+|+.+. .+...+.++.|+
T Consensus        89 ~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~---gvvKLCDFGFAR~L~~pgd~YTDYVATR  165 (396)
T KOG0593|consen   89 HELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQN---GVVKLCDFGFARTLSAPGDNYTDYVATR  165 (396)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecC---CcEEeccchhhHhhcCCcchhhhhhhhh
Confidence                    111111   11222233333445999999999999999986   999999999999887 666778899999


Q ss_pred             CCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-------------------CCc---
Q psy6046         146 DYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-------------------FPD---  187 (379)
Q Consensus       146 ~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-------------------~~~---  187 (379)
                      ||+||                |+||++.||++|.+.|+|.++.+++..|...-..                   +|.   
T Consensus       166 WYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~  245 (396)
T KOG0593|consen  166 WYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEH  245 (396)
T ss_pred             hccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCC
Confidence            99999                9999999999999999999998888777543211                   111   


Q ss_pred             -----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         188 -----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       188 -----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                           ...+.++.-+.||+++||..||++|++.+|+|.||||.+.
T Consensus       246 ~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~  290 (396)
T KOG0593|consen  246 PEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGF  290 (396)
T ss_pred             ccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHH
Confidence                 2235678889999999999999999999999999999544

>KOG0592|consensus

Probab=100.00  E-value=1.6e-44  Score=342.08  Aligned_cols=215  Identities=23%  Similarity=0.355  Sum_probs=192.1

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEE
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v   73 (379)
                      |-..+++||.|+|++|++|+++.|+++|| +|+...      ....-+.+|-.+|.+| .||.|+++|..|++   +|.+
T Consensus        74 DF~Fg~~lGeGSYStV~~A~~~~t~keYA-iKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFv  152 (604)
T KOG0592|consen   74 DFKFGKILGEGSYSTVVLAREKATGKEYA-IKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFV  152 (604)
T ss_pred             hcchhheeccccceeEEEeeecCCCceee-HhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEE
Confidence            55778899999999999999999999999 455443      3345588999999999 79999999999887   8999


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +||  +|+|+++                    .|++|||+      +|||||||||+|||++.+   +.+||+|||.|+.
T Consensus       153 Le~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~------~GIIHRDlKPENILLd~d---mhikITDFGsAK~  223 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHS------NGIIHRDLKPENILLDKD---GHIKITDFGSAKI  223 (604)
T ss_pred             EEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh------cCceeccCChhheeEcCC---CcEEEeecccccc
Confidence            999  8888888                    67888888      999999999999999996   9999999999998


Q ss_pred             eccCc--------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC
Q psy6046         132 ILDGI--------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ  182 (379)
Q Consensus       132 ~~~~~--------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~  182 (379)
                      +....              ...+++||..|.+|               +||||+|.|+.|++||.+.+..-++++|..-.
T Consensus       224 l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~  303 (604)
T KOG0592|consen  224 LSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALD  303 (604)
T ss_pred             CChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhc
Confidence            74321              12458999999999               99999999999999999999999999999999


Q ss_pred             CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         183 LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       183 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      +.||+    .+++.++|||+++|..||.+|+|++||.+||||.+..|...
T Consensus       304 y~fp~----~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~nl  349 (604)
T KOG0592|consen  304 YEFPE----GFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWENL  349 (604)
T ss_pred             ccCCC----CCCHHHHHHHHHHHccCccccccHHHHhhCcccccCChhhh
Confidence            99987    58999999999999999999999999999999999887753

>KOG0588|consensus

Probab=100.00  E-value=3.2e-44  Score=346.48  Aligned_cols=271  Identities=23%  Similarity=0.295  Sum_probs=218.9

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++.-||+|+-|.|.+|+|..||+.+| +|++...      ....+.+||-||+.++|||++++|+++++   +|++.|| 
T Consensus        16 LgkTLG~Gstg~vrlakh~~TGqlaa-iKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv   94 (786)
T KOG0588|consen   16 LGKTLGKGSTGCVRLAKHAETGQLAA-IKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYV   94 (786)
T ss_pred             ccccccCCCCceehhhhcccccceeE-EEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEec
Confidence            44589999999999999999999887 5665543      23568999999999999999999999876   8999999 


Q ss_pred             -CchhhHH----------HHHHHHhc----ccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc
Q psy6046          77 -RPPVYQA----------SATTKAGS----VLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL  141 (379)
Q Consensus        77 -~g~l~~~----------~al~~lh~----~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~  141 (379)
                       +|+||++          .|+.|+.+    +.+||..+|+||||||+|+|++..   +.+||+|||+|..-..+..+.+.
T Consensus        95 ~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~---~nIKIADFGMAsLe~~gklLeTS  171 (786)
T KOG0588|consen   95 PGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVK---NNIKIADFGMASLEVPGKLLETS  171 (786)
T ss_pred             CCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcc---cCEeeeccceeecccCCcccccc
Confidence             9999998          45544443    344777999999999999999997   56999999999988888899999


Q ss_pred             ccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhc
Q psy6046         142 LGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       142 ~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  205 (379)
                      ||+|.|.||                |+|||+|.||||++||.+.+...++.++++|.+.+|.    .+|+++.+||++||
T Consensus       172 CGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs----~Is~eaQdLLr~ml  247 (786)
T KOG0588|consen  172 CGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPS----NISSEAQDLLRRML  247 (786)
T ss_pred             CCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCC----cCCHHHHHHHHHHh
Confidence            999999999                9999999999999999999999999999999999985    69999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccCCccccccc---CC--CCCCccccchhhhHHHHHHH-----HHhHHHHHHHHHhhhHHHH
Q psy6046         206 IKNPMERMTAKEALKHPWLMNKKQIMTRV---GC--SSCPSIIQNQQNKKNLRKYL-----SKSREALFEKVISASKLQQ  275 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~  275 (379)
                      .+||.+|+|.+|+++|||+.+........   ..  .........+.....+.+.+     .+.++.+.+++.+...+ +
T Consensus       248 ~VDp~~RiT~~eI~kHP~l~g~~~~~~~~~~~~~~~~~i~s~ps~~~IDp~Il~~l~iLwc~~d~~kl~~kLls~~~n-~  326 (786)
T KOG0588|consen  248 DVDPSTRITTEEILKHPFLSGYTSLPSSKSLRPPVSVPILSIPSIQEIDPLILQHLCILWCGRDPEKLVEKLLSPDDN-D  326 (786)
T ss_pred             ccCccccccHHHHhhCchhhcCCCCChhhhcCCCcccceeecCCcccCCHHHHhhhhheeecCChHHHHHHHcCCCcc-h
Confidence            99999999999999999999876544321   01  11111121222333333332     36688888888877774 4


Q ss_pred             HHHHHhhhhcc
Q psy6046         276 ENLRKSALLKY  286 (379)
Q Consensus       276 ~~l~~~~~~~~  286 (379)
                      |.+....+...
T Consensus       327 EK~~Y~LLl~~  337 (786)
T KOG0588|consen  327 EKTLYFLLLRR  337 (786)
T ss_pred             hHHHHHHHHHh
Confidence            55555555443

>KOG0605|consensus

Probab=100.00  E-value=3.2e-44  Score=340.05  Aligned_cols=233  Identities=26%  Similarity=0.355  Sum_probs=197.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|+||.||+|+.+.||+.+|+ |++..      .+.+.++.|-.+|...++|+||++|+.|++   +|++|||  ||
T Consensus       148 ~IgkGAfGeVrLarKk~Tg~iyAm-K~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGG  226 (550)
T KOG0605|consen  148 VIGKGAFGEVRLARKKDTGEIYAM-KILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGG  226 (550)
T ss_pred             eeccccceeEEEEEEccCCcEEee-ecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCc
Confidence            899999999999999999999994 44443      456779999999999999999999999987   8999999  88


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc----
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD----  134 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~----  134 (379)
                      ++...                    .|+..||+      +|+|||||||+|+|++..   |++||+|||+|..+..    
T Consensus       227 D~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~------~gyIHRDIKPdNlLiD~~---GHiKLSDFGLs~gl~~~~~~  297 (550)
T KOG0605|consen  227 DMMTLLMRKDTLTEDWARFYIAETVLAIESIHQ------LGYIHRDIKPDNLLIDAK---GHIKLSDFGLSTGLDKKHRI  297 (550)
T ss_pred             cHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHH------cCcccccCChhheeecCC---CCEeeccccccchhhhhhhh
Confidence            77766                    67777887      999999999999999996   9999999999964311    


Q ss_pred             ------------------C--------------------------ccccccccCCCCcch---------------HHHHH
Q psy6046         135 ------------------G--------------------------IEIRELLGTPDYVGK---------------SLGVT  155 (379)
Q Consensus       135 ------------------~--------------------------~~~~~~~gt~~y~aP---------------SlGvi  155 (379)
                                        .                          ....+.+|||.||||               |||||
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~I  377 (550)
T KOG0605|consen  298 ESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCI  377 (550)
T ss_pred             hhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHH
Confidence                              0                          001236899999999               99999


Q ss_pred             HHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccccCCCHHHHHHHHHhcccCCCCCC---CHHHHhcCccccCCccc
Q psy6046         156 AYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       156 l~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---t~~e~l~hp~~~~~~~~  230 (379)
                      +||||.|.+||.+.++.+++++|.+..  +.+|..  ..++++++|||.+||. ||.+|.   +++||..||||++..|.
T Consensus       378 myEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~--~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~  454 (550)
T KOG0605|consen  378 MYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEE--VDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWD  454 (550)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCc--CcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcc
Confidence            999999999999999999999998866  666655  3688999999999999 999999   59999999999999999


Q ss_pred             ccccCCCCCCccccchhhhHHHHHH
Q psy6046         231 MTRVGCSSCPSIIQNQQNKKNLRKY  255 (379)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~  255 (379)
                      ........+.+.........++..|
T Consensus       455 ~l~~~~apfvP~v~~~~DT~yFddF  479 (550)
T KOG0605|consen  455 HLREMPAPFVPQVNSELDTQYFDDF  479 (550)
T ss_pred             hhhcCCCCCCCCCCCcccccccccC
Confidence            8777666665555555555555544

>KOG0599|consensus

Probab=100.00  E-value=6e-45  Score=318.76  Aligned_cols=214  Identities=26%  Similarity=0.383  Sum_probs=194.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCC-CCCcceeeeecCc---ceE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~   72 (379)
                      -+++||+|..++|.++.++.||+++|++++....          -++...+|+.||+++. ||+|+++.+++++   .++
T Consensus        21 pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~Fl  100 (411)
T KOG0599|consen   21 PKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFL  100 (411)
T ss_pred             hHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhh
Confidence            3569999999999999999999999965543321          1345788999999998 9999999999887   678


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      |+|+  +|+||++                    .++.|||.      ++||||||||+|||+++.   ..+||+|||+|+
T Consensus       101 VFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa------~~IVHRDLKpENILlddn---~~i~isDFGFa~  171 (411)
T KOG0599|consen  101 VFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHA------RNIVHRDLKPENILLDDN---MNIKISDFGFAC  171 (411)
T ss_pred             hhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHH------hhhhhcccChhheeeccc---cceEEeccceee
Confidence            8999  9999999                    67888888      999999999999999984   999999999999


Q ss_pred             eeccCccccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc
Q psy6046         131 VILDGIEIRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~  189 (379)
                      .+..++.+...||||.|.||                     ++|||+|.||.|.+||.-....-.+..|..|.+.|..+.
T Consensus       172 ~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~spe  251 (411)
T KOG0599|consen  172 QLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPE  251 (411)
T ss_pred             ccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcc
Confidence            99999999999999999999                     999999999999999988777778899999999999999


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      |.++|..++|||.+||++||.+|+|++|+|.||||.+...
T Consensus       252 Wadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q~~~  291 (411)
T KOG0599|consen  252 WADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQIAQ  291 (411)
T ss_pred             hhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHHHHH
Confidence            9999999999999999999999999999999999976543

>KOG0616|consensus

Probab=100.00  E-value=1.3e-43  Score=313.68  Aligned_cols=209  Identities=23%  Similarity=0.357  Sum_probs=191.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .||.|+||+|-+++++.+|..|| .|.++.      ++.++..+|..+|+.+.||.++++++.+.+   +|++|||  +|
T Consensus        51 tlGtGSFGrV~LVr~k~~g~yYA-mKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GG  129 (355)
T KOG0616|consen   51 TLGTGSFGRVHLVREKHSGNYYA-MKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGG  129 (355)
T ss_pred             eeccCccceEEEEEEccCCceee-hhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCc
Confidence            89999999999999999998888 565544      556789999999999999999999988776   8999999  99


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ++|..                    .|++|||+      .+|++|||||+|||++..   |.+||+|||+|+.....  .
T Consensus       130 ElFS~Lrk~~rF~e~~arFYAAeivlAleylH~------~~iiYRDLKPENiLlD~~---G~iKitDFGFAK~v~~r--T  198 (355)
T KOG0616|consen  130 ELFSYLRKSGRFSEPHARFYAAEIVLALEYLHS------LDIIYRDLKPENLLLDQN---GHIKITDFGFAKRVSGR--T  198 (355)
T ss_pred             cHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHh------cCeeeccCChHHeeeccC---CcEEEEeccceEEecCc--E
Confidence            99998                    78999999      999999999999999986   99999999999987544  6


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      -+.||||.|+||               ||||++|||+.|.+||.+.++..++++|..+.+.||..    +|+++++||++
T Consensus       199 ~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~----fs~~~kdLl~~  274 (355)
T KOG0616|consen  199 WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSY----FSSDAKDLLKK  274 (355)
T ss_pred             EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcc----cCHHHHHHHHH
Confidence            778999999999               99999999999999999999999999999999999974    89999999999


Q ss_pred             hcccCCCCCC-----CHHHHhcCccccCCccccccc
Q psy6046         204 ILIKNPMERM-----TAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       204 ~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~~~  234 (379)
                      +|++|-.+|.     ...++.+||||++..|.....
T Consensus       275 LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~  310 (355)
T KOG0616|consen  275 LLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQ  310 (355)
T ss_pred             HHhhhhHhhhcCcCCCccccccCcccccccHHHHhh
Confidence            9999999995     578999999999999886544

>KOG0660|consensus

Probab=100.00  E-value=1.4e-43  Score=321.97  Aligned_cols=222  Identities=26%  Similarity=0.336  Sum_probs=184.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e~   76 (379)
                      +.||+|+||.|+.|.++.||+.||++|+.+.    ....+..||+++|+.++|+||+.+++++.        +.|+++|+
T Consensus        28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~el  107 (359)
T KOG0660|consen   28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFEL  107 (359)
T ss_pred             ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhH
Confidence            5799999999999999999999998887744    44577999999999999999999998743        48999999


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                       ..+|.+.                    .|+.|+|+      .||+||||||+|+|++.+   +.+||||||+|+.... 
T Consensus       108 MetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHS------AnViHRDLKPsNll~n~~---c~lKI~DFGLAR~~~~~  178 (359)
T KOG0660|consen  108 METDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHS------ANVIHRDLKPSNLLLNAD---CDLKICDFGLARYLDKF  178 (359)
T ss_pred             HhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhc------ccccccccchhheeeccC---CCEEeccccceeecccc
Confidence             3333322                    56666666      999999999999999986   9999999999998853 


Q ss_pred             --CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-------------
Q psy6046         135 --GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-------------  183 (379)
Q Consensus       135 --~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-------------  183 (379)
                        ...++.++.|.||.||                |+|||++||++|++-|.|.+..+++..|..--.             
T Consensus       179 ~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~  258 (359)
T KOG0660|consen  179 FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSE  258 (359)
T ss_pred             CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccH
Confidence              4467889999999999                999999999999999999887766665533211             


Q ss_pred             ----------CCC----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccccCCCCC
Q psy6046         184 ----------DFP----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSC  239 (379)
Q Consensus       184 ----------~~~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~~~~~~  239 (379)
                                ..|    ...+++.++.+.||+.+||..||.+|+|++|+|.|||+........++.+...
T Consensus       259 ~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~dEP~~~~~  328 (359)
T KOG0660|consen  259 KARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPEDEPVCQPI  328 (359)
T ss_pred             HHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCccCCCCCCC
Confidence                      111    23457889999999999999999999999999999999999877777755443

>KOG0595|consensus

Probab=100.00  E-value=1.5e-42  Score=319.22  Aligned_cols=219  Identities=24%  Similarity=0.306  Sum_probs=190.0

Q ss_pred             CCCccCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEE
Q psy6046           2 ITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         2 ~~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v   73 (379)
                      +.|+..+.-||+|+||+||+|+++.++.+|| +|++...     ..+.+..|++||+.++|||||.+++++..   +|+|
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VA-IK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVA-IKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEE-eeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            4556666679999999999999999997777 5554443     45778999999999999999999999775   8999


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC---CcEEEeeccc
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN---CDIKVCDFEI  128 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~---~~ikl~DFG~  128 (379)
                      |||  +|+|-.+                    .|+++||+      ++||||||||+|||++....+   -.+||+|||+
T Consensus        88 MEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~------~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGf  161 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHE------NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGF  161 (429)
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCCcceEEeccCCCCCCCceEEecccch
Confidence            999  8888887                    67888888      999999999999999985222   5789999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      |+.+..+....+.||||.||||               |+|+|+|+|++|++||...+..+++..+.++....|. ....+
T Consensus       162 AR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~-~~~~~  240 (429)
T KOG0595|consen  162 ARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPV-LPAEL  240 (429)
T ss_pred             hhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCc-hhhhc
Confidence            9999988889999999999999               9999999999999999999999999999887654432 22457


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +....+|+...|..+|.+|.+..+.+.|++.....
T Consensus       241 s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  241 SNPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             cCchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence            88888999999999999999999999999997654

>KOG0032|consensus

Probab=100.00  E-value=1.2e-41  Score=325.94  Aligned_cols=221  Identities=29%  Similarity=0.422  Sum_probs=192.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      +..||+|.||.||+|+++.||+.+|++.+...     .+.+.+.+|+.||+.|. |||||.+++++++   ++++||+  
T Consensus        40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~  119 (382)
T KOG0032|consen   40 GRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCE  119 (382)
T ss_pred             hhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecC
Confidence            35899999999999999999999995333222     12367999999999999 9999999999876   8999999  


Q ss_pred             CchhhHH-------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeecccceeeccCccccccc
Q psy6046          77 RPPVYQA-------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISRVILDGIEIRELL  142 (379)
Q Consensus        77 ~g~l~~~-------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~~~~~~~~~~~~~  142 (379)
                      +|+||+.             ...+.++.+.+||+.||+||||||+|+|+..... ++.+|++|||++.....+......+
T Consensus       120 GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~  199 (382)
T KOG0032|consen  120 GGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIV  199 (382)
T ss_pred             CchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeec
Confidence            8999887             1122222233344499999999999999998743 4589999999999988777788999


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      ||+.|+||               |+|+++|.|++|.+||.+.+.......|..+.+.|+...|+.+|..+++||++||..
T Consensus       200 Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~  279 (382)
T KOG0032|consen  200 GTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEF  279 (382)
T ss_pred             CCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhccc
Confidence            99999999               999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||.+|+|+.++|.|||+++..
T Consensus       280 dp~~R~ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  280 DPRKRLTAAQALQHPWIKSIG  300 (382)
T ss_pred             CcccCCCHHHHhcCccccCCc
Confidence            999999999999999998764

>KOG0583|consensus

Probab=100.00  E-value=6.3e-42  Score=327.74  Aligned_cols=210  Identities=25%  Similarity=0.416  Sum_probs=187.4

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEE
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v   73 (379)
                      ..+..||+|+||.|+.|.+..+|..||+ |+.+..        ..+.+.+|+.+++.++ ||||+++++++..   +|++
T Consensus        20 ~~~~~lG~GsfgkV~~a~~~~t~~~vAi-Kii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~iv   98 (370)
T KOG0583|consen   20 ELGRTLGSGSFGKVKLAKHRLTGEKVAI-KIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIV   98 (370)
T ss_pred             eeeeeecCCCCeeEEEeeeccCCCeEEE-EEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEE
Confidence            4556899999999999999999988884 565542        2346779999999999 9999999999765   8999


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |||  +|+||++                    .|+.|+|+      +||+||||||+|||++..  .+.+||+|||++..
T Consensus        99 mEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~------~gi~HRDLK~ENilld~~--~~~~Kl~DFG~s~~  170 (370)
T KOG0583|consen   99 MEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHS------RGIVHRDLKPENILLDGN--EGNLKLSDFGLSAI  170 (370)
T ss_pred             EEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHh------CCEeeCCCCHHHEEecCC--CCCEEEeccccccc
Confidence            999  8899998                    56777777      999999999999999984  28999999999998


Q ss_pred             e-ccCccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         132 I-LDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       132 ~-~~~~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      . ..+....+.|||+.|+||                 |+||++|.|++|+.||...+...++..|.++.+.+|....   
T Consensus       171 ~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~---  247 (370)
T KOG0583|consen  171 SPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL---  247 (370)
T ss_pred             cCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC---
Confidence            8 466678999999999999                 9999999999999999999999999999999999987531   


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      |+++++|+.+||..||.+|+|+.++++||||+..
T Consensus       248 S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~~  281 (370)
T KOG0583|consen  248 SPEARSLIEKMLVPDPSTRITLLEILEHPWFQKE  281 (370)
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHhhChhhccC
Confidence            9999999999999999999999999999999973

>KOG0597|consensus

Probab=100.00  E-value=7.7e-43  Score=331.22  Aligned_cols=214  Identities=23%  Similarity=0.297  Sum_probs=189.0

Q ss_pred             CCccCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           3 TDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         3 ~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      .++...+.||+|+||+||+|+.+.|++.|| +|+++..     +...+.+|++|++.|+|||||.++++++.   +|+|.
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vA-ik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVA-IKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEE-EEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            455666799999999999999999998887 5665543     33459999999999999999999998875   89999


Q ss_pred             eC-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          75 NP-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        75 e~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      || .|+|+..                    +|+.|||+      .+|+|||+||.|||+...   +.+|+||||+|+...
T Consensus        81 e~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs------~rilhrd~kPqniLl~~~---~~~KlcdFg~Ar~m~  151 (808)
T KOG0597|consen   81 EYAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHS------NRILHRDMKPQNILLEKG---GTLKLCDFGLARAMS  151 (808)
T ss_pred             hhhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh------cCcccccCCcceeeecCC---Cceeechhhhhhhcc
Confidence            99 7788887                    67888888      999999999999999985   999999999999876


Q ss_pred             cCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         134 DGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       134 ~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .+. ..++..|||.||||               |+|||+|||.+|++||.+.+..++...|...+...|.    .+|..+
T Consensus       152 ~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~----~~S~~f  227 (808)
T KOG0597|consen  152 TNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPS----TASSSF  227 (808)
T ss_pred             cCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcc----cccHHH
Confidence            554 45667899999999               9999999999999999999999999999998877765    589999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      ++|+.++|.+||.+|.|+.+++.|||+++.-..
T Consensus       228 ~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~~~  260 (808)
T KOG0597|consen  228 VNFLQGLLIKDPAQRLTWTDLLGHPFWKGKINI  260 (808)
T ss_pred             HHHHHHHhhcChhhcccHHHHhcChHHhhhhhh
Confidence            999999999999999999999999999875433

>KOG0585|consensus

Probab=100.00  E-value=7.1e-42  Score=319.26  Aligned_cols=207  Identities=24%  Similarity=0.341  Sum_probs=181.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------------cchHHHHHHHHHHhCCCCCcceeeeecCc---
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---   69 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---   69 (379)
                      -||+|.||.|.+|++..+++.|| +|++...                 ..+.+.+||.||++|.|||||+++++..+   
T Consensus       104 eiG~G~yGkVkLar~~~~~~l~A-iKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s  182 (576)
T KOG0585|consen  104 EIGSGQYGKVKLARDEVDGKLYA-IKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPES  182 (576)
T ss_pred             hhcCCccceEEEEeecCCCcEEE-EEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCccc
Confidence            69999999999999999999988 5655431                 13578999999999999999999999765   


Q ss_pred             --ceEEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          70 --PLLGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        70 --~~~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                        +|+|+||  +|.+...                    .+|.|||.      +||+||||||+|+|++++   +++||+|
T Consensus       183 ~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~------QgiiHRDIKPsNLLl~~~---g~VKIsD  253 (576)
T KOG0585|consen  183 DKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHY------QGIIHRDIKPSNLLLSSD---GTVKISD  253 (576)
T ss_pred             CceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHh------cCeeccccchhheEEcCC---CcEEeec
Confidence              8999999  4433222                    67888888      999999999999999996   9999999


Q ss_pred             cccceeecc------CccccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh
Q psy6046         126 FEISRVILD------GIEIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETDSETFRNISK  180 (379)
Q Consensus       126 FG~a~~~~~------~~~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~  180 (379)
                      ||.+.....      ...+...+|||.|+||                   |+||++|.|+.|+.||.+....+++.+|..
T Consensus       254 FGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn  333 (576)
T KOG0585|consen  254 FGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVN  333 (576)
T ss_pred             cceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhc
Confidence            999987632      2245568999999999                   999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .++.||..  +.+.+.++|||.+||.+||.+|++..++..|||....-
T Consensus       334 ~pL~fP~~--pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g  379 (576)
T KOG0585|consen  334 DPLEFPEN--PEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDG  379 (576)
T ss_pred             CcccCCCc--ccccHHHHHHHHHHhhcChhheeehhhheecceeccCC
Confidence            99999865  36899999999999999999999999999999998653

>KOG0659|consensus

Probab=100.00  E-value=2.6e-41  Score=295.00  Aligned_cols=212  Identities=23%  Similarity=0.251  Sum_probs=175.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      .+.||+|.||.||+|++..||+.||++|+.-...    .-...|||+.|+.++||||+.+.+++..   +.+|+|| ..+
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~td   86 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMPTD   86 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecccc
Confidence            3589999999999999999999999776654422    2458999999999999999999998775   7899999 333


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      |...                     .++.|||.      +.|+||||||.|+|++++   +.+||+|||+|+.+..... 
T Consensus        87 Le~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~------~~IlHRDlKPnNLLis~~---g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   87 LEVVIKDKNIILSPADIKSYMLMTLKGLAYCHS------KWILHRDLKPNNLLISSD---GQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             HHHHhcccccccCHHHHHHHHHHHHHHHHHHHh------hhhhcccCCccceEEcCC---CcEEeecccchhccCCCCcc
Confidence            3333                     56666666      999999999999999986   9999999999998865443 


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC---------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP---------------  186 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~---------------  186 (379)
                      ....+-|.+|.||                |.|||+.||+.|.+-|.|.++.+++..|.+.--...               
T Consensus       158 ~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~  237 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVK  237 (318)
T ss_pred             cccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHH
Confidence            3334789999999                999999999999999999999999888855321111               


Q ss_pred             ---------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         187 ---------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       187 ---------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                               ...++..+.++.||+.+||..||.+|+|+.|+|+|+||+...
T Consensus       238 ~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P  288 (318)
T KOG0659|consen  238 IQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLP  288 (318)
T ss_pred             HhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCC
Confidence                     124456789999999999999999999999999999998743

>KOG0604|consensus

Probab=100.00  E-value=4.3e-42  Score=304.30  Aligned_cols=214  Identities=26%  Similarity=0.352  Sum_probs=191.9

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc-------ceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE-------PLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~-------~~~v~e~--   76 (379)
                      ...+||-|-.|.|..+.++.||+.+| .|+...  .....+|+++....+ |||||.++++++.       +.+|||.  
T Consensus        66 s~qvLG~GinGkV~~C~~k~T~ekfA-LKvL~D--s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~me  142 (400)
T KOG0604|consen   66 SWQVLGAGINGKVVQCVHKRTQEKFA-LKVLLD--SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECME  142 (400)
T ss_pred             hhhhhccccCCceEEEEeccchhhhH-HHHHhc--CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeeccc
Confidence            34599999999999999999999999 565544  466789999877776 9999999999875       6789999  


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      ||+||..                      .|++|||+      .+|.||||||+|+|+...++|..+||+|||+|+.-..
T Consensus       143 GGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~------~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~  216 (400)
T KOG0604|consen  143 GGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS------MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE  216 (400)
T ss_pred             chHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh------cchhhccCChhheeeecCCCCcceEecccccccccCC
Confidence            9999988                      67888888      9999999999999999998899999999999998766


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC----hHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET----DSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ...+.+.|-||+|.||               |+||++|.||+|.+||....    ......+|..|.+.||.+.|.++|+
T Consensus       217 ~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe  296 (400)
T KOG0604|consen  217 PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSE  296 (400)
T ss_pred             CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHH
Confidence            6678899999999999               99999999999999997643    3467789999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      .++|+|+++|..+|.+|.|++++++|||+.+...
T Consensus       297 ~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~  330 (400)
T KOG0604|consen  297 AAKDLIRKLLKTEPTERLTIEEVMDHPWINQYEA  330 (400)
T ss_pred             HHHHHHHHHhcCCchhheeHHHhhcCchhccccc
Confidence            9999999999999999999999999999987653

>KOG0694|consensus

Probab=100.00  E-value=4.7e-41  Score=326.63  Aligned_cols=213  Identities=21%  Similarity=0.288  Sum_probs=190.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecc------cccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERN------VSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~------~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      |||+|+||+|++|..+.|++.|| +|...      ..+.+.++.|.+|+...+ ||.++++|..+++   +|.+|||  |
T Consensus       375 vLGkGsFGkV~lae~k~~~e~yA-IK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~G  453 (694)
T KOG0694|consen  375 VLGRGSFGKVLLAELKGTNEYYA-IKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAG  453 (694)
T ss_pred             EeccCcCceEEEEEEcCCCcEEE-EEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCC
Confidence            99999999999999999999888 45443      356788999999999888 9999999999886   8999999  6


Q ss_pred             chhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCcc
Q psy6046          78 PPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIE  137 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~~  137 (379)
                      |+++..                   .||+|||.      +||||||||.+|||+|.+   |.+||+|||+++... .+..
T Consensus       454 gdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~------~~IIYRDlKLdNiLLD~e---Gh~kiADFGlcKe~m~~g~~  524 (694)
T KOG0694|consen  454 GDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHE------NGIIYRDLKLDNLLLDTE---GHVKIADFGLCKEGMGQGDR  524 (694)
T ss_pred             CcEEEEEecccccHHHHHHHHHHHHHHHHHHHh------cCceeeecchhheEEccc---CcEEecccccccccCCCCCc
Confidence            664433                   78999999      999999999999999997   999999999998765 5667


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ..++||||.||||               |+||++||||.|++||.|.+.++++..|....+.+|..    +|.++.++++
T Consensus       525 TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~----ls~ea~~il~  600 (694)
T KOG0694|consen  525 TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRF----LSKEAIAIMR  600 (694)
T ss_pred             cccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCc----ccHHHHHHHH
Confidence            8899999999999               99999999999999999999999999999999888874    8999999999


Q ss_pred             HhcccCCCCCCC-----HHHHhcCccccCCcccccccCC
Q psy6046         203 KILIKNPMERMT-----AKEALKHPWLMNKKQIMTRVGC  236 (379)
Q Consensus       203 ~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~~~~~  236 (379)
                      ++|.++|.+|..     ++++..||||+..+|.......
T Consensus       601 ~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L~~r~  639 (694)
T KOG0694|consen  601 RLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDDLLNRR  639 (694)
T ss_pred             HHhccCcccccCCCCCCchhhhhCCccccCCHHHHhhcc
Confidence            999999999994     6899999999999988665433

>KOG0600|consensus

Probab=100.00  E-value=1.3e-40  Score=313.21  Aligned_cols=215  Identities=18%  Similarity=0.172  Sum_probs=174.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC---
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP---   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~---   76 (379)
                      +.||+|+||.||+|++..||+.||++|+.-...    .....|||.||++|+||||+++.+++.+     +|+|+||   
T Consensus       123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh  202 (560)
T KOG0600|consen  123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH  202 (560)
T ss_pred             HHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc
Confidence            389999999999999999999999877764432    2347899999999999999999998654     8999999   


Q ss_pred             --Cch------hhHH-----HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--ccccc
Q psy6046          77 --RPP------VYQA-----SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EIREL  141 (379)
Q Consensus        77 --~g~------l~~~-----~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~~~~  141 (379)
                        .|-      -|..     .-.|.|+.+-+||++||+|||||++|||++.+   |.+||+|||+|+.+....  ..+..
T Consensus       203 DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~---G~LKiaDFGLAr~y~~~~~~~~T~r  279 (560)
T KOG0600|consen  203 DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNN---GVLKIADFGLARFYTPSGSAPYTSR  279 (560)
T ss_pred             hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCC---CCEEeccccceeeccCCCCcccccc
Confidence              121      1221     11233333333444999999999999999986   999999999999876443  57788


Q ss_pred             ccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-----------------
Q psy6046         142 LGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-----------------  188 (379)
Q Consensus       142 ~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-----------------  188 (379)
                      +-|.||.||                |+|||+.||++|++.|.|.+..++++.|.+-.-...+.                 
T Consensus       280 VvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~  359 (560)
T KOG0600|consen  280 VVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQ  359 (560)
T ss_pred             eEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCC
Confidence            899999999                99999999999999999999999999886533222221                 


Q ss_pred             --------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         189 --------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       189 --------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                              .+..++..+.+|+..||.+||.+|.||.++|.|+||..
T Consensus       360 ~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  360 PYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             cccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcCccccc
Confidence                    23456899999999999999999999999999999943

>KOG0663|consensus

Probab=100.00  E-value=1.6e-40  Score=298.34  Aligned_cols=210  Identities=18%  Similarity=0.181  Sum_probs=172.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccch----HHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC----
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGV----VIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP----   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~----~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~----   76 (379)
                      .|++|+||.||+|+++.|++.||++|.....+.+    ..+|||.+|.+++|||||.+-+++.     ++|+||||    
T Consensus        83 rI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~EhD  162 (419)
T KOG0663|consen   83 RIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEHD  162 (419)
T ss_pred             hcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHhh
Confidence            7999999999999999999999976665554432    4789999999999999999998754     49999999    


Q ss_pred             CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          77 RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        77 ~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      -.++.+.                  .|+.|||.      +.|+||||||+|+|++..   |.+||+|||+|+.+.+.- .
T Consensus       163 Lksl~d~m~q~F~~~evK~L~~QlL~glk~lH~------~wilHRDLK~SNLLm~~~---G~lKiaDFGLAR~ygsp~k~  233 (419)
T KOG0663|consen  163 LKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHD------NWILHRDLKTSNLLLSHK---GILKIADFGLAREYGSPLKP  233 (419)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHHHHHhh------ceeEecccchhheeeccC---CcEEecccchhhhhcCCccc
Confidence            1122221                  56677776      999999999999999987   999999999999986543 4


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL------------  189 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~------------  189 (379)
                      .+..+-|.||.||                |+|||+.||+++++.|.|.+..+++.+|.+---...+..            
T Consensus       234 ~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~  313 (419)
T KOG0663|consen  234 YTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKK  313 (419)
T ss_pred             CcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhc
Confidence            6667889999999                999999999999999999999999988855211111111            


Q ss_pred             --------------cc--CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         190 --------------FE--DISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       190 --------------~~--~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                    +.  .+|+...+|+.++|.+||.+|.||+|+|+|+||.+..
T Consensus       314 ~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  314 MTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETP  368 (419)
T ss_pred             cccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcccccccCC
Confidence                          11  2468999999999999999999999999999998754

>KOG0661|consensus

Probab=100.00  E-value=4.7e-41  Score=313.99  Aligned_cols=212  Identities=22%  Similarity=0.278  Sum_probs=177.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc----ceEEeeC-Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE----PLLGLNP-RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~----~~~v~e~-~g~l   80 (379)
                      -||.|+||.||+|+.+.+|+.||++|....   .+...=+||+..|++|+ ||||+++++++.+    +|+|||| .-.|
T Consensus        17 klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~NL   96 (538)
T KOG0661|consen   17 KLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDCNL   96 (538)
T ss_pred             HhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhhhH
Confidence            699999999999999999999886443332   22334579999999999 9999999998765    7899999 3333


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |+.                     .++.++|.      +|+.|||+||+|||+...   ..+||+|||+|+...+....+
T Consensus        97 YqLmK~R~r~fse~~irnim~QilqGL~hiHk------~GfFHRDlKPENiLi~~~---~~iKiaDFGLARev~SkpPYT  167 (538)
T KOG0661|consen   97 YQLMKDRNRLFSESDIRNIMYQILQGLAHIHK------HGFFHRDLKPENILISGN---DVIKIADFGLAREVRSKPPYT  167 (538)
T ss_pred             HHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHh------cCcccccCChhheEeccc---ceeEecccccccccccCCCcc
Confidence            333                     56777777      999999999999999963   799999999999998888899


Q ss_pred             ccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC-------------------CCC
Q psy6046         140 ELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-------------------QLD  184 (379)
Q Consensus       140 ~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~-------------------~~~  184 (379)
                      .++.|+||+||                ++|||++|+.+-++.|+|.+..+++.+|..-                   .+.
T Consensus       168 eYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~  247 (538)
T KOG0661|consen  168 EYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFR  247 (538)
T ss_pred             hhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccC
Confidence            99999999999                9999999999999999999988887777431                   122


Q ss_pred             CCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         185 FPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       185 ~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      +|.       ...+.+++++.+||.+||.+||.+||||+|+|+||||+.....
T Consensus       248 ~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~~~  300 (538)
T KOG0661|consen  248 FPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGRAS  300 (538)
T ss_pred             CCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCccccccccc
Confidence            221       2345689999999999999999999999999999999876533

>KOG0591|consensus

Probab=100.00  E-value=1.4e-41  Score=298.85  Aligned_cols=210  Identities=20%  Similarity=0.237  Sum_probs=174.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEec----ccccchHHHHHHHHHHhCCCCCcceeeee-cCc----ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKER----NVSQGVVIVDEEQLLKLIKVEPIEKYYSL-DPE----PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~----~~~~~~~~~~E~~il~~l~hpnIv~~~~~-~~~----~~~v~e~--   76 (379)
                      .+.||+|+||+||+|++..+|+.+|.+|+.    +.++++.+..|+.+|++|+|||||+||+. +.+    ++++|||  
T Consensus        24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~  103 (375)
T KOG0591|consen   24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCD  103 (375)
T ss_pred             HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhc
Confidence            348999999999999999999999954443    33556789999999999999999999983 322    8999999  


Q ss_pred             CchhhHH------------------HHHHHHhcccCCCC--CC--eEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA------------------SATTKAGSVLFPPL--MD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~------------------~al~~lh~~~~~h~--~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|+|...                  -..+.+..+..||.  ..  |+||||||.||+++..   |.+||+|||+++.+..
T Consensus       104 ~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~---gvvKLGDfGL~r~l~s  180 (375)
T KOG0591|consen  104 AGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTAN---GVVKLGDFGLGRFLSS  180 (375)
T ss_pred             ccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCC---CceeeccchhHhHhcc
Confidence            7887776                  22344444555665  44  9999999999999985   9999999999998876


Q ss_pred             Cc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-CCcccccCCCHHH
Q psy6046         135 GI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-FPDELFEDISPEA  197 (379)
Q Consensus       135 ~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~~~~s~~~  197 (379)
                      .. ...+++|||+||+|               |+||++|||+.-++||.|.+..++..+|.++.++ .|..   ..|.++
T Consensus       181 ~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~---~YS~~l  257 (375)
T KOG0591|consen  181 KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDE---HYSTDL  257 (375)
T ss_pred             hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHH---HhhhHH
Confidence            54 46779999999999               9999999999999999999999999999999775 3333   589999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+|..|+.+||..||+.     +|++.+..
T Consensus       258 ~~li~~ci~vd~~~RP~t-----~~~v~di~  283 (375)
T KOG0591|consen  258 RELINMCIAVDPEQRPDT-----VPYVQDIQ  283 (375)
T ss_pred             HHHHHHHccCCcccCCCc-----chHHHHHH
Confidence            999999999999999986     55655443

>KOG0658|consensus

Probab=100.00  E-value=1.7e-40  Score=302.34  Aligned_cols=213  Identities=23%  Similarity=0.321  Sum_probs=179.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc--------ceEEeeC-Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--------PLLGLNP-RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--------~~~v~e~-~g   78 (379)
                      .+++|+|+||.||+|....+++.+|++|........  .+|+++|+.+.|||||++..++..        ..+|+|| ..
T Consensus        29 ~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k--nrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~  106 (364)
T KOG0658|consen   29 VRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK--NRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE  106 (364)
T ss_pred             eEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC--cHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH
Confidence            349999999999999999999999988887664433  579999999999999998877542        4578888 33


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|+..                        .|+.|||.      .||+||||||+|+|+|.+  .+.+||||||.|+.+..
T Consensus       107 tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~------~~IcHRDIKPqNlLvD~~--tg~LKicDFGSAK~L~~  178 (364)
T KOG0658|consen  107 TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS------HGICHRDIKPQNLLVDPD--TGVLKICDFGSAKVLVK  178 (364)
T ss_pred             HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh------cCcccCCCChheEEEcCC--CCeEEeccCCcceeecc
Confidence            33333                        78999999      999999999999999987  69999999999999998


Q ss_pred             CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC----------------
Q psy6046         135 GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ----------------  182 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~----------------  182 (379)
                      ++...++..|++|+||                |.||+++||+-|++-|+|.+..+++..|.+--                
T Consensus       179 ~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~  258 (364)
T KOG0658|consen  179 GEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYT  258 (364)
T ss_pred             CCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccc
Confidence            8888899999999999                99999999999999999999888777663311                


Q ss_pred             -CCCC---cc-----cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         183 -LDFP---DE-----LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       183 -~~~~---~~-----~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                       ..+|   ..     .....++++.+|+.++|..+|.+|.++.|++.||||...+..
T Consensus       259 ~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  259 EFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             cccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence             1111   11     335679999999999999999999999999999999887654

>KOG0198|consensus

Probab=100.00  E-value=4.9e-40  Score=303.85  Aligned_cols=212  Identities=24%  Similarity=0.356  Sum_probs=173.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc---chHHHHHHHHHHhCCCCCcceeeee---cC--cceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ---GVVIVDEEQLLKLIKVEPIEKYYSL---DP--EPLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~---~~~~~~E~~il~~l~hpnIv~~~~~---~~--~~~~v~e~--   76 (379)
                      .+.+||+|+||.||++.+..+|..+| +|......   .+.+.+|+.+|+.|+|||||++++.   .+  .+++.|||  
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~A-vK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~   99 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMA-VKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAP   99 (313)
T ss_pred             hhccccCccceEEEEEEecCCCccee-eeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccC
Confidence            34599999999999999999998888 55555444   4569999999999999999999995   22  28899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                      +|++.+.                     .++.|||+      +||+||||||+|||++..  ++.+||+|||+++.... 
T Consensus       100 ~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs------~g~vH~DiK~~NiLl~~~--~~~~KlaDFG~a~~~~~~  171 (313)
T KOG0198|consen  100 GGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHS------KGIVHCDIKPANILLDPS--NGDVKLADFGLAKKLESK  171 (313)
T ss_pred             CCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeccCcccceEEEeCC--CCeEEeccCccccccccc
Confidence            6666654                     67888888      999999999999999983  37999999999987653 


Q ss_pred             ---CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         135 ---GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       135 ---~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                         ........||+.||||                |+||++.||+||++||.. ....+.+-.+.... ..| .++..+|
T Consensus       172 ~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~-~~P-~ip~~ls  249 (313)
T KOG0198|consen  172 GTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGRED-SLP-EIPDSLS  249 (313)
T ss_pred             cccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccC-CCC-CCCcccC
Confidence               1234457899999999                999999999999999987 44444444454443 222 4445699


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      +++++||.+||..||.+||||+++|+|||.++...
T Consensus       250 ~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  250 DEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             HHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence            99999999999999999999999999999987653

>KOG0580|consensus

Probab=100.00  E-value=2.7e-40  Score=284.78  Aligned_cols=204  Identities=29%  Similarity=0.426  Sum_probs=182.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc------chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ------GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~------~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      +..||+|-||.||+|+.+.++..+| +|+.-.++      ..++.+|++|...|+||||.++|+++.+   .|+++||  
T Consensus        27 gr~LgkgkFG~vYlarekks~~Iva-lKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~  105 (281)
T KOG0580|consen   27 GRPLGKGKFGNVYLAREKKSLFIVA-LKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAP  105 (281)
T ss_pred             cccccCCccccEeEeeeccCCcEEE-EeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecC
Confidence            3489999999999999999998888 66655433      3569999999999999999999999887   8999999  


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|++|..                      .|+.|+|.      .+|+||||||+|+|++..   +.+||+|||.+...+ 
T Consensus       106 ~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~------k~VIhRdiKpenlLlg~~---~~lkiAdfGwsV~~p-  175 (281)
T KOG0580|consen  106 RGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHL------KRVIHRDIKPENLLLGSA---GELKIADFGWSVHAP-  175 (281)
T ss_pred             CchHHHHHHhcccccccccchhHHHHHHHHHHHHhcc------CCcccCCCCHHHhccCCC---CCeeccCCCceeecC-
Confidence            8888887                      45666666      999999999999999986   899999999997765 


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      ...-.+.|||..|.+|               ++|+..||++.|.+||...+..+.+++|.+..+.+|.    .+|.++.|
T Consensus       176 ~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~----~is~~a~d  251 (281)
T KOG0580|consen  176 SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPS----TISGGAAD  251 (281)
T ss_pred             CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCc----ccChhHHH
Confidence            4456789999999999               9999999999999999999999999999999998885    58999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      ||.+||..+|.+|.+..|++.|||+..
T Consensus       252 lI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  252 LISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             HHHHHhccCccccccHHHHhhhHHHHh
Confidence            999999999999999999999999964

>KOG4717|consensus

Probab=100.00  E-value=9.5e-40  Score=307.13  Aligned_cols=216  Identities=22%  Similarity=0.321  Sum_probs=193.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+-||+|.|.+|-+|+|.-||+.|| +|+++...     ..++.+|++.|+.++|||||++|+++..   +|++.|+  +
T Consensus        23 ekTlG~GHFAVVKLArHVFTGekVA-VKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~  101 (864)
T KOG4717|consen   23 EKTLGRGHFAVVKLARHVFTGEKVA-VKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG  101 (864)
T ss_pred             hhhhcCCceehhhhhhhhcccceeE-EEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence            3479999999999999999999988 67766533     3569999999999999999999999765   9999999  8


Q ss_pred             chhhHH---------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccc
Q psy6046          78 PPVYQA---------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL  142 (379)
Q Consensus        78 g~l~~~---------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~  142 (379)
                      |+||++               -..+.+|.+-+||+..+|||||||+|+++-+.  -|-+||+|||++..+..+..+.+.|
T Consensus       102 GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEK--lGlVKLTDFGFSNkf~PG~kL~TsC  179 (864)
T KOG4717|consen  102 GDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEK--LGLVKLTDFGFSNKFQPGKKLTTSC  179 (864)
T ss_pred             chHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeee--cCceEeeeccccccCCCcchhhccc
Confidence            999999               22445566666777999999999999998876  5899999999999999999999999


Q ss_pred             cCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         143 GTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       143 gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      |+..|.||                |||||+|.|.+|++||...++.+.+..|....+..|.    .+|.+|+|||..||.
T Consensus       180 GSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPs----hvS~eCrdLI~sMLv  255 (864)
T KOG4717|consen  180 GSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPS----HVSKECRDLIQSMLV  255 (864)
T ss_pred             chhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCch----hhhHHHHHHHHHHHh
Confidence            99999999                9999999999999999999999999999999998886    489999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCccc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      .||++|.|.+++..|+|++.....
T Consensus       256 RdPkkRAslEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  256 RDPKKRASLEEIVSTSWLQAGDRG  279 (864)
T ss_pred             cCchhhccHHHHhccccccCCCCC
Confidence            999999999999999999977643

>KOG0611|consensus

Probab=100.00  E-value=1.1e-39  Score=299.23  Aligned_cols=209  Identities=23%  Similarity=0.324  Sum_probs=182.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc------cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN------VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +-||+|+||.|-+|.+...|+.||+ |.+.      ..+.-++.+||+||..|+||||+.+|++|+.   +.++|||  +
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAi-KsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~  137 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAI-KSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASG  137 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeeh-hhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCC
Confidence            3799999999999999999999995 4332      2334568999999999999999999999986   8999999  9


Q ss_pred             chhhHH----------HH----HHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          78 PPVYQA----------SA----TTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        78 g~l~~~----------~a----l~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                      |+||++          .|    .+....+.+||+++++|||||.+|||++.   |+.+||+|||++..+.++..++++||
T Consensus       138 GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~---N~NiKIADFGLSNly~~~kfLqTFCG  214 (668)
T KOG0611|consen  138 GELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQ---NNNIKIADFGLSNLYADKKFLQTFCG  214 (668)
T ss_pred             ccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecC---CCCeeeeccchhhhhccccHHHHhcC
Confidence            999999          11    12222233344499999999999999998   49999999999999988889999999


Q ss_pred             CCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         144 TPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       144 t~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      +|.|.+|                ||||++|.|..|..||.|.+...+..+|.+|.+.-|.     -+.++.-||+-||.+
T Consensus       215 SPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~-----~PSdA~gLIRwmLmV  289 (668)
T KOG0611|consen  215 SPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPE-----TPSDASGLIRWMLMV  289 (668)
T ss_pred             CcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCC-----CCchHHHHHHHHHhc
Confidence            9999999                9999999999999999999999999999999988775     478899999999999


Q ss_pred             CCCCCCCHHHHhcCccccC
Q psy6046         208 NPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~  226 (379)
                      ||.+|.|++++-.|=|+.-
T Consensus       290 NP~RRATieDiAsHWWvNw  308 (668)
T KOG0611|consen  290 NPERRATIEDIASHWWVNW  308 (668)
T ss_pred             CcccchhHHHHhhhheeec
Confidence            9999999999999988753

>KOG0578|consensus

Probab=100.00  E-value=3.8e-39  Score=307.61  Aligned_cols=205  Identities=21%  Similarity=0.302  Sum_probs=175.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeec---CcceEEeeC--Cchhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLD---PEPLLGLNP--RPPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~---~~~~~v~e~--~g~l~   81 (379)
                      -||+|+-|.||.|+...+++.||+ |.++.   ...+.+++|+.+|+.++|||||++++.+   .++|++|||  +|.|.
T Consensus       280 kigqgaSG~vy~A~~~~~~~~Vai-K~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLT  358 (550)
T KOG0578|consen  280 KIGQGATGGVYVARKISTKQEVAI-KRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLT  358 (550)
T ss_pred             hhccccccceeeeeeccCCceEEE-EEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchh
Confidence            699999999999999999999885 44443   3356799999999999999999998753   459999999  78776


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      +.                   .||.|||.      +||+|||||.+|||++.+   +.+||+|||+|..+.... .-.+.
T Consensus       359 DvVt~~~~~E~qIA~Icre~l~aL~fLH~------~gIiHrDIKSDnILL~~~---g~vKltDFGFcaqi~~~~~KR~Tm  429 (550)
T KOG0578|consen  359 DVVTKTRMTEGQIAAICREILQGLKFLHA------RGIIHRDIKSDNILLTMD---GSVKLTDFGFCAQISEEQSKRSTM  429 (550)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHHHHh------cceeeeccccceeEeccC---CcEEEeeeeeeeccccccCccccc
Confidence            66                   45666666      999999999999999997   889999999999887655 45678


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC-CCCCCcccccCCCHHHHHHHHHhc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-QLDFPDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~s~~~~~li~~~L  205 (379)
                      +|||+||||               |||+++.||..|.+||...++...+..|... ...+.  .+..+|+.++|||.+||
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk--~~~klS~~~kdFL~~cL  507 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLK--NPEKLSPELKDFLDRCL  507 (550)
T ss_pred             cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcC--CccccCHHHHHHHHHHh
Confidence            999999999               9999999999999999988887777777654 33322  23579999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccC
Q psy6046         206 IKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      +.|+.+|++|.|+|+||||+.
T Consensus       508 ~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  508 VVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             hcchhcCCCHHHHhcChhhhh
Confidence            999999999999999999953

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.1e-38  Score=300.85  Aligned_cols=209  Identities=24%  Similarity=0.335  Sum_probs=177.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAM-KILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            699999999999999999999885 44332      223567889999999999999999887654   8999999  77


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCcc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIE  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~~  137 (379)
                      +|+..                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++... ....
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~ivHrDlkp~NIll~~~---~~~kl~DfG~a~~~~~~~~~  151 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHS------CDVVYRDLKLENLMLDKD---GHIKITDFGLCKEGISDGAT  151 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEeCCCCHHHEEECCC---CCEEEeeCCCCcccccCCCc
Confidence            77655                    56777777      999999999999999875   889999999997642 2233


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|..||.+.+.......+..+...+|.    .+++++.+||.
T Consensus       152 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~li~  227 (323)
T cd05571         152 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR----TLSPEAKSLLA  227 (323)
T ss_pred             ccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHHHH
Confidence            4557899999999               9999999999999999998888888888877766664    58999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +||..||++||     ++.++++||||....+...
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~~~~~  262 (323)
T cd05571         228 GLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDV  262 (323)
T ss_pred             HHccCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHH
Confidence            99999999999     8999999999998766544

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0607|consensus

Probab=100.00  E-value=6.5e-39  Score=286.31  Aligned_cols=217  Identities=24%  Similarity=0.389  Sum_probs=190.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +++||+|+|+.|--+....||.+|| +|+++.   ..+.++.+|++++..++ |+||+++++++++   +|+|+|-  +|
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYA-VKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GG  161 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYA-VKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGG  161 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhh-hhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCc
Confidence            4699999999999999999999999 677665   34678999999999998 9999999999887   8999999  88


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc----
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD----  134 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~----  134 (379)
                      .+.+.                    .|+.+||.      +||.||||||+|||-.+.+.-.-+|||||.+...+.-    
T Consensus       162 plLshI~~~~~F~E~EAs~vvkdia~aLdFlH~------kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~  235 (463)
T KOG0607|consen  162 PLLSHIQKRKHFNEREASRVVKDIASALDFLHT------KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDC  235 (463)
T ss_pred             hHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhh------cCcccccCCccceeecCCCCcCceeeeccccccccccCCCC
Confidence            88877                    67888888      9999999999999998875556799999999865431    


Q ss_pred             ----CccccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCC---------------hHHHH
Q psy6046         135 ----GIEIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGET---------------DSETF  175 (379)
Q Consensus       135 ----~~~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~---------------~~~~~  175 (379)
                          ...+.+.+|+..||||                    |||+|+|.||+|++||.|.-               ...++
T Consensus       236 spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LF  315 (463)
T KOG0607|consen  236 SPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLF  315 (463)
T ss_pred             CCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHH
Confidence                2235668999999999                    99999999999999997532               14578


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      ..|..|.+.||+..|..+|.+++|+++.+|..||.+|.++.++++|||+.....+.
T Consensus       316 esIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~ek  371 (463)
T KOG0607|consen  316 ESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPEK  371 (463)
T ss_pred             HHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCccccccchhc
Confidence            88999999999999999999999999999999999999999999999998877553

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.6e-38  Score=310.43  Aligned_cols=212  Identities=20%  Similarity=0.236  Sum_probs=167.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc-----------ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~v~e~   76 (379)
                      ..+||+|+||.||+|.+..+++.||+++....  .....+|+.+|+.++||||+++++++..           ++++|||
T Consensus        71 ~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~--~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~  148 (440)
T PTZ00036         71 GNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD--PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEF  148 (440)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEecC--cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEec
Confidence            34899999999999999999999996555332  2345689999999999999998775421           5689999


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       .|.++..                        .|+.|||+      +||+||||||+|||++.+  .+.+||+|||+|+.
T Consensus       149 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~------~~IiHrDLKp~NILl~~~--~~~vkL~DFGla~~  220 (440)
T PTZ00036        149 IPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS------KFICHRDLKPQNLLIDPN--THTLKLCDFGSAKN  220 (440)
T ss_pred             CCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCcCHHHEEEcCC--CCceeeeccccchh
Confidence             4444322                        56777777      999999999999999865  35799999999987


Q ss_pred             eccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC-------------
Q psy6046         132 ILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ-------------  182 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~-------------  182 (379)
                      ..........+||+.|+||                |+||++|+|++|.+||.+.+..+.+..+....             
T Consensus       221 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  300 (440)
T PTZ00036        221 LLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNP  300 (440)
T ss_pred             ccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhch
Confidence            7655555667899999999                99999999999999999887766665554311             


Q ss_pred             ----CCCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         183 ----LDFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       183 ----~~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                          ..+|.        ......|+++++||.+||..||.+|||+.|+|.||||.....
T Consensus       301 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        301 NYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             hhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence                11111        011246889999999999999999999999999999987654

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.1e-38  Score=299.69  Aligned_cols=207  Identities=21%  Similarity=0.305  Sum_probs=177.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+++.++||||+++++.+.+   .|++|||  
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  101 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGTGEYYAI-KCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVV  101 (329)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEE-EEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCC
Confidence            34899999999999999999998884 44332      234568899999999999999999988764   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++..... 
T Consensus       102 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~dlkp~NIll~~~---~~~kl~Dfg~~~~~~~~-  171 (329)
T PTZ00263        102 GGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHS------KDIIYRDLKPENLLLDNK---GHVKVTDFGFAKKVPDR-  171 (329)
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCHHHEEECCC---CCEEEeeccCceEcCCC-
Confidence            6777655                    56777777      999999999999999975   89999999999876433 


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                       ....+||+.|+||               |+||++|+|++|..||.+.+..+....+..+...+|.    .+++.+++||
T Consensus       172 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~li  246 (329)
T PTZ00263        172 -TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPN----WFDGRARDLV  246 (329)
T ss_pred             -cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCC----CCCHHHHHHH
Confidence             3356899999999               9999999999999999999888888888888776664    4789999999


Q ss_pred             HHhcccCCCCCCC-----HHHHhcCccccCCccc
Q psy6046         202 AKILIKNPMERMT-----AKEALKHPWLMNKKQI  230 (379)
Q Consensus       202 ~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~  230 (379)
                      .+||..||.+||+     +++++.||||.+..+.
T Consensus       247 ~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~~~~  280 (329)
T PTZ00263        247 KGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWD  280 (329)
T ss_pred             HHHhhcCHHHcCCCCCCCHHHHhcCCccCCCCHH
Confidence            9999999999996     7999999999876554

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1e-37  Score=291.31  Aligned_cols=211  Identities=20%  Similarity=0.213  Sum_probs=166.6

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      +-..+.||+|+||.||+|++..++..||++.....   .....+.+|+.+++.++||||+++++++.+   .|+++|| .
T Consensus         7 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   86 (288)
T cd07871           7 YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD   86 (288)
T ss_pred             ceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC
Confidence            33456899999999999999999998885333221   223467899999999999999999998664   7899999 5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |.+.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus        87 ~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~dlkp~Nil~~~~---~~~kl~DfG~~~~~~~~~  157 (288)
T cd07871          87 SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHK------RKILHRDLKPQNLLINEK---GELKLADFGLARAKSVPT  157 (288)
T ss_pred             cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEECCC---CCEEECcCcceeeccCCC
Confidence            555443                     56777777      999999999999999875   899999999997653322


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC---------------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD---------------  184 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~---------------  184 (379)
                       ......+++.|+||                |+||++|+|++|++||.+.+..+.+..+......               
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd07871         158 KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEF  237 (288)
T ss_pred             ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhh
Confidence             23445788999999                9999999999999999988877666555332111               


Q ss_pred             ----CCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 ----FPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ----~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                          +|.       ...+.+++++++||.+||..||.+|||++|+++||||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         238 RSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             hccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence                110       0123568899999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0690|consensus

Probab=100.00  E-value=5.6e-39  Score=287.34  Aligned_cols=211  Identities=24%  Similarity=0.310  Sum_probs=190.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecc------cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERN------VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|.||.|-+++.+.||+.|| +|++.      ..+..+.+.|-++|+..+||.+..+.+.++.   +|.||||  +|
T Consensus       175 vLGkGTFGKVIL~rEKat~k~YA-iKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGG  253 (516)
T KOG0690|consen  175 VLGKGTFGKVILCREKATGKLYA-IKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGG  253 (516)
T ss_pred             HhcCCccceEEEEeecccCceee-hhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCc
Confidence            89999999999999999999999 44433      3456778899999999999999998887764   8999999  88


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee-eccCcc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIE  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~-~~~~~~  137 (379)
                      +||-.                    +|+.|||+      ++||+||||.+|++++.+   |++||+|||+++. +..+..
T Consensus       254 eLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs------~~ivYRDlKLENLlLDkD---GHIKitDFGLCKE~I~~g~t  324 (516)
T KOG0690|consen  254 ELFFHLSRERVFSEDRTRFYGAEIVSALGYLHS------RNIVYRDLKLENLLLDKD---GHIKITDFGLCKEEIKYGDT  324 (516)
T ss_pred             eEeeehhhhhcccchhhhhhhHHHHHHhhhhhh------CCeeeeechhhhheeccC---CceEeeecccchhcccccce
Confidence            88765                    78999999      999999999999999997   9999999999986 445667


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ..++||||.|.||               .+||++|||++|+.||...+...++..|....+.||.    .+|++++.|+.
T Consensus       325 ~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr----~ls~eAktLLs  400 (516)
T KOG0690|consen  325 TKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPR----TLSPEAKTLLS  400 (516)
T ss_pred             eccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCc----cCCHHHHHHHH
Confidence            8899999999999               9999999999999999999999999999999999997    48999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCccccccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~~~  234 (379)
                      ++|..||++|.     .+.|+.+|+||...+|.....
T Consensus       401 GLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~  437 (516)
T KOG0690|consen  401 GLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYR  437 (516)
T ss_pred             HHhhcChHhhcCCCchhHHHHHhhhhhccCCHHHHHH
Confidence            99999999998     589999999999999886543

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-37  Score=294.01  Aligned_cols=206  Identities=24%  Similarity=0.383  Sum_probs=174.4

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ||+|+||.||+|++..+++.||+ |....      .....+.+|+.+++.++||||+++++.+.+   .|+++||  +|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~ai-K~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYAL-KTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            79999999999999999998885 44322      233567889999999999999999887654   8999999  777


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      |...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++..... ...
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~HrDlkp~Nili~~~---~~~kl~Dfg~~~~~~~~~~~~  150 (312)
T cd05585          80 LFHHLQREGRFDLSRARFYTAELLCALENLHK------FNVIYRDLKPENILLDYQ---GHIALCDFGLCKLNMKDDDKT  150 (312)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEeCCCCHHHeEECCC---CcEEEEECcccccCccCCCcc
Confidence            7655                    56777777      999999999999999875   89999999999764322 234


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...+||+.|+||               |+||++|+|++|++||.+.+..+....+..+...+|.    .+++++.+||.+
T Consensus       151 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~  226 (312)
T cd05585         151 NTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPD----GFDRDAKDLLIG  226 (312)
T ss_pred             ccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCC----cCCHHHHHHHHH
Confidence            456799999999               9999999999999999998888888888887766664    589999999999


Q ss_pred             hcccCCCCCC---CHHHHhcCccccCCccc
Q psy6046         204 ILIKNPMERM---TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       204 ~L~~dP~~Rp---t~~e~l~hp~~~~~~~~  230 (379)
                      ||..||.+||   ++.+++.||||.+..+.
T Consensus       227 ~L~~dp~~R~~~~~~~e~l~hp~~~~~~~~  256 (312)
T cd05585         227 LLSRDPTRRLGYNGAQEIKNHPFFSQLSWK  256 (312)
T ss_pred             HcCCCHHHcCCCCCHHHHHcCCCcCCCCHH
Confidence            9999999997   58999999999876543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-38  Score=292.44  Aligned_cols=209  Identities=21%  Similarity=0.355  Sum_probs=178.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|.+..+|+.+|+ |....      ...+.+.+|+.+++.++||||+++++++.+   +|++||| 
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   83 (291)
T cd05612           5 RIKTVGTGTFGRVHLVRDRISEHYYAL-KVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYV   83 (291)
T ss_pred             eeeeeecCCCeEEEEEEEcCCCCEEEE-EEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCC
Confidence            345899999999999999999998884 44432      234568899999999999999999988765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~NIli~~~---~~~kl~Dfg~~~~~~~~  154 (291)
T cd05612          84 PGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHS------KEIVYRDLKPENILLDKE---GHIKLTDFGFAKKLRDR  154 (291)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCHHHeEECCC---CCEEEEecCcchhccCC
Confidence             6777665                    56677777      999999999999999875   89999999999765432


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                        ....+||+.|+||               |+||++|+|++|+.||.+.+..+....+..+...+|.    .+++.+++|
T Consensus       155 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~l  228 (291)
T cd05612         155 --TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPR----HLDLYAKDL  228 (291)
T ss_pred             --cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCc----cCCHHHHHH
Confidence              3346799999999               9999999999999999999988889999888777665    468999999


Q ss_pred             HHHhcccCCCCCCC-----HHHHhcCccccCCcccc
Q psy6046         201 IAKILIKNPMERMT-----AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       201 i~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~  231 (379)
                      |++||..||.+||+     +++++.||||....+..
T Consensus       229 i~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~  264 (291)
T cd05612         229 IKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDD  264 (291)
T ss_pred             HHHHcCCCHHHccCCccCCHHHHhcCccccCCCHHH
Confidence            99999999999995     99999999998876654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0582|consensus

Probab=100.00  E-value=1.2e-37  Score=289.32  Aligned_cols=213  Identities=23%  Similarity=0.240  Sum_probs=180.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecC---cceEEeeC--C
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDP---EPLLGLNP--R   77 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~---~~~~v~e~--~   77 (379)
                      +.++||.|.-++||+|++..+++.|| +|+.+...    ...+.+|+..|+.++||||++++..|.   ++|+||.|  +
T Consensus        30 L~e~IG~G~sa~V~~A~c~p~~e~VA-IK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~  108 (516)
T KOG0582|consen   30 LQEVIGVGASAVVYLARCIPTNEVVA-IKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAG  108 (516)
T ss_pred             EEEEEeccceeEeeeeeecccCCEEE-EEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcC
Confidence            34599999999999999999995555 78777643    366999999999999999999988754   49999999  8


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                      |++++.                      .|+.|||.      +|.||||||+.|||++++   |.|||+|||.+..+.+ 
T Consensus       109 GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~------~G~IHRdvKAgnILi~~d---G~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  109 GSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQ------NGHIHRDVKAGNILIDSD---GTVKLADFGVSASLFDS  179 (516)
T ss_pred             CcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh------cCceecccccccEEEcCC---CcEEEcCceeeeeeccc
Confidence            888887                      78999999      999999999999999997   9999999999876543 


Q ss_pred             Ccc----ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC------Cc
Q psy6046         135 GIE----IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF------PD  187 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~------~~  187 (379)
                      +..    .++++|||+||||                 |+|++..||.+|..||....+.+++..-.++.++.      +.
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~  259 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDK  259 (516)
T ss_pred             CceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCCh
Confidence            221    2567999999999                 99999999999999999888877666655555542      23


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      .....++..++.+|..||..||.+|||++++|+|+||+....
T Consensus       260 d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k~  301 (516)
T KOG0582|consen  260 DEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAKS  301 (516)
T ss_pred             HHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhccc
Confidence            334567888999999999999999999999999999987653

>KOG0594|consensus

Probab=100.00  E-value=1.9e-37  Score=282.56  Aligned_cols=211  Identities=21%  Similarity=0.237  Sum_probs=170.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCC-cceeeeecCc---------ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEP-IEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpn-Iv~~~~~~~~---------~~~v~e   75 (379)
                      .||+|+||+||+|+++.+|+.||++|+.-..+    -....+|+.+|+.|+|+| ||.+++++..         +++++|
T Consensus        18 klGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe   97 (323)
T KOG0594|consen   18 KLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFE   97 (323)
T ss_pred             HhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEE
Confidence            69999999999999999999999766654433    245799999999999999 9999998543         678999


Q ss_pred             C-CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          76 P-RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        76 ~-~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      | .-++-.+                        .|+.|||+      +||+||||||+|||++++   +.+||+|||+|+
T Consensus        98 ~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~------~~IlHRDLKPQNlLi~~~---G~lKlaDFGlAr  168 (323)
T KOG0594|consen   98 FLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS------HGILHRDLKPQNLLISSS---GVLKLADFGLAR  168 (323)
T ss_pred             eecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh------CCeecccCCcceEEECCC---CcEeeeccchHH
Confidence            9 1111110                        66777777      999999999999999996   999999999999


Q ss_pred             eec-cCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC---------
Q psy6046         131 VIL-DGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD---------  184 (379)
Q Consensus       131 ~~~-~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~---------  184 (379)
                      .+. ........++|.+|.||                |+|||++||+++++.|.|.+..+++..|.+.--.         
T Consensus       169 a~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v  248 (323)
T KOG0594|consen  169 AFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGV  248 (323)
T ss_pred             HhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCc
Confidence            765 33346667899999999                9999999999999999999998888887542111         


Q ss_pred             ---------CCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         185 ---------FPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       185 ---------~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                               ++.        ...+..++++.+++.+||+.+|++|.|+..+|.||||.....
T Consensus       249 ~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~  310 (323)
T KOG0594|consen  249 SSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPE  310 (323)
T ss_pred             cccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccccc
Confidence                     111        111334568999999999999999999999999999987753

>KOG0610|consensus

Probab=100.00  E-value=3e-37  Score=284.40  Aligned_cols=213  Identities=24%  Similarity=0.345  Sum_probs=188.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc------chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ------GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~------~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .||.|.-|+||+|..+.++..+| +|+++...      ..++..|.+||..++||.+..+|..++.   .|++|||  ||
T Consensus        84 ~LG~GdiG~VyL~~l~~t~~~fA-mKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGG  162 (459)
T KOG0610|consen   84 RLGCGDIGTVYLVELRGTNCLFA-MKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGG  162 (459)
T ss_pred             HcCCCCceeEEEEEecCCCceEE-EEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCc
Confidence            79999999999999999998888 78776633      3457889999999999999999999876   8999999  89


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc--
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD--  134 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~--  134 (379)
                      +|+..                      .|+.|||-      .|||+|||||+|||+-++   |++.|+||.++.....  
T Consensus       163 dL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm------lGivYRDLKPENILvred---GHIMLsDFDLS~~~~~~P  233 (459)
T KOG0610|consen  163 DLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM------LGIVYRDLKPENILVRED---GHIMLSDFDLSLRCPVSP  233 (459)
T ss_pred             cHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh------hceeeccCCcceeEEecC---CcEEeeeccccccCCCCC
Confidence            98887                      78999999      999999999999999997   9999999999864310  


Q ss_pred             ---------------------------------C----------------------ccccccccCCCCcch---------
Q psy6046         135 ---------------------------------G----------------------IEIRELLGTPDYVGK---------  150 (379)
Q Consensus       135 ---------------------------------~----------------------~~~~~~~gt~~y~aP---------  150 (379)
                                                       .                      ....+++||-.|.||         
T Consensus       234 t~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHg  313 (459)
T KOG0610|consen  234 TLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHG  313 (459)
T ss_pred             eeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCC
Confidence                                             0                      011347899999999         


Q ss_pred             ------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCC----HHHHhc
Q psy6046         151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT----AKEALK  220 (379)
Q Consensus       151 ------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt----~~e~l~  220 (379)
                            ++||.+||||.|..||.|.+..+.+.+|....+.||...  .+|..++|||+++|.+||.+|..    |.||.+
T Consensus       314 sAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~--~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  314 SAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEP--EVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             chhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCC--cchhHHHHHHHHHhccChhhhhccccchHHhhc
Confidence                  999999999999999999999999999999999998763  78899999999999999999997    999999


Q ss_pred             CccccCCccccccc
Q psy6046         221 HPWLMNKKQIMTRV  234 (379)
Q Consensus       221 hp~~~~~~~~~~~~  234 (379)
                      ||||++.+|...+.
T Consensus       392 HpFF~gVnWaLir~  405 (459)
T KOG0610|consen  392 HPFFEGVNWALIRC  405 (459)
T ss_pred             CccccCCChhheec
Confidence            99999999996544

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.1e-37  Score=288.80  Aligned_cols=211  Identities=20%  Similarity=0.250  Sum_probs=168.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|.+..+|+.||++.....     .....+.+|+.+++.++||+|+++++.+.+   +|+++||  +|
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g   85 (285)
T cd05631           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGG   85 (285)
T ss_pred             EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCC
Confidence            4799999999999999999999885433221     122357889999999999999999987665   8999999  66


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|...                      .|+.|||+      .||+||||||+|||++++   +.+||+|||++.......
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~iiH~dikp~Nill~~~---~~~kl~Dfg~~~~~~~~~  156 (285)
T cd05631          86 DLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR------ERIVYRDLKPENILLDDR---GHIRISDLGLAVQIPEGE  156 (285)
T ss_pred             cHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCEEeCCCCHHHEEECCC---CCEEEeeCCCcEEcCCCC
Confidence            66432                      45666666      999999999999999875   889999999998765554


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHH----HHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSE----TFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ......||+.|+||               |+||++|+|++|+.||.+.....    ....+......    ....+|+++
T Consensus       157 ~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~  232 (285)
T cd05631         157 TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEE----YSEKFSEDA  232 (285)
T ss_pred             eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhccccc----CCccCCHHH
Confidence            45567899999999               99999999999999998765432    22233333222    334689999


Q ss_pred             HHHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         198 KDFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      .+||.+||..||.+||+     ++++++||||.+.++...
T Consensus       233 ~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~  272 (285)
T cd05631         233 KSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRL  272 (285)
T ss_pred             HHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHHH
Confidence            99999999999999997     899999999998775543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.5e-37  Score=294.14  Aligned_cols=208  Identities=22%  Similarity=0.310  Sum_probs=175.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAM-KILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            689999999999999999999885 44332      233567899999999999999999887654   8999999  67


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Ccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GIE  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~~  137 (379)
                      .++..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... ...
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivHrDikp~NIll~~~---~~~kL~DfG~~~~~~~~~~~  151 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHS------GKIVYRDLKLENLMLDKD---GHIKITDFGLCKEGITDAAT  151 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEecccCHHHeEECCC---CcEEEecCcCCccCCCcccc
Confidence            77654                    56677776      999999999999999975   8999999999876432 223


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+||.
T Consensus       152 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~li~  227 (328)
T cd05593         152 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPR----TLSADAKSLLS  227 (328)
T ss_pred             cccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCC----CCCHHHHHHHH
Confidence            4456899999999               9999999999999999988888888888777666654    58999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      +||..||.+|+     ++.++++||||....+..
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~  261 (328)
T cd05593         228 GLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQD  261 (328)
T ss_pred             HHcCCCHHHcCCCCCCCHHHHhcCCCcCCCCHHH
Confidence            99999999997     899999999998876543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.2e-37  Score=295.92  Aligned_cols=208  Identities=22%  Similarity=0.313  Sum_probs=175.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCc-EEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR-EVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~-~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..||+|+||.||+|.+..++. .|| +|....      ...+.+.+|+.+++.++||||+++++++.+   +|++|||  
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~  114 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVA-IKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVI  114 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEE-EEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCC
Confidence            489999999999999877764 455 554432      234568899999999999999999998765   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|+..                    .|+.|||+      .||+||||||+|||++.+   +.+||+|||+++....  
T Consensus       115 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDLkp~NILl~~~---~~ikL~DFG~a~~~~~--  183 (340)
T PTZ00426        115 GGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQS------LNIVYRDLKPENLLLDKD---GFIKMTDFGFAKVVDT--  183 (340)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEccCCCHHHEEECCC---CCEEEecCCCCeecCC--
Confidence            6777655                    56677777      999999999999999875   8999999999987533  


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|.+||.+.+.......+..+...+|.    .+++.+.++|
T Consensus       184 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~li  259 (340)
T PTZ00426        184 RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPK----FLDNNCKHLM  259 (340)
T ss_pred             CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHHH
Confidence            23456899999999               9999999999999999999888888888888776664    4799999999


Q ss_pred             HHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         202 AKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       202 ~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      ++||..||.+|+     |++++++||||.+..|...
T Consensus       260 ~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~  295 (340)
T PTZ00426        260 KKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSL  295 (340)
T ss_pred             HHHcccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHH
Confidence            999999999996     8999999999998776543

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=3.3e-37  Score=292.70  Aligned_cols=210  Identities=24%  Similarity=0.334  Sum_probs=176.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +||+|+||.||+|++..+|+.||++.....     .....+.+|+.+++.++||||+++++.+.+   +|++|||  +|+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~   81 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGE   81 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCc
Confidence            699999999999999999999885433221     223457789999999999999999887654   8999999  677


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GIEI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~~~  138 (379)
                      |+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++..... ....
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kL~Dfg~~~~~~~~~~~~  152 (323)
T cd05595          82 LFFHLSRERVFTEERARFYGAEIVSALEYLHS------RDVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHEEEcCC---CCEEecccHHhccccCCCCcc
Confidence            7654                    56777777      999999999999999875   8999999999875422 2234


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...+||+.|+||               |+||++|+|++|+.||.+.+.......+......+|.    .+++++.+||.+
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~li~~  228 (323)
T cd05595         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR----TLSPEAKSLLAG  228 (323)
T ss_pred             ccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHHHHH
Confidence            456799999999               9999999999999999998888888888777766664    589999999999


Q ss_pred             hcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         204 ILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       204 ~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      ||..||.+||     ++.++++||||.+..+...
T Consensus       229 ~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~~~~~  262 (323)
T cd05595         229 LLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDV  262 (323)
T ss_pred             HccCCHHHhCCCCCCCHHHHHcCCCcCCCCHHHH
Confidence            9999999998     8999999999998775543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0586|consensus

Probab=100.00  E-value=1.1e-37  Score=300.18  Aligned_cols=208  Identities=23%  Similarity=0.322  Sum_probs=189.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .-||+|.|+.|.+|++..||..|| +|+++...     ++.+.+|+++|..|+|||||++|.+...   +|+||||  +|
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~Va-iK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~g  140 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVA-IKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGG  140 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEE-EEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCc
Confidence            379999999999999999999999 67766533     4568999999999999999999998764   9999999  89


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ++|++                    .|++|||+      ++|+|||||++|||++.+   ..+||+|||++..+..+...
T Consensus       141 e~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~------k~ivHrdLk~eNilL~~~---mnikIaDfgfS~~~~~~~~l  211 (596)
T KOG0586|consen  141 ELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHS------KNIVHRDLKAENILLDEN---MNIKIADFGFSTFFDYGLML  211 (596)
T ss_pred             hhHHHHHhcccchhhhhhhhhHHHHHHHHHHhh------cceeccccchhhcccccc---cceeeeccccceeecccccc
Confidence            99988                    66777777      999999999999999986   88999999999999988899


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      .++||++.|.||                |+|+++|.|+.|.+||.|.+..++..+...+.+..|..    +|.++.++|+
T Consensus       212 qt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~----ms~dce~lLr  287 (596)
T KOG0586|consen  212 QTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFY----MSCDCEDLLR  287 (596)
T ss_pred             cccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccce----eechhHHHHH
Confidence            999999999999                99999999999999999999999999999999888764    7999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      ++|.++|.+|+++++++.|.|.......
T Consensus       288 k~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  288 KFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             HhhccCccccCCHHHhhhhcccchhhhh
Confidence            9999999999999999999999766544

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=7.6e-37  Score=291.34  Aligned_cols=218  Identities=22%  Similarity=0.305  Sum_probs=168.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e   75 (379)
                      .++||+|+||.||+|++..+|+.||+++....    .....+.+|+.+++.++||||+++++++.        .+|+++|
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e   84 (338)
T cd07859           5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFE   84 (338)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEe
Confidence            45899999999999999999999986444321    22346889999999999999999988752        2699999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | ++.+.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~NIll~~~---~~~kL~Dfg~~~~~~~  155 (338)
T cd07859          85 LMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHT------ANVFHRDLKPKNILANAD---CKLKICDFGLARVAFN  155 (338)
T ss_pred             cCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEECCC---CcEEEccCcccccccc
Confidence            9 5555544                    67778887      999999999999999885   8999999999976432


Q ss_pred             Cc----cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh-------------
Q psy6046         135 GI----EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISK-------------  180 (379)
Q Consensus       135 ~~----~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~-------------  180 (379)
                      ..    .....+||+.|+||                 |+||++|+|++|++||.+.+.......+..             
T Consensus       156 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i  235 (338)
T cd07859         156 DTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRV  235 (338)
T ss_pred             ccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence            21    12346799999999                 999999999999999987665433322211             


Q ss_pred             --------------CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         181 --------------AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       181 --------------~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                                    .........++.+++.+.++|.+||..||++|||++++++||||++........
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~~~~~~  303 (338)
T cd07859         236 RNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREP  303 (338)
T ss_pred             hhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCcccccc
Confidence                          000011122346788999999999999999999999999999998876554433

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0201|consensus

Probab=100.00  E-value=1.8e-38  Score=294.38  Aligned_cols=206  Identities=24%  Similarity=0.291  Sum_probs=176.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|.+..|++.|| +|+++...    .+.+.+|+.+|.++++|||.++|+.+..   ++++|||  +|.
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vA-iKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGs   97 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVA-IKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGS   97 (467)
T ss_pred             hhccccccceeeeeeeccccceEE-EEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcc
Confidence            599999999999999999999888 78877643    4568999999999999999999987543   8899999  565


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-c
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-I  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-~  138 (379)
                      +.+.                    .|+.|||.      ++.+|||||+.|||+..+   +.+||+|||.+........ .
T Consensus        98 v~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~------~~kiHrDIKaanil~s~~---g~vkl~DfgVa~ql~~~~~rr  168 (467)
T KOG0201|consen   98 VLDLLKSGNILDEFEIAVILREVLKGLDYLHS------EKKIHRDIKAANILLSES---GDVKLADFGVAGQLTNTVKRR  168 (467)
T ss_pred             hhhhhccCCCCccceeeeehHHHHHHhhhhhh------cceecccccccceeEecc---CcEEEEecceeeeeechhhcc
Confidence            5555                    67888888      999999999999999986   8999999999998876543 3


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      .+++|||+||||               |||++++||++|.+||....+...+..|-+.   .|+..-..+|+.+++||..
T Consensus       169 ~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~---~PP~L~~~~S~~~kEFV~~  245 (467)
T KOG0201|consen  169 KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKS---APPRLDGDFSPPFKEFVEA  245 (467)
T ss_pred             ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCC---CCCccccccCHHHHHHHHH
Confidence            789999999999               9999999999999999988775555444433   2333444789999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCC
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||..||+.||||.++|+|+|++..
T Consensus       246 CL~k~P~~RpsA~~LLKh~FIk~a  269 (467)
T KOG0201|consen  246 CLDKNPEFRPSAKELLKHKFIKRA  269 (467)
T ss_pred             HhhcCcccCcCHHHHhhhHHHHhc
Confidence            999999999999999999999873

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=9e-37  Score=289.32  Aligned_cols=208  Identities=21%  Similarity=0.317  Sum_probs=175.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|+++.+++.||+ |....      .....+..|..++..+ +||||+++++++.+   +|++|||  +
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAV-KVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEE-EEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            699999999999999999998885 44332      2335577888888876 69999999988665   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... ...
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~------~~ivH~dlkp~NIli~~~---~~~kL~DfG~~~~~~~~~~  151 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHD------KGIIYRDLKLDNVLLDHE---GHCKLADFGMCKEGIFNGK  151 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCCCCHHHeEECCC---CcEEEeeCCCCeecCcCCC
Confidence            777654                    56777777      999999999999999986   899999999987643 223


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|+.||.+.+..+....+..+...+|.    .+++++.+||
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~li  227 (320)
T cd05590         152 TTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPT----WLSQDAVDIL  227 (320)
T ss_pred             cccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHHH
Confidence            34556799999999               9999999999999999999998888888887766654    4799999999


Q ss_pred             HHhcccCCCCCCCH------HHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTA------KEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~------~e~l~hp~~~~~~~~~  231 (379)
                      .+||..||++||++      ++++.||||....+..
T Consensus       228 ~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~~~  263 (320)
T cd05590         228 KAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEK  263 (320)
T ss_pred             HHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCHHH
Confidence            99999999999998      9999999998876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG4236|consensus

Probab=100.00  E-value=3.5e-38  Score=297.27  Aligned_cols=214  Identities=25%  Similarity=0.399  Sum_probs=190.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      |..++||+|.||+||-|+++.||+.|| +|+++.     +...++..|+.||+.+.||.||.+--.++.   .++|||- 
T Consensus       567 f~devLGSGQFG~VYgg~hRktGrdVA-vKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl  645 (888)
T KOG4236|consen  567 FADEVLGSGQFGTVYGGKHRKTGRDVA-VKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL  645 (888)
T ss_pred             hhHhhccCCcceeeecceecccCceee-eeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh
Confidence            777899999999999999999999999 565543     445779999999999999999998766654   8999998 


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      .|+..+.                      .|+.|||.      ++|+|+||||+|+|+.+.++.-++||||||+|+.+..
T Consensus       646 ~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~------knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgE  719 (888)
T KOG4236|consen  646 HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHF------KNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGE  719 (888)
T ss_pred             cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhh------cceeeccCCchheeeccCCCCCceeeccccceeecch
Confidence            5555554                      56777777      9999999999999999988888999999999999988


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .+...+.+|||.|.||               |.|||+|--|.|..||..  .+++-.+|.+..+-+|+..|..+|+++.|
T Consensus       720 ksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNE--dEdIndQIQNAaFMyPp~PW~eis~~Aid  797 (888)
T KOG4236|consen  720 KSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNE--DEDINDQIQNAAFMYPPNPWSEISPEAID  797 (888)
T ss_pred             hhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCC--ccchhHHhhccccccCCCchhhcCHHHHH
Confidence            8888899999999999               999999999999999965  35577888888899999999999999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||..+|++.-.+|.|.+..|.|||+++..
T Consensus       798 lIn~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  798 LINNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             HHHHHHHHHHHHhcchHhhccchhhhcch
Confidence            99999999999999999999999998654

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2e-36  Score=287.03  Aligned_cols=209  Identities=19%  Similarity=0.267  Sum_probs=175.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+|+.||+ |....      .....+..|.++++.+ +||||+++++++.+   +|++|||  +
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAI-KVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEE-EEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            699999999999999999998884 44332      2234577899998866 79999999998765   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-c
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-I  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... .
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDikp~Nill~~~---~~~kL~Dfg~~~~~~~~~~  151 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHR------HGVIYRDLKLDNILLDAE---GHCKLADFGMCKEGILNGV  151 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHeEECCC---CCEEEeecccceecccCCc
Confidence            666544                    56777777      999999999999999875   89999999999764322 2


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|+.||.+.+..+.+..+..+...+|.    .+++++.++|
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~ll  227 (321)
T cd05591         152 TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPV----WLSKEAVSIL  227 (321)
T ss_pred             cccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHHH
Confidence            34456799999999               9999999999999999999999999998887766654    4799999999


Q ss_pred             HHhcccCCCCCC-------CHHHHhcCccccCCccccc
Q psy6046         202 AKILIKNPMERM-------TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       202 ~~~L~~dP~~Rp-------t~~e~l~hp~~~~~~~~~~  232 (379)
                      .+||..||++||       +++++++||||....+...
T Consensus       228 ~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~~~~~~  265 (321)
T cd05591         228 KAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLL  265 (321)
T ss_pred             HHHhccCHHHcCCCCCCCCCHHHHhcCCccCCCCHHHH
Confidence            999999999999       9999999999988766543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.2e-36  Score=284.30  Aligned_cols=211  Identities=19%  Similarity=0.214  Sum_probs=162.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|++..+|+.+|+ |....    .....+.+|+.+++.++||||+++++++.+   .|+++|| .|.
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~   88 (303)
T cd07869          10 LEKLGEGSYATVYKGKSKVNGKLVAL-KVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTD   88 (303)
T ss_pred             eeeEEecCCEEEEEEEECCCCCEEEE-EEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCCcC
Confidence            45899999999999999999998885 54432    122457899999999999999999998764   8999999 555


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-cc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IE  137 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~  137 (379)
                      +.+.                     .|+.|||+      +||+||||||+||+++..   +.+||+|||++...... ..
T Consensus        89 l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~dlkp~Nill~~~---~~~kl~Dfg~~~~~~~~~~~  159 (303)
T cd07869          89 LCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQ------RYILHRDLKPQNLLISDT---GELKLADFGLARAKSVPSHT  159 (303)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEECCCCcceeccCCCcc
Confidence            5433                     56777777      999999999999999875   88999999999764322 23


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCC--------------C-
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLD--------------F-  185 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~--------------~-  185 (379)
                      ....+||+.|+||                |+||++|+|++|..||.+... .+.+..+......              + 
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (303)
T cd07869         160 YSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFK  239 (303)
T ss_pred             CCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccc
Confidence            3456789999999                999999999999999987533 3333333211000              0 


Q ss_pred             --------Ccc---cc--cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         186 --------PDE---LF--EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       186 --------~~~---~~--~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                              +..   .+  ...++++.+||.+||+.||++|||+.|+++||||++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~  295 (303)
T cd07869         240 PERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLP  295 (303)
T ss_pred             cccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccCC
Confidence                    000   00  12457899999999999999999999999999998765

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-36  Score=293.48  Aligned_cols=213  Identities=23%  Similarity=0.284  Sum_probs=173.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .++||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+|+.++||||+++++.+.+   +|++|||  
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~   84 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAM-KKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLP   84 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCC
Confidence            45899999999999999999998884 54432      223457889999999999999999988765   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.......
T Consensus        85 ~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~------~~ivH~Dlkp~NIl~~~~---~~~kl~Dfg~~~~~~~~~  155 (364)
T cd05599          85 GGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHK------LGYIHRDIKPDNLLLDAK---GHIKLSDFGLCTGLKKSH  155 (364)
T ss_pred             CcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCCHHHeEECCC---CCEEEeecccceeccccc
Confidence            7777665                    56777777      999999999999999885   899999999987643211


Q ss_pred             ---------------------------------------cccccccCCCCcch---------------HHHHHHHHHhhC
Q psy6046         137 ---------------------------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTG  162 (379)
Q Consensus       137 ---------------------------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg  162 (379)
                                                             .....+||+.|+||               |+||++|+|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G  235 (364)
T cd05599         156 RTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVG  235 (364)
T ss_pred             cccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcC
Confidence                                                   01134699999999               999999999999


Q ss_pred             CCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCC---HHHHhcCccccCCcccc
Q psy6046         163 FSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT---AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       163 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt---~~e~l~hp~~~~~~~~~  231 (379)
                      .+||.+.+..+....+......++.+....+++++++||.+||. +|.+|++   +.+++.||||+...+..
T Consensus       236 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~~~~  306 (364)
T cd05599         236 YPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDWEH  306 (364)
T ss_pred             CCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCCHHH
Confidence            99999988888877776644332222223579999999999997 9999998   99999999999876543

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0192|consensus

Probab=100.00  E-value=2.6e-36  Score=286.77  Aligned_cols=200  Identities=18%  Similarity=0.194  Sum_probs=165.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----chHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----GVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~--   76 (379)
                      .+.||+|+||+||+|..  .|..+|++|.....+     ...+.+|+.+|..|+|||||++++++.+    +++||||  
T Consensus        46 ~~~iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhcccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            34799999999999984  455634466665533     4589999999999999999999999876    5899999  


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCC-eEeCCCCCCcEEEeecCCCC-cEEEeecccceee
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMD-FIFFFLQPQNLVMMGDFPNC-DIKVCDFEISRVI  132 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~-ivHrDlkp~Nill~~~~~~~-~ikl~DFG~a~~~  132 (379)
                      +|+|+..                      .|+.|||+      ++ ||||||||+|||++.+   + ++||||||+++..
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~------~~~iIHrDLK~~NiLv~~~---~~~~KI~DFGlsr~~  194 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHS------EGPIIHRDLKSDNILVDLK---GKTLKIADFGLSREK  194 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc------CCCeeecccChhhEEEcCC---CCEEEECCCccceee
Confidence            8888777                      45667777      99 9999999999999986   5 9999999999887


Q ss_pred             ccC-ccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         133 LDG-IEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       133 ~~~-~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ... .......||+.||||                 |+|+++|||+||+.||.+.........+..+....+-  ...++
T Consensus       195 ~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~--p~~~~  272 (362)
T KOG0192|consen  195 VISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPI--PKECP  272 (362)
T ss_pred             ccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCC--CccCC
Confidence            654 344557899999999                 9999999999999999998887777766654433321  23489


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+..||.+||..||.+||++.+++.
T Consensus       273 ~~l~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  273 PHLSSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             HHHHHHHHHhCCCCCCcCCCHHHHHH
Confidence            99999999999999999999999875

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=8.2e-37  Score=290.16  Aligned_cols=209  Identities=23%  Similarity=0.324  Sum_probs=174.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|+||.||+|.+..+|+.||+ |....      .....+.+|+++++.++||||+++++.+.+   +|++|||  +|
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~-K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAM-KILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            699999999999999999998884 44332      223457889999999999999999887654   8999999  67


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCcc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIE  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~~  137 (379)
                      +|+..                    .|+.|||+     ..||+||||||+|||++.+   +.+||+|||+++... ....
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~-----~~~ivHrDikp~NIll~~~---~~~kL~Dfg~~~~~~~~~~~  152 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHS-----EKNVVYRDLKLENLMLDKD---GHIKITDFGLCKEGIKDGAT  152 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-----cCCEEecCCCCCeEEECCC---CCEEEecCCCCeecCCCCcc
Confidence            77655                    44555553     2799999999999999985   899999999987643 2233


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|..||.+.+..+....+......+|.    .+++++.+||.
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~li~  228 (325)
T cd05594         153 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR----TLSPEAKSLLS  228 (325)
T ss_pred             cccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHHHH
Confidence            4556799999999               9999999999999999998888888888777766664    47999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      +||..||++|+     ++.++++||||.+..+..
T Consensus       229 ~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~  262 (325)
T cd05594         229 GLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQD  262 (325)
T ss_pred             HHhhcCHHHhCCCCCCCHHHHhcCCCcCCCCHHH
Confidence            99999999997     999999999999866543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2e-36  Score=291.87  Aligned_cols=212  Identities=24%  Similarity=0.262  Sum_probs=172.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||+||+|++..+|+.||+ |+...      .....+.+|+.+++.++||||+++++.+.+   +|++|||  
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~   84 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAM-KILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLP   84 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEE-EEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCC
Confidence            35899999999999999999998884 54432      223468889999999999999999998765   7999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus        85 gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~------~givHrDlKp~NILi~~~---~~vkL~DFGla~~~~~~~  155 (363)
T cd05628          85 GGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQ------LGFIHRDIKPDNLLLDSK---GHVKLSDFGLCTGLKKAH  155 (363)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEecCCCHHHeEECCC---CCEEEeeccCcccccccc
Confidence            7777766                    56777777      999999999999999875   899999999987543210


Q ss_pred             ------------------------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCC
Q psy6046         137 ------------------------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSP  165 (379)
Q Consensus       137 ------------------------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~P  165 (379)
                                                          .....+||+.|+||               |+||++|+|++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~P  235 (363)
T cd05628         156 RTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP  235 (363)
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCC
Confidence                                                01245799999999               999999999999999


Q ss_pred             CCCCChHHHHHHHHhCC--CCCCcccccCCCHHHHHHHHHhcccCCC---CCCCHHHHhcCccccCCccccc
Q psy6046         166 FGGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFIAKILIKNPM---ERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       166 f~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~---~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      |.+.+..+.+.++....  ..+|+.  ..+++++++||.+|+. +|.   .||+++|+++||||++..+...
T Consensus       236 f~~~~~~~~~~~i~~~~~~~~~p~~--~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~~~~~  304 (363)
T cd05628         236 FCSETPQETYKKVMNWKETLIFPPE--VPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGVDWEHI  304 (363)
T ss_pred             CCCCCHHHHHHHHHcCcCcccCCCc--CCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCCHHHH
Confidence            99998888888887643  344432  2579999999999875 455   4589999999999998877654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.1e-36  Score=292.45  Aligned_cols=213  Identities=22%  Similarity=0.255  Sum_probs=175.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ..||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|+++||  +
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAM-KLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCC
Confidence            4799999999999999999998885 44332      223457789999999999999999988765   8999999  6


Q ss_pred             chhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          78 PPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      |+|...                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.......  
T Consensus       128 g~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivHrDLkp~NILl~~~---~~~kL~DfG~~~~~~~~~~~  198 (370)
T cd05596         128 GDLVNLMSNYDIPEKWARFYTAEVVLALDAIHS------MGFIHRDVKPDNMLLDKS---GHLKLADFGTCMKMDANGMV  198 (370)
T ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHEEEcCC---CCEEEEeccceeeccCCCcc
Confidence            777655                   56777777      999999999999999875   899999999998764332  


Q ss_pred             cccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .....+||+.|+||                   |+||++|+|++|++||.+.+....+..+.........+....+|.++
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  278 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQA  278 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHH
Confidence            23456799999999                   99999999999999999998888888887654322222223589999


Q ss_pred             HHHHHHhcccCCCC--CCCHHHHhcCccccCCcccc
Q psy6046         198 KDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       198 ~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      ++||.+||..+|.+  |+|++++++||||++..+..
T Consensus       279 ~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~~~~~  314 (370)
T cd05596         279 KDLICAFLTDREVRLGRNGVDEIKSHPFFKNDQWTF  314 (370)
T ss_pred             HHHHHHHccChhhccCCCCHHHHhcCcccCCCChhh
Confidence            99999999999988  99999999999998866543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=4.2e-36  Score=289.70  Aligned_cols=210  Identities=19%  Similarity=0.242  Sum_probs=165.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+++.+|+++....    .....+.+|+.+++.++||||+++++++.         .+|++||
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e  109 (364)
T cd07875          30 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVME  109 (364)
T ss_pred             EEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEe
Confidence            4899999999999999999999885544322    23456889999999999999999988653         2689999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .+.+...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kL~DfG~a~~~~~~~  180 (364)
T cd07875         110 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTSF  180 (364)
T ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh------CCeecCCCCHHHEEECCC---CcEEEEeCCCccccCCCC
Confidence            9 4444432                  56777777      999999999999999875   899999999998765444


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC---------------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP---------------  186 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~---------------  186 (379)
                      ......||+.|+||               |+||++|+|++|+.||.+.+..+.+..+.......+               
T Consensus       181 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (364)
T cd07875         181 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYV  260 (364)
T ss_pred             cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHH
Confidence            45567899999999               999999999999999998877666555433111000               


Q ss_pred             -----------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         187 -----------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       187 -----------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                                             .......+..+++||.+||..||.+|||+.++|.||||...
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~~  324 (364)
T cd07875         261 ENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  324 (364)
T ss_pred             hhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCcccccc
Confidence                                   00111235688999999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=3.2e-36  Score=289.97  Aligned_cols=210  Identities=21%  Similarity=0.294  Sum_probs=163.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      +.||+|+||.||+|.+..+|+.+|+++....    .....+.+|+.+++.++||||+++++++.         .+|+++|
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e  106 (359)
T cd07876          27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVME  106 (359)
T ss_pred             EEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEe
Confidence            4899999999999999999999985444321    23456889999999999999999998753         2689999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .+.+...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus       107 ~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~ivHrDlkp~NIl~~~~---~~~kl~Dfg~a~~~~~~~  177 (359)
T cd07876         107 LMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTACTNF  177 (359)
T ss_pred             CCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEECCC---CCEEEecCCCccccccCc
Confidence            9 4444332                  56777777      999999999999999985   899999999998655444


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh---------------------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISK---------------------  180 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~---------------------  180 (379)
                      ......||+.|+||               |+||++|+|++|+.||.+.+..+.+..+..                     
T Consensus       178 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (359)
T cd07876         178 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYV  257 (359)
T ss_pred             cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            45567889999999               999999999999999987765443332211                     


Q ss_pred             -CCCCCCc----------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         181 -AQLDFPD----------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       181 -~~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                       .....+.                ......++++++||.+||..||++|||+.|+|+||||...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  321 (359)
T cd07876         258 ENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVW  321 (359)
T ss_pred             hhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhh
Confidence             1111110                0111246789999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.3e-36  Score=280.07  Aligned_cols=207  Identities=20%  Similarity=0.245  Sum_probs=162.2

Q ss_pred             ccCcCCCCceEEEEEEEcCC-CcEEEEEEecccc-----cchHHHHHHHHHHhC---CCCCcceeeeecC--------cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-KREVVQWKERNVS-----QGVVIVDEEQLLKLI---KVEPIEKYYSLDP--------EP   70 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-g~~~a~~k~~~~~-----~~~~~~~E~~il~~l---~hpnIv~~~~~~~--------~~   70 (379)
                      ...||+|+||.||+|++..+ |..+| +|.....     ......+|+.+++.+   +||||+++++++.        .+
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~   84 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVA-LKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   84 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEE-EEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcE
Confidence            45799999999999998665 45555 5544321     123567788887776   5999999998753        27


Q ss_pred             eEEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          71 LLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        71 ~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      ++++|+ .|.+.+.                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||
T Consensus        85 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~iiH~dlkp~Nil~~~~---~~~kl~Dfg  155 (290)
T cd07862          85 TLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS------HRVVHRDLKPQNILVTSS---GQIKLADFG  155 (290)
T ss_pred             EEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCHHHEEEcCC---CCEEEcccc
Confidence            899999 4444332                      56777777      999999999999999885   899999999


Q ss_pred             cceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC-C-----
Q psy6046         128 ISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF-P-----  186 (379)
Q Consensus       128 ~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~-~-----  186 (379)
                      +++............||+.|+||               |+||++|+|++|++||.+.+..+.+..+....... +     
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  235 (290)
T cd07862         156 LARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR  235 (290)
T ss_pred             ceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchh
Confidence            99876555445567799999999               99999999999999999988877777665421110 0     


Q ss_pred             -----------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         187 -----------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       187 -----------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                       ....+.+++.+++|+.+||..||++|||+.++|+||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         236 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             hhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence                             01224578899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3e-36  Score=292.51  Aligned_cols=212  Identities=22%  Similarity=0.229  Sum_probs=167.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ..||+|+||+||+|++..+++.||+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~~~~~ai-K~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~g   85 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDTHALYAM-KTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (381)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            4799999999999999999999885 44332      223568899999999999999999998765   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC--
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG--  135 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~--  135 (379)
                      |+|.+.                    .|+.|||.      .||+||||||+|||++.+   +.+||+|||+++.+...  
T Consensus        86 g~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~------~givHrDlKp~Nili~~~---~~~kL~DFGl~~~~~~~~~  156 (381)
T cd05626          86 GDMMSLLIRMEVFPEVLARFYIAELTLAIESVHK------MGFIHRDIKPDNILIDLD---GHIKLTDFGLCTGFRWTHN  156 (381)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecCCcHHHEEECCC---CCEEEeeCcCCcccccccc
Confidence            777655                    56777777      999999999999999875   89999999997543100  


Q ss_pred             ----------------------------------------------ccccccccCCCCcch---------------HHHH
Q psy6046         136 ----------------------------------------------IEIRELLGTPDYVGK---------------SLGV  154 (379)
Q Consensus       136 ----------------------------------------------~~~~~~~gt~~y~aP---------------SlGv  154 (379)
                                                                    ....+.+||+.|+||               |+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~  236 (381)
T cd05626         157 SKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGV  236 (381)
T ss_pred             cccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhh
Confidence                                                          001245799999999               9999


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc--CCCCCCCHHHHhcCccccCCccc
Q psy6046         155 TAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK--NPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       155 il~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~--dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      ++|+|++|.+||.+.+..+....+.........+....+++++++||.+|+..  +|..|+++.+++.||||.+..+.
T Consensus       237 il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~~~  314 (381)
T cd05626         237 ILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVDFS  314 (381)
T ss_pred             HHHHHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCChh
Confidence            99999999999998887776666654322222222236899999999996654  55559999999999999887654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=4.4e-36  Score=283.78  Aligned_cols=213  Identities=15%  Similarity=0.212  Sum_probs=155.8

Q ss_pred             cCccCcCCCCceEEEEEEEcC--CCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-C
Q psy6046           6 MASHVGGNRARSSCSRKPEKT--TKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-R   77 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-~   77 (379)
                      +.+..||+|+||+||+|+++.  +++.+|++..........+.+|+.+|+.++||||+++++++.+     .|+++|| .
T Consensus         4 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           4 YEGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            345689999999999999764  5667775444333334568899999999999999999887632     6899999 4


Q ss_pred             chhhHH-----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec-CCCCcEEEeecc
Q psy6046          78 PPVYQA-----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFE  127 (379)
Q Consensus        78 g~l~~~-----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG  127 (379)
                      +.++..                             .|+.|||+      +||+||||||+|||+... ...+.+||+|||
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~------~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA------NWVLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh------CCEEcCCCCHHHEEEecCCCCcCcEEEeecC
Confidence            443321                             56677777      999999999999999643 124789999999


Q ss_pred             cceeeccCc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh---------HHHHHHH
Q psy6046         128 ISRVILDGI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD---------SETFRNI  178 (379)
Q Consensus       128 ~a~~~~~~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~---------~~~~~~i  178 (379)
                      +++......    .....+||+.|+||                |+||++|+|++|++||.+...         ...+..+
T Consensus       158 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~  237 (317)
T cd07868         158 FARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRI  237 (317)
T ss_pred             ceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHH
Confidence            998764321    23456789999999                999999999999999965332         1122222


Q ss_pred             HhCCC-C----------CC-----------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         179 SKAQL-D----------FP-----------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       179 ~~~~~-~----------~~-----------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..... +          .+                       .......+..+.+||.+||..||.+|||++|+|+||||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         238 FNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            11000 0          00                       00011235679999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4e-36  Score=285.23  Aligned_cols=208  Identities=24%  Similarity=0.346  Sum_probs=173.1

Q ss_pred             cCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      +.||+|+||.||+|++.   .+++.|| +|....       .....+.+|+.+|+.++||||+++++.+.+   +|++||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~a-vK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFA-MKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEE-EEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            47999999999999864   4677777 454432       223457889999999999999999888654   899999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |  +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++...
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~  151 (323)
T cd05584          81 YLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQ------QGIIYRDLKPENILLDAQ---GHVKLTDFGLCKESI  151 (323)
T ss_pred             CCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEECCC---CCEEEeeCcCCeecc
Confidence            9  6677655                    56777777      999999999999999875   899999999997543


Q ss_pred             c-CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         134 D-GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       134 ~-~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      . .......+||+.|+||               |+||++|+|++|+.||.+.+.......+..+...+|.    .+++.+
T Consensus       152 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~  227 (323)
T cd05584         152 HEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPP----YLTPEA  227 (323)
T ss_pred             cCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHH
Confidence            2 2234456799999999               9999999999999999998888888888887766654    479999


Q ss_pred             HHHHHHhcccCCCCCC-----CHHHHhcCccccCCccc
Q psy6046         198 KDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~  230 (379)
                      .+||.+||..||++||     ++++++.||||....+.
T Consensus       228 ~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~~~~  265 (323)
T cd05584         228 RDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWD  265 (323)
T ss_pred             HHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCCCHH
Confidence            9999999999999999     89999999999876543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2.8e-36  Score=280.88  Aligned_cols=208  Identities=23%  Similarity=0.267  Sum_probs=162.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|+++.+++.+|+++....    .....+.+|+.+++.++||||+++++++.+   .|+++|| .+.
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKN   85 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCC
Confidence            35799999999999999999998885433322    223568899999999999999999988765   8999999 222


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      +...                     .|+.|||.      .||+||||||+||+++.+   +.+||+|||++.......  
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~i~H~dlkp~Nill~~~---~~~kl~Dfg~~~~~~~~~~~  156 (287)
T cd07848          86 MLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHK------NDIVHRDIKPENLLISHN---DVLKLCDFGFARNLSEGSNA  156 (287)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CcEEEeeccCcccccccccc
Confidence            2221                     56777777      999999999999999875   899999999998764332  


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC----------------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF----------------  185 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~----------------  185 (379)
                      ......||+.|+||               |+||++|+|++|++||.+.+..+....+.....+.                
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (287)
T cd07848         157 NYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHG  236 (287)
T ss_pred             cccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcc
Confidence            23346789999999               99999999999999999877655444433211111                


Q ss_pred             ---Cc---------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         186 ---PD---------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       186 ---~~---------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                         +.         .....+|+++.+||.+||..||++|||++++|+||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         237 LRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             cccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence               10         0112478899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-36  Score=286.77  Aligned_cols=213  Identities=23%  Similarity=0.293  Sum_probs=174.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   83 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKDTGEIVAL-KRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYV   83 (333)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEE-EEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCC
Confidence            345899999999999999999998884 54432      233568899999999999999999988765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++..... 
T Consensus        84 ~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~kL~Dfg~a~~~~~-  153 (333)
T cd05600          84 PGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHE------LGYIHRDLKPENFLIDAS---GHIKLTDFGLSKGIVT-  153 (333)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEECCC---CCEEEEeCcCCccccc-
Confidence             6666665                    56777777      999999999999999875   8999999999976533 


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc----ccCCCHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL----FEDISPE  196 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~----~~~~s~~  196 (379)
                       .....+||+.|+||               |+||++|+|++|..||.+.+..+....+......+..+.    ...++++
T Consensus       154 -~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~  232 (333)
T cd05600         154 -YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDE  232 (333)
T ss_pred             -ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHH
Confidence             34557899999999               999999999999999999888887777665332221111    1257999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      +.+||.+||..+|.+||++.++++||||....+..
T Consensus       233 ~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~~~~~  267 (333)
T cd05600         233 AWDLITKLINDPSRRFGSLEDIKNHPFFKEVDWNE  267 (333)
T ss_pred             HHHHHHHHhhChhhhcCCHHHHHhCcccCCCCHHH
Confidence            99999999999999999999999999999876543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=5.4e-36  Score=278.55  Aligned_cols=208  Identities=19%  Similarity=0.253  Sum_probs=165.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ||+|+||+||+|.+..+|+.+|+++....     ...+.+..|+.+++.++||||+++++++.+   +|++|||  +|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            79999999999999999999885443321     122457789999999999999999887654   8999999  6666


Q ss_pred             hHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          81 YQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        81 ~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      ...                        .|+.|||+      +||+||||||+||+++.+   +.++|+|||++.......
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~~l~dfg~~~~~~~~~  151 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ------RRIIYRDLKPENVLLDND---GNVRISDLGLAVELKDGQ  151 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEeeCccceecCCCC
Confidence            321                        56777777      999999999999999875   889999999998765433


Q ss_pred             -cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH----HHHHHHHhCCCCCCcccccCCCHH
Q psy6046         137 -EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS----ETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       137 -~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                       ......||+.|+||               |+||++|+|++|+.||.+....    +....+......+    ...+++.
T Consensus       152 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  227 (280)
T cd05608         152 SKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTY----PDKFSPA  227 (280)
T ss_pred             ccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCC----cccCCHH
Confidence             23446799999999               9999999999999999765432    2333333333333    2468999


Q ss_pred             HHHHHHHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         197 AKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      +.+++.+||..||++||     |++++++||||++..|..
T Consensus       228 ~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~~~~  267 (280)
T cd05608         228 SKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQ  267 (280)
T ss_pred             HHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCCHhH
Confidence            99999999999999999     889999999999876554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=4.2e-36  Score=291.59  Aligned_cols=211  Identities=24%  Similarity=0.282  Sum_probs=170.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+++.||+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +
T Consensus         7 ~~LG~G~~g~Vy~a~~~~~~~~~ai-K~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~g   85 (382)
T cd05625           7 KTLGIGAFGEVCLARKVDTKALYAM-KTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPG   85 (382)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEE-EEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCC
Confidence            4899999999999999999998885 44432      223568899999999999999999998765   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC--
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG--  135 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~--  135 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++..+...  
T Consensus        86 g~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~------~~ivHrDlKp~NILl~~~---g~~kL~DFGla~~~~~~~~  156 (382)
T cd05625          86 GDMMSLLIRMGIFPEDLARFYIAELTCAVESVHK------MGFIHRDIKPDNILIDRD---GHIKLTDFGLCTGFRWTHD  156 (382)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CCEEEeECCCCcccccccc
Confidence            777665                    46777777      999999999999999875   89999999997532100  


Q ss_pred             ----------------------------------------------ccccccccCCCCcch---------------HHHH
Q psy6046         136 ----------------------------------------------IEIRELLGTPDYVGK---------------SLGV  154 (379)
Q Consensus       136 ----------------------------------------------~~~~~~~gt~~y~aP---------------SlGv  154 (379)
                                                                    ....+.+||+.|+||               |+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGv  236 (382)
T cd05625         157 SKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV  236 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechH
Confidence                                                          001235799999999               9999


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCC---HHHHhcCccccCCccc
Q psy6046         155 TAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT---AKEALKHPWLMNKKQI  230 (379)
Q Consensus       155 il~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt---~~e~l~hp~~~~~~~~  230 (379)
                      ++|+|++|++||.+.+..+....+.......+.+....+++++.++|.+|+ .+|.+|++   ++++++||||+...+.
T Consensus       237 il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~  314 (382)
T cd05625         237 ILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDFS  314 (382)
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcChH
Confidence            999999999999998887777777654333332233468999999999986 59999997   9999999999886644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.2e-36  Score=283.10  Aligned_cols=208  Identities=22%  Similarity=0.294  Sum_probs=171.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHh-CCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKL-IKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++||+|+||.||+|+++.+|+.||+ |....      .....+..|..++.. ++||||+++++++.+   +|++|||  
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   79 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAV-KALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCC
Confidence            3699999999999999999998885 44332      233457778888875 489999999988664   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-C
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-G  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~  135 (379)
                      +|+|...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... .
T Consensus        80 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivHrDlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~  150 (316)
T cd05620          80 GGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHS------KGIIYRDLKLDNVMLDRD---GHIKIADFGMCKENVFGD  150 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHeEECCC---CCEEeCccCCCeecccCC
Confidence            6676544                    56777777      999999999999999975   8999999999875422 2


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......+||+.|+||               |+||++|+|++|..||.+.+..+....+......+|.    .++.++++|
T Consensus       151 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l  226 (316)
T cd05620         151 NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPR----WITKESKDI  226 (316)
T ss_pred             CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHHHHH
Confidence            234567899999999               9999999999999999998888888888776655554    479999999


Q ss_pred             HHHhcccCCCCCCCH-HHHhcCccccCCccc
Q psy6046         201 IAKILIKNPMERMTA-KEALKHPWLMNKKQI  230 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~-~e~l~hp~~~~~~~~  230 (379)
                      |.+||..||.+||++ +++++||||....+.
T Consensus       227 i~~~l~~dP~~R~~~~~~~~~h~~f~~~~~~  257 (316)
T cd05620         227 LEKLFERDPTRRLGVVGNIRGHPFFKTINWT  257 (316)
T ss_pred             HHHHccCCHHHcCCChHHHHcCCCcCCCCHH
Confidence            999999999999997 589999999887654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-36  Score=290.80  Aligned_cols=213  Identities=24%  Similarity=0.283  Sum_probs=170.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+.||+|+||.||+|++..+|+.||++.....     .....+.+|+++++.++||||+++++++.+   +|++|||  +
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~g   85 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPG   85 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCC
Confidence            45899999999999999999999885433221     223568889999999999999999998765   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|+..                    .|+.|||+      .||+||||||+|||++.+   +.+||+|||+++.+.... 
T Consensus        86 g~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~------~givHrDlkp~NIll~~~---~~~kl~DfGla~~~~~~~~  156 (377)
T cd05629          86 GDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHK------LGFIHRDIKPDNILIDRG---GHIKLSDFGLSTGFHKQHD  156 (377)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHEEECCC---CCEEEeecccccccccccc
Confidence            777665                    56777777      999999999999999875   899999999996431100 


Q ss_pred             -----------------------------------------------cccccccCCCCcch---------------HHHH
Q psy6046         137 -----------------------------------------------EIRELLGTPDYVGK---------------SLGV  154 (379)
Q Consensus       137 -----------------------------------------------~~~~~~gt~~y~aP---------------SlGv  154 (379)
                                                                     .....+||+.|+||               |+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGv  236 (377)
T cd05629         157 SAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGA  236 (377)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecch
Confidence                                                           00125799999999               9999


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccccCCCHHHHHHHHHhcccCCCCC---CCHHHHhcCccccCCcc
Q psy6046         155 TAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFIAKILIKNPMER---MTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       155 il~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~R---pt~~e~l~hp~~~~~~~  229 (379)
                      ++|+|++|.+||.+.+..+.+..+....  ..+|.  ...++.++++||.+||. +|.+|   +|+.+++.||||++..+
T Consensus       237 il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~--~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~~  313 (377)
T cd05629         237 IMFECLIGWPPFCSENSHETYRKIINWRETLYFPD--DIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVDW  313 (377)
T ss_pred             hhhhhhcCCCCCCCCCHHHHHHHHHccCCccCCCC--CCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCCH
Confidence            9999999999999888888777776533  33332  23579999999999998 77775   59999999999998765


Q ss_pred             ccc
Q psy6046         230 IMT  232 (379)
Q Consensus       230 ~~~  232 (379)
                      ...
T Consensus       314 ~~~  316 (377)
T cd05629         314 DTI  316 (377)
T ss_pred             HHH
Confidence            443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=9.1e-36  Score=287.90  Aligned_cols=209  Identities=21%  Similarity=0.322  Sum_probs=172.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+++.+|+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAM-KLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCC
Confidence            4799999999999999999988884 54332      223457899999999999999999998765   8999999  7


Q ss_pred             chhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          78 PPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      |+|.+.                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|.......  
T Consensus       128 g~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~------~~IvHrDLKp~NILl~~~---~~~kL~DFG~a~~~~~~~~~  198 (370)
T cd05621         128 GDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHS------MGLIHRDVKPDNMLLDKH---GHLKLADFGTCMKMDETGMV  198 (370)
T ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHEEECCC---CCEEEEecccceecccCCce
Confidence            777665                   56777777      999999999999999875   899999999998764332  


Q ss_pred             cccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccccCCCH
Q psy6046         137 EIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDISP  195 (379)
Q Consensus       137 ~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~  195 (379)
                      .....+||+.|+||                   |+||++|+|++|.+||.+.+....+..+....  +.+|..  ..+++
T Consensus       199 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~--~~~s~  276 (370)
T cd05621         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPED--VEISK  276 (370)
T ss_pred             ecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCc--ccCCH
Confidence            23456799999999                   89999999999999999988888888887644  333332  36799


Q ss_pred             HHHHHHHHhcccCCCC--CCCHHHHhcCccccCCcc
Q psy6046         196 EAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~  229 (379)
                      .+++++.+||..+|.+  |+|+.++++||||+...+
T Consensus       277 ~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~~~  312 (370)
T cd05621         277 HAKNLICAFLTDREVRLGRNGVEEIKQHPFFKNDQW  312 (370)
T ss_pred             HHHHHHHHHccCchhccCCCCHHHHhcCcccCCCCc
Confidence            9999999999865544  889999999999987543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=8.2e-36  Score=283.17  Aligned_cols=209  Identities=19%  Similarity=0.274  Sum_probs=173.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHH---HhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLL---KLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il---~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+||+|+||.||+|.+..+|+.||+ |....      ...+.+.+|++++   +.++||||+++++++.+   .|++|||
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~   83 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKTGELYAI-KALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY   83 (324)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence            4799999999999999999999885 44332      2335577777665   56679999999998664   8999999


Q ss_pred             --CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          77 --RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        77 --~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                        +|+|...                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... 
T Consensus        84 ~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~------~~ivHrdlkp~Nill~~~---~~~kL~Dfg~~~~~~~~  154 (324)
T cd05589          84 AAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHE------NKIVYRDLKLDNLLLDTE---GFVKIADFGLCKEGMGF  154 (324)
T ss_pred             CCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEecCCCHHHeEECCC---CcEEeCcccCCccCCCC
Confidence              6666544                   56777777      999999999999999986   8999999999875432 


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|+.||.+.+..+....+..+...+|.    .+++++.+
T Consensus       155 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~  230 (324)
T cd05589         155 GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPR----FLSREAIS  230 (324)
T ss_pred             CCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHHHH
Confidence            2234557899999999               9999999999999999999988888888887766654    47999999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         200 FIAKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       200 li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      ||.+||..||.+||     ++.++++||||++..+..
T Consensus       231 li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~~~~~  267 (324)
T cd05589         231 IMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDD  267 (324)
T ss_pred             HHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCCCHHH
Confidence            99999999999999     799999999998866443

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=9.9e-36  Score=283.28  Aligned_cols=208  Identities=20%  Similarity=0.247  Sum_probs=168.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+++.||+ |....      .....+.+|..+++.+ +||||+++++++.+   +|++|||  +
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~ai-K~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAM-KVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            699999999999999999998884 44432      2234578899999998 69999999998765   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++... ...
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nili~~~---~~~kL~Dfg~~~~~~~~~~  151 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHE------RGIIYRDLKLDNVLLDAE---GHIKLTDYGMCKEGIRPGD  151 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHeEECCC---CCEEECcCccccccccCCC
Confidence            777654                    56777777      999999999999999875   899999999987532 233


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC---------ChHHHHHHHHhCCCCCCcccccC
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE---------TDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~---------~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      .....+||+.|+||               |+||++|+|++|+.||...         ......+.+......+|.    .
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~  227 (329)
T cd05588         152 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPR----S  227 (329)
T ss_pred             ccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCC----C
Confidence            34567899999999               9999999999999999631         112344556666555554    5


Q ss_pred             CCHHHHHHHHHhcccCCCCCCC------HHHHhcCccccCCcccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMT------AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt------~~e~l~hp~~~~~~~~~  231 (379)
                      +++++.++|.+||..||.+|+|      ++++++||||....+..
T Consensus       228 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~~~~~  272 (329)
T cd05588         228 LSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDWDL  272 (329)
T ss_pred             CCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCCCHHH
Confidence            7999999999999999999997      78999999998766544

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.1e-35  Score=281.66  Aligned_cols=207  Identities=23%  Similarity=0.326  Sum_probs=173.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|.+..+++.||+ |....      .....+.+|+.+++.+ +||||+++++++.+   +|++|||  +
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAV-KVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            699999999999999999998884 44332      2345578899999888 69999999998654   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+|...                    .|+.|||+      .||+||||||+||+++.+   +.+||+|||+++... ...
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~------~~ivH~dlkp~Nill~~~---~~~kl~Dfg~~~~~~~~~~  151 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHE------RGIIYRDLKLDNVLLDSE---GHIKIADFGMCKEGILGGV  151 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEccCCCHHHeEECCC---CcEEecccCCCeecCcCCC
Confidence            666544                    56677777      999999999999999985   899999999997532 222


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+||
T Consensus       152 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~li  227 (318)
T cd05570         152 TTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPR----WLSKEAKSIL  227 (318)
T ss_pred             cccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCC----cCCHHHHHHH
Confidence            34456799999999               9999999999999999998888888888877666554    4799999999


Q ss_pred             HHhcccCCCCCCCH-----HHHhcCccccCCccc
Q psy6046         202 AKILIKNPMERMTA-----KEALKHPWLMNKKQI  230 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~-----~e~l~hp~~~~~~~~  230 (379)
                      .+||..||.+|||+     .+++.||||+...+.
T Consensus       228 ~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~~~  261 (318)
T cd05570         228 KSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWD  261 (318)
T ss_pred             HHHccCCHHHcCCCCCCCHHHHhcCCCcCCCCHH
Confidence            99999999999999     999999999887654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-36  Score=287.14  Aligned_cols=212  Identities=27%  Similarity=0.367  Sum_probs=175.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ....||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|++||| 
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (350)
T cd05573           5 VIKVIGRGAFGEVWLVRDKDTGQVYAM-KVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYM   83 (350)
T ss_pred             EEEEEEeCCcEEEEEEEECCCCCEEEE-EEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCC
Confidence            346899999999999999999999885 44432      234568899999999999999999988754   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|.+.                    .|+.|||.      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        84 ~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~------~giiH~Dlkp~NIll~~~---~~~kL~Dfg~~~~~~~~  154 (350)
T cd05573          84 PGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHK------LGFIHRDIKPDNILIDAD---GHIKLADFGLCKKMNKA  154 (350)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHeEECCC---CCEEeecCCCCccCccc
Confidence             6666555                    56777777      999999999999999985   89999999999765433


Q ss_pred             c------------------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC
Q psy6046         136 I------------------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET  170 (379)
Q Consensus       136 ~------------------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~  170 (379)
                      .                              ......||+.|+||               |+||++|+|++|+.||.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~  234 (350)
T cd05573         155 KDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT  234 (350)
T ss_pred             CcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC
Confidence            2                              23346799999999               99999999999999999988


Q ss_pred             hHHHHHHHHh--CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCC-HHHHhcCccccCCcccc
Q psy6046         171 DSETFRNISK--AQLDFPDELFEDISPEAKDFIAKILIKNPMERMT-AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       171 ~~~~~~~i~~--~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt-~~e~l~hp~~~~~~~~~  231 (379)
                      ..+....+..  ....+|..  ..+++++.+||.+||. ||.+||+ ++++++||||.+..+..
T Consensus       235 ~~~~~~~i~~~~~~~~~p~~--~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~~~  295 (350)
T cd05573         235 LQETYNKIINWKESLRFPPD--PPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDWEN  295 (350)
T ss_pred             HHHHHHHHhccCCcccCCCC--CCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCHHH
Confidence            8888877776  33444432  3479999999999997 9999999 99999999999876543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1e-35  Score=280.55  Aligned_cols=213  Identities=20%  Similarity=0.223  Sum_probs=166.2

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      ...+.||+|+||.||+|++..+++.+|+ |....    .....+.+|+.+++.++||||+++++++.+   .|+++|| .
T Consensus         9 ~~~~~lg~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   87 (309)
T cd07872           9 IKLEKLGEGTYATVFKGRSKLTENLVAL-KEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLD   87 (309)
T ss_pred             EEEEEecccCCEEEEEEEecCCCCeEEE-EEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCC
Confidence            3445899999999999999999988885 43332    223457899999999999999999998654   8999999 4


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +.+.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~------~~ivH~dlkp~Nill~~~---~~~kl~Dfg~~~~~~~~~  158 (309)
T cd07872          88 KDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHR------RKVLHRDLKPQNLLINER---GELKLADFGLARAKSVPT  158 (309)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEECccccceecCCCc
Confidence            444433                     56667776      999999999999999985   899999999997653322


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC-----------------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ-----------------  182 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~-----------------  182 (379)
                       ......+|+.|+||                |+||++|+|++|++||.+.+..+....+....                 
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T cd07872         159 KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEF  238 (309)
T ss_pred             cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhh
Confidence             23345678899999                99999999999999998877665554443211                 


Q ss_pred             --CCCCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         183 --LDFPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       183 --~~~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        ..++.       ...+.+++++++||.+||..||.+|||+.|++.||||+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         239 KNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             hhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence              01111       11235789999999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.7e-35  Score=274.79  Aligned_cols=209  Identities=18%  Similarity=0.258  Sum_probs=165.6

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ||+|+||.||+|+++.+|+.||+++....     .....+..|+++++.++||||+++++.+.+   +|++|||  +|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            79999999999999999999885443221     112346679999999999999999888654   8999999  6666


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ...                      .|+.|||+      .||+||||||+||+++.+   +.++|+|||++.........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~dikp~Nili~~~---~~~~l~Dfg~~~~~~~~~~~  151 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHS------MDIVYRDMKPENVLLDDQ---GNCRLSDLGLAVELKDGKTI  151 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH------CCEEEccCChHhEEEcCC---CCEEEeeceeeeecCCCcee
Confidence            433                      45666666      999999999999999875   88999999999876554444


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh----HHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD----SETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~----~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      ....|++.|+||               |+||++|+|++|+.||.+...    .+....+......++.   ..+++++++
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  228 (277)
T cd05607         152 TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEH---QNFTEESKD  228 (277)
T ss_pred             eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcccccccc---ccCCHHHHH
Confidence            456789999999               999999999999999976432    3344444433333322   368999999


Q ss_pred             HHHHhcccCCCCCCCH----HHHhcCccccCCcccc
Q psy6046         200 FIAKILIKNPMERMTA----KEALKHPWLMNKKQIM  231 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~----~e~l~hp~~~~~~~~~  231 (379)
                      ||.+||..||.+||++    ++++.||||+...+..
T Consensus       229 li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~~~~  264 (277)
T cd05607         229 ICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPR  264 (277)
T ss_pred             HHHHHhccCHhhCCCCccchhhhhcChhhcCCCHHH
Confidence            9999999999999999    7788999998876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=9.6e-36  Score=286.08  Aligned_cols=206  Identities=22%  Similarity=0.278  Sum_probs=164.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .||+|+||.||+|++..+|+.||+ |....    .....+.+|+.+++.++||||+++++++.+   +|+++||  +|.|
T Consensus        81 ~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  159 (353)
T PLN00034         81 RIGSGAGGTVYKVIHRPTGRLYAL-KVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSL  159 (353)
T ss_pred             hccCCCCeEEEEEEECCCCCEEEE-EEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcc
Confidence            799999999999999999999885 44422    123568899999999999999999998765   8999999  5555


Q ss_pred             hHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccccc
Q psy6046          81 YQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELLG  143 (379)
Q Consensus        81 ~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~g  143 (379)
                      ...                .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++...... ......|
T Consensus       160 ~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---~~~kL~DfG~~~~~~~~~~~~~~~~g  230 (353)
T PLN00034        160 EGTHIADEQFLADVARQILSGIAYLHR------RHIVHRDIKPSNLLINSA---KNVKIADFGVSRILAQTMDPCNSSVG  230 (353)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHH------CCEeecCCCHHHEEEcCC---CCEEEcccccceeccccccccccccc
Confidence            332                56777777      999999999999999985   899999999998764332 2345678


Q ss_pred             CCCCcch--------------------HHHHHHHHHhhCCCCCCCCChH---HHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         144 TPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDS---ETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       144 t~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      |..|+||                    |+||++|+|++|+.||......   .....+....   +......++.++++|
T Consensus       231 t~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~l  307 (353)
T PLN00034        231 TIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ---PPEAPATASREFRHF  307 (353)
T ss_pred             CccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccC---CCCCCCccCHHHHHH
Confidence            9999998                    8999999999999999743322   2222232221   222234689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||++|||+.|+++||||....
T Consensus       308 i~~~l~~~P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        308 ISCCLQREPAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             HHHHccCChhhCcCHHHHhcCcccccCC
Confidence            9999999999999999999999998764

>KOG0667|consensus

Probab=100.00  E-value=2.3e-36  Score=293.48  Aligned_cols=217  Identities=21%  Similarity=0.200  Sum_probs=173.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCC-C-----CCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIK-V-----EPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~-h-----pnIv~~~~~~~~---~~~v~e~   76 (379)
                      .++||+|+||.|-+|.+..|++.|| +|+++...  ..+...|+.||..|+ |     -|+|++++++..   .|+|+|+
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VA-IKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfEL  269 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVA-IKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFEL  269 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEE-EEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehh
Confidence            4599999999999999999999999 56554422  356788999999999 4     458999998764   9999999


Q ss_pred             -CchhhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          77 -RPPVYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        77 -~g~l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                       .-.||+.                .+.+.|+++.+||+.||||+||||+|||+.+.+. ..|||+|||.|+.....  .-
T Consensus       270 L~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r-~~vKVIDFGSSc~~~q~--vy  346 (586)
T KOG0667|consen  270 LSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKR-SRIKVIDFGSSCFESQR--VY  346 (586)
T ss_pred             hhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCc-CceeEEecccccccCCc--ce
Confidence             6677776                4566666666677799999999999999998643 58999999999876444  33


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-----------------
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-----------------  187 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-----------------  187 (379)
                      +++.++.|+||               |||||++||++|.+.|+|.+..+++..|..-.-.+|.                 
T Consensus       347 tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~  426 (586)
T KOG0667|consen  347 TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLK  426 (586)
T ss_pred             eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccC
Confidence            88999999999               9999999999999999999998888877331111000                 


Q ss_pred             -----------------------------------------cccc-CCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         188 -----------------------------------------ELFE-DISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       188 -----------------------------------------~~~~-~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                                                               .... .-...+.|||.+||.+||.+|+|+.++|+||||.
T Consensus       427 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~  506 (586)
T KOG0667|consen  427 GFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLT  506 (586)
T ss_pred             CceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCcccc
Confidence                                                     0000 1124578999999999999999999999999998


Q ss_pred             CCc
Q psy6046         226 NKK  228 (379)
Q Consensus       226 ~~~  228 (379)
                      ...
T Consensus       507 ~~~  509 (586)
T KOG0667|consen  507 GTS  509 (586)
T ss_pred             ccc
Confidence            544

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=8e-36  Score=283.15  Aligned_cols=208  Identities=21%  Similarity=0.270  Sum_probs=170.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHH-HHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQ-LLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~-il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||+||+|++..+|+.||+ |....      .....+..|.. +++.++||||+++++.+.+   +|++|||  +
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAV-KVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            699999999999999999998885 44332      12234555554 5688999999999887654   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++..... ..
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~givH~dikp~NIll~~~---~~~kl~Dfg~~~~~~~~~~  151 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHS------LNIIYRDLKPENILLDSQ---GHVVLTDFGLCKEGIEHSK  151 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCCCCHHHeEECCC---CcEEEeccCCCcccccCCC
Confidence            777554                    56777777      999999999999999885   8999999999875432 22


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|..||.+.+..+....+..+....++    .+++.+.++|
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~li  227 (323)
T cd05575         152 TTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKP----NISVSARHLL  227 (323)
T ss_pred             ccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHHH
Confidence            34456799999999               9999999999999999998888888888877665543    5799999999


Q ss_pred             HHhcccCCCCCCCH----HHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTA----KEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~----~e~l~hp~~~~~~~~~  231 (379)
                      .+||..||.+||++    .++++||||....+..
T Consensus       228 ~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~~~~  261 (323)
T cd05575         228 EGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDD  261 (323)
T ss_pred             HHHhhcCHHhCCCCCCCHHHHHcCCCcCCCCHHH
Confidence            99999999999987    6999999998866543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.4e-35  Score=280.75  Aligned_cols=207  Identities=22%  Similarity=0.313  Sum_probs=171.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHh-CCCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKL-IKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||+||+|++..+++.||+ |....      ........|..++.. ++||||+++++++.+   +|++|||  +
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAI-KALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEE-EEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            689999999999999999988884 44332      223456778888876 589999999998765   8899999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... ..
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~------~~ivHrdikp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~  151 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHS------KGIVYRDLKLDNILLDTD---GHIKIADFGMCKENMLGDA  151 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEeCCCCHHHEEECCC---CCEEEccCCcceECCCCCC
Confidence            777655                    45666666      999999999999999885   8999999999976432 22


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|..||.+.+..+....+......+|.    .++.++++||
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~li  227 (316)
T cd05619         152 KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPR----WLTREAKDIL  227 (316)
T ss_pred             ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc----cCCHHHHHHH
Confidence            34456799999999               9999999999999999998888888888776655443    4789999999


Q ss_pred             HHhcccCCCCCCCHH-HHhcCccccCCccc
Q psy6046         202 AKILIKNPMERMTAK-EALKHPWLMNKKQI  230 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~-e~l~hp~~~~~~~~  230 (379)
                      .+||..||.+||++. +++.||||....+.
T Consensus       228 ~~~l~~~P~~R~~~~~~l~~h~~~~~~~~~  257 (316)
T cd05619         228 VKLFVREPERRLGVKGDIRQHPFFREIDWS  257 (316)
T ss_pred             HHHhccCHhhcCCChHHHHcCcccCCCCHH
Confidence            999999999999996 89999999887654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=5.3e-36  Score=290.22  Aligned_cols=212  Identities=22%  Similarity=0.248  Sum_probs=170.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ...||+|+||.||+|++..+|+.||+ |+...      .....+.+|+.+|+.++||||+++++.+.+   +|++|||  
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~   84 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAM-KTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP   84 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEE-EEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCC
Confidence            45799999999999999999998884 54432      234568899999999999999999998765   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|..+... 
T Consensus        85 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivHrDlkp~Nill~~~---~~ikL~DFG~a~~~~~~~  155 (376)
T cd05598          85 GGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHK------MGFIHRDIKPDNILIDRD---GHIKLTDFGLCTGFRWTH  155 (376)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCCCCHHHEEECCC---CCEEEEeCCCCccccccc
Confidence            6777665                    56777777      999999999999999975   89999999997532100 


Q ss_pred             -------------------------------------------ccccccccCCCCcch---------------HHHHHHH
Q psy6046         136 -------------------------------------------IEIRELLGTPDYVGK---------------SLGVTAY  157 (379)
Q Consensus       136 -------------------------------------------~~~~~~~gt~~y~aP---------------SlGvil~  157 (379)
                                                                 ......+||+.|+||               |+||++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvily  235 (376)
T cd05598         156 DSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILY  235 (376)
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceee
Confidence                                                       001235799999999               9999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCC---CHHHHhcCccccCCccc
Q psy6046         158 VLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       158 ~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---t~~e~l~hp~~~~~~~~  230 (379)
                      +|++|+.||.+.+..+....+.......+.+....+++++.+||.+|+ .+|.+|+   |+.++++||||+...+.
T Consensus       236 ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~~  310 (376)
T cd05598         236 EMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDFA  310 (376)
T ss_pred             ehhhCCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCHH
Confidence            999999999998887777776654333333333468999999999976 5999999   99999999999876543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-35  Score=276.46  Aligned_cols=214  Identities=19%  Similarity=0.236  Sum_probs=168.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+||+|+||.||+|.+..+++.||+++....     .....+.+|+.+++.++||||+++++.+.+   +|++|||  +|
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGG   85 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCC
Confidence            4799999999999999999988885433221     112346789999999999999999988654   8999999  56


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .|...                      .|+.|||+      .||+||||||+||++++.   +.++|+|||++.......
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05605          86 DLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHR------ERIVYRDLKPENILLDDY---GHIRISDLGLAVEIPEGE  156 (285)
T ss_pred             cHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHH------CCcEecCCCHHHEEECCC---CCEEEeeCCCceecCCCC
Confidence            66433                      45666666      999999999999999875   889999999998765554


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+|++.|+||               |+||++|+|++|..||.+.+.......+.......+...+..+++.+.+||
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  236 (285)
T cd05605         157 TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSIC  236 (285)
T ss_pred             ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHH
Confidence            44556899999999               999999999999999988765443333322111112222345899999999


Q ss_pred             HHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      .+||..||++||     ++++++.||||....+..
T Consensus       237 ~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~  271 (285)
T cd05605         237 RQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKR  271 (285)
T ss_pred             HHHccCCHHHhcCCCCCCHHHHhcCcCccCCCHHH
Confidence            999999999999     899999999998866543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.9e-35  Score=279.77  Aligned_cols=208  Identities=24%  Similarity=0.322  Sum_probs=170.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHh-CCCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKL-IKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+++.||+ |....      ...+.+..|..++.. ++||||+++++++..   +|++|||  +
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAI-KALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            699999999999999999988884 54332      223446677777765 479999999988654   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-c
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-I  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~  136 (379)
                      |+|+..                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++..... .
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~------~~ivH~dlkp~Nill~~~---~~~kL~Dfg~a~~~~~~~~  151 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHK------KGIIYRDLKLDNVLLDKD---GHIKIADFGMCKENMNGEG  151 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEEeCCCCHHHeEECCC---CCEEEccCcCCeECCCCCC
Confidence            777654                    55667776      999999999999999875   89999999999865332 2


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .++.++.+||
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~ll  227 (316)
T cd05592         152 KASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPR----WISKEAKDCL  227 (316)
T ss_pred             ccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHHH
Confidence            34456799999999               9999999999999999999888888888766555443    5799999999


Q ss_pred             HHhcccCCCCCCCH-HHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTA-KEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~-~e~l~hp~~~~~~~~~  231 (379)
                      .+||..||.+||++ .+++.||||....+..
T Consensus       228 ~~~l~~~P~~R~~~~~~l~~h~~~~~~~~~~  258 (316)
T cd05592         228 SKLFERDPTKRLGVDGDIRQHPFFRGIDWER  258 (316)
T ss_pred             HHHccCCHHHcCCChHHHHcCcccCCCCHHH
Confidence            99999999999986 5889999998876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.3e-36  Score=289.69  Aligned_cols=207  Identities=16%  Similarity=0.105  Sum_probs=158.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-CchhhHH-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPVYQA-   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l~~~-   83 (379)
                      +.||+|+||.||+|.+..+++.||+ |...   ...+.+|+.+|+.|+||||+++++++..   .|+++|+ .+.++.. 
T Consensus        98 ~~lg~G~~g~V~~~~d~~~~~~vai-K~~~---~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~~~L~~~l  173 (391)
T PHA03212         98 ETFTPGAEGFAFACIDNKTCEHVVI-KAGQ---RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYCYL  173 (391)
T ss_pred             EEEcCCCCeEEEEEEECCCCCEEEE-echh---hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCCCCHHHHH
Confidence            4799999999999999999998885 4432   3457899999999999999999987653   7888888 6665544 


Q ss_pred             -------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC--ccccccc
Q psy6046          84 -------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG--IEIRELL  142 (379)
Q Consensus        84 -------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~--~~~~~~~  142 (379)
                                         .|+.|||+      +||+||||||+||+++..   +.+||+|||+++.....  ......+
T Consensus       174 ~~~~~l~~~~~~~i~~qi~~aL~ylH~------~~IvHrDiKP~NIll~~~---~~vkL~DFG~a~~~~~~~~~~~~~~~  244 (391)
T PHA03212        174 AAKRNIAICDILAIERSVLRAIQYLHE------NRIIHRDIKAENIFINHP---GDVCLGDFGAACFPVDINANKYYGWA  244 (391)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCChHhEEEcCC---CCEEEEeCCccccccccccccccccc
Confidence                               56777777      999999999999999875   88999999999753221  2234567


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCC-------hHHHHHHHHhCC------------------
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGET-------DSETFRNISKAQ------------------  182 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~-------~~~~~~~i~~~~------------------  182 (379)
                      ||+.|+||               |+||++|+|++|..||.+..       ....+..+....                  
T Consensus       245 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  324 (391)
T PHA03212        245 GTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEI  324 (391)
T ss_pred             CccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHH
Confidence            99999999               99999999999998875421       111122221100                  


Q ss_pred             --------CCCC--cccc---cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         183 --------LDFP--DELF---EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       183 --------~~~~--~~~~---~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                              ...+  ...|   ..++.++.+||.+||..||.+|||++|+|+||||+...
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~  383 (391)
T PHA03212        325 YIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIP  383 (391)
T ss_pred             HHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCC
Confidence                    0000  0001   13567899999999999999999999999999998754

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.5e-35  Score=282.09  Aligned_cols=209  Identities=21%  Similarity=0.249  Sum_probs=167.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++||+|+||.||+|++..+++.+|+ |....      .....+.+|+.++..+ +||||+++++++.+   +|+++||  
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~   79 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAM-KVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   79 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEE-EEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCC
Confidence            3699999999999999999998884 44332      2234577899888776 79999999998654   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cC
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DG  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~  135 (379)
                      +|+|...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++... ..
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~------~~ivH~Dikp~Nili~~~---~~~kL~DfG~~~~~~~~~  150 (329)
T cd05618          80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHE------RGIIYRDLKLDNVLLDSE---GHIKLTDYGMCKEGLRPG  150 (329)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCHHHEEECCC---CCEEEeeCCccccccCCC
Confidence            6666544                    56777777      999999999999999885   899999999997542 22


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC---------CChHHHHHHHHhCCCCCCccccc
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG---------ETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~---------~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ......+||+.|+||               |+||++|+|++|+.||..         .........+......+|.    
T Consensus       151 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~----  226 (329)
T cd05618         151 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR----  226 (329)
T ss_pred             CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCC----
Confidence            234557899999999               999999999999999952         1122344555555555554    


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCC------HHHHhcCccccCCcccc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMT------AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt------~~e~l~hp~~~~~~~~~  231 (379)
                      .++..+.+||.+||..||++|||      +.++++||||++..|..
T Consensus       227 ~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~~~~  272 (329)
T cd05618         227 SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDL  272 (329)
T ss_pred             CCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCCCHHH
Confidence            57999999999999999999998      58999999999876643

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.7e-35  Score=280.93  Aligned_cols=209  Identities=22%  Similarity=0.313  Sum_probs=173.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCC-cceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEP-IEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~---~~~v~e~-   76 (379)
                      ...||+|+||.||+|++..+++.||+ |+...      ...+.+..|+++++.+.|++ |+.+++++.+   +|++||| 
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAI-KILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (324)
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCC
Confidence            45799999999999999999988884 44332      23456788999999998765 7778776543   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.... .
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~dlkp~Nill~~~---~~~kL~Dfg~~~~~~~~  154 (324)
T cd05587          84 NGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHS------KGIIYRDLKLDNVMLDAE---GHIKIADFGMCKENIFG  154 (324)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHeEEcCC---CCEEEeecCcceecCCC
Confidence             7777654                    56777777      999999999999999985   899999999987532 2


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~  230 (324)
T cd05587         155 GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPK----SLSKEAVS  230 (324)
T ss_pred             CCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHH
Confidence            2234456799999999               9999999999999999999988888888887766654    58999999


Q ss_pred             HHHHhcccCCCCCCCH-----HHHhcCccccCCccc
Q psy6046         200 FIAKILIKNPMERMTA-----KEALKHPWLMNKKQI  230 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~-----~e~l~hp~~~~~~~~  230 (379)
                      ++.+||..||.+|+++     +++++||||....+.
T Consensus       231 li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~~~  266 (324)
T cd05587         231 ICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWE  266 (324)
T ss_pred             HHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCCCHH
Confidence            9999999999999976     899999999887654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=5e-36  Score=283.86  Aligned_cols=208  Identities=25%  Similarity=0.323  Sum_probs=174.0

Q ss_pred             cCcCCCCceEEEEEEE---cCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPE---KTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~---~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +.||+|+||.||++++   ..+|+.+|+ |....     .....+.+|+++++.++||||+++++++.+   +|+++|| 
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAM-KVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCC
Confidence            4699999999999886   357778874 44432     233457889999999999999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|++.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.....
T Consensus        81 ~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kL~Dfg~~~~~~~~  151 (318)
T cd05582          81 RGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS------LGIIYRDLKPENILLDEE---GHIKLTDFGLSKESIDH  151 (318)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCCHHHeEECCC---CcEEEeeccCCcccCCC
Confidence             6777665                    56777777      999999999999999875   89999999999765433


Q ss_pred             -ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 -IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 -~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                       ......+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+
T Consensus       152 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~  227 (318)
T cd05582         152 EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQ----FLSPEAQS  227 (318)
T ss_pred             CCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHH
Confidence             234456799999999               9999999999999999998888888888877766654    47999999


Q ss_pred             HHHHhcccCCCCCCC-----HHHHhcCccccCCccc
Q psy6046         200 FIAKILIKNPMERMT-----AKEALKHPWLMNKKQI  230 (379)
Q Consensus       200 li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~  230 (379)
                      ||.+||..||.+|||     +.+++.||||....+.
T Consensus       228 li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~~~  263 (318)
T cd05582         228 LLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWN  263 (318)
T ss_pred             HHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCCCHH
Confidence            999999999999999     7889999999876543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3.1e-35  Score=282.64  Aligned_cols=210  Identities=21%  Similarity=0.288  Sum_probs=163.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      +.||+|+||.||+|.+..+++.+|+++....    .....+.+|+.+++.++||||+++++++.         ..|++||
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e  102 (355)
T cd07874          23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVME  102 (355)
T ss_pred             EEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhh
Confidence            4799999999999999999999886544322    22356789999999999999999998753         2689999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .+.+...                  .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       103 ~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~givHrDikp~Nill~~~---~~~kl~Dfg~~~~~~~~~  173 (355)
T cd07874         103 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTSF  173 (355)
T ss_pred             hhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCChHHEEECCC---CCEEEeeCcccccCCCcc
Confidence            9 4444332                  56777777      999999999999999875   899999999998765544


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC-------------------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ-------------------  182 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~-------------------  182 (379)
                      ......||+.|+||               |+||++|+|++|+.||.+.+..+.+..+....                   
T Consensus       174 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (355)
T cd07874         174 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV  253 (355)
T ss_pred             ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHH
Confidence            45567899999999               99999999999999998876544433221110                   


Q ss_pred             --------CCCC-----------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         183 --------LDFP-----------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       183 --------~~~~-----------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                              ..++           .......+.++++||.+||..||++|||+.|+|.||||...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         254 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             hcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence                    0000           01112346788999999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.2e-36  Score=284.67  Aligned_cols=207  Identities=23%  Similarity=0.346  Sum_probs=172.0

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhC---CCCCcceeeeecCc---ceEEeeC--
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLI---KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l---~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ||+|+||+||+|++..+|+.||+ |.....      .......|..++..+   .||+|++++..+.+   +|++|||  
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAM-KVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEE-EEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence            79999999999999999998884 544321      223456677777766   69999999987654   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-C
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-G  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~  135 (379)
                      +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++..... .
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~------~~ivHrDlkp~Nili~~~---~~~kl~Dfg~a~~~~~~~  150 (330)
T cd05586          80 GGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHK------YDIVYRDLKPENILLDAT---GHIALCDFGLSKANLTDN  150 (330)
T ss_pred             CChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCCHHHeEECCC---CCEEEecCCcCcCCCCCC
Confidence            6777654                    56777777      999999999999999985   8999999999876432 2


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      ......+||+.|+||                |+||++|+|++|+.||.+.+..+.+..+..+...++..   .+++++.+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~  227 (330)
T cd05586         151 KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKN---VLSDEGRQ  227 (330)
T ss_pred             CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCc---cCCHHHHH
Confidence            234567899999999                99999999999999999998888888888887776653   47999999


Q ss_pred             HHHHhcccCCCCCC----CHHHHhcCccccCCccc
Q psy6046         200 FIAKILIKNPMERM----TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       200 li~~~L~~dP~~Rp----t~~e~l~hp~~~~~~~~  230 (379)
                      ||.+||..||.+||    ++.++++||||....+.
T Consensus       228 li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~~~~  262 (330)
T cd05586         228 FVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWD  262 (330)
T ss_pred             HHHHHcCCCHHHCCCCCCCHHHHhcCccccCCCHH
Confidence            99999999999998    79999999999876544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=7.9e-36  Score=283.88  Aligned_cols=213  Identities=23%  Similarity=0.280  Sum_probs=173.9

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ....||+|+||.||+|.+..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|++||| 
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (330)
T cd05601           5 VKSLVGRGHFGEVQVVREKATGDIYAM-KVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQ   83 (330)
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCC
Confidence            346899999999999999999998885 44332      123458899999999999999999887654   8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      .||+||||||+||+++..   +.+||+|||++.....
T Consensus        84 ~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~------~~i~H~Dlkp~NIll~~~---~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          84 PGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQ------MGYVHRDIKPENVLIDRT---GHIKLADFGSAARLTA  154 (330)
T ss_pred             CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEcccCchHheEECCC---CCEEeccCCCCeECCC
Confidence             6666654                     56677777      999999999999999975   8999999999987654


Q ss_pred             Ccc--ccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCccc
Q psy6046         135 GIE--IRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDEL  189 (379)
Q Consensus       135 ~~~--~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~  189 (379)
                      ...  .....||+.|+||                     |+||++|+|++|+.||.+.+....+..+....  ..+|.  
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~--  232 (330)
T cd05601         155 NKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPE--  232 (330)
T ss_pred             CCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCC--
Confidence            332  2335789999998                     89999999999999999888877777776543  22332  


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      ...+++++.+||.+||. +|++|||+++++.||||....+...
T Consensus       233 ~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~~~~~~  274 (330)
T cd05601         233 DPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKIDWNNI  274 (330)
T ss_pred             CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCCCHHHH
Confidence            23589999999999998 9999999999999999998765543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.2e-35  Score=284.23  Aligned_cols=212  Identities=21%  Similarity=0.264  Sum_probs=172.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +.||+|+||.||+|++..+++.+|+ |....      .....+.+|+.+++.++||||+++++.+.+   +|++|||  +
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~ai-K~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAM-KLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPG  127 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEE-EEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            4899999999999999999998884 54432      223457889999999999999999988765   8999999  6


Q ss_pred             chhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          78 PPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      |+|...                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......  
T Consensus       128 g~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDLkp~NIll~~~---~~ikL~DfG~a~~~~~~~~~  198 (371)
T cd05622         128 GDLVNLMSNYDVPEKWARFYTAEVVLALDAIHS------MGFIHRDVKPDNMLLDKS---GHLKLADFGTCMKMNKEGMV  198 (371)
T ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCEEeCCCCHHHEEECCC---CCEEEEeCCceeEcCcCCcc
Confidence            777655                   56777777      999999999999999875   899999999998764332  


Q ss_pred             cccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .....+||+.|+||                   |+||++|+|++|.+||.+.+....+..+......++.+....++..+
T Consensus       199 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  278 (371)
T cd05622         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEA  278 (371)
T ss_pred             cccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHH
Confidence            23456799999999                   99999999999999999998888888887654333222334789999


Q ss_pred             HHHHHHhcccCCCC--CCCHHHHhcCccccCCccc
Q psy6046         198 KDFIAKILIKNPME--RMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       198 ~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~  230 (379)
                      ++||.+||..+|.+  |++++++++||||.+..+.
T Consensus       279 ~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~~~~  313 (371)
T cd05622         279 KNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWA  313 (371)
T ss_pred             HHHHHHHcCChhhhcCCCCHHHHhcCcccCCCChh
Confidence            99999999844433  7799999999999876543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.6e-35  Score=280.82  Aligned_cols=210  Identities=24%  Similarity=0.313  Sum_probs=165.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+++.||+++....    .....+.+|+.+++.++||||+++++++.         ..|++++
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~  100 (343)
T cd07878          21 TPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTN  100 (343)
T ss_pred             eecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEee
Confidence            4899999999999999999998885444322    22345779999999999999999987653         3688999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      + ++.+...                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... 
T Consensus       101 ~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivHrdikp~Nil~~~~---~~~kl~Dfg~~~~~~~-  170 (343)
T cd07878         101 LMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHS------AGIIHRDLKPSNVAVNED---CELRILDFGLARQADD-  170 (343)
T ss_pred             cCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecccCChhhEEECCC---CCEEEcCCccceecCC-
Confidence            8 5555443                   56777777      999999999999999975   8999999999987543 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC---------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD---------------  184 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~---------------  184 (379)
                       .....+||+.|+||                |+||++|+|++|+.||.+.+..+.+..+......               
T Consensus       171 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07878         171 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHAR  249 (343)
T ss_pred             -CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHH
Confidence             23456789999999                9999999999999999887665555444321110               


Q ss_pred             --------CCc----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         185 --------FPD----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       185 --------~~~----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                              .+.    ..+...++.+.+||.+||..||.+|||+.|+|.||||.....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~  306 (343)
T cd07878         250 KYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHD  306 (343)
T ss_pred             HHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCC
Confidence                    010    112346778999999999999999999999999999987653

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0612|consensus

Probab=100.00  E-value=1.5e-36  Score=307.79  Aligned_cols=216  Identities=25%  Similarity=0.326  Sum_probs=187.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|+||.|..++++.|++.|| .|+++.      .+...|..|-.||..-+.+.|+++++.|++   +|+||||  ||
T Consensus        82 vIGrGaFGEV~lVr~k~t~~VYA-MK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGG  160 (1317)
T KOG0612|consen   82 VIGRGAFGEVALVRHKSTEKVYA-MKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPGG  160 (1317)
T ss_pred             HhcccccceeEEEEeeccccchh-HHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccCc
Confidence            89999999999999999999999 555544      233558889999999999999999999987   8999999  88


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cc-
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GI-  136 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~-  136 (379)
                      +|...                    .|+.-+|+      .|+|||||||+|||++..   |++||+|||.|-.+.. +. 
T Consensus       161 DlltLlSk~~~~pE~~ArFY~aEiVlAldslH~------mgyVHRDiKPDNvLld~~---GHikLADFGsClkm~~dG~V  231 (1317)
T KOG0612|consen  161 DLLTLLSKFDRLPEDWARFYTAEIVLALDSLHS------MGYVHRDIKPDNVLLDKS---GHIKLADFGSCLKMDADGTV  231 (1317)
T ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh------ccceeccCCcceeEeccc---CcEeeccchhHHhcCCCCcE
Confidence            88777                    56777777      999999999999999996   9999999999977653 33 


Q ss_pred             cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC--CCCCCcccccCCC
Q psy6046         137 EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA--QLDFPDELFEDIS  194 (379)
Q Consensus       137 ~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~s  194 (379)
                      .....+|||.|++|                    |+||++|||+.|..||.+.+..+.+.+|.+.  .+.||..  ..+|
T Consensus       232 ~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~--~~VS  309 (1317)
T KOG0612|consen  232 RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDE--TDVS  309 (1317)
T ss_pred             EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcc--cccC
Confidence            34567899999999                    9999999999999999999999999999886  6788843  2599


Q ss_pred             HHHHHHHHHhcccCCCCCCC---HHHHhcCccccCCcccccccCCCC
Q psy6046         195 PEAKDFIAKILIKNPMERMT---AKEALKHPWLMNKKQIMTRVGCSS  238 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt---~~e~l~hp~~~~~~~~~~~~~~~~  238 (379)
                      +++++||.+++. +|..|..   ++++..||||.+..|...+....+
T Consensus       310 eeakdLI~~ll~-~~e~RLgrngiedik~HpFF~g~~W~~iR~~~pP  355 (1317)
T KOG0612|consen  310 EEAKDLIEALLC-DREVRLGRNGIEDIKNHPFFEGIDWDNIRESVPP  355 (1317)
T ss_pred             HHHHHHHHHHhc-ChhhhcccccHHHHHhCccccCCChhhhhhcCCC
Confidence            999999999987 6999998   999999999999998765544333

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.3e-35  Score=285.35  Aligned_cols=212  Identities=20%  Similarity=0.248  Sum_probs=167.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e   75 (379)
                      .+.||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+++.++||||+++++++.        ..|+++|
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e   84 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTE   84 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEee
Confidence            35899999999999999999999986544322    22356889999999999999999988754        3689999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | .+.+...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....
T Consensus        85 ~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivH~dlkp~Nili~~~---~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          85 LMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHS------AGILHRDIKPGNLLVNSN---CVLKICDFGLARVEEP  155 (372)
T ss_pred             ccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCChHHEEECCC---CCEEeccccceeeccc
Confidence            9 4444433                    56777777      999999999999999985   8999999999986543


Q ss_pred             Cc--cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC---------------
Q psy6046         135 GI--EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA---------------  181 (379)
Q Consensus       135 ~~--~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~---------------  181 (379)
                      ..  ......+|+.|+||                |+||++|+|++|++||.+.+..+.+..+...               
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~  235 (372)
T cd07853         156 DESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEG  235 (372)
T ss_pred             CccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHH
Confidence            22  23345688999999                9999999999999999988776665554321               


Q ss_pred             --------CCCCCc-----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         182 --------QLDFPD-----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       182 --------~~~~~~-----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                              ....+.     ......++++.+||.+||..||.+|||+.|+|+||||.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  295 (372)
T cd07853         236 ARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEGR  295 (372)
T ss_pred             HHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCCc
Confidence                    111110     11234689999999999999999999999999999998754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.4e-35  Score=285.61  Aligned_cols=211  Identities=26%  Similarity=0.313  Sum_probs=172.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.||+ |+...      .....+.+|+.++..++||+|+++++.+.+   +|++|||  +
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKDTGHIYAM-KILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPG   85 (360)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEE-EEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            4899999999999999999998884 54432      223568889999999999999999988765   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++....... 
T Consensus        86 g~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~------~givHrDLkp~NIli~~~---~~vkL~DfG~~~~~~~~~~  156 (360)
T cd05627          86 GDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQ------LGFIHRDIKPDNLLLDAK---GHVKLSDFGLCTGLKKAHR  156 (360)
T ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEccCCCHHHEEECCC---CCEEEeeccCCcccccccc
Confidence            777665                    56777777      999999999999999875   899999999987542110 


Q ss_pred             -----------------------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCC
Q psy6046         137 -----------------------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPF  166 (379)
Q Consensus       137 -----------------------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf  166 (379)
                                                         .....+||+.|+||               |+||++|+|++|++||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf  236 (360)
T cd05627         157 TEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPF  236 (360)
T ss_pred             cccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCC
Confidence                                               01235799999999               9999999999999999


Q ss_pred             CCCChHHHHHHHHhCC--CCCCcccccCCCHHHHHHHHHhcccCCCCCC---CHHHHhcCccccCCccccc
Q psy6046         167 GGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       167 ~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---t~~e~l~hp~~~~~~~~~~  232 (379)
                      .+.+..+....+....  ..+|+.  ..+++++++||.+|+ .||.+|+   ++++++.||||.+..|...
T Consensus       237 ~~~~~~~~~~~i~~~~~~~~~p~~--~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~~~  304 (360)
T cd05627         237 CSETPQETYRKVMNWKETLVFPPE--VPISEKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGVDWGHI  304 (360)
T ss_pred             CCCCHHHHHHHHHcCCCceecCCC--CCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCCCHHHH
Confidence            9998888888777533  333432  247999999999987 4999999   5899999999999877654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3.7e-35  Score=278.60  Aligned_cols=211  Identities=20%  Similarity=0.274  Sum_probs=175.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...||+|+||.||+|++..+++.||+ |....      ........|..++..+. ||+|+++++++.+   +|++||| 
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAI-KILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCC
Confidence            45899999999999999999988884 44332      22345677888888775 7889988887654   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                       +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... 
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~Nill~~~---~~~kL~DfG~~~~~~~~  154 (323)
T cd05616          84 NGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHS------KGIIYRDLKLDNVMLDSE---GHIKIADFGMCKENMWD  154 (323)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEEecCCCHHHeEECCC---CcEEEccCCCceecCCC
Confidence             6777655                    56777777      999999999999999986   8999999999976432 


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~  230 (323)
T cd05616         155 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK----SMSKEAVA  230 (323)
T ss_pred             CCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----cCCHHHHH
Confidence            2234557899999999               9999999999999999999988899988887776664    58999999


Q ss_pred             HHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         200 FIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       200 li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      ++.+||..||.+|++     ..++++||||+...|...
T Consensus       231 li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~~~~~  268 (323)
T cd05616         231 ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL  268 (323)
T ss_pred             HHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCCHHHH
Confidence            999999999999997     489999999998776543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0577|consensus

Probab=100.00  E-value=1.5e-35  Score=282.77  Aligned_cols=240  Identities=17%  Similarity=0.201  Sum_probs=191.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP-   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~-   79 (379)
                      -||.|+||.||-|++..+.+.||++|..-.     ...+.+++|+..|+.|+|||++.|.+++-.   .|+|||| -|+ 
T Consensus        33 EIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClGSA  112 (948)
T KOG0577|consen   33 EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLGSA  112 (948)
T ss_pred             HhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhccH
Confidence            599999999999999999988886554322     234679999999999999999999988653   7999999 332 


Q ss_pred             --hhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 --VYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 --l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                        +.+.                  .|+.|||+      ++.||||||..|||+++.   |.|||+|||.|...   .+.+
T Consensus       113 sDlleVhkKplqEvEIAAi~~gaL~gLaYLHS------~~~IHRDiKAGNILLse~---g~VKLaDFGSAsi~---~PAn  180 (948)
T KOG0577|consen  113 SDLLEVHKKPLQEVEIAAITHGALQGLAYLHS------HNRIHRDIKAGNILLSEP---GLVKLADFGSASIM---APAN  180 (948)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHH------hhHHhhhccccceEecCC---Ceeeeccccchhhc---Cchh
Confidence              3322                  56788888      999999999999999985   99999999998764   3468


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      +++|||+||||                  |||++..+|...+||+...+....+.-|.....+...  ...+|..++.|+
T Consensus       181 sFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLq--s~eWS~~F~~Fv  258 (948)
T KOG0577|consen  181 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQ--SNEWSDYFRNFV  258 (948)
T ss_pred             cccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCC--CchhHHHHHHHH
Confidence            89999999999                  9999999999999999999888888777765433221  246899999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCcccccccCCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHh
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKS  281 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~  281 (379)
                      ..||.+-|.+|||.+++|.|+|+...++.                   ..+...+++.+.++    .+.++.+-..|++-
T Consensus       259 d~CLqKipqeRptse~ll~H~fv~R~Rp~-------------------tvi~dLIqRTKdaV----rELDNlqYrKMkKi  315 (948)
T KOG0577|consen  259 DSCLQKIPQERPTSEELLKHRFVLRERPP-------------------TVIMDLIQRTKDAV----RELDNLQYRKMKKI  315 (948)
T ss_pred             HHHHhhCcccCCcHHHHhhcchhccCCCc-------------------hHHHHHHHHHHHHH----HHhhhhhHHHHHHH
Confidence            99999999999999999999999765532                   24556666666644    34445455566666


Q ss_pred             hhhcc
Q psy6046         282 ALLKY  286 (379)
Q Consensus       282 ~~~~~  286 (379)
                      .++..
T Consensus       316 lf~e~  320 (948)
T KOG0577|consen  316 LFQEA  320 (948)
T ss_pred             Hhhcc
Confidence            66543

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.7e-35  Score=278.31  Aligned_cols=209  Identities=21%  Similarity=0.250  Sum_probs=170.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHH-HHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQ-LLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~-il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++||+|+||.||+|++..+|+.||+ |....      .....+.+|.. +++.++||||+++++.+.+   .|++|||  
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAV-KVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN   79 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEE-EEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            3799999999999999999988884 44332      12234555654 6889999999999987654   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-C
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-G  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~  135 (379)
                      +|+|+..                    .|+.|||+      .||+||||||+||+++.+   +.+||+|||+++.... .
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~~~~~~~~~  150 (321)
T cd05603          80 GGELFFHLQRERCFLEPRARFYAAEVASAIGYLHS------LNIIYRDLKPENILLDSQ---GHVVLTDFGLCKEGVEPE  150 (321)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCCHHHeEECCC---CCEEEccCCCCccCCCCC
Confidence            6776554                    56777777      999999999999999885   8999999999875322 2


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......+||+.|+||               |+||++|+|++|.+||.+.+.......+......+|.    ..+..+.++
T Consensus       151 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~l  226 (321)
T cd05603         151 ETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPG----GKTVAACDL  226 (321)
T ss_pred             CccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHH
Confidence            234456799999999               9999999999999999998888888888877666554    478999999


Q ss_pred             HHHhcccCCCCCCCH----HHHhcCccccCCcccc
Q psy6046         201 IAKILIKNPMERMTA----KEALKHPWLMNKKQIM  231 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~----~e~l~hp~~~~~~~~~  231 (379)
                      |.+||..||.+||++    .++++||||....+..
T Consensus       227 i~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~~~~~  261 (321)
T cd05603         227 LVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDD  261 (321)
T ss_pred             HHHHccCCHhhcCCCCCCHHHHhCCCCcCCCCHHH
Confidence            999999999999975    5999999998766544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=7.1e-35  Score=271.47  Aligned_cols=207  Identities=18%  Similarity=0.227  Sum_probs=161.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhC---CCCCcceeeeecCc--------ce
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLI---KVEPIEKYYSLDPE--------PL   71 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l---~hpnIv~~~~~~~~--------~~   71 (379)
                      ...||+|+||.||+|+++.+|+.+|+ |.....     ....+.+|+.+++.+   +||||+++++++.+        ++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~   83 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVAL-KSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVT   83 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEE-EEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEE
Confidence            35799999999999999999998885 443321     123467788877766   69999999987542        68


Q ss_pred             EEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          72 LGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        72 ~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      +++|+ .+.+...                      .|+.|||+      .||+||||||+||+++.+   +.+||+|||+
T Consensus        84 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~dikp~Nili~~~---~~~kl~dfg~  154 (288)
T cd07863          84 LVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA------NCIVHRDLKPENILVTSG---GQVKLADFGL  154 (288)
T ss_pred             EEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CCEEECccCc
Confidence            99998 4443332                      56777777      999999999999999875   8999999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC----------
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL----------  183 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~----------  183 (379)
                      ++............||+.|+||               |+||++|+|++|.+||.+.+..+.+..+.....          
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07863         155 ARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRD  234 (288)
T ss_pred             cccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCccc
Confidence            9876544444556789999999               999999999999999988777666555433100          


Q ss_pred             -C-----C-------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 -D-----F-------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 -~-----~-------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                       .     +       .....+.++..+.+||.+||..||++|||+.+++.||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         235 VTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             ccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence             0     0       011224578899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=7.9e-35  Score=273.33  Aligned_cols=214  Identities=20%  Similarity=0.205  Sum_probs=166.5

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cc
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RP   78 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g   78 (379)
                      ...+.||+|+||.||+|.+..+++.||++.....   .....+.+|+.+++.++||||+++++++.+   .|+++|| .+
T Consensus         9 ~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~~   88 (301)
T cd07873           9 IKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDK   88 (301)
T ss_pred             EEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEecccc
Confidence            3445899999999999999999988885433222   223467899999999999999999998765   7899999 54


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      .+...                     .|+.|||+      .||+||||||+||+++.+   +.++|+|||++....... 
T Consensus        89 ~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~dfg~~~~~~~~~~  159 (301)
T cd07873          89 DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHR------RKVLHRDLKPQNLLINER---GELKLADFGLARAKSIPTK  159 (301)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCCHHHEEECCC---CcEEECcCcchhccCCCCC
Confidence            44433                     56677776      999999999999999985   899999999997643222 


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-----------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-----------------  183 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-----------------  183 (379)
                      ......+++.|+||                |+||++|+|++|++||.+.+..+....+.....                 
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
T cd07873         160 TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFK  239 (301)
T ss_pred             cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhcccccc
Confidence            22345678889999                999999999999999998877665554432110                 


Q ss_pred             --CCCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         184 --DFPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       184 --~~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        .++.       .....+++++++||.+||..||.+|||++++++||||+...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~  293 (301)
T cd07873         240 SYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLG  293 (301)
T ss_pred             ccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence              0110       11235789999999999999999999999999999997654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.6e-35  Score=279.82  Aligned_cols=208  Identities=21%  Similarity=0.241  Sum_probs=170.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHH-HHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQ-LLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~-il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+|+.+|+ |+...      .....+..|.. +++.++||||+++++.+.+   +|++|||  +
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAV-KVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            699999999999999999998884 54432      22234555654 5788999999999887654   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~  136 (379)
                      |+++..                    .|+.|||+      .||+||||||+|||++.+   +.+||+|||+++.... ..
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~------~givH~Dlkp~NIll~~~---~~~kL~DfG~~~~~~~~~~  151 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHS------INIVYRDLKPENILLDSQ---GHVVLTDFGLCKEGIAQSD  151 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCHHHeEECCC---CCEEEeecCCcccCCCCCC
Confidence            777654                    56777777      999999999999999985   8999999999875432 22


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|.+||.+.+..+....+.......++    ..+..+.++|
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll  227 (325)
T cd05604         152 TTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRP----GASLTAWSIL  227 (325)
T ss_pred             CcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCC----CCCHHHHHHH
Confidence            34556799999999               9999999999999999998888888888777655443    5799999999


Q ss_pred             HHhcccCCCCCCCH----HHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTA----KEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~----~e~l~hp~~~~~~~~~  231 (379)
                      .+||..+|.+||++    .+++.||||....+..
T Consensus       228 ~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~~~~~  261 (325)
T cd05604         228 EELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTD  261 (325)
T ss_pred             HHHhccCHHhcCCCCCCHHHHhcCCCcCCCCHHH
Confidence            99999999999976    5999999998766543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=8.8e-35  Score=276.53  Aligned_cols=209  Identities=19%  Similarity=0.206  Sum_probs=168.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+++.+|+ |....      .....+.+|+.++..+ +||+|+.+++++.+   +|++|||  +
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAM-KVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            699999999999999999988884 44432      2234578999999888 59999999988654   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... ...
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~------~~ivHrDlkp~Nili~~~---~~~kl~Dfg~~~~~~~~~~  151 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHE------RGIIYRDLKLDNVLLDAD---GHIKLTDYGMCKEGLGPGD  151 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHEEEeCC---CCEEEeccccceeccCCCC
Confidence            777554                    56777777      999999999999999886   889999999997532 223


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC-------ChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE-------TDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .....+||+.|+||               |+||++|+|++|..||...       ........+......+|.    .+|
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~  227 (327)
T cd05617         152 TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPR----FLS  227 (327)
T ss_pred             ceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCC----CCC
Confidence            34567899999999               9999999999999999532       223344555555555543    589


Q ss_pred             HHHHHHHHHhcccCCCCCCC------HHHHhcCccccCCccccc
Q psy6046         195 PEAKDFIAKILIKNPMERMT------AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt------~~e~l~hp~~~~~~~~~~  232 (379)
                      ..+.++|.+||..||++|++      ++++++||||....|...
T Consensus       228 ~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~~~~~  271 (327)
T cd05617         228 VKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWDLL  271 (327)
T ss_pred             HHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCCHHHH
Confidence            99999999999999999997      579999999998876543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.1e-34  Score=276.41  Aligned_cols=210  Identities=20%  Similarity=0.256  Sum_probs=163.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|++..+|..+| +|.....    ....+.+|+++|+.++||||+++++++.+   ++++|||  +|+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a-~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   89 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMA-RKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   89 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEE-EEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCc
Confidence            489999999999999999998888 4544332    23568999999999999999999998654   8999999  667


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |.+.                    .|+.|||+     ..+|+||||||+||+++.+   +.+||+|||++...... ...
T Consensus        90 L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~-----~~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~-~~~  160 (331)
T cd06649          90 LDQVLKEAKRIPEEILGKVSIAVLRGLAYLRE-----KHQIMHRDVKPSNILVNSR---GEIKLCDFGVSGQLIDS-MAN  160 (331)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh-----cCCEEcCCCChhhEEEcCC---CcEEEccCccccccccc-ccc
Confidence            7655                    45566664     1369999999999999885   88999999999765432 344


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC---------------------
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL---------------------  183 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~---------------------  183 (379)
                      ...||+.|+||               |+||++|+|++|+.||...+..+....+.....                     
T Consensus       161 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (331)
T cd06649         161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPV  240 (331)
T ss_pred             cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccc
Confidence            56799999999               999999999999999987665444332211000                     


Q ss_pred             -----------------------CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         184 -----------------------DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       184 -----------------------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                             ..+......+++++++||.+||..||++|||+.++++||||+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  308 (331)
T cd06649         241 SGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSE  308 (331)
T ss_pred             cccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhcc
Confidence                                   001111124688999999999999999999999999999997543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=4.7e-35  Score=278.10  Aligned_cols=208  Identities=21%  Similarity=0.276  Sum_probs=169.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHH-HHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEE-QLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~-~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +||+|+||.||+|++..+++.|| +|+...      .....+..|. .+++.++||||+++++.+.+   +|++|||  +
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYA-VKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEE-EEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            69999999999999999998888 454432      1122344454 45788999999999888654   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Cc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~  136 (379)
                      |+++..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... ..
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~giiHrDlkp~Nili~~~---~~~kl~DfG~a~~~~~~~~  151 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHS------LNIVYRDLKPENILLDSQ---GHIVLTDFGLCKENIEHNG  151 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHeEECCC---CCEEEccCCCCcccccCCC
Confidence            666654                    55667776      999999999999999875   8999999999976432 22


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+......++    +.+++.+.++|
T Consensus       152 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~li  227 (325)
T cd05602         152 TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLK----PNITNSARHLL  227 (325)
T ss_pred             CcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCC----CCCCHHHHHHH
Confidence            34557899999999               999999999999999999888888888877665544    35899999999


Q ss_pred             HHhcccCCCCCCCHH----HHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTAK----EALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~----e~l~hp~~~~~~~~~  231 (379)
                      .+||..||.+||++.    ++++|+||....|..
T Consensus       228 ~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~~~~~  261 (325)
T cd05602         228 EGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDD  261 (325)
T ss_pred             HHHcccCHHHCCCCCCCHHHHhcCcccCCCCHHH
Confidence            999999999999865    899999998776543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=3.3e-35  Score=279.85  Aligned_cols=211  Identities=24%  Similarity=0.287  Sum_probs=166.9

Q ss_pred             CccCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceE
Q psy6046           7 ASHVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~   72 (379)
                      ..+.||+|+||.||+|++.   .+|+.||+ |+...       ...+.+.+|+.+++.++ ||+|+++++++.+   +|+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (332)
T cd05614           4 LLKVLGTGAYGKVFLVRKVTGHDTGKLYAM-KVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHL   82 (332)
T ss_pred             EEEEEeecCCEEEEEEEEcccCCCCCEEEE-EEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEE
Confidence            3458999999999998864   46777774 54432       12345788999999995 9999999888664   789


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|||  +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++
T Consensus        83 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivHrDlkp~Nili~~~---~~~kl~DfG~~~  153 (332)
T cd05614          83 ILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHK------LGIVYRDIKLENILLDSE---GHVVLTDFGLSK  153 (332)
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcEecCCCHHHeEECCC---CCEEEeeCcCCc
Confidence            9999  7777665                    56777777      999999999999999885   899999999998


Q ss_pred             eeccCc--cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCC----ChHHHHHHHHhCCCCCCcc
Q psy6046         131 VILDGI--EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       131 ~~~~~~--~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~----~~~~~~~~i~~~~~~~~~~  188 (379)
                      ......  .....+||+.|+||                |+||++|+|++|+.||...    ........+......++  
T Consensus       154 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~--  231 (332)
T cd05614         154 EFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFP--  231 (332)
T ss_pred             cccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCC--
Confidence            654322  23356799999999                9999999999999999643    23344445554444433  


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                        ..+++.+.+||.+||..||++||     +++++++||||....+..
T Consensus       232 --~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~  277 (332)
T cd05614         232 --SFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEA  277 (332)
T ss_pred             --CCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCCCHHH
Confidence              35899999999999999999999     889999999998866543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0589|consensus

Probab=100.00  E-value=1.2e-35  Score=281.67  Aligned_cols=214  Identities=21%  Similarity=0.178  Sum_probs=186.3

Q ss_pred             CCccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEe
Q psy6046           3 TDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGL   74 (379)
Q Consensus         3 ~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~   74 (379)
                      .++-..+++|+|+||.+++++++..++.+|++++.-.    ..+....+|+.+++++.|||||.|++.+.+    .|++|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            3344557999999999999999999999885554332    234568999999999999999999999876    79999


Q ss_pred             eC--CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          75 NP--RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        75 e~--~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|  +|++.+.                      .|++|||.      .+|+|||||+.||+++.+   +.|||+|||+|+
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~------~~iLHRDlK~~Nifltk~---~~VkLgDfGlaK  154 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE------NRVLHRDLKCANIFLTKD---KKVKLGDFGLAK  154 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh------hhhhcccchhhhhhcccc---Cceeecchhhhh
Confidence            99  7777777                      67888888      999999999999999997   788999999999


Q ss_pred             eeccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         131 VILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       131 ~~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .+.... ...+.+|||.||.|               ||||++|||++-+++|.+.+...+..+|.++.+...+   ...|
T Consensus       155 ~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp---~~ys  231 (426)
T KOG0589|consen  155 ILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLP---SMYS  231 (426)
T ss_pred             hcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCC---cccc
Confidence            987665 67788999999999               9999999999999999999999999999988744322   3689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+++.+|+.||..+|..||++.++|.+|......
T Consensus       232 ~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~~~~  265 (426)
T KOG0589|consen  232 SELRSLVKSMLRKNPEHRPSALELLRRPHLLRYL  265 (426)
T ss_pred             HHHHHHHHHHhhcCCccCCCHHHHhhChhhhhHH
Confidence            9999999999999999999999999999887443

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.1e-34  Score=273.97  Aligned_cols=212  Identities=16%  Similarity=0.214  Sum_probs=153.4

Q ss_pred             CccCcCCCCceEEEEEEEcC--CCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-Cc
Q psy6046           7 ASHVGGNRARSSCSRKPEKT--TKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-RP   78 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-~g   78 (379)
                      .+..||+|+||.||+|++..  ++..+|++..........+.+|+.+++.++||||+++++++.     ..|+++|| ++
T Consensus         5 ~g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           5 EGCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            44589999999999999765  456677544433333456889999999999999999998763     26899999 44


Q ss_pred             hhhHH-----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec-CCCCcEEEeeccc
Q psy6046          79 PVYQA-----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFEI  128 (379)
Q Consensus        79 ~l~~~-----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG~  128 (379)
                      .++..                             .|+.|||+      .||+||||||+||++... ..++.+||+|||+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA------NWVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh------CCEEcCCCCHHHEEEccCCCCCCcEEEeeccc
Confidence            43221                             55666776      999999999999999543 1247899999999


Q ss_pred             ceeeccCc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChH---------HHHHHHH
Q psy6046         129 SRVILDGI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDS---------ETFRNIS  179 (379)
Q Consensus       129 a~~~~~~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~---------~~~~~i~  179 (379)
                      ++......    ......||+.|+||                |+||++|+|+||++||......         ..+..+.
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~  238 (317)
T cd07867         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIF  238 (317)
T ss_pred             eeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHH
Confidence            98764322    23345789999999                9999999999999999653321         1111111


Q ss_pred             hCC--------------CCCC--------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         180 KAQ--------------LDFP--------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       180 ~~~--------------~~~~--------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ...              ..++                    .......+..+.+||.+||..||.+|||++|+|+||||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         239 SVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             HhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            000              0000                    00011245678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=7.9e-35  Score=290.44  Aligned_cols=208  Identities=24%  Similarity=0.250  Sum_probs=171.5

Q ss_pred             ccCcCCCCceEEEEEEEcCC-CcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-KREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-g~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .++||+|+||.||+|.+..+ +..+|+ |....   .....+.+|+.+|+.++||||+++++.+.+   +|++|||  +|
T Consensus        72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~-K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg  150 (478)
T PTZ00267         72 TTLVGRNPTTAAFVATRGSDPKEKVVA-KFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGG  150 (478)
T ss_pred             EEEEEeCCCcEEEEEEEcCCCCeEEEE-EEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCC
Confidence            34899999999999998888 555664 44332   223457889999999999999999998764   8999999  77


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|.+.                        .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....
T Consensus       151 ~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~------~~ivHrDlkp~NIll~~~---~~~kL~DFgla~~~~~  221 (478)
T PTZ00267        151 DLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS------RKMMHRDLKSANIFLMPT---GIIKLGDFGFSKQYSD  221 (478)
T ss_pred             CHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCEEECCcCHHhEEECCC---CcEEEEeCcCceecCC
Confidence            77542                        45666666      999999999999999975   8999999999987654


Q ss_pred             Cc---cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         135 GI---EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       135 ~~---~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..   .....+||+.|+||               |+||++|+|++|+.||.+.+..+.+..+..+.....+   ..++++
T Consensus       222 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~s~~  298 (478)
T PTZ00267        222 SVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFP---CPVSSG  298 (478)
T ss_pred             ccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC---ccCCHH
Confidence            32   23456799999999               9999999999999999998888888888776554222   358899


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+||.+||..||++|||+.+++.|||++...
T Consensus       299 ~~~li~~~L~~dP~~Rps~~~~l~~~~~~~~~  330 (478)
T PTZ00267        299 MKALLDPLLSKNPALRPTTQQLLHTEFLKYVA  330 (478)
T ss_pred             HHHHHHHHhccChhhCcCHHHHHhCHHHHHHH
Confidence            99999999999999999999999999996543

>KOG0986|consensus

Probab=100.00  E-value=6.6e-36  Score=277.83  Aligned_cols=218  Identities=20%  Similarity=0.254  Sum_probs=175.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEe----ccccc-chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKE----RNVSQ-GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~----~~~~~-~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      |||+|+||.||.++-+.||+.||.+|.    +.... ....+.|-.||.+++.|.||.+-+.+++   +|+|+.+  ||+
T Consensus       192 vlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNGGD  271 (591)
T KOG0986|consen  192 VLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNGGD  271 (591)
T ss_pred             EEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecCCc
Confidence            999999999999999999999995322    22222 2347899999999999999999888876   8999988  444


Q ss_pred             hhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          80 VYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        80 l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                      |-=.                -|.+.+..+..+|..+||+|||||+|||+|+.   |+++|+|+|+|..++.+......+|
T Consensus       272 LkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~---GhvRISDLGLAvei~~g~~~~~rvG  348 (591)
T KOG0986|consen  272 LKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDH---GHVRISDLGLAVEIPEGKPIRGRVG  348 (591)
T ss_pred             eeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccC---CCeEeeccceEEecCCCCccccccC
Confidence            3211                12222223333444999999999999999996   9999999999999999999999999


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCCh----HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETD----SETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~----~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      |..||||               |+||++|+|+.|+.||.....    +++-+++......++    ..+|++++++.+.+
T Consensus       349 T~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~----~kFS~eakslc~~L  424 (591)
T KOG0986|consen  349 TVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYS----DKFSEEAKSLCEGL  424 (591)
T ss_pred             cccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcc----cccCHHHHHHHHHH
Confidence            9999999               999999999999999976433    344455555544444    47999999999999


Q ss_pred             cccCCCCCC-----CHHHHhcCccccCCccccccc
Q psy6046         205 LIKNPMERM-----TAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       205 L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~~~  234 (379)
                      |..||.+|.     +++++.+||||+..+|.....
T Consensus       425 L~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rlea  459 (591)
T KOG0986|consen  425 LTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEA  459 (591)
T ss_pred             HccCHHHhccCCCcCcchhhhCcccccCCHhHHhc
Confidence            999999998     578999999999988775543

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.1e-34  Score=286.77  Aligned_cols=209  Identities=24%  Similarity=0.210  Sum_probs=172.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecC-----------cc
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----------EP   70 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----------~~   70 (379)
                      ..++||+|+||.||+|++..+|+.||+ |....     .....+.+|+.++..++|+||+++++.+.           .+
T Consensus        36 i~~~LG~G~fG~Vy~a~~~~~g~~vAv-K~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i  114 (496)
T PTZ00283         36 ISRVLGSGATGTVLCAKRVSDGEPFAV-KVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMI  114 (496)
T ss_pred             EEEEEecCCCEEEEEEEEcCCCCEEEE-EEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEE
Confidence            345899999999999999999999884 54432     22346789999999999999999876542           15


Q ss_pred             eEEeeC--CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          71 LLGLNP--RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        71 ~~v~e~--~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                      ++++||  +|+|.+.                        .|+.|||+      .||+||||||+|||++.+   +.+||+
T Consensus       115 ~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~------~~IiHrDLKP~NILl~~~---~~vkL~  185 (496)
T PTZ00283        115 ALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS------KHMIHRDIKSANILLCSN---GLVKLG  185 (496)
T ss_pred             EEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEEeCC---CCEEEE
Confidence            789999  6777543                        46677777      999999999999999985   899999


Q ss_pred             ecccceeeccC---ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC
Q psy6046         125 DFEISRVILDG---IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP  186 (379)
Q Consensus       125 DFG~a~~~~~~---~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~  186 (379)
                      |||+++.....   ......+||+.|+||               |+||++|+|++|+.||.+.+..+.+..+..+.... 
T Consensus       186 DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~-  264 (496)
T PTZ00283        186 DFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDP-  264 (496)
T ss_pred             ecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCC-
Confidence            99999875432   223457899999999               99999999999999999998888888877765432 


Q ss_pred             cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       187 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        ....+++++.+++.+||..||.+||++.++++|||++...
T Consensus       265 --~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~~  304 (496)
T PTZ00283        265 --LPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLFI  304 (496)
T ss_pred             --CCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHhh
Confidence              2246899999999999999999999999999999987654

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.7e-34  Score=274.18  Aligned_cols=210  Identities=20%  Similarity=0.279  Sum_probs=173.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCC-CCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKV-EPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~h-pnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+||+|+||.||+|+++.+|+.||+ |+...      .....+..|..+++.+.| |+|+++++++.+   +|++|||  
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~   84 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAI-KILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVN   84 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCC
Confidence            4899999999999999999999885 44332      223457789999998875 667778777654   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++..... 
T Consensus        85 ~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~------~~ivHrDikp~Nill~~~---~~ikL~Dfg~~~~~~~~~  155 (323)
T cd05615          85 GGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHR------RGIIYRDLKLDNVMLDSE---GHIKIADFGMCKEHMVDG  155 (323)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHeEECCC---CCEEEeccccccccCCCC
Confidence            6777655                    56777777      999999999999999985   89999999998764322 


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......+||+.|+||               |+||++|+|++|.+||.+.+.......+......+|.    .+++++.++
T Consensus       156 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~l  231 (323)
T cd05615         156 VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPK----SLSKEAVSI  231 (323)
T ss_pred             ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc----cCCHHHHHH
Confidence            233456799999999               9999999999999999999888888888887776654    579999999


Q ss_pred             HHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         201 IAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       201 i~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      +.+||..+|.+|++     .+++++||||....+...
T Consensus       232 i~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~~~~~~  268 (323)
T cd05615         232 CKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKL  268 (323)
T ss_pred             HHHHcccCHhhCCCCCCCCHHHHhcCcccCCCCHHHH
Confidence            99999999999997     579999999998775543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0983|consensus

Probab=100.00  E-value=4.3e-35  Score=257.00  Aligned_cols=211  Identities=19%  Similarity=0.261  Sum_probs=172.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-----
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-----   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-----   76 (379)
                      .||+|+.|.|++++.+.+|...|+ |.+..    .+..++++.++++..-. .|+||+.|+++..   .++.||+     
T Consensus        99 dlGsGtcG~V~k~~~rs~~~iiAV-K~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~C~  177 (391)
T KOG0983|consen   99 DLGSGTCGQVWKMRFRSTGHIIAV-KQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMSTCA  177 (391)
T ss_pred             hhcCCCccceEEEEEcccceEEEE-EeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHHHH
Confidence            699999999999999999998884 44332    44566888888776665 8999999998653   6777887     


Q ss_pred             -------CchhhHH----------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          77 -------RPPVYQA----------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        77 -------~g~l~~~----------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                             .+.+-+.          .|+.||..     ++||+|||+||+|||++..   |.+||||||++..+.+.....
T Consensus       178 ekLlkrik~piPE~ilGk~tva~v~AL~YLKe-----KH~viHRDvKPSNILlDe~---GniKlCDFGIsGrlvdSkAht  249 (391)
T KOG0983|consen  178 EKLLKRIKGPIPERILGKMTVAIVKALYYLKE-----KHGVIHRDVKPSNILLDER---GNIKLCDFGISGRLVDSKAHT  249 (391)
T ss_pred             HHHHHHhcCCchHHhhhhhHHHHHHHHHHHHH-----hcceeecccCccceEEccC---CCEEeecccccceeecccccc
Confidence                   1111111          78999987     5999999999999999997   999999999999887776667


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCC-ChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...|-+.||||                  |||++++||.||+.||.+. +..+.+.++.+...+..+. -..+|+++.+|
T Consensus       250 rsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~-~~gFSp~F~~f  328 (391)
T KOG0983|consen  250 RSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPG-HMGFSPDFQSF  328 (391)
T ss_pred             cccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCc-ccCcCHHHHHH
Confidence            77899999999                  9999999999999999874 5668888887754322221 13589999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      +..||.+|+.+||...++|+|||+......
T Consensus       329 v~~CL~kd~r~RP~Y~~Ll~h~Fi~~ye~a  358 (391)
T KOG0983|consen  329 VKDCLTKDHRKRPKYNKLLEHPFIKRYETA  358 (391)
T ss_pred             HHHHhhcCcccCcchHHHhcCcceeecchh
Confidence            999999999999999999999999876643

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.6e-34  Score=269.35  Aligned_cols=210  Identities=20%  Similarity=0.288  Sum_probs=165.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+||+|+||.||+|.+..+++.+|+++....     .....+.+|+.+++.++||+|+.+++.+.+   +|+++||  +|
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~   85 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGG   85 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCC
Confidence            4799999999999999999999885443321     112347789999999999999999887654   8999999  56


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|...                      .|+.|||+      .||+||||||+||+++..   +.++|+|||++.......
T Consensus        86 ~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~iiH~dikp~Nil~~~~---~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05630          86 DLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ------ERIVYRDLKPENILLDDH---GHIRISDLGLAVHVPEGQ  156 (285)
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCEEeCCCCHHHEEECCC---CCEEEeeccceeecCCCc
Confidence            66433                      55667776      999999999999999975   789999999997765544


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH---HHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS---ETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ......|++.|+||               |+||++|+|++|+.||.+....   +....+...   .+......+++++.
T Consensus       157 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  233 (285)
T cd05630         157 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE---VQEEYSEKFSPDAR  233 (285)
T ss_pred             cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh---hhhhcCccCCHHHH
Confidence            44556799999999               9999999999999999865432   222222111   11122346899999


Q ss_pred             HHHHHhcccCCCCCCC-----HHHHhcCccccCCccc
Q psy6046         199 DFIAKILIKNPMERMT-----AKEALKHPWLMNKKQI  230 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~  230 (379)
                      +|+.+||..||.+|||     ++|+++||||.+..+.
T Consensus       234 ~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~~  270 (285)
T cd05630         234 SLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFK  270 (285)
T ss_pred             HHHHHHhhcCHHHccCCCCCchHHHHcChhhhccCHH
Confidence            9999999999999999     9999999999876544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=9.2e-35  Score=289.43  Aligned_cols=211  Identities=16%  Similarity=0.166  Sum_probs=156.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCC------cceeeeecCc----ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEP------IEKYYSLDPE----PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~----~~~v~e~-   76 (379)
                      +||+|+||+||+|.+..+++.||+ |+...  ........|+.+++.++|++      ++++++++..    +|+++++ 
T Consensus       136 ~lG~G~fg~V~~a~~~~~~~~vAv-K~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~  214 (467)
T PTZ00284        136 LLGEGTFGKVVEAWDRKRKEYCAV-KIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY  214 (467)
T ss_pred             EEEeccCEEEEEEEEcCCCeEEEE-EEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc
Confidence            799999999999999999988884 54432  22334667888888877654      7777776542    7899988 


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-------------CCcEEE
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-------------NCDIKV  123 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-------------~~~ikl  123 (379)
                      ++.++..                    .|+.|||.     +.||+||||||+|||++.++.             .+.+||
T Consensus       215 g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~-----~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl  289 (467)
T PTZ00284        215 GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHT-----ELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRI  289 (467)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh-----cCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEE
Confidence            6666554                    45666664     149999999999999987521             125999


Q ss_pred             eecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         124 CDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       124 ~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      +|||.+....  ......+||+.|+||               |+||++|+|++|++||.+.+..+.+..+......+|..
T Consensus       290 ~DfG~~~~~~--~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~  367 (467)
T PTZ00284        290 CDLGGCCDER--HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSE  367 (467)
T ss_pred             CCCCccccCc--cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHH
Confidence            9999886432  233457899999999               99999999999999999877766655544322222111


Q ss_pred             cc--------------------------------------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         189 LF--------------------------------------EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       189 ~~--------------------------------------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..                                      ...++.+.|||.+||.+||++|||++|+|+||||....
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~  445 (467)
T PTZ00284        368 WAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYY  445 (467)
T ss_pred             HHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccC
Confidence            00                                      00145678999999999999999999999999998754

>KOG0579|consensus

Probab=100.00  E-value=2.5e-35  Score=282.97  Aligned_cols=229  Identities=23%  Similarity=0.219  Sum_probs=186.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeec---CcceEEeeC--CchhhH
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLD---PEPLLGLNP--RPPVYQ   82 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~---~~~~~v~e~--~g~l~~   82 (379)
                      ||-|+||.||+|.++.|+- +|+-|.+..   .+.+.++-||+||..+.||+||++++.+   ..+|+..||  ||.+-.
T Consensus        40 LGDGAFGKVyKA~nket~~-lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDa  118 (1187)
T KOG0579|consen   40 LGDGAFGKVYKAVNKETKL-LAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDA  118 (1187)
T ss_pred             hcCccchhhhhhhcccchh-hhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhH
Confidence            7889999999999998874 444566655   3456788999999999999999987753   238999999  554443


Q ss_pred             H---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccccc
Q psy6046          83 A---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRE  140 (379)
Q Consensus        83 ~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~~~  140 (379)
                      .                     .|+.|||+      ++|||||||..|||++-+   |.++|+|||.+...... ..-.+
T Consensus       119 imlEL~r~LtE~QIqvvc~q~ldALn~LHs------~~iIHRDLKAGNiL~Tld---GdirLADFGVSAKn~~t~qkRDs  189 (1187)
T KOG0579|consen  119 IMLELGRVLTEDQIQVVCYQVLDALNWLHS------QNIIHRDLKAGNILLTLD---GDIRLADFGVSAKNKSTRQKRDS  189 (1187)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHHHhh------cchhhhhccccceEEEec---CcEeeecccccccchhHHhhhcc
Confidence            3                     56777777      999999999999999997   99999999998765432 24567


Q ss_pred             cccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         141 LLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       141 ~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ++|||+||||                    |||+++.+|..+.+|...-++..++-+|.+...+.. -.+..++..+.||
T Consensus       190 FIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTL-lqPS~Ws~~F~Df  268 (1187)
T KOG0579|consen  190 FIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTL-LQPSHWSRSFSDF  268 (1187)
T ss_pred             ccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcc-cCcchhhhHHHHH
Confidence            8999999999                    999999999999999999998888888877543321 1234789999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCcccccccCCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHh
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS  269 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  269 (379)
                      +.+||..||..||++.++|+||||.+..                   +++.++..+...+....+++..
T Consensus       269 Lk~cL~Knp~~Rp~aaqll~Hpfv~~~~-------------------SnK~ireLlAEakAeV~EEveD  318 (1187)
T KOG0579|consen  269 LKRCLVKNPRNRPPAAQLLKHPFVQNAP-------------------SNKMIRELLAEAKAEVQEEVED  318 (1187)
T ss_pred             HHHHHhcCCccCCCHHHHhhCcccccCC-------------------cchHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999997654                   3366777777788877777763

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-33  Score=269.72  Aligned_cols=214  Identities=22%  Similarity=0.270  Sum_probs=171.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ....||+|+||.||+|++..+++.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|+++|| 
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKNTGQVYAM-KILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYY   83 (331)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEE-EEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecC
Confidence            345899999999999999999998884 55432      223457889999999999999999988765   8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|...                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.....
T Consensus        84 ~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nill~~~---~~~kl~Dfg~~~~~~~  154 (331)
T cd05597          84 VGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ------LGYVHRDIKPDNVLLDKN---GHIRLADFGSCLRLLA  154 (331)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEECCCCHHHEEECCC---CCEEEEECCceeecCC
Confidence             6776654                     56777777      999999999999999875   8999999999976644


Q ss_pred             Ccc--ccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccc
Q psy6046         135 GIE--IRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELF  190 (379)
Q Consensus       135 ~~~--~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~  190 (379)
                      ...  ....+||+.|+||                    |+||++|+|++|+.||.+.+..+....+....  ..++. ..
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~-~~  233 (331)
T cd05597         155 DGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPP-DV  233 (331)
T ss_pred             CCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCC-cc
Confidence            322  2235699999999                    89999999999999999988877777776543  33332 23


Q ss_pred             cCCCHHHHHHHHHhcccCCCC--CCCHHHHhcCccccCCcccc
Q psy6046         191 EDISPEAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      ..+|+.+++||.+||..++.+  |+++.++++||||.+..+..
T Consensus       234 ~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~~~~~  276 (331)
T cd05597         234 TDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGIDWDN  276 (331)
T ss_pred             CCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCCCHHH
Confidence            458999999999999765444  78999999999998876544

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=6.7e-34  Score=271.02  Aligned_cols=214  Identities=21%  Similarity=0.270  Sum_probs=172.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|+++.+++.+| +|....      .....+..|+.++..++||+|+++++.+.+   +|++||| 
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~   83 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKNADKVFA-MKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYY   83 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEE-EEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEecc
Confidence            34589999999999999999998888 454432      223347889999999999999999988765   8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.....
T Consensus        84 ~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~------~~iiHrDlkp~Nili~~~---~~~kL~DfG~a~~~~~  154 (332)
T cd05623          84 VGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ------LHYVHRDIKPDNILMDMN---GHIRLADFGSCLKLME  154 (332)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCHHHEEECCC---CCEEEeecchheeccc
Confidence             6777655                     56777777      999999999999999875   8999999999976543


Q ss_pred             Ccc--ccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC--CCcccc
Q psy6046         135 GIE--IRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD--FPDELF  190 (379)
Q Consensus       135 ~~~--~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~  190 (379)
                      ...  ....+||+.|+||                    |+||++|+|++|+.||.+.+..+.+..+......  +|. ..
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~-~~  233 (332)
T cd05623         155 DGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPA-QV  233 (332)
T ss_pred             CCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCC-cc
Confidence            322  2345799999999                    8999999999999999998888888888765432  232 23


Q ss_pred             cCCCHHHHHHHHHhcccCCCC--CCCHHHHhcCccccCCcccc
Q psy6046         191 EDISPEAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      ..+++++++||.+||..+|.+  |++++++++||||.+..+..
T Consensus       234 ~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~~~~~  276 (332)
T cd05623         234 TDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGIDWDN  276 (332)
T ss_pred             ccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCCCHHH
Confidence            468999999999999765554  68999999999999876544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=7.2e-34  Score=264.89  Aligned_cols=212  Identities=20%  Similarity=0.279  Sum_probs=167.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||+||+|.+..+|+.+|+ |....      .....+.+|+.+|+.++||+|+.+++.+.+   .|+++||  +
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYAC-KRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEE-EEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccC
Confidence            4799999999999999999998885 44332      112347889999999999999999877554   7899998  5


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |.+...                      .|+.|||+      .||+||||||+||++++.   +.++|+|||++......
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~------~~iiH~dikp~Nili~~~---~~~kl~Dfg~~~~~~~~  155 (285)
T cd05632          85 GDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHR------ENTVYRDLKPENILLDDY---GHIRISDLGLAVKIPEG  155 (285)
T ss_pred             ccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecCCCHHHEEECCC---CCEEEecCCcceecCCC
Confidence            554322                      56777777      999999999999999875   78999999999776544


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      .......|++.|+||               |+||++|+|++|..||.+.........+..............+++++.+|
T Consensus       156 ~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (285)
T cd05632         156 ESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSI  235 (285)
T ss_pred             CcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHH
Confidence            444556799999999               99999999999999998876554433333322222222334689999999


Q ss_pred             HHHhcccCCCCCCC-----HHHHhcCccccCCccc
Q psy6046         201 IAKILIKNPMERMT-----AKEALKHPWLMNKKQI  230 (379)
Q Consensus       201 i~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~  230 (379)
                      +.+||..||++||+     +.+++.||||+...+.
T Consensus       236 i~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~  270 (285)
T cd05632         236 CKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFK  270 (285)
T ss_pred             HHHHccCCHhHcCCCcccChHHHHcChhhhcCCHH
Confidence            99999999999999     8899999999887644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0574|consensus

Probab=100.00  E-value=1.5e-36  Score=269.29  Aligned_cols=207  Identities=21%  Similarity=0.260  Sum_probs=175.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC---cceEEeeC--CchhhHH-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP---EPLLGLNP--RPPVYQA-   83 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~---~~~~v~e~--~g~l~~~-   83 (379)
                      -||+|+||.||+|.|+.+|..+|++++.-..+.+.+.+|+.||+++..|++|+||+.+.   ++|+||||  .|++.+. 
T Consensus        40 KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~  119 (502)
T KOG0574|consen   40 KLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIM  119 (502)
T ss_pred             HhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHH
Confidence            58999999999999999999999888777788899999999999999999999999743   59999999  5665555 


Q ss_pred             --------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccc
Q psy6046          84 --------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELL  142 (379)
Q Consensus        84 --------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~  142 (379)
                                          .+++|||.      ..-+|||||..|||++.+   |..||+|||.|..+.+.- ..++.+
T Consensus       120 R~R~K~L~E~EIs~iL~~TLKGL~YLH~------~~KIHRDIKAGNILLNT~---G~AKLADFGVAGQLTDTMAKRNTVI  190 (502)
T KOG0574|consen  120 RARRKPLSEQEISAVLRDTLKGLQYLHD------LKKIHRDIKAGNILLNTD---GIAKLADFGVAGQLTDTMAKRNTVI  190 (502)
T ss_pred             HHhcCCccHHHHHHHHHHHHhHHHHHHH------HHHHHhhcccccEEEccc---chhhhhhccccchhhhhHHhhCccc
Confidence                                68999999      888999999999999987   999999999999886654 345678


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc--ccCCCHHHHHHHHHhc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKIL  205 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~--~~~~s~~~~~li~~~L  205 (379)
                      |||.||||               |||++..||..|++||.+-.+...+-.|-.   ..|+.+  +..+|.++.||+++||
T Consensus       191 GTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT---~PPPTF~KPE~WS~~F~DFi~~CL  267 (502)
T KOG0574|consen  191 GTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPT---KPPPTFKKPEEWSSEFNDFIRSCL  267 (502)
T ss_pred             cCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccC---CCCCCCCChHhhhhHHHHHHHHHh
Confidence            99999999               999999999999999987655432222221   212211  1357999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccCCc
Q psy6046         206 IKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ...|++|-|+-++++|||+++..
T Consensus       268 iK~PE~R~TA~~L~~H~FiknA~  290 (502)
T KOG0574|consen  268 IKKPEERKTALRLCEHTFIKNAP  290 (502)
T ss_pred             cCCHHHHHHHHHHhhhhhhcCCC
Confidence            99999999999999999998765

>KOG0584|consensus

Probab=100.00  E-value=7.9e-35  Score=280.79  Aligned_cols=210  Identities=20%  Similarity=0.288  Sum_probs=177.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEE--EEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQ--WKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~--~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      ++||+|+|-+||+|.|..+|.+||-  +|..+.    .+.+++..|+.+|+.|+||||+++|+.+.+     +-+++|+ 
T Consensus        46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~  125 (632)
T KOG0584|consen   46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF  125 (632)
T ss_pred             hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc
Confidence            4999999999999999999999882  333222    345789999999999999999999998776     6688999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       .|+|..+                    .+|.|||+    |.--|+|||||++||+++..  .|.|||+|+|+|+.....
T Consensus       126 TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs----~~PPIIHRDLKCDNIFinG~--~G~VKIGDLGLAtl~r~s  199 (632)
T KOG0584|consen  126 TSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHS----QDPPIIHRDLKCDNIFVNGN--LGEVKIGDLGLATLLRKS  199 (632)
T ss_pred             cCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhc----CCCCccccccccceEEEcCC--cCceeecchhHHHHhhcc
Confidence             8999988                    56677776    44569999999999999975  699999999999876444


Q ss_pred             ccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....+|||.||||              |+|.++.||+|+..||.. .++.++++++..|..+  ..+..--.+++++|
T Consensus       200 -~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP--~sl~kV~dPevr~f  276 (632)
T KOG0584|consen  200 -HAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKP--AALSKVKDPEVREF  276 (632)
T ss_pred             -ccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCH--HHhhccCCHHHHHH
Confidence             45558999999999              999999999999999975 6778899999888643  33333347999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||.. .+.|||+.|+|.||||....
T Consensus       277 IekCl~~-~~~R~sa~eLL~d~Ff~~d~  303 (632)
T KOG0584|consen  277 IEKCLAT-KSERLSAKELLKDPFFDEDG  303 (632)
T ss_pred             HHHHhcC-chhccCHHHHhhChhhcccc
Confidence            9999999 99999999999999998763

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.6e-34  Score=274.88  Aligned_cols=205  Identities=14%  Similarity=0.105  Sum_probs=154.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-CchhhHH-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPVYQA-   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l~~~-   83 (379)
                      ..||+|+||.||+|++..+++.|| +|....   .....|+.+++.++||||+++++++.+   .|+++|+ .|.++.. 
T Consensus        72 ~~lg~G~~g~Vy~~~~~~~~~~va-lK~~~~---~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l  147 (357)
T PHA03209         72 KTLTPGSEGRVFVATKPGQPDPVV-LKIGQK---GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYL  147 (357)
T ss_pred             EEecCCCCeEEEEEEECCCCceEE-EEeCCc---cccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccCCcHHHHH
Confidence            489999999999999999988887 555332   334679999999999999999988654   7889998 5555554 


Q ss_pred             --------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          84 --------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        84 --------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                                          .|+.|||.      +||+||||||+|||++..   +.+||+|||+++............|
T Consensus       148 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~Nill~~~---~~~kl~DfG~a~~~~~~~~~~~~~g  218 (357)
T PHA03209        148 TKRSRPLPIDQALIIEKQILEGLRYLHA------QRIIHRDVKTENIFINDV---DQVCIGDLGAAQFPVVAPAFLGLAG  218 (357)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEEecCccccccccCcccccccc
Confidence                                56777777      999999999999999885   8899999999975443333445679


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCC-CCCCh---------HHHHHHHHhC----CCCCCc-------
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPF-GGETD---------SETFRNISKA----QLDFPD-------  187 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf-~~~~~---------~~~~~~i~~~----~~~~~~-------  187 (379)
                      |+.|+||               |+||++|+|+++..|+ .....         ...+..+...    +..++.       
T Consensus       219 t~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  298 (357)
T PHA03209        219 TVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLV  298 (357)
T ss_pred             cccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHH
Confidence            9999999               9999999999865544 32111         0111111110    111110       


Q ss_pred             -------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         188 -------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       188 -------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                                         .....++.++.+||.+||..||++|||+.|+|+||||++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        299 RGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence                               001246778889999999999999999999999999975

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.6e-33  Score=261.74  Aligned_cols=208  Identities=21%  Similarity=0.190  Sum_probs=160.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      .+.||+|+||.||+|.+..+|..||+++....    .....+.+|+.+++.++||||+++++++.+   +|+++|| .|.
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLSMD   84 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCCCC
Confidence            45799999999999999999998885443222    123468899999999999999999998764   8999999 443


Q ss_pred             hhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          80 VYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        80 l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +.+.                       .|+.|||+      +||+||||||+||+++.+   +.++|+|||++.......
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~~~~~  155 (285)
T cd07861          85 LKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS------RRVLHRDLKPQNLLIDNK---GVIKLADFGLARAFGIPV  155 (285)
T ss_pred             HHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh------CCeeecCCCHHHEEEcCC---CcEEECcccceeecCCCc
Confidence            3322                       56777777      999999999999999875   899999999997653221


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC---------------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD---------------  184 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~---------------  184 (379)
                       ......+++.|+||                |+||++|+|++|++||.+.+..+....+......               
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (285)
T cd07861         156 RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDY  235 (285)
T ss_pred             ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHH
Confidence             22334578889999                9999999999999999877654433322111000               


Q ss_pred             ----------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 ----------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ----------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                ........+++++.+||.+||..||++|||+.++++||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         236 KNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             HhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence                      0011223578999999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.1e-33  Score=269.43  Aligned_cols=215  Identities=22%  Similarity=0.253  Sum_probs=172.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ....||+|+||.||+|++..+++.|| +|....      .....+.+|+.+++.++||+|+++++.+.+   .|++||| 
T Consensus         5 i~~~lG~G~fg~V~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~   83 (331)
T cd05624           5 IIKVIGRGAFGEVAVVKMKHTERIYA-MKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYY   83 (331)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEE-EEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCC
Confidence            34589999999999999999998888 454432      223447889999999999999999988664   8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|...                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.....
T Consensus        84 ~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~------~~iiHrDlkp~Nill~~~---~~~kl~DfG~a~~~~~  154 (331)
T cd05624          84 VGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQ------LHYVHRDIKPDNVLLDMN---GHIRLADFGSCLKMNQ  154 (331)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCchHHEEEcCC---CCEEEEeccceeeccC
Confidence             6777655                     45666676      999999999999999875   8899999999987644


Q ss_pred             Ccc--ccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC--CCCcccc
Q psy6046         135 GIE--IRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL--DFPDELF  190 (379)
Q Consensus       135 ~~~--~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~  190 (379)
                      ...  ....+||+.|+||                    |+||++|+|++|+.||.+.+..+....+.....  .+|. .+
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~-~~  233 (331)
T cd05624         155 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPS-HI  233 (331)
T ss_pred             CCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCC-cc
Confidence            322  2235799999999                    899999999999999999888888877766443  2332 23


Q ss_pred             cCCCHHHHHHHHHhcccCCCC--CCCHHHHhcCccccCCccccc
Q psy6046         191 EDISPEAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      ..++++++++|.+||..++++  |++++++++||||....|...
T Consensus       234 ~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~~~~~~  277 (331)
T cd05624         234 TDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGIDWENI  277 (331)
T ss_pred             ccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCCCHHHH
Confidence            467999999999999876654  468999999999998766543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.4e-33  Score=269.06  Aligned_cols=209  Identities=20%  Similarity=0.239  Sum_probs=162.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|+||.||+|.+..+|..+| +|.....    ....+.+|+++++.++||||+++++++.+   +|+++||  +|
T Consensus        10 ~~~lg~g~~g~V~~~~~~~~~~~~a-~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   88 (333)
T cd06650          10 ISELGAGNGGVVFKVSHKPSGLIMA-RKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   88 (333)
T ss_pred             eccccCCCCEEEEEEEECCCCcEEE-EEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCC
Confidence            4589999999999999999998877 4544332    23568899999999999999999988664   8999999  67


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +|.+.                    .|+.|||+     ..+|+||||||+|||++.+   +.+||+|||++...... ..
T Consensus        89 ~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~-----~~~ivH~dlkp~Nili~~~---~~~kL~Dfg~~~~~~~~-~~  159 (333)
T cd06650          89 SLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE-----KHKIMHRDVKPSNILVNSR---GEIKLCDFGVSGQLIDS-MA  159 (333)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh-----cCCEEecCCChhhEEEcCC---CCEEEeeCCcchhhhhh-cc
Confidence            77665                    45677775     1479999999999999875   78999999998765332 23


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHH-------------------------
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNI-------------------------  178 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i-------------------------  178 (379)
                      ....||+.|+||               |+||++|+|++|+.||......+....+                         
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (333)
T cd06650         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLS  239 (333)
T ss_pred             ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhh
Confidence            456789999999               9999999999999999765543332111                         


Q ss_pred             -------------------HhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         179 -------------------SKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       179 -------------------~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                         .....  +......+++++++||.+||..||++|||+.|++.||||+...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         240 SYGPDSRPPMAIFELLDYIVNEPP--PKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             hhcccccccccHHHHHHHHhcCCC--ccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCc
Confidence                               00000  0000113678999999999999999999999999999997543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0662|consensus

Probab=100.00  E-value=3.6e-34  Score=237.19  Aligned_cols=217  Identities=19%  Similarity=0.198  Sum_probs=172.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-----
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-----   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-----   76 (379)
                      +-||+|+||+||+|+++.|++.||.+.+.-..+    -...++|+-+|+.|.|.|||+++++...   +.+++|+     
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdqdl   87 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDL   87 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhHHH
Confidence            479999999999999999999998644432222    2468999999999999999999998654   7888888     


Q ss_pred             -------CchhhHH----HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccccC
Q psy6046          77 -------RPPVYQA----SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELLGT  144 (379)
Q Consensus        77 -------~g~l~~~----~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~gt  144 (379)
                             .|.+-..    --++.|..+-+||++++.||||||+|+|++.   ||.+|++|||+++.+.-.- .....+-|
T Consensus        88 kkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~---ngelkladfglarafgipvrcysaevvt  164 (292)
T KOG0662|consen   88 KKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINR---NGELKLADFGLARAFGIPVRCYSAEVVT  164 (292)
T ss_pred             HHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEecc---CCcEEecccchhhhcCCceEeeeceeee
Confidence                   3444333    2356667777799999999999999999998   4999999999998764332 23445678


Q ss_pred             CCCcch----------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCc--------------------
Q psy6046         145 PDYVGK----------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPD--------------------  187 (379)
Q Consensus       145 ~~y~aP----------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~--------------------  187 (379)
                      .+|.+|                |.|||+.|+.. |++.|+|.+..+++.+|...-....+                    
T Consensus       165 lwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypa  244 (292)
T KOG0662|consen  165 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPA  244 (292)
T ss_pred             eeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccc
Confidence            899999                99999999985 89999999999998888553211111                    


Q ss_pred             -----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 -----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 -----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                           .+.+.++...+||++++|.-+|.+|++++++|+||||.+..
T Consensus       245 ttswsqivp~lns~grdllqkll~cnp~qrisaeaalqhpyf~d~s  290 (292)
T KOG0662|consen  245 TTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDFS  290 (292)
T ss_pred             cchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcCccccccC
Confidence                 12234566789999999999999999999999999998654

>KOG0669|consensus

Probab=100.00  E-value=4.9e-35  Score=253.95  Aligned_cols=210  Identities=18%  Similarity=0.203  Sum_probs=169.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc-----------ceEEe
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLLGL   74 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~v~   74 (379)
                      .||+|.||+||+|+++.+|+.||++|+....+    ....++|+++|..|.|+|++.+++++..           +|+|+
T Consensus        24 kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf  103 (376)
T KOG0669|consen   24 KIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVF  103 (376)
T ss_pred             hcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeH
Confidence            79999999999999999999988766654322    2468999999999999999999887542           68888


Q ss_pred             eC-----CchhhHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP-----RPPVYQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~-----~g~l~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      .+     .|-|...                 .++.|+|.      ..|+|||+||+|+|++.+   +.+||+|||+++.+
T Consensus       104 ~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr------~kilHRDmKaaNvLIt~d---gilklADFGlar~f  174 (376)
T KOG0669|consen  104 DFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHR------NKILHRDMKAANVLITKD---GILKLADFGLARAF  174 (376)
T ss_pred             HHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHH------hhHHhhcccHhhEEEcCC---ceEEeeccccccce
Confidence            77     1222111                 67888888      999999999999999987   89999999999876


Q ss_pred             ccCc-----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         133 LDGI-----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       133 ~~~~-----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ....     ..+..+-|.+|.+|                +.|||+.+|+||.+-+.+.+...++..|..-...+.++.|+
T Consensus       175 s~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP  254 (376)
T KOG0669|consen  175 STSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWP  254 (376)
T ss_pred             ecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCC
Confidence            5322     23445668899998                89999999999999999999998888875543333333333


Q ss_pred             CC-------------------------------CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         192 DI-------------------------------SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       192 ~~-------------------------------s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++                               ++++.||+.++|..||.+|++++++++|.||....
T Consensus       255 ~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp  322 (376)
T KOG0669|consen  255 NVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDP  322 (376)
T ss_pred             CcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCC
Confidence            22                               45889999999999999999999999999996543

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-33  Score=255.75  Aligned_cols=206  Identities=21%  Similarity=0.259  Sum_probs=164.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      .+.+||+|+||.||+|.+..+|+.+|+ |....        .....+.+|+.+++.++||||+++++++.+   +|+++|
T Consensus         6 ~~~~lg~g~~~~vy~~~~~~~~~~~~l-k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   84 (263)
T cd06625           6 RGKLLGQGAFGRVYLCYDVDTGRELAV-KQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFME   84 (263)
T ss_pred             ccceecCCCceEEEEEEEcCCCcEEEE-EEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEE
Confidence            346999999999999999999998885 43321        123458889999999999999999998765   899999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +  ++.+.+.                    .|+.|||+      .||+||||+|+||+++.+   +.++|+|||+++...
T Consensus        85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~H~dl~p~nilv~~~---~~~~l~dfg~~~~~~  155 (263)
T cd06625          85 YMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHS------NMIVHRDIKGANILRDSA---GNVKLGDFGASKRLQ  155 (263)
T ss_pred             ECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEeecccceecc
Confidence            9  5666544                    45666666      999999999999999875   899999999997653


Q ss_pred             cCcc----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         134 DGIE----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       134 ~~~~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ....    .....|++.|+||               |+|+++|+|++|+.||.+.+.......+......  ......++
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~  233 (263)
T cd06625         156 TICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN--PQLPSHVS  233 (263)
T ss_pred             ccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCC--CCCCccCC
Confidence            3211    1345678899999               9999999999999999887666555555443222  22334689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..+.++|.+||..+|.+|||+.++++||||
T Consensus       234 ~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         234 PDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence            999999999999999999999999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=3.2e-33  Score=256.74  Aligned_cols=205  Identities=28%  Similarity=0.403  Sum_probs=168.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ||.|+||.||+|++..+++.+|+ |....      .....+.+|+.+++.++||||+++++.+.+   +|+++||  +|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~i-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFAL-KCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEE-EEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            79999999999999999988884 44322      223568999999999999999999988654   8999999  667


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |.+.                    .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++..........
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~------~~~~h~dl~~~nilv~~~---~~~~l~df~~~~~~~~~~~~~  150 (262)
T cd05572          80 LWTILRDRGLFDEYTARFYIACVVLAFEYLHN------RGIIYRDLKPENLLLDSN---GYVKLVDFGFAKKLKSGQKTW  150 (262)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh------CCcccCCCCHHHEEEcCC---CCEEEeeCCcccccCcccccc
Confidence            7655                    45666666      999999999999999886   899999999998775543334


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC--hHHHHHHHHh--CCCCCCcccccCCCHHHHHH
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET--DSETFRNISK--AQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~--~~~~~~~i~~--~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...|++.|+||               |+|+++|+|++|..||....  ..+....+..  ....+|.    ..++++.++
T Consensus       151 ~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  226 (262)
T cd05572         151 TFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPN----YIDKAAKDL  226 (262)
T ss_pred             cccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCc----ccCHHHHHH
Confidence            45788899999               99999999999999998766  6666666663  3333333    358999999


Q ss_pred             HHHhcccCCCCCCC-----HHHHhcCccccCCcc
Q psy6046         201 IAKILIKNPMERMT-----AKEALKHPWLMNKKQ  229 (379)
Q Consensus       201 i~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~  229 (379)
                      |.+||..+|.+||+     +.|+++||||.+..|
T Consensus       227 i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~  260 (262)
T cd05572         227 IKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDW  260 (262)
T ss_pred             HHHHccCChhhCcCCcccCHHHHhcChhhhCCCC
Confidence            99999999999999     999999999987765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=3.3e-33  Score=263.26  Aligned_cols=211  Identities=18%  Similarity=0.153  Sum_probs=164.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--c--chHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--Q--GVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~--~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-~g   78 (379)
                      ..||+|+||.||+|.+..+|+.||+++.....  .  ...+.+|+.+++.++||||+++++++.+     +++++|| .+
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~   92 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ   92 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCCC
Confidence            48999999999999999999998854432221  1  2346789999999999999999988632     7899999 44


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      .+...                     .|+.|||+      .|++||||||+||+++.+   +.+||+|||++....... 
T Consensus        93 ~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~nil~~~~---~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845          93 DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHE------NFIIHRDLKVSNLLLTDK---GCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CCEEECccceeeecCCccC
Confidence            33222                     56777777      999999999999999985   899999999998764332 


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC----------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD----------------  184 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~----------------  184 (379)
                      ......+++.|+||                |+||++|+|++|.+||.+.+..+.+..+......                
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVG  243 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccc
Confidence            22334457789998                9999999999999999998887777766542111                


Q ss_pred             ---CCcc-------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         185 ---FPDE-------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       185 ---~~~~-------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                         .+..       .....++.+.+||.+||..||++|||+.+++.||||+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~  297 (309)
T cd07845         244 KFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKP  297 (309)
T ss_pred             cccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCC
Confidence               0100       1123589999999999999999999999999999998554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2.8e-33  Score=259.57  Aligned_cols=212  Identities=20%  Similarity=0.292  Sum_probs=165.4

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ||+|+||+||+|.+..+|+.+|+ |....      .....+..|+.+++.++||||+++++.+..   +|+++||  +|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYAC-KKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEE-EEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            79999999999999999998885 44322      223456789999999999999999887654   8999999  455


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |...                      .|+.|||.      .|++||||+|+||+++.+   +.++|+|||++........
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~------~~i~H~di~p~Nil~~~~---~~~~l~dfg~~~~~~~~~~  150 (277)
T cd05577          80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ------RRIVYRDLKPENVLLDDH---GNVRISDLGLAVELKGGKK  150 (277)
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEECCC---CCEEEccCcchhhhccCCc
Confidence            5433                      45666666      999999999999999885   8999999999976654434


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      .....++..|+||               |+|+++|+|++|+.||.+.........+.......+......+++.+.++|.
T Consensus       151 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  230 (277)
T cd05577         151 IKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCE  230 (277)
T ss_pred             cccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHH
Confidence            4455678889999               9999999999999999775542222222222222233333467999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +||..||.+||     ++.+++.||||...++...
T Consensus       231 ~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~~~~~  265 (277)
T cd05577         231 ALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRL  265 (277)
T ss_pred             HHccCChhHccCCCcccHHHHHhChhhhcCChhhh
Confidence            99999999999     8999999999988776544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=4.2e-34  Score=261.70  Aligned_cols=207  Identities=24%  Similarity=0.352  Sum_probs=162.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccc-----hHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQG-----VVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~-----~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+.||+|+||+||+|++..+++.+|+ |.......     ....+|+.+++.++||||++++++..+   .|+++|+  +
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~-K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~   82 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAV-KIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPG   82 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEE-EEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETT
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEE-EEeccccccccccchhhhhhhcccccccccccccccccccccccccccccccc
Confidence            35799999999999999999988884 55444322     224569999999999999999998754   8899999  5


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee-ccCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI-LDGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~-~~~~  136 (379)
                      +++.+.                    .|+.+||+      .||+|+||||+||+++.+   +.++|+|||.+... ....
T Consensus        83 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~------~~i~H~dikp~NIl~~~~---~~~~l~Dfg~~~~~~~~~~  153 (260)
T PF00069_consen   83 GSLQDYLQKNKPLSEEEILKIAYQILEALAYLHS------KGIVHRDIKPENILLDEN---GEVKLIDFGSSVKLSENNE  153 (260)
T ss_dssp             EBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHH------TTEEESSBSGGGEEESTT---SEEEESSGTTTEESTSTTS
T ss_pred             cccccccccccccccccccccccccccccccccc------cccccccccccccccccc---ccccccccccccccccccc
Confidence            577654                    67778888      999999999999999965   89999999999864 2333


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChH---HHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDS---ETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ......+++.|+||                |+|+++|+|++|..||......   .............+.......++.+
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (260)
T PF00069_consen  154 NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEEL  233 (260)
T ss_dssp             EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHH
Confidence            45567789999999                9999999999999999987433   3333333222211111111234899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++|.+||..||++|||+.++++||||
T Consensus       234 ~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  234 RDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             HHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             HHHHHHHccCChhHCcCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.4e-33  Score=260.08  Aligned_cols=210  Identities=23%  Similarity=0.375  Sum_probs=176.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|.+..+++.+|+ |....      .....+.+|+++++.++||||+++++++.+   +|+++|| 
T Consensus         5 ~~~~ig~g~~~~vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (290)
T cd05580           5 FIKTLGTGSFGRVMLVRHKGSGKYYAL-KILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYV   83 (290)
T ss_pred             EEEEeecCCCeEEEEEEEcCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecC
Confidence            346899999999999999999988885 44322      234568899999999999999999998665   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|.+.                    .|+.|||.      .|++||||+|+||+++.+   +.+||+|||++......
T Consensus        84 ~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~------~~i~H~dl~p~nili~~~---~~~kl~dfg~~~~~~~~  154 (290)
T cd05580          84 PGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHS------LDIVYRDLKPENLLLDSD---GYIKITDFGFAKRVKGR  154 (290)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCCHHHEEECCC---CCEEEeeCCCccccCCC
Confidence             6666655                    45666666      999999999999999885   88999999999876443


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                        ....+|++.|+||               |+|+++|+|++|+.||...+..+....+..+...+|.    .+++.++++
T Consensus       155 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l  228 (290)
T cd05580         155 --TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPS----FFSPDAKDL  228 (290)
T ss_pred             --CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCc----cCCHHHHHH
Confidence              3445788999999               9999999999999999988877777777777666554    468999999


Q ss_pred             HHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         201 IAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       201 i~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      |.+||..||.+|+     +++++++||||....|...
T Consensus       229 i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~  265 (290)
T cd05580         229 IRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIAL  265 (290)
T ss_pred             HHHHccCCHHHccCcccCCHHHHHcCcccccCCHHHH
Confidence            9999999999999     9999999999988776554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.2e-33  Score=276.04  Aligned_cols=205  Identities=19%  Similarity=0.187  Sum_probs=156.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-CchhhHH-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPVYQA-   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l~~~-   83 (379)
                      ..||+|+||.||+|.+..+++.||+ |...   ...+.+|+++|+.|+|||||++++++..   .|+++|+ .|.++.. 
T Consensus       175 ~~Lg~G~~G~Vy~a~~~~~~~~vav-K~~~---~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~~~L~~~l  250 (461)
T PHA03211        175 RALTPGSEGCVFESSHPDYPQRVVV-KAGW---YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLYTYL  250 (461)
T ss_pred             EEEccCCCeEEEEEEECCCCCEEEE-eccc---ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccCCCHHHHH
Confidence            3799999999999999999988884 5322   2346789999999999999999987543   7888888 5555544 


Q ss_pred             --------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---cccc
Q psy6046          84 --------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---EIRE  140 (379)
Q Consensus        84 --------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---~~~~  140 (379)
                                          .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......   ....
T Consensus       251 ~~~~~~l~~~~~~~i~~qi~~aL~yLH~------~gIvHrDLKP~NILl~~~---~~vkL~DFGla~~~~~~~~~~~~~~  321 (461)
T PHA03211        251 GARLRPLGLAQVTAVARQLLSAIDYIHG------EGIIHRDIKTENVLVNGP---EDICLGDFGAACFARGSWSTPFHYG  321 (461)
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEEECcCCHHHEEECCC---CCEEEcccCCceecccccccccccc
Confidence                                56677777      999999999999999875   889999999998754322   1224


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhhCCCCCCCC--------ChHHHHHHHHhCCCC---CC--------
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE--------TDSETFRNISKAQLD---FP--------  186 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~--------~~~~~~~~i~~~~~~---~~--------  186 (379)
                      .+||+.|+||               |+||++|+|++|..|+...        ...++...+......   ++        
T Consensus       322 ~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~  401 (461)
T PHA03211        322 IAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLV  401 (461)
T ss_pred             cCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHH
Confidence            5799999999               9999999999988765332        122333333332211   11        


Q ss_pred             ----------------cccc---cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         187 ----------------DELF---EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       187 ----------------~~~~---~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                                      ...|   ..++.++.+||.+||..||.+|||+.|+|+||||+.
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        402 SQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             HHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence                            0111   145678999999999999999999999999999964

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=3e-33  Score=259.98  Aligned_cols=207  Identities=20%  Similarity=0.260  Sum_probs=159.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||+|+||.||+|++..+|+.+|++.....    .....+.+|+.+++.++||||+++++++.+   +|+++|| .|.+
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l   85 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQDL   85 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCCCCH
Confidence            4799999999999999999998885433221    112457889999999999999999988765   8999999 5444


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|+.|||.      +||+||||||+||+++.+   +.+||+|||++....... ..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~------~~i~H~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~  156 (284)
T cd07839          86 KKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHS------HNVLHRDLKPQNLLINKN---GELKLADFGLARAFGIPVRCY  156 (284)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCCHHHEEEcCC---CcEEECccchhhccCCCCCCc
Confidence            443                     56777777      999999999999999975   899999999997653322 23


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCC-CCCChHHHHHHHHhCCCC-----------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPF-GGETDSETFRNISKAQLD-----------------  184 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf-~~~~~~~~~~~i~~~~~~-----------------  184 (379)
                      ....+++.|+||                |+||++|+|++|..|| .+.+..+.+..+......                 
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07839         157 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKP  236 (284)
T ss_pred             CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccc
Confidence            345678889999                9999999999988885 555555544444221100                 


Q ss_pred             CC--------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 FP--------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ~~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++        ....+.+++++++||.+||..||.+|||+++++.||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         237 YPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             cCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            00        01123578999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.7e-33  Score=290.88  Aligned_cols=215  Identities=20%  Similarity=0.202  Sum_probs=165.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~--   76 (379)
                      ..||+|+||.||+|++..++..+| +|....     .....+..|+.+|+.|+|||||++++++.+     +|++|||  
T Consensus        19 ~kLG~GgFGtVYLAkdk~tg~~vA-lKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~   97 (1021)
T PTZ00266         19 KKIGNGRFGEVFLVKHKRTQEFFC-WKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCD   97 (1021)
T ss_pred             EEEecCCCeEEEEEEECCCCeEEE-EEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCC
Confidence            479999999999999999988777 454432     234568899999999999999999997632     7999999  


Q ss_pred             CchhhHH------------------------HHHHHHhcccC-CCCCCeEeCCCCCCcEEEeecC--------------C
Q psy6046          77 RPPVYQA------------------------SATTKAGSVLF-PPLMDFIFFFLQPQNLVMMGDF--------------P  117 (379)
Q Consensus        77 ~g~l~~~------------------------~al~~lh~~~~-~h~~~ivHrDlkp~Nill~~~~--------------~  117 (379)
                      +|+|...                        .||.|||.... .+..+|+||||||+|||++...              .
T Consensus        98 gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng  177 (1021)
T PTZ00266         98 AGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNG  177 (1021)
T ss_pred             CCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCC
Confidence            6666543                        45666665110 0114599999999999997521              1


Q ss_pred             CCcEEEeecccceeeccCccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHH-HHHHHH
Q psy6046         118 NCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSE-TFRNIS  179 (379)
Q Consensus       118 ~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~-~~~~i~  179 (379)
                      ...+||+|||++............+||+.|+||                 ||||++|+|++|..||...+... .+..+.
T Consensus       178 ~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk  257 (1021)
T PTZ00266        178 RPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELK  257 (1021)
T ss_pred             CCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHh
Confidence            245899999999876554445566899999999                 99999999999999997655443 344443


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+ ..++.   ...+.++.+||..||..+|.+|||+.|+|.|||+....
T Consensus       258 ~~-p~lpi---~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i~  302 (1021)
T PTZ00266        258 RG-PDLPI---KGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNVG  302 (1021)
T ss_pred             cC-CCCCc---CCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhcC
Confidence            33 22222   35789999999999999999999999999999997543

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-33  Score=264.87  Aligned_cols=215  Identities=25%  Similarity=0.328  Sum_probs=164.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e~   76 (379)
                      ...||+|+||.||+|++..+|+.||+++....   .....+.+|+.+++.++||||+++++++.        ..|+++|+
T Consensus        10 ~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~   89 (336)
T cd07849          10 LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQEL   89 (336)
T ss_pred             EEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehh
Confidence            45899999999999999999999885443221   22345788999999999999999987643        26899998


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                       .+.+...                   .|+.|||+      .||+||||||+||+++.+   +.+||+|||++.......
T Consensus        90 ~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~------~~ivH~dlkp~Nill~~~---~~~kl~dfg~~~~~~~~~  160 (336)
T cd07849          90 METDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHS------ANVLHRDLKPSNLLLNTN---CDLKICDFGLARIADPEH  160 (336)
T ss_pred             cccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHEEECCC---CCEEECcccceeeccccc
Confidence             5555443                   56777777      999999999999999885   899999999997654322


Q ss_pred             ----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--------------
Q psy6046         137 ----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--------------  182 (379)
Q Consensus       137 ----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--------------  182 (379)
                          .....+||+.|+||                |+||++|+|++|++||.+.+.......+....              
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (336)
T cd07849         161 DHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISL  240 (336)
T ss_pred             cccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhch
Confidence                12345789999999                99999999999999998765443332221100              


Q ss_pred             --------CCC-C----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         183 --------LDF-P----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       183 --------~~~-~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                              .+. +    ....+..++++.+||.+||..+|.+|||+.++++||||.......
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~~  302 (336)
T cd07849         241 RARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDPS  302 (336)
T ss_pred             hhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCCC
Confidence                    000 0    011235688999999999999999999999999999999776443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.4e-32  Score=255.30  Aligned_cols=207  Identities=18%  Similarity=0.239  Sum_probs=162.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ++||+|+||.||+|++..+++.+|+ |....    .....+.+|+.+++.++||||+++++.+..   .++++||  +|.
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   85 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAV-KVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGS   85 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEE-EEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCC
Confidence            4899999999999999999988884 44322    223468899999999999999999987654   7899999  555


Q ss_pred             hhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          80 VYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        80 l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                      +...                .|+.|||+      .||+|+||||+||+++.+   +.++|+|||++...... .....+|
T Consensus        86 l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nill~~~---~~~~l~dfg~~~~~~~~-~~~~~~~  155 (279)
T cd06619          86 LDVYRKIPEHVLGRIAVAVVKGLTYLWS------LKILHRDVKPSNMLVNTR---GQVKLCDFGVSTQLVNS-IAKTYVG  155 (279)
T ss_pred             hHHhhcCCHHHHHHHHHHHHHHHHHHHH------CCEeeCCCCHHHEEECCC---CCEEEeeCCcceecccc-cccCCCC
Confidence            5332                56677777      999999999999999985   89999999999765433 3445688


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCCh-------HHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETD-------SETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~-------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ++.|+||               |+|+++|+|++|+.||.....       ......+.....  +.......++++.+++
T Consensus       156 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li  233 (279)
T cd06619         156 TNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDP--PVLPVGQFSEKFVHFI  233 (279)
T ss_pred             ChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCC--CCCCCCcCCHHHHHHH
Confidence            9999999               999999999999999964221       122222222211  1111235789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..+|++||++++++.||||....
T Consensus       234 ~~~l~~~P~~Rp~~~eil~~~~~~~~~  260 (279)
T cd06619         234 TQCMRKQPKERPAPENLMDHPFIVQYN  260 (279)
T ss_pred             HHHhhCChhhCCCHHHHhcCccccccc
Confidence            999999999999999999999997664

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=6.3e-33  Score=264.72  Aligned_cols=216  Identities=23%  Similarity=0.275  Sum_probs=168.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhC-CCCCcceeeeecCc-----ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE-----PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~-----~~~v~e~-~   77 (379)
                      ..||+|+||.||+|.+..+|+.+|+++...    ......+.+|+.+++.+ +||||+++++++..     +|+++|+ .
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~   92 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME   92 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc
Confidence            489999999999999999998888655432    23345578899999999 99999999997542     6899999 5


Q ss_pred             chhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          78 PPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      +.+...                   .|+.|||+      .||+||||||+||+++.+   +.+||+|||++.......  
T Consensus        93 ~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~i~H~dl~p~nill~~~---~~~kl~d~g~~~~~~~~~~~  163 (337)
T cd07852          93 TDLHAVIRANILEDVHKRYIMYQLLKALKYIHS------GNVIHRDLKPSNILLNSD---CRVKLADFGLARSLSELEEN  163 (337)
T ss_pred             cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CcEEEeeccchhcccccccc
Confidence            444443                   56677777      999999999999999985   899999999998654322  


Q ss_pred             ----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--------------
Q psy6046         137 ----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--------------  182 (379)
Q Consensus       137 ----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--------------  182 (379)
                          ......|++.|+||                |+|+++|+|++|++||.+....+....+....              
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T cd07852         164 PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSP  243 (337)
T ss_pred             ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhh
Confidence                23345688999999                99999999999999998766554444332211              


Q ss_pred             -------------CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccc
Q psy6046         183 -------------LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       183 -------------~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~  233 (379)
                                   ........+.++.++.++|.+||..||++|||+.++++|||+++.......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~~~~  307 (337)
T cd07852         244 FAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNPSDE  307 (337)
T ss_pred             hHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccCCCC
Confidence                         111122234578999999999999999999999999999999887654433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1.2e-32  Score=251.70  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=168.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|+||.||+|.+..+|+.|+++....    ......+.+|+++++.++||||+++++.+.+   +|+++||  ++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08529           5 LNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENG   84 (256)
T ss_pred             eEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCC
Confidence            4589999999999999999999888543321    2335668899999999999999999988765   8999998  55


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|.+.                      .|+.|||+      .|++||||||+||+++.+   +.++|+|||+++......
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~------~~i~h~dl~~~nili~~~---~~~~l~df~~~~~~~~~~  155 (256)
T cd08529          85 DLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS------KKILHRDIKSLNLFLDAY---DNVKIGDLGVAKLLSDNT  155 (256)
T ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCcceEEEeCC---CCEEEcccccceeccCcc
Confidence            65544                      45667776      999999999999999985   899999999998765433


Q ss_pred             -cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 -EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 -~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       ......|++.|+||               |+|+++|+|++|+.||...+..+....+..+..+...   ..++.++.++
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  232 (256)
T cd08529         156 NFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVS---QMYSQQLAQL  232 (256)
T ss_pred             chhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc---cccCHHHHHH
Confidence             23345688999999               9999999999999999988877777777665543222   2578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +.+||..+|++||++.+++.|||+
T Consensus       233 i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         233 IDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             HHHHccCCcccCcCHHHHhhCCCC
Confidence            999999999999999999999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=9.9e-33  Score=265.12  Aligned_cols=211  Identities=21%  Similarity=0.286  Sum_probs=163.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|+.+|++.....    .....+.+|+.+++.++||||+++++++.         ..|+++|
T Consensus        22 ~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  101 (353)
T cd07850          22 KPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVME  101 (353)
T ss_pred             EEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEe
Confidence            4899999999999999999999885433221    22346788999999999999999998753         2589999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .|.+...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus       102 ~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~------~gi~H~dlkp~Nil~~~~---~~~kL~Dfg~~~~~~~~~  172 (353)
T cd07850         102 LMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTSF  172 (353)
T ss_pred             ccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHEEECCC---CCEEEccCccceeCCCCC
Confidence            9 5554443                  56777777      999999999999999985   889999999998765444


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC----------------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF----------------  185 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~----------------  185 (379)
                      ......+++.|+||               |+||++|+|++|+.||.+.+....+..+.......                
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (353)
T cd07850         173 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYV  252 (353)
T ss_pred             CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHh
Confidence            44556788999999               99999999999999998776544443332210000                


Q ss_pred             ---------------Cccc--------ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         186 ---------------PDEL--------FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       186 ---------------~~~~--------~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                     +...        ....++.+.+||.+||..||++|||+.|+|.||||+...
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~  318 (353)
T cd07850         253 ENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWY  318 (353)
T ss_pred             hcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhcc
Confidence                           0000        113466789999999999999999999999999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.8e-32  Score=250.68  Aligned_cols=205  Identities=24%  Similarity=0.267  Sum_probs=167.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~--~   77 (379)
                      .+.||+|+||.||+|.+..+++.+|+++....    .....+.+|+.+++.++|||++++++.+..    +|+++|+  +
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEG   84 (257)
T ss_pred             EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCC
Confidence            45799999999999999999988885444322    223468899999999999999999887542    6899999  5


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +++.+.                      .++.+||+      .|++||||||+||+++.+   +.++|+|||++......
T Consensus        85 ~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~------~~i~H~di~p~nil~~~~---~~~~l~df~~~~~~~~~  155 (257)
T cd08223          85 GDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHE------KHILHRDLKTQNVFLTRT---NIIKVGDLGIARVLENQ  155 (257)
T ss_pred             CcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCchhEEEecC---CcEEEecccceEEeccc
Confidence            555443                      45666776      999999999999999875   89999999999876433


Q ss_pred             c-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 I-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      . ......+++.|+||               |+|+++|+|++|+.||.+.+.......+..+..+..   ...+++.+.+
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  232 (257)
T cd08223         156 CDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPM---PKDYSPELGE  232 (257)
T ss_pred             CCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCC---ccccCHHHHH
Confidence            2 33445789999999               999999999999999998877777666666554222   2368899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++.+||..+|.+|||+.++++||||
T Consensus       233 li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         233 LIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             HHHHHhccCcccCCCHHHHhcCCCC
Confidence            9999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=7.5e-33  Score=257.31  Aligned_cols=207  Identities=22%  Similarity=0.253  Sum_probs=160.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      ..||+|+||.||+|++..+|+.+|+++....    .....+.+|+++++.++||||+++++++.+   .|+++|| .+.+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~l   85 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDL   85 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccccCH
Confidence            4789999999999999999998885433221    122468899999999999999999998765   8899999 3333


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      ...                      .|+.|||.      .|++||||+|+||+++.+   +.+||+|||++....... .
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~------~~i~H~~l~p~nill~~~---~~~~l~dfg~~~~~~~~~~~  156 (284)
T cd07860          86 KKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHS------HRVLHRDLKPQNLLINTE---GAIKLADFGLARAFGVPVRT  156 (284)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEEeeccchhhcccCccc
Confidence            322                      66778877      999999999999999986   899999999987653321 2


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC------------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL------------------  183 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~------------------  183 (379)
                      .....+++.|+||                |+|+++|+|+||+.||.+.+..+...++.....                  
T Consensus       157 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07860         157 YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKP  236 (284)
T ss_pred             cccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHh
Confidence            2334567788888                999999999999999988766544433322110                  


Q ss_pred             CCC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++       ....+.++++++++|.+||..||++|||+.+++.||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         237 SFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             hcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            001       11123578999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG4721|consensus

Probab=100.00  E-value=2.5e-34  Score=273.45  Aligned_cols=196  Identities=18%  Similarity=0.192  Sum_probs=168.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA-   83 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~-   83 (379)
                      -||+|+.|.||+|+  -.++.||++|+...+     ..+|+-|++|+||||+.+.+++..   |||+|||  .|.||.. 
T Consensus       131 WlGSGaQGAVF~Gr--l~netVAVKKV~elk-----ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VL  203 (904)
T KOG4721|consen  131 WLGSGAQGAVFLGR--LHNETVAVKKVRELK-----ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVL  203 (904)
T ss_pred             hhccCcccceeeee--ccCceehhHHHhhhh-----hhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHH
Confidence            69999999999998  557788877766554     347889999999999999999987   8999999  8888887 


Q ss_pred             -------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccC
Q psy6046          84 -------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT  144 (379)
Q Consensus        84 -------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt  144 (379)
                                         .+++|||.      +.|||||||.-|||+..+   ..|||+|||-++...+....-+++||
T Consensus       204 ka~~~itp~llv~Wsk~IA~GM~YLH~------hKIIHRDLKSPNiLIs~~---d~VKIsDFGTS~e~~~~STkMSFaGT  274 (904)
T KOG4721|consen  204 KAGRPITPSLLVDWSKGIAGGMNYLHL------HKIIHRDLKSPNILISYD---DVVKISDFGTSKELSDKSTKMSFAGT  274 (904)
T ss_pred             hccCccCHHHHHHHHHHhhhhhHHHHH------hhHhhhccCCCceEeecc---ceEEeccccchHhhhhhhhhhhhhhh
Confidence                               57999999      999999999999999986   79999999999988777667789999


Q ss_pred             CCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCC
Q psy6046         145 PDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP  209 (379)
Q Consensus       145 ~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  209 (379)
                      ..||||               |+||+|||||||..||.+-+...++-.+-...+.+|-  +..+++.++=||+.||.-.|
T Consensus       275 VaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~Lpv--PstcP~GfklL~Kqcw~sKp  352 (904)
T KOG4721|consen  275 VAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPV--PSTCPDGFKLLLKQCWNSKP  352 (904)
T ss_pred             HhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccC--cccCchHHHHHHHHHHhcCC
Confidence            999999               9999999999999999876555444444444444442  24689999999999999999


Q ss_pred             CCCCCHHHHhcCcc
Q psy6046         210 MERMTAKEALKHPW  223 (379)
Q Consensus       210 ~~Rpt~~e~l~hp~  223 (379)
                      ..||++.++|.|-=
T Consensus       353 RNRPSFrqil~Hld  366 (904)
T KOG4721|consen  353 RNRPSFRQILLHLD  366 (904)
T ss_pred             CCCccHHHHHHHHh
Confidence            99999999999843

>KOG0614|consensus

Probab=100.00  E-value=2e-34  Score=270.97  Aligned_cols=213  Identities=24%  Similarity=0.343  Sum_probs=182.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEec------ccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKER------NVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~------~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      -||-|+||+|=++........+| .|++      +.++.+++..|-.||..++.|.||++|..+.+   .|+.||-  +|
T Consensus       427 TLGvGgFGRVELV~~~~~~~~fA-lKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGG  505 (732)
T KOG0614|consen  427 TLGVGGFGRVELVKVNSQKATFA-LKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGG  505 (732)
T ss_pred             hcccCccceEEEEEecccchHHH-HHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCc
Confidence            69999999999988655544455 3333      33556789999999999999999999988765   4555555  55


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +++..                    .|..|||.      +|||+|||||+|++++..   |.+||.|||+|+.+..+...
T Consensus       506 ElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~------k~iIYRDLKPENllLd~~---Gy~KLVDFGFAKki~~g~KT  576 (732)
T KOG0614|consen  506 ELWTILRDRGSFDDYTARFYVACVLEAFEYLHR------KGIIYRDLKPENLLLDNR---GYLKLVDFGFAKKIGSGRKT  576 (732)
T ss_pred             hhhhhhhhcCCcccchhhhhHHHHHHHHHHHHh------cCceeccCChhheeeccC---CceEEeehhhHHHhccCCce
Confidence            55554                    78999999      999999999999999986   99999999999999999889


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccccCCCHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s~~~~~li  201 (379)
                      .++||||.|.||               |||+++||||+|.+||.+.++...+..|.+|-  +.+|.    .++..+.+||
T Consensus       577 wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr----~I~k~a~~Li  652 (732)
T KOG0614|consen  577 WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPR----RITKTATDLI  652 (732)
T ss_pred             eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhccc----ccchhHHHHH
Confidence            999999999999               99999999999999999999999999998874  44553    6899999999


Q ss_pred             HHhcccCCCCCCC-----HHHHhcCccccCCcccccccCC
Q psy6046         202 AKILIKNPMERMT-----AKEALKHPWLMNKKQIMTRVGC  236 (379)
Q Consensus       202 ~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~~~~~  236 (379)
                      +++...+|.+|..     +.++.+|.||.+++|.......
T Consensus       653 k~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~~~  692 (732)
T KOG0614|consen  653 KKLCRDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRSRT  692 (732)
T ss_pred             HHHHhcCcHhhhccccCChHHHHhhhhhhcCChhhhhhcc
Confidence            9999999999995     8999999999999988765433

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-32  Score=259.16  Aligned_cols=215  Identities=22%  Similarity=0.347  Sum_probs=174.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ..||+|+||.||+|.+..+++.+|++......     ....+..|+++++.++||||+++++.+.+   .|+++|+  +|
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGG   86 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCC
Confidence            47999999999999999999988854333221     23458899999999999999999988665   7999998  55


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .|++.                      .|+.|||+      .|++||||||+||+++.+   +.++|+|||++.......
T Consensus        87 ~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~~l~dfg~~~~~~~~~  157 (316)
T cd05574          87 ELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL------LGIVYRDLKPENILLHES---GHIMLSDFDLSKQSDVEP  157 (316)
T ss_pred             CHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH------CCeeccCCChHHeEEcCC---CCEEEeecchhhcccccc
Confidence            66554                      45677777      999999999999999975   899999999987543211


Q ss_pred             ------------------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh
Q psy6046         137 ------------------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD  171 (379)
Q Consensus       137 ------------------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~  171 (379)
                                                    ......||..|+||               |+|+++|+|++|+.||.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  237 (316)
T cd05574         158 PPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR  237 (316)
T ss_pred             cccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch
Confidence                                          11234688899999               999999999999999998888


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCC----HHHHhcCccccCCccccccc
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT----AKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~~~~~~~~~~~~  234 (379)
                      ...+..+......++..  ..+++.+.++|.+||..||++|||    +++++.||||++..+.....
T Consensus       238 ~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~~~~  302 (316)
T cd05574         238 DETFSNILKKEVTFPGS--PPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRH  302 (316)
T ss_pred             HHHHHHHhcCCccCCCc--cccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhhccc
Confidence            77777777665555433  237999999999999999999999    99999999999887666544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.1e-33  Score=257.84  Aligned_cols=211  Identities=23%  Similarity=0.281  Sum_probs=162.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||.||+|.+..+|+.+|++.....   .....+.+|+.+++.++||||+++++.+..   +|+++||  ++.+
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l   86 (286)
T cd06622           7 DELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSL   86 (286)
T ss_pred             hhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCH
Confidence            4799999999999999999999885433321   223568899999999999999999987654   8999999  4444


Q ss_pred             hHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          81 YQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        81 ~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      ...                       .|+.|||.     +.||+||||||+||+++.+   +.++|+|||++...... .
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~-----~~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~~~~-~  157 (286)
T cd06622          87 DKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE-----EHNIIHRDVKPTNVLVNGN---GQVKLCDFGVSGNLVAS-L  157 (286)
T ss_pred             HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh-----cCCEeeCCCCHHHEEECCC---CCEEEeecCCcccccCC-c
Confidence            332                       45666664     2599999999999999985   89999999999765332 2


Q ss_pred             ccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         138 IRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      .....+++.|+||                     |+||++|+|++|+.||...+.......+.......+...+..++++
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd06622         158 AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDD  237 (286)
T ss_pred             cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHH
Confidence            3344577778887                     8999999999999999776555444433221111122333468999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+||.+||..+|++||++.+++.||||....
T Consensus       238 ~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~  269 (286)
T cd06622         238 AQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYK  269 (286)
T ss_pred             HHHHHHHHcccCcccCCCHHHHhcChhhhhcc
Confidence            99999999999999999999999999997665

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.8e-32  Score=254.65  Aligned_cols=209  Identities=22%  Similarity=0.158  Sum_probs=166.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|.+..++..+++ |....   .....+.+|+.+++.++||||+++++.+..   .|+++||  +|.+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l   89 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAA-KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV   89 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEE-EEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcH
Confidence            3699999999999999999987774 44433   234568889999999999999999987654   7899999  4454


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|+.|||+      .|++||||||+||+++..   +.+||+|||++....... ..
T Consensus        90 ~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~------~~i~H~dlkp~nili~~~---~~~kl~dfg~~~~~~~~~~~~  160 (282)
T cd06643          90 DAVMLELERPLTEPQIRVVCKQTLEALNYLHE------NKIIHRDLKAGNILFTLD---GDIKLADFGVSAKNTRTIQRR  160 (282)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCcccEEEccC---CCEEEcccccccccccccccc
Confidence            332                     56777777      999999999999999875   889999999987653321 23


Q ss_pred             cccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         139 RELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ....+++.|+||                    |+||++|+|++|++||...+..+....+....... ......++.++.
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  239 (282)
T cd06643         161 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPT-LAQPSRWSSEFK  239 (282)
T ss_pred             ccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCC-CCCccccCHHHH
Confidence            445688889988                    99999999999999998887776666665543221 112235789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||+.++++||||....
T Consensus       240 ~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  269 (282)
T cd06643         240 DFLKKCLEKNVDARWTTTQLLQHPFVTVNS  269 (282)
T ss_pred             HHHHHHccCChhhCcCHHHHhcCCCEeccC
Confidence            999999999999999999999999997643

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.9e-32  Score=254.60  Aligned_cols=207  Identities=22%  Similarity=0.306  Sum_probs=161.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|.++.+|+.+|++......    ....+.+|+.+++.++|||++++++++.+   +|+++||  ++.
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   86 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTV   86 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccH
Confidence            47999999999999999999988854333221    22457899999999999999999998764   7899999  333


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      +...                    .++.|||+      +|++||||||+||+++.+   +.++|+|||++....... ..
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07847          87 LNELEKNPRGVPEHLIKKIIWQTLQAVNFCHK------HNCIHRDVKPENILITKQ---GQIKLCDFGFARILTGPGDDY  157 (286)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCChhhEEEcCC---CcEEECccccceecCCCcccc
Confidence            2222                    55667777      999999999999999875   889999999998765433 23


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC-------------------C
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ-------------------L  183 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~-------------------~  183 (379)
                      ....++..|+||                |+|+++|+|++|.+||.+.+..+....+....                   .
T Consensus       158 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07847         158 TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGL  237 (286)
T ss_pred             cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccc
Confidence            345677888888                99999999999999998877655544432210                   0


Q ss_pred             CCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..+.        ..++.++..+.+||.+||..+|++|||+.|++.||||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         238 SIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             cCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            0111        1234678999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG4279|consensus

Probab=100.00  E-value=4.6e-34  Score=276.73  Aligned_cols=207  Identities=19%  Similarity=0.232  Sum_probs=171.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      |||+|+||+||.|+|+.|....| +|.+..   ...+.+..||.+.+.|+|.|||+|.+.+.+   +-+.||-  ||+|.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIa-IKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIA-IKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEE-eeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            89999999999999999988888 565544   345679999999999999999999999776   5577887  88887


Q ss_pred             HH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-Ccc
Q psy6046          82 QA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-GIE  137 (379)
Q Consensus        82 ~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-~~~  137 (379)
                      +.                       .++.|||.      +.|||||||-+|+|++.-  .|.+||+|||-++.+.. +..
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLHe------n~IVHRDIKGDNVLvNTy--SGvlKISDFGTsKRLAginP~  732 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLHE------NKIVHRDIKGDNVLVNTY--SGVLKISDFGTSKRLAGINPC  732 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhhh------cceeeccccCCcEEEeec--cceEEecccccchhhccCCcc
Confidence            76                       55666666      999999999999999875  38999999999987653 334


Q ss_pred             ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCC-ChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         138 IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       138 ~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      ..++.||..||||                 |+||++.||.||++||... ++...+-  +-|-+...++++..+|.+++.
T Consensus       733 TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMF--kVGmyKvHP~iPeelsaeak~  810 (1226)
T KOG4279|consen  733 TETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMF--KVGMYKVHPPIPEELSAEAKN  810 (1226)
T ss_pred             ccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhh--hhcceecCCCCcHHHHHHHHH
Confidence            5678899999999                 9999999999999999753 3333332  234444444455578999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||.+|+.+||.+||+|.++|.+||++..
T Consensus       811 FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  811 FILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             HHHHHcCCCcccCccHHHhccCcccccC
Confidence            9999999999999999999999999865

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.6e-32  Score=253.34  Aligned_cols=204  Identities=22%  Similarity=0.287  Sum_probs=161.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhC-CCCCcceeeeecC---------cceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLI-KVEPIEKYYSLDP---------EPLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l-~hpnIv~~~~~~~---------~~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..+++.+|+ |....  .....+.+|+.+++.+ +||||+++++.+.         .+|+++||
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~ai-k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~   90 (272)
T cd06637          12 ELVGNGTYGQVYKGRHVKTGQLAAI-KVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF   90 (272)
T ss_pred             HheeecCCeEEEEEEEcCCCcEEEE-EEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEc
Confidence            4799999999999999999988884 44433  2345688999999998 6999999998754         26899999


Q ss_pred             --CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          77 --RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        77 --~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                        +|++.+.                      .|+.|||+      +||+||||||+||+++.+   +.++|+|||++...
T Consensus        91 ~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~------~~ivh~dl~~~nili~~~---~~~~l~Dfg~~~~~  161 (272)
T cd06637          91 CGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ------HKVIHRDIKGQNVLLTEN---AEVKLVDFGVSAQL  161 (272)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCCccCCCCHHHEEECCC---CCEEEccCCCceec
Confidence              5555554                      55677777      999999999999999975   78999999999865


Q ss_pred             ccCc-cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         133 LDGI-EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       133 ~~~~-~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      .... ......|++.|+||                    |+||++|+|++|..||...........+.....  +.....
T Consensus       162 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~  239 (272)
T cd06637         162 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPA--PRLKSK  239 (272)
T ss_pred             ccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCC--CCCCCC
Confidence            4322 23446688888888                    899999999999999977665544444433222  111223


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++..+.+||.+||..+|.+|||+.+++.||||
T Consensus       240 ~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         240 KWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             CcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence            578999999999999999999999999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.3e-32  Score=262.74  Aligned_cols=214  Identities=23%  Similarity=0.299  Sum_probs=165.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e~   76 (379)
                      ..||+|+||+||+|++..+|+.||+++....    .....+.+|+.+++.++||||+++++++.        ..|+++||
T Consensus        11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~   90 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYEL   90 (337)
T ss_pred             EEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeC
Confidence            4899999999999999999999985444321    22346788999999999999999988653        26899999


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       ++.+...                    .|+.|||+      +|++||||||+||+++.+   +.+||+|||++......
T Consensus        91 ~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~i~H~dlkp~Nil~~~~---~~~kL~Dfg~~~~~~~~  161 (337)
T cd07858          91 MDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHS------ANVLHRDLKPSNLLLNAN---CDLKICDFGLARTTSEK  161 (337)
T ss_pred             CCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEEcCC---CCEEECcCccccccCCC
Confidence             5555443                    56777777      999999999999999875   88999999999865433


Q ss_pred             -ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC----------------
Q psy6046         136 -IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ----------------  182 (379)
Q Consensus       136 -~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~----------------  182 (379)
                       .......++..|+||                |+||++|+|++|++||.+.+.......+....                
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (337)
T cd07858         162 GDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKA  241 (337)
T ss_pred             cccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhh
Confidence             233455688899999                99999999999999998765443333222100                


Q ss_pred             -----------CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         183 -----------LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       183 -----------~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                 ........+.+++++.+||.+||..+|++|||++++++||||.......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~  301 (337)
T cd07858         242 RRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPS  301 (337)
T ss_pred             hHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcc
Confidence                       0000112346899999999999999999999999999999998765443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.1e-32  Score=251.87  Aligned_cols=206  Identities=24%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~   72 (379)
                      .+.+||+|+||.||+|.+..+++.+|++......           ..+.+.+|+.+++.++||||+++++++.+   .++
T Consensus         4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (267)
T cd06628           4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNI   83 (267)
T ss_pred             ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEE
Confidence            4568999999999999999899888854332211           11458899999999999999999998665   789


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ++||  +++|...                    .|+.|||+      .|++||||+|+||+++++   +.++|+|||.++
T Consensus        84 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~------~~ivH~di~p~nil~~~~---~~~~l~dfg~~~  154 (267)
T cd06628          84 FLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHN------RGIIHRDIKGANILVDNK---GGIKISDFGISK  154 (267)
T ss_pred             EEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh------cCcccccCCHHHEEEcCC---CCEEecccCCCc
Confidence            9999  5555433                    56777777      999999999999999875   899999999998


Q ss_pred             eeccCc-------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         131 VILDGI-------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       131 ~~~~~~-------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      ......       ......|++.|+||               |+|+++|+|++|+.||.+.+.......+.....   +.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~  231 (267)
T cd06628         155 KLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENAS---PE  231 (267)
T ss_pred             ccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCC---Cc
Confidence            764221       11234578889999               999999999999999987766555555444322   12


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ....++..+.++|.+||..||.+||++.++++||||
T Consensus       232 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         232 IPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             CCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence            223578999999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0696|consensus

Probab=100.00  E-value=1.2e-33  Score=259.99  Aligned_cols=218  Identities=22%  Similarity=0.308  Sum_probs=184.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      |||+|+||.|.+|..+.|.+.|| +|+...      .+.+--+.|-++|.... -|.++++...++.   +|.||||  +
T Consensus       356 VlGKGSFGKVlLaerkgtdELyA-iKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvnG  434 (683)
T KOG0696|consen  356 VLGKGSFGKVLLAERKGTDELYA-IKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVNG  434 (683)
T ss_pred             EeccCccceeeeecccCcchhhh-hhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEecC
Confidence            89999999999999999988888 444332      44556677888888776 5678888877665   8999999  7


Q ss_pred             chhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCccccccc
Q psy6046          78 PPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELL  142 (379)
Q Consensus        78 g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~~~~~~~  142 (379)
                      |+|.-.              -|....-.+++||++||++||||.+|++++.+   |++||+|||+++.-. .+....++|
T Consensus       435 GDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~e---GHiKi~DFGmcKEni~~~~TTkTFC  511 (683)
T KOG0696|consen  435 GDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSE---GHIKIADFGMCKENIFDGVTTKTFC  511 (683)
T ss_pred             chhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccC---CceEeeecccccccccCCcceeeec
Confidence            776544              33444445666777999999999999999997   999999999998643 444677899


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |||.|+||               |+||++||||.|++||.|.+..++++.|......+|.    .+|.++.++.+.+|..
T Consensus       512 GTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPK----slSkEAv~ickg~ltK  587 (683)
T KOG0696|consen  512 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPK----SLSKEAVAICKGLLTK  587 (683)
T ss_pred             CCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcc----cccHHHHHHHHHHhhc
Confidence            99999999               9999999999999999999999999999999988886    4899999999999999


Q ss_pred             CCCCCCC-----HHHHhcCccccCCcccccccC
Q psy6046         208 NPMERMT-----AKEALKHPWLMNKKQIMTRVG  235 (379)
Q Consensus       208 dP~~Rpt-----~~e~l~hp~~~~~~~~~~~~~  235 (379)
                      .|.+|..     -.++..||||+...|...+..
T Consensus       588 ~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~  620 (683)
T KOG0696|consen  588 HPGKRLGCGPEGERDIREHPFFRRIDWEKLERR  620 (683)
T ss_pred             CCccccCCCCccccchhhCcchhhccHHHHhhc
Confidence            9999984     468999999999998876553

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.2e-33  Score=270.28  Aligned_cols=209  Identities=15%  Similarity=0.110  Sum_probs=157.2

Q ss_pred             cCcCCCCceEEEEEEEcC--CCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKT--TKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l~~   82 (379)
                      ..||+|+||.||+|....  ++..+| +|.....  ....+|+.+|+.++||||+++++++..   .|++||+ .+.++.
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~-vK~~~~~--~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~  174 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVI-VKAVTGG--KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYKCDLFT  174 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEE-EEecccc--ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcCCCHHH
Confidence            379999999999997644  344555 5554432  346789999999999999999887653   7899988 555555


Q ss_pred             H--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---ccc
Q psy6046          83 A--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---EIR  139 (379)
Q Consensus        83 ~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---~~~  139 (379)
                      .                    .|+.|||.      +||+||||||+|||++.+   +.++|+|||+++......   ...
T Consensus       175 ~l~~~~~l~~~~~~~i~~ql~~aL~~LH~------~givHrDlkp~Nill~~~---~~~~l~DfG~a~~~~~~~~~~~~~  245 (392)
T PHA03207        175 YVDRSGPLPLEQAITIQRRLLEALAYLHG------RGIIHRDVKTENIFLDEP---ENAVLGDFGAACKLDAHPDTPQCY  245 (392)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEEcCC---CCEEEccCccccccCccccccccc
Confidence            4                    56777777      999999999999999985   899999999997654332   123


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh---HHHHHHHHh----CCCCCCc----------
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD---SETFRNISK----AQLDFPD----------  187 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~---~~~~~~i~~----~~~~~~~----------  187 (379)
                      ...||+.|+||               |+||++|+|++|+.||.+...   ...+..+..    ....++.          
T Consensus       246 ~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  325 (392)
T PHA03207        246 GWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHF  325 (392)
T ss_pred             ccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHH
Confidence            46799999999               999999999999999976432   122222211    1111110          


Q ss_pred             ---------------cc-ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         188 ---------------EL-FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       188 ---------------~~-~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                     .. ...++.++.+||.+||..||.+|||+.++|.||||....+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~~  383 (392)
T PHA03207        326 KQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEPI  383 (392)
T ss_pred             HhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccch
Confidence                           00 0235778999999999999999999999999999987553

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.9e-32  Score=261.15  Aligned_cols=212  Identities=23%  Similarity=0.236  Sum_probs=164.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccc----------------hHHHHHHHHHHhCCCCCcceeeeecCc--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQG----------------VVIVDEEQLLKLIKVEPIEKYYSLDPE--   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~----------------~~~~~E~~il~~l~hpnIv~~~~~~~~--   69 (379)
                      ..+||+|+||.||+|.+..+|+.||+++.......                ..+.+|+.+++.++||||+++++++..  
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            45899999999999999999999886443322111                147899999999999999999988654  


Q ss_pred             -ceEEeeC-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          70 -PLLGLNP-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        70 -~~~v~e~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                       .|+++|+ .|.+.+.                    .|+.|||.      .||+||||+|+||+++.+   +.++|+|||
T Consensus        94 ~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~------~~i~H~dl~~~nill~~~---~~~kl~dfg  164 (335)
T PTZ00024         94 FINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHK------WYFMHRDLSPANIFINSK---GICKIADFG  164 (335)
T ss_pred             cEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecccccHHHeEECCC---CCEEECCcc
Confidence             7899999 5655554                    45667776      999999999999999875   899999999


Q ss_pred             cceeeccC---------------ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHH
Q psy6046         128 ISRVILDG---------------IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFR  176 (379)
Q Consensus       128 ~a~~~~~~---------------~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~  176 (379)
                      ++......               .......+++.|+||                |+||++|+|++|++||.+.+..+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~  244 (335)
T PTZ00024        165 LARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLG  244 (335)
T ss_pred             ceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            99765411               112234567789888                99999999999999999887776665


Q ss_pred             HHHhCCCCCC------------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         177 NISKAQLDFP------------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       177 ~i~~~~~~~~------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+.......+                        .......+.++.++|.+||..+|++|||+++++.||||+...
T Consensus       245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        245 RIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDP  320 (335)
T ss_pred             HHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCC
Confidence            5533110000                        011234688999999999999999999999999999998664

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.4e-32  Score=261.34  Aligned_cols=212  Identities=15%  Similarity=0.133  Sum_probs=158.6

Q ss_pred             ccCcCCC--CceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNR--ARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G--~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .++||+|  +||+||+|.++.+|+.||+++....    .....+.+|+.+++.++||||+++++++..   .|+++||  
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            3589999  7899999999999999885443222    122457889999999999999999988654   8999999  


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|++.+.                      .|+.|||+      +||+||||||+||+++.+   +.++++|||.+.....
T Consensus        83 ~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~iiH~dlkp~Nil~~~~---~~~~l~~~~~~~~~~~  153 (327)
T cd08227          83 YGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH------MGYVHRSVKASHILISVD---GKVYLSGLRSNLSMIN  153 (327)
T ss_pred             CCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCChhhEEEecC---CcEEEcccchhhcccc
Confidence            5555433                      56777777      999999999999999985   7899999987644321


Q ss_pred             Cc--------cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC---
Q psy6046         135 GI--------EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP---  186 (379)
Q Consensus       135 ~~--------~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~---  186 (379)
                      ..        ......++..|+||                 |+||++|+|++|+.||..............+..+..   
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  233 (327)
T cd08227         154 HGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDT  233 (327)
T ss_pred             ccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccc
Confidence            11        11223466778888                 999999999999999987654443333322211100   


Q ss_pred             ---------------------------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         187 ---------------------------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       187 ---------------------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                                                             ......+++.+.+||.+||..||++|||++++++||||++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         234 TTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI  313 (327)
T ss_pred             cchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhc
Confidence                                                   00112457889999999999999999999999999999764


Q ss_pred             c
Q psy6046         228 K  228 (379)
Q Consensus       228 ~  228 (379)
                      .
T Consensus       314 ~  314 (327)
T cd08227         314 K  314 (327)
T ss_pred             c
Confidence            3

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=2.1e-32  Score=251.97  Aligned_cols=205  Identities=19%  Similarity=0.208  Sum_probs=161.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||.||+|++..+++.+|+ |....   .....+.+|+.+++.++||||+++++.+.+   +|+++||  +|.|
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L   93 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAI-KVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSL   93 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEE-EEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcH
Confidence            4799999999999999999988884 44332   223457889999999999999999987654   8999999  5666


Q ss_pred             hHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          81 YQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        81 ~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      .+.                    .|+.|||.      .|++|+||||+||+++.+   +.++|+|||++....... ...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~nili~~~---~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd06645          94 QDIYHVTGPLSESQIAYVSRETLQGLYYLHS------KGKMHRDIKGANILLTDN---GHVKLADFGVSAQITATIAKRK  164 (267)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEECcceeeeEccCcccccc
Confidence            654                    55677777      999999999999999875   889999999987654322 234


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-cccCCCHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-LFEDISPEAKDF  200 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~l  200 (379)
                      ...|++.|+||                  |+||++|+|++|..||...................+.. ....++..+.++
T Consensus       165 ~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (267)
T cd06645         165 SFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHF  244 (267)
T ss_pred             cccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHH
Confidence            45788999998                  99999999999999997665544443333333322211 112478899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCcc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      |.+||..+|++|||+++++.|||
T Consensus       245 i~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         245 VKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             HHHHccCCchhCcCHHHHhcCCC
Confidence            99999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=2e-32  Score=258.09  Aligned_cols=210  Identities=21%  Similarity=0.252  Sum_probs=161.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|.+..+|..+|+ |.....    ....+.+|+++++.++||||+++++.+.+   +|+++||  +|
T Consensus         6 ~~~lg~G~~g~v~~~~~~~~~~~~a~-k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~   84 (308)
T cd06615           6 LGELGAGNGGVVTKVLHRPSGLIMAR-KLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   84 (308)
T ss_pred             EeeccCCCCeEEEEEEEcCCCeEEEE-EEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCC
Confidence            35899999999999999999988774 443322    23458899999999999999999988654   8999999  66


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +|.+.                    .|+.|||+     ..+++||||||+||+++.+   +.+||+|||++...... ..
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~-----~~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~~~~-~~  155 (308)
T cd06615          85 SLDQVLKKAGRIPENILGKISIAVLRGLTYLRE-----KHKIMHRDVKPSNILVNSR---GEIKLCDFGVSGQLIDS-MA  155 (308)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-----hCCEEECCCChHHEEEecC---CcEEEccCCCccccccc-cc
Confidence            76655                    45666664     2599999999999999875   78999999998765332 23


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC------------------
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF------------------  185 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~------------------  185 (379)
                      ...+|++.|+||               |+||++|+|++|..||.+.+.......+.......                  
T Consensus       156 ~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (308)
T cd06615         156 NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPR  235 (308)
T ss_pred             ccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccc
Confidence            456788999999               99999999999999997655443332221110000                  


Q ss_pred             ----------------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         186 ----------------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       186 ----------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                                      |......+++++++|+.+||..+|++|||+.+++.||||...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         236 PMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             hhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence                            000011368899999999999999999999999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.9e-32  Score=256.69  Aligned_cols=209  Identities=21%  Similarity=0.207  Sum_probs=166.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecc--cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERN--VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      .||+|+||.||+|.+..++..+++++...  ......+.+|+.+++.++||||+++++.+..   .|+++||  +|+|..
T Consensus        27 ~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~  106 (296)
T cd06654          27 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTD  106 (296)
T ss_pred             EecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHH
Confidence            79999999999999999999988543332  2334568899999999999999999987653   8999999  666655


Q ss_pred             H-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccc
Q psy6046          83 A-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELL  142 (379)
Q Consensus        83 ~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~  142 (379)
                      .                   .|+.|||+      .||+||||||+||+++.+   +.++|+|||++....... ......
T Consensus       107 ~~~~~~~~~~~~~~i~~ql~~aL~~LH~------~gi~H~dLkp~Nill~~~---~~~kl~dfg~~~~~~~~~~~~~~~~  177 (296)
T cd06654         107 VVTETCMDEGQIAAVCRECLQALEFLHS------NQVIHRDIKSDNILLGMD---GSVKLTDFGFCAQITPEQSKRSTMV  177 (296)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEcCC---CCEEECccccchhccccccccCccc
Confidence            4                   55677776      999999999999999875   899999999987654332 223457


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |++.|+||               |+||++|+|++|+.||...+.......+...... +......+++.+.++|.+||..
T Consensus       178 ~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~  256 (296)
T cd06654         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTP-ELQNPEKLSAIFRDFLNRCLDM  256 (296)
T ss_pred             CCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCC-CCCCccccCHHHHHHHHHHCcC
Confidence            88999999               9999999999999999887765444433332211 1112246889999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|++|||+.+++.||||....
T Consensus       257 ~p~~Rpt~~eil~~~~~~~~~  277 (296)
T cd06654         257 DVEKRGSAKELLQHQFLKIAK  277 (296)
T ss_pred             CcccCcCHHHHhhChhhhccC
Confidence            999999999999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=2.7e-32  Score=255.04  Aligned_cols=213  Identities=18%  Similarity=0.212  Sum_probs=163.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|++|.||+|.+..+|+.||+++....    .....+.+|+.+++.++||||+++++++.+   +|+++|| .+.
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (294)
T PLN00009          7 VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLD   86 (294)
T ss_pred             EEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccccc
Confidence            35899999999999999999998885443222    122467899999999999999999998765   8999999 444


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      +...                      .|+.|||.      +|++||||+|+||+++.+  ++.+||+|||++....... 
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~i~H~dl~p~nill~~~--~~~~kl~dfg~~~~~~~~~~  158 (294)
T PLN00009         87 LKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHS------HRVLHRDLKPQNLLIDRR--TNALKLADFGLARAFGIPVR  158 (294)
T ss_pred             HHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCCcceEEEECC--CCEEEEcccccccccCCCcc
Confidence            4332                      55666666      999999999999999864  3679999999997653221 


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC---------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF---------------  185 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~---------------  185 (379)
                      ......+++.|+||                |+|+++|+|++|.+||.+.+..+...++.......               
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (294)
T PLN00009        159 TFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYK  238 (294)
T ss_pred             ccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhh
Confidence            22344677888888                99999999999999998876655554443210000               


Q ss_pred             ---C-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         186 ---P-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       186 ---~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                         +       ....+.+++.+.+++.+||..+|++||++.++++||||.+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        239 SAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             hhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence               0       011235789999999999999999999999999999998654

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=4.5e-32  Score=253.44  Aligned_cols=210  Identities=21%  Similarity=0.171  Sum_probs=165.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|++..+++.+++ |....   .....+.+|+.+++.++||||+++++.+..   +|++|||  +|.+
T Consensus        18 ~~lg~g~~g~vy~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l   96 (292)
T cd06644          18 GELGDGAFGKVYKAKNKETGALAAA-KVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAV   96 (292)
T ss_pred             heecCCCCeEEEEEEECCCCceEEE-EEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcH
Confidence            3799999999999999999988884 44333   234568889999999999999999987543   8999999  5554


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .++.|||.      +|++||||||+||+++.+   +.++|+|||++....... ..
T Consensus        97 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~kl~dfg~~~~~~~~~~~~  167 (292)
T cd06644          97 DAIMLELDRGLTEPQIQVICRQMLEALQYLHS------MKIIHRDLKAGNVLLTLD---GDIKLADFGVSAKNVKTLQRR  167 (292)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc------CCeeecCCCcceEEEcCC---CCEEEccCccceecccccccc
Confidence            332                     45556665      999999999999999875   899999999987643221 22


Q ss_pred             cccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         139 RELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ....+++.|+||                    |+||++|+|++|.+||...+.......+.....+. ......++.++.
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  246 (292)
T cd06644         168 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPT-LSQPSKWSMEFR  246 (292)
T ss_pred             ceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCcc-CCCCcccCHHHH
Confidence            345577788887                    89999999999999998877666666555443221 112236789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ++|.+||..+|++||+++++++||||....+
T Consensus       247 ~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~  277 (292)
T cd06644         247 DFLKTALDKHPETRPSAAQLLEHPFVSSVTS  277 (292)
T ss_pred             HHHHHHhcCCcccCcCHHHHhcCcccccccc
Confidence            9999999999999999999999999976653

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.4e-32  Score=248.60  Aligned_cols=206  Identities=19%  Similarity=0.230  Sum_probs=168.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|+||.||+|.+..+++.+|++.....    .....+.+|+.+++.++||||+++++.+..   .++++||  +|
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGG   84 (256)
T ss_pred             EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCC
Confidence            35799999999999999999988885433221    234568899999999999999999987654   8999999  55


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|.+.                      .++.|||+      +|++||||+|+||+++.+  ++.+||+|||++.......
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~------~~i~h~dl~~~nil~~~~--~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          85 TLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT------KLILHRDLKTQNILLDKH--KMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC--CCEEEEccCCCceecCCCc
Confidence            55543                      45666776      999999999999999865  3578999999998876554


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ......|++.|+||               |+|+++|+|++|..||.+.+.......+.......   ....+++++.+++
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li  233 (256)
T cd08220         157 KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAP---ISDRYSPDLRQLI  233 (256)
T ss_pred             cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCC---CCCCcCHHHHHHH
Confidence            44556788899999               99999999999999999888777776666544321   2235899999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .+||..+|.+|||+.+++.||||
T Consensus       234 ~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         234 LSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             HHHccCChhhCCCHHHHhhCCCC
Confidence            99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=2.2e-32  Score=254.20  Aligned_cols=209  Identities=23%  Similarity=0.311  Sum_probs=164.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|.+..+|+.+|+++....    .....+.+|+.+++.++||||+++++++.+   .|+++|+ +++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (286)
T cd07832           5 LGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYMPSD   84 (286)
T ss_pred             EeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecccCCC
Confidence            45799999999999999999998885433322    123568899999999999999999998654   7899999 666


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      |.+.                     .|+.|||+      .|++|+||||+||+++..   +.++|+|||++.......  
T Consensus        85 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~ni~~~~~---~~~~l~dfg~~~~~~~~~~~  155 (286)
T cd07832          85 LSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHA------NGIMHRDLKPANLLISAD---GVLKIADFGLARLFSEEEPR  155 (286)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCcCHHHEEEcCC---CcEEEeeeeecccccCCCCC
Confidence            6654                     55677777      999999999999999985   889999999998764432  


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-----------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-----------------  183 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-----------------  183 (379)
                      ......|+..|+||                |+|+++|+|++|.+||.+.+..+.+..+.....                 
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T cd07832         156 LYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYN  235 (286)
T ss_pred             ccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhh
Confidence            13345688889998                999999999999999988776655554433110                 


Q ss_pred             --CCC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         184 --DFP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       184 --~~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                        .++       ....+..+..+.+||.+||..+|.+|||++++++||||.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         236 KITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             cccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence              011       012235689999999999999999999999999999983

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.6e-32  Score=257.32  Aligned_cols=211  Identities=21%  Similarity=0.211  Sum_probs=166.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.+..+|+.||++.....  ...+.+.+|+.+++.++||||+++++.+..   .|+++||  +|++.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  104 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  104 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHH
Confidence            4799999999999999999999885443322  234568899999999999999999988654   8999999  66665


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      ..                   .|+.|||+      .|++||||||+||+++.+   +.++|+|||++....... .....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~L~~LH~------~~i~H~dL~p~Nili~~~---~~~~l~Dfg~~~~~~~~~~~~~~~  175 (297)
T cd06656         105 DVVTETCMDEGQIAAVCRECLQALDFLHS------NQVIHRDIKSDNILLGMD---GSVKLTDFGFCAQITPEQSKRSTM  175 (297)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEECcCccceEccCCccCcCcc
Confidence            54                   45677777      999999999999999875   899999999997654332 23345


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      .+++.|+||               |+||++|+|++|..||.+.+.......+.....+ +......+++.+.+|+.+||.
T Consensus       176 ~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~  254 (297)
T cd06656         176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTP-ELQNPERLSAVFRDFLNRCLE  254 (297)
T ss_pred             cCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCC-CCCCccccCHHHHHHHHHHcc
Confidence            788899999               9999999999999999876654433333222111 111224578999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCcc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      .+|++|||+.+++.||||.....
T Consensus       255 ~~p~~Rps~~~il~~~~~~~~~~  277 (297)
T cd06656         255 MDVDRRGSAKELLQHPFLKLAKP  277 (297)
T ss_pred             CChhhCcCHHHHhcCchhccccc
Confidence            99999999999999999986653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-32  Score=251.90  Aligned_cols=208  Identities=24%  Similarity=0.258  Sum_probs=168.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||.|+||.||+|++..+|+.+| +|....    .....+.+|+.+++.++||||+++++.+.+   +|+++|+  +|.
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~-ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVA-IKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGS   85 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEE-EEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCc
Confidence            479999999999999999998888 454433    223468899999999999999999987654   7899999  566


Q ss_pred             hhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-cccc
Q psy6046          80 VYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIR  139 (379)
Q Consensus        80 l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~~  139 (379)
                      +.+.                   .|+.|||+      .+++||||+|+||+++++   +.++|+|||+++..... ....
T Consensus        86 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~------~~i~h~dl~p~ni~i~~~---~~~~l~d~g~~~~~~~~~~~~~  156 (274)
T cd06609          86 CLDLLKPGKLDETYIAFILREVLLGLEYLHE------EGKIHRDIKAANILLSEE---GDVKLADFGVSGQLTSTMSKRN  156 (274)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEECCC---CCEEEcccccceeecccccccc
Confidence            6555                   56677777      999999999999999985   89999999999887543 2334


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...+++.|+||               |+|+++|+|++|++||.+.+.......+.....+....  ..+++++.+++.+|
T Consensus       157 ~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~  234 (274)
T cd06609         157 TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEG--NKFSKPFKDFVSLC  234 (274)
T ss_pred             cccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcc--cccCHHHHHHHHHH
Confidence            46788899999               99999999999999998777666665555543222111  12789999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..+|.+|||+++++.||||....
T Consensus       235 l~~~p~~Rpt~~~il~~~~~~~~~  258 (274)
T cd06609         235 LNKDPKERPSAKELLKHKFIKKAK  258 (274)
T ss_pred             hhCChhhCcCHHHHhhChhhcCCC
Confidence            999999999999999999998654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2.7e-32  Score=255.81  Aligned_cols=210  Identities=21%  Similarity=0.228  Sum_probs=168.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||.|+||.||+|.+..+|+.++++.....  .....+.+|+.+++.++||||+++++.+.+   +|+++||  +|++.
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  104 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLT  104 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHH
Confidence            3799999999999999999999885443222  234568899999999999999999998654   8999999  66665


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      ..                   .|+.|||+      +|++||||||+||+++.+   +.++|+|||++....... .....
T Consensus       105 ~~~~~~~l~~~~~~~i~~~l~~al~~LH~------~~i~H~dL~p~Nili~~~---~~~kl~dfg~~~~~~~~~~~~~~~  175 (296)
T cd06655         105 DVVTETCMDEAQIAAVCRECLQALEFLHA------NQVIHRDIKSDNVLLGMD---GSVKLTDFGFCAQITPEQSKRSTM  175 (296)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEccCccchhcccccccCCCc
Confidence            44                   56777777      999999999999999875   899999999987654332 22345


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      .+++.|+||               |+||++|+|++|+.||.+.+.......+...... +...+..+++.+.+||.+||.
T Consensus       176 ~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~  254 (296)
T cd06655         176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTP-ELQNPEKLSPIFRDFLNRCLE  254 (296)
T ss_pred             CCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCc-ccCCcccCCHHHHHHHHHHhh
Confidence            688899999               9999999999999999888776555555433221 112234688999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||+.+++.||||+...
T Consensus       255 ~dp~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         255 MDVEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             cChhhCCCHHHHhhChHhhhcc
Confidence            9999999999999999998655

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG4645|consensus

Probab=100.00  E-value=2.7e-34  Score=294.70  Aligned_cols=207  Identities=19%  Similarity=0.262  Sum_probs=174.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ..||.|.||.||-|.+..||+..| +|.+..     +....+.+|..++..++|||+|+||++-.+   .++.|||  +|
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellA-vKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~G 1319 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLA-VKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGG 1319 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhh-hhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccC
Confidence            379999999999999999998888 454433     223458899999999999999999998543   8999999  77


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      +|-+.                    .++.|||.      +|||||||||.||+++..   |.+|++|||.|..+....  
T Consensus      1320 sLa~ll~~gri~dE~vt~vyt~qll~gla~LH~------~gIVHRDIK~aNI~Ld~~---g~iK~~DFGsa~ki~~~~~~ 1390 (1509)
T KOG4645|consen 1320 SLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHE------HGIVHRDIKPANILLDFN---GLIKYGDFGSAVKIKNNAQT 1390 (1509)
T ss_pred             cHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHh------cCceecCCCccceeeecC---CcEEeecccceeEecCchhc
Confidence            77666                    67888888      999999999999999985   899999999998875432  


Q ss_pred             ---cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         137 ---EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       137 ---~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                         .++.+.||+.||||                  |+||++.||+||+.||.. .+...++..+..|..+..+   ..+|
T Consensus      1391 ~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P---~~ls 1467 (1509)
T KOG4645|consen 1391 MPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIP---ERLS 1467 (1509)
T ss_pred             CCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCc---hhhh
Confidence               35678999999999                  999999999999999975 4566777777777644322   3599


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++.+|||.+||..||++|+++.|+|+|.|-+...
T Consensus      1468 ~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~ 1501 (1509)
T KOG4645|consen 1468 SEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCT 1501 (1509)
T ss_pred             HhHHHHHHHHHhcCchhhhHHHHHHHhhcccccc
Confidence            9999999999999999999999999999986544

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.6e-32  Score=255.65  Aligned_cols=212  Identities=21%  Similarity=0.282  Sum_probs=161.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-Cc--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-RP--   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~g--   78 (379)
                      ..||+|+||.||++.+..+|+.+|+++....   .....+.+|+.++..+. ||||+++++++..   .++++|| .+  
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~~l   89 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDISL   89 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccCCH
Confidence            4899999999999999999999885444322   23356889999999997 9999999997654   6888998 32  


Q ss_pred             -hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          79 -PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        79 -~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       .++..                      .|+.|||+     ..||+||||||+||+++.+   +.++|+|||+++.....
T Consensus        90 ~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~-----~~~i~H~dlkp~Nil~~~~---~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          90 DKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE-----ELKIIHRDVKPSNILLDRN---GNIKLCDFGISGQLVDS  161 (288)
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh-----cCCeeccCCCHHHEEEccC---CcEEEeecchhHHhccC
Confidence             22211                      46777765     2599999999999999875   78999999999765443


Q ss_pred             ccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCC-CCCCcccccCCCH
Q psy6046         136 IEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQ-LDFPDELFEDISP  195 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~-~~~~~~~~~~~s~  195 (379)
                      .......|++.|+||                  |+||++|+|++|++||..... .+....+..+. ...+...+..++.
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (288)
T cd06616         162 IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSP  241 (288)
T ss_pred             CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCH
Confidence            333445678888887                  899999999999999976542 23333333222 2222223345899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++.+||.+||..+|++|||+++++.||||+...
T Consensus       242 ~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~~~  274 (288)
T cd06616         242 SFVNFINLCLIKDESKRPKYKELLEHPFIKDYE  274 (288)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcChhhhchh
Confidence            999999999999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=2.7e-32  Score=256.46  Aligned_cols=207  Identities=19%  Similarity=0.180  Sum_probs=158.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc-----------ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~v   73 (379)
                      ..||+|+||.||+|.+..+|+.||+++.....    ....+.+|+.+++.++||||+++++++..           .|++
T Consensus        18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv   97 (310)
T cd07865          18 AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLV   97 (310)
T ss_pred             EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEE
Confidence            47999999999999999999988854443221    12346789999999999999999987532           4899


Q ss_pred             eeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|| ++.+...                     .|+.|||.      +|++|+||||+||+++..   +.+||+|||++..
T Consensus        98 ~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~i~H~dl~p~nil~~~~---~~~kl~dfg~~~~  168 (310)
T cd07865          98 FEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHR------NKILHRDMKAANILITKD---GILKLADFGLARA  168 (310)
T ss_pred             EcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHEEECCC---CcEEECcCCCccc
Confidence            999 4444332                     56777777      999999999999999875   8999999999976


Q ss_pred             eccCc-----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         132 ILDGI-----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       132 ~~~~~-----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      .....     ......++..|+||                |+|+++|+|++|.+||.+.+.......+......+++..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (310)
T cd07865         169 FSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVW  248 (310)
T ss_pred             ccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhc
Confidence            54322     12234577889999                9999999999999999887766554444332111111100


Q ss_pred             ----------------------------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         191 ----------------------------EDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       191 ----------------------------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                                  ...++.+.+||.+||..||.+|||+++++.||||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         249 PGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             ccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence                                        1236778999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=254.60  Aligned_cols=202  Identities=17%  Similarity=0.122  Sum_probs=158.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc--c---chHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS--Q---GVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~---~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~-   76 (379)
                      +||+|++|.||+|..  +|+.||+++.....  .   .+.+.+|+.+|+.++||||+++++++.+       +++++|| 
T Consensus        27 ~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         27 LIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             EEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            799999999999985  68788854332221  1   2457799999999999999999987543       6899999 


Q ss_pred             -CchhhHH--------------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          77 -RPPVYQA--------------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        77 -~g~l~~~--------------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                       +|+|.+.              .+.+.++++.++|+ .+++||||||+||+++.+   +.+||+|||+++.....  ...
T Consensus       105 ~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~---~~~kl~dfg~~~~~~~~--~~~  179 (283)
T PHA02988        105 TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTEN---YKLKIICHGLEKILSSP--PFK  179 (283)
T ss_pred             CCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCC---CcEEEcccchHhhhccc--ccc
Confidence             7777666              22333333344443 489999999999999985   89999999999765332  234


Q ss_pred             cccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         141 LLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       141 ~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ..|++.|+||                 |+||++|+|++|+.||.+.+..+....+......++.  ...+++.+++|+.+
T Consensus       180 ~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~li~~  257 (283)
T PHA02988        180 NVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKL--PLDCPLEIKCIVEA  257 (283)
T ss_pred             ccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCC--CCcCcHHHHHHHHH
Confidence            5688899999                 9999999999999999998888888877654433321  12578999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy6046         204 ILIKNPMERMTAKEALK  220 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~  220 (379)
                      ||+.||.+|||+.+++.
T Consensus       258 cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        258 CTSHDSIKRPNIKEILY  274 (283)
T ss_pred             HhcCCcccCcCHHHHHH
Confidence            99999999999999986

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=4e-32  Score=250.42  Aligned_cols=204  Identities=21%  Similarity=0.240  Sum_probs=157.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +||+|+||.||+|.+..++..+++ |....   ...+.+.+|+.+++.++||||+++++++.+   +++++|+  +++|.
T Consensus        15 ~lg~g~~g~v~~~~~~~~~~~v~~-k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   93 (268)
T cd06624          15 VLGKGTYGIVYAARDLSTQVRIAI-KEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLS   93 (268)
T ss_pred             EEecCCceEEEEeEecCCCcEEEE-EEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHH
Confidence            899999999999999999888874 43332   234568999999999999999999988664   7899998  45554


Q ss_pred             HH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          82 QA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        82 ~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      ..                       .|+.|||.      .||+||||||+||+++.+  .+.++|+|||++....... .
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~i~h~dl~p~nil~~~~--~~~~~l~dfg~~~~~~~~~~~  165 (268)
T cd06624          94 ALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD------NQIVHRDIKGDNVLVNTY--SGVVKISDFGTSKRLAGINPC  165 (268)
T ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH------CCEeecCCCHHHEEEcCC--CCeEEEecchhheecccCCCc
Confidence            43                       45666666      999999999999999764  3689999999987654322 2


Q ss_pred             ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         138 IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       138 ~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .....|++.|+||                 |+|+++|+|++|.+||...... .....+..  ....+.....+++++.+
T Consensus       166 ~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  243 (268)
T cd06624         166 TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGM--FKIHPEIPESLSAEAKN  243 (268)
T ss_pred             cccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhh--hccCCCCCcccCHHHHH
Confidence            3334578888888                 9999999999999999754322 11111111  11112233468899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      |+.+||..+|.+|||+.+++.||||
T Consensus       244 li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         244 FILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             HHHHHcCCCchhCCCHHHHHhCCCC
Confidence            9999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=3.4e-32  Score=252.37  Aligned_cols=206  Identities=21%  Similarity=0.289  Sum_probs=161.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc-----ceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE-----PLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~-----~~~v~e~-~g   78 (379)
                      ..||+|+||.||+|.+..+++.+|+++....   .......+|+.+++.+. |||++++++++.+     +++++|| .|
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~~   84 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMDM   84 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCCc
Confidence            4689999999999999999998885443322   11233567999999986 9999999987543     7999999 55


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      ++++.                     .|+.|||+      .|++||||+|+||+++.    +.+||+|||++........
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~i~H~dl~p~ni~l~~----~~~kl~dfg~~~~~~~~~~  154 (282)
T cd07831          85 NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHR------NGIFHRDIKPENILIKD----DILKLADFGSCRGIYSKPP  154 (282)
T ss_pred             cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCceecccCHHHEEEcC----CCeEEEecccccccccCCC
Confidence            55544                     56777777      99999999999999987    7899999999987655444


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC------------------C
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ------------------L  183 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~------------------~  183 (379)
                      .....+++.|+||                |+||++|+|++|.+||.+.+..+....+....                  .
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (282)
T cd07831         155 YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNY  234 (282)
T ss_pred             cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccc
Confidence            4556688899999                99999999999999998877665554443211                  1


Q ss_pred             CCCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++.       .....+|.++.++|.+||..+|++|||+++++.||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         235 NFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             cCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            1111       1123568999999999999999999999999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=4.5e-32  Score=248.57  Aligned_cols=209  Identities=20%  Similarity=0.275  Sum_probs=167.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      ...||.|+||.||+|.+..+|..+|+ |....     ...+.+..|+.+++.++||||+++++.+..     .|+++|| 
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~   83 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKSDGKILVW-KEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYC   83 (265)
T ss_pred             eeeeccCCCeEEEEeeecCCCCEEEE-EEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhc
Confidence            35799999999999999999988874 44322     234568899999999999999999886532     6899999 


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       +|+|.+.                        .|+.|||... .++.+++|+||+|+||+++.+   +.+||+|||++..
T Consensus        84 ~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~-~~~~~i~h~dl~p~nili~~~---~~~kl~d~g~~~~  159 (265)
T cd08217          84 EGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRS-DPGNTVLHRDLKPANIFLDAN---NNVKLGDFGLAKI  159 (265)
T ss_pred             cCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCc-cccCcceecCCCHHHEEEecC---CCEEEeccccccc
Confidence             5555433                        4566666100 004999999999999999985   8999999999987


Q ss_pred             eccCcc-ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         132 ILDGIE-IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       132 ~~~~~~-~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ...... .....+++.|+||               |+|+++|+|++|+.||.+.+.......+..+....   ....++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~  236 (265)
T cd08217         160 LGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRR---IPYRYSS  236 (265)
T ss_pred             ccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCC---CccccCH
Confidence            755433 4456789999999               99999999999999999888777777777665432   2236889


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .+.+++.+||..+|++|||+.++++|||+
T Consensus       237 ~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         237 ELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence            99999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.3e-32  Score=254.83  Aligned_cols=214  Identities=22%  Similarity=0.221  Sum_probs=165.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc-------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS-------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      ..||+|+||.||+|.+..+|+.||+++.....       ....+..|+.+++.++||||+++++++.+   .|+++|| +
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFME   85 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEcccC
Confidence            47999999999999999999998854443221       12346789999999999999999998765   7899999 5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|.+.                     .|+.|||+      +||+|+||+|+||+++.+   +.++|+|||++.......
T Consensus        86 ~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~i~H~dl~p~nill~~~---~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841          86 TDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHS------NWILHRDLKPNNLLIASD---GVLKLADFGLARSFGSPN  156 (298)
T ss_pred             CCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecCCChhhEEEcCC---CCEEEccceeeeeccCCC
Confidence            555443                     55666666      999999999999999975   899999999998765432


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC--------------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF--------------  185 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~--------------  185 (379)
                       ......+++.|+||                |+||++|+|++|.+||.+.+..+.+..+.......              
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (298)
T cd07841         157 RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDY  236 (298)
T ss_pred             ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhccccccc
Confidence             22334567778888                99999999999999998877665555543211000              


Q ss_pred             ----------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         186 ----------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       186 ----------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                ....+...+..+.+||.+||..||++|||+.+++.||||++.....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~  292 (298)
T cd07841         237 VEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPT  292 (298)
T ss_pred             ccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCCC
Confidence                      0112245688999999999999999999999999999999876443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-32  Score=249.78  Aligned_cols=208  Identities=25%  Similarity=0.335  Sum_probs=167.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc------chHHHHHHHH-HHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ------GVVIVDEEQL-LKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~------~~~~~~E~~i-l~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..||+|+||.||+|.+..+|+.+| +|......      ...+..|..+ ...++|||++++++.+.+   +|+++||  
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~va-vK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFA-IKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEE-EEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence            358999999999999999998888 45443311      1224445444 445689999999998764   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|...                    .|+.|||+      .|++||||+|+||+++.+   +.++|+|||++.....  
T Consensus        81 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~~~--  149 (260)
T cd05611          81 GGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQ------RGIIHRDIKPENLLIDQT---GHLKLTDFGLSRNGLE--  149 (260)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEECCC---CcEEEeecccceeccc--
Confidence            5555544                    56777777      999999999999999875   8899999999876433  


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                       .....+++.|+||               |+|+++|+|++|.+||.+.+.......+..+...++......+++++.++|
T Consensus       150 -~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  228 (260)
T cd05611         150 -NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLI  228 (260)
T ss_pred             -cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHH
Confidence             2345678889988               999999999999999998888888888877766666555557899999999


Q ss_pred             HHhcccCCCCCC---CHHHHhcCccccCCcc
Q psy6046         202 AKILIKNPMERM---TAKEALKHPWLMNKKQ  229 (379)
Q Consensus       202 ~~~L~~dP~~Rp---t~~e~l~hp~~~~~~~  229 (379)
                      .+||..+|++||   +++|++.||||+...|
T Consensus       229 ~~~l~~~p~~R~~~~~~~~~l~~~~~~~~~~  259 (260)
T cd05611         229 NRLLCMDPAKRLGANGYQEIKSHPFFKSINW  259 (260)
T ss_pred             HHHccCCHHHccCCCcHHHHHcChHhhcCCC
Confidence            999999999999   4589999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=4.4e-32  Score=253.49  Aligned_cols=210  Identities=20%  Similarity=0.213  Sum_probs=159.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCC-CCCcceeeeecCc--------ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE--------PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~-hpnIv~~~~~~~~--------~~~v~   74 (379)
                      ..+||+|+||.||+|.+..+|+.||+++.....    ....+.+|+.+++.+. ||||+++++++..        .|+++
T Consensus         6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~   85 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVF   85 (295)
T ss_pred             eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEe
Confidence            358999999999999999999988854332221    2246888999999996 6999999987543        68999


Q ss_pred             eC-CchhhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          75 NP-RPPVYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        75 e~-~g~l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      || .|++...                         .|+.|||.      +||+||||||+||+++.+  ++.+||+|||+
T Consensus        86 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~i~H~dl~~~nil~~~~--~~~~kl~dfg~  157 (295)
T cd07837          86 EYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK------HGVMHRDLKPQNLLVDKQ--KGLLKIADLGL  157 (295)
T ss_pred             eccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCChHHEEEecC--CCeEEEeeccc
Confidence            99 4333221                         56777777      999999999999999973  37999999999


Q ss_pred             ceeeccCc-cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-------
Q psy6046         129 SRVILDGI-EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-------  184 (379)
Q Consensus       129 a~~~~~~~-~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-------  184 (379)
                      +....... ......+++.|+||                |+|+++|+|++|.+||.+.+..+....+......       
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (295)
T cd07837         158 GRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWP  237 (295)
T ss_pred             ceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCc
Confidence            97653221 22334567889888                9999999999999999887766555444321100       


Q ss_pred             -----------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         185 -----------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       185 -----------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                                       .+....+.+++.+.+||.+||..||.+|||+.+++.||||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         238 GVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             chhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence                             00111245789999999999999999999999999999984

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.9e-32  Score=261.18  Aligned_cols=216  Identities=21%  Similarity=0.279  Sum_probs=166.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC-------cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-------EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~-------~~~~v~e~-   76 (379)
                      +.||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+|+.++||||+++++++.       .+|+++|| 
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~   90 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLM   90 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehh
Confidence            5899999999999999999999885443322    22356788999999999999999888653       26899999 


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|.+...                    .|+.|||.      +||+||||||+||+++.+   +.+||+|||++.......
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~Nil~~~~---~~~kl~dfg~~~~~~~~~  161 (334)
T cd07855          91 ESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHS------ANVIHRDLKPSNLLVNED---CELRIGDFGMARGLSSSP  161 (334)
T ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CcEEecccccceeecccC
Confidence            5444433                    56777777      999999999999999985   899999999997764322


Q ss_pred             -----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC------------
Q psy6046         137 -----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL------------  183 (379)
Q Consensus       137 -----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~------------  183 (379)
                           ......|+..|+||                |+||++|+|++|++||.+.+....+..+.....            
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  241 (334)
T cd07855         162 TEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGS  241 (334)
T ss_pred             cCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhch
Confidence                 12345788899999                999999999999999987665443333222100            


Q ss_pred             --------------CCC-cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccc
Q psy6046         184 --------------DFP-DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       184 --------------~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~  233 (379)
                                    ..+ ....+..++++.++|.+||+.+|.+|||+.+++.||||.+.......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~~~  306 (334)
T cd07855         242 DRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPDDE  306 (334)
T ss_pred             hhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCCccc
Confidence                          000 11224578999999999999999999999999999999877654443

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.7e-32  Score=253.30  Aligned_cols=208  Identities=22%  Similarity=0.291  Sum_probs=158.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHH-HHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQL-LKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~i-l~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||+|+||.||+|++..+|+.||++.....   .....+..|+.+ ++.++||||+++++++..   .|+++|| .|.+
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~~l   86 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMDTSL   86 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhcccH
Confidence            4799999999999999999999995433222   122345666664 777889999999988654   8999999 4443


Q ss_pred             hHH------------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          81 YQA------------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        81 ~~~------------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      ...                        .|+.|||+      + +++||||||+||+++.+   +.+||+|||++......
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~~i~h~dlkp~nil~~~~---~~~kl~dfg~~~~~~~~  157 (283)
T cd06617          87 DKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHS------KLSVIHRDVKPSNVLINRN---GQVKLCDFGISGYLVDS  157 (283)
T ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh------cCCeecCCCCHHHEEECCC---CCEEEeecccccccccc
Confidence            222                        45666666      7 99999999999999875   89999999999876443


Q ss_pred             ccccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCC-ChHHHHHHHHhC-CCCCCcccccCCC
Q psy6046         136 IEIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGE-TDSETFRNISKA-QLDFPDELFEDIS  194 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~-~~~~~~~~i~~~-~~~~~~~~~~~~s  194 (379)
                      .......|+..|+||                   |+||++|+|++|+.||... ...+.+..+..+ ...++.   ..+|
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  234 (283)
T cd06617         158 VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPA---EKFS  234 (283)
T ss_pred             cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCc---cccC
Confidence            323335677788888                   8999999999999999642 333334343333 222222   2578


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .++.+||.+||..+|.+|||+.+++.||||....
T Consensus       235 ~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         235 PEFQDFVNKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcCchhhhcc
Confidence            9999999999999999999999999999998754

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=4.5e-32  Score=249.89  Aligned_cols=207  Identities=22%  Similarity=0.235  Sum_probs=160.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~   74 (379)
                      ...+||+|+||.||+|.+..+|..|++++....       .....+.+|+.+++.++||||+++++++.+     +++++
T Consensus         6 ~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~   85 (266)
T cd06651           6 RGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFM   85 (266)
T ss_pred             ccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEE
Confidence            346899999999999999999999886443221       123458889999999999999999987542     68899


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      |+  ++.|...                    .|+.|||.      .||+||||+|+||+++.+   +.++|+|||++...
T Consensus        86 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~------~~i~H~~l~p~nil~~~~---~~~~l~dfg~~~~~  156 (266)
T cd06651          86 EYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHS------NMIVHRDIKGANILRDSA---GNVKLGDFGASKRL  156 (266)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHEEECCC---CCEEEccCCCcccc
Confidence            99  5555544                    56677777      999999999999999875   78999999998764


Q ss_pred             ccC----ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         133 LDG----IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       133 ~~~----~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ...    .......++..|+||               |+||++|+|++|+.||......+....+.....  .+.....+
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~  234 (266)
T cd06651         157 QTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPT--NPQLPSHI  234 (266)
T ss_pred             ccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCC--CCCCchhc
Confidence            321    112335588899999               999999999999999987765554444433221  11222357


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ++.+++++ +||..+|++|||++|+++||||+
T Consensus       235 ~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         235 SEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             CHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence            88999999 67778999999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=3.5e-32  Score=254.16  Aligned_cols=207  Identities=20%  Similarity=0.209  Sum_probs=161.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--c--chHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--Q--GVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~--~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-~g   78 (379)
                      ..||+|+||.||+|.+..+++.+|+++.....  +  ...+.+|+.+++.++||||+++++++.     .+|+++|| .+
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~~   90 (293)
T cd07843          11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEH   90 (293)
T ss_pred             hhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcCc
Confidence            58999999999999999999888854443221  1  234678999999999999999988643     38999999 44


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-c
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-I  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~  136 (379)
                      .+...                     .|+.|||.      .|++||||||+||+++.+   +.++|+|||++...... .
T Consensus        91 ~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~i~H~dl~p~nili~~~---~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          91 DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHD------NWILHRDLKTSNLLLNNR---GILKICDFGLAREYGSPLK  161 (293)
T ss_pred             CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCCHHHEEECCC---CcEEEeecCceeeccCCcc
Confidence            44333                     66788887      999999999999999985   89999999999876543 2


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC---------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF---------------  185 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~---------------  185 (379)
                      ......+++.|+||                |+|+++|+|++|.+||.+.+..+...++.......               
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAK  241 (293)
T ss_pred             ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhc
Confidence            33445678889999                99999999999999998877666555443211000               


Q ss_pred             -----------CcccccC--CCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         186 -----------PDELFED--ISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       186 -----------~~~~~~~--~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                 ....++.  +++.+.++|.+||..+|++|||+.|++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         242 KKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             ccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence                       0011122  58899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.6e-32  Score=252.30  Aligned_cols=209  Identities=22%  Similarity=0.193  Sum_probs=167.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||.|+||.||+|.+..++..+| +|....   ...+.+.+|+.+++.++||||+++++.+.+   .|+++||  +|.+
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~-iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAA-AKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGAL   89 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEE-EEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcH
Confidence            369999999999999988888877 454433   234568899999999999999999998664   8999999  5555


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|+.|||+      .||+|+||||+||+++.+   +.++|+|||++....... ..
T Consensus        90 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~------~~i~h~dl~p~nili~~~---~~~~l~d~g~~~~~~~~~~~~  160 (280)
T cd06611          90 DSIMLELERGLTEPQIRYVCRQMLEALNFLHS------HKVIHRDLKAGNILLTLD---GDVKLADFGVSAKNKSTLQKR  160 (280)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCChhhEEECCC---CCEEEccCccchhhccccccc
Confidence            433                     55677777      999999999999999875   899999999986543322 22


Q ss_pred             cccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         139 RELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ....+++.|+||                    |+|+++|+|++|++||.+.+.......+..+..+.. .....++.++.
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (280)
T cd06611         161 DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTL-DQPSKWSSSFN  239 (280)
T ss_pred             ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCc-CCcccCCHHHH
Confidence            345678888887                    999999999999999988877777766665543211 11235789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++|.+||..+|.+||++.++++||||....
T Consensus       240 ~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (280)
T cd06611         240 DFLKSCLVKDPDDRPTAAELLKHPFVSDQS  269 (280)
T ss_pred             HHHHHHhccChhhCcCHHHHhcChhhcccc
Confidence            999999999999999999999999997653

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.8e-32  Score=247.73  Aligned_cols=206  Identities=19%  Similarity=0.236  Sum_probs=164.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +++||+|+||.||+|.+..+++.++++......       ....+.+|+.+++.++||||+++++++.+   +|+++|| 
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELV   84 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEec
Confidence            468999999999999999889888853322211       23568899999999999999999998754   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       ++++.+.                    .|+.|||+      .||+|+||+|+||+++.+   +.+||+|||++......
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~~~ni~~~~~---~~~kl~d~~~~~~~~~~  155 (258)
T cd06632          85 PGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHD------RNTVHRDIKGANILVDTN---GVVKLADFGMAKQVVEF  155 (258)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEccCccceecccc
Confidence             5565544                    56667776      999999999999999875   89999999999876544


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......|++.|+||                |+|+++|+|++|+.||......+....+.... . .+.....+++.+.+
T Consensus       156 ~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  233 (258)
T cd06632         156 SFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSK-E-LPPIPDHLSDEAKD  233 (258)
T ss_pred             ccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcc-c-CCCcCCCcCHHHHH
Confidence            434556688889888                89999999999999998766555554444311 1 12233468899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++.+||..+|.+|||+.+++.|||+
T Consensus       234 li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         234 FILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             HHHHHhhcCcccCcCHHHHhcCCCC
Confidence            9999999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=3.2e-32  Score=249.53  Aligned_cols=207  Identities=28%  Similarity=0.389  Sum_probs=170.0

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ||+|+||.||+|.+..+|+.++ +|....      .....+.+|+++++.++||||+++++.+.+   +|+++|+  +|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYA-IKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEE-EEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            6999999999999999998888 454433      223568899999999999999999887654   7999999  556


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---  136 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---  136 (379)
                      |.+.                    .|+.|||+      .|++||||+|+||+++.+   +.++|+|||++.......   
T Consensus        80 L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~------~~i~H~di~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~  150 (265)
T cd05579          80 LASLLENVGSLDEDVARIYIAEIVLALEYLHS------NGIIHRDLKPDNILIDSN---GHLKLTDFGLSKVGLVRRQIN  150 (265)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------cCeecCCCCHHHeEEcCC---CCEEEEecccchhcccCcccc
Confidence            6544                    56677777      999999999999999986   899999999987653321   


Q ss_pred             ------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         137 ------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       137 ------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                            ......++..|+||               |+|+++|+|++|..||......+....+..+...++...  .+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  228 (265)
T cd05579         151 LNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDV--EVSD  228 (265)
T ss_pred             cccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccc--cCCH
Confidence                  12335678889999               999999999999999998888888888877666555431  3589


Q ss_pred             HHHHHHHHhcccCCCCCCCH---HHHhcCccccCCcc
Q psy6046         196 EAKDFIAKILIKNPMERMTA---KEALKHPWLMNKKQ  229 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~---~e~l~hp~~~~~~~  229 (379)
                      .+.+++.+||..+|++|||+   .++|+||||....|
T Consensus       229 ~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         229 EAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             HHHHHHHHHhcCCHhhcCCCccHHHHhcCccccCCCC
Confidence            99999999999999999999   99999999986543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=5.1e-32  Score=254.82  Aligned_cols=215  Identities=21%  Similarity=0.314  Sum_probs=172.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ...||+|+||.||+|.+..+++.|+++.....     .....+.+|+.+++.++||||+++++.+.+   +|+++||  +
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEG   85 (305)
T ss_pred             eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            35899999999999999999998885433221     223467899999999999999999987654   7999999  5


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|...                    .|+.|||+      .|++||||||+||+++..   +.++|+|||+++...... 
T Consensus        86 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~NIll~~~---~~~~l~dfg~~~~~~~~~~  156 (305)
T cd05609          86 GDCATLLKNIGALPVDMARMYFAETVLALEYLHN------YGIVHRDLKPDNLLITSM---GHIKLTDFGLSKIGLMSLT  156 (305)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCchHHEEECCC---CCEEEeeCCCccccCcCcc
Confidence            565544                    56777777      999999999999999875   899999999986421100 


Q ss_pred             ---------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC
Q psy6046         137 ---------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP  186 (379)
Q Consensus       137 ---------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~  186 (379)
                                     ......++..|+||               |+||++|+|++|..||.+.+..+....+..+....|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  236 (305)
T cd05609         157 TNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWP  236 (305)
T ss_pred             ccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCC
Confidence                           01124577889999               999999999999999999888888888877665554


Q ss_pred             cccccCCCHHHHHHHHHhcccCCCCCCC---HHHHhcCccccCCccccc
Q psy6046         187 DELFEDISPEAKDFIAKILIKNPMERMT---AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       187 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt---~~e~l~hp~~~~~~~~~~  232 (379)
                      ... ..+++++.++|.+||..||.+||+   +.++++||||....+...
T Consensus       237 ~~~-~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~~~~~  284 (305)
T cd05609         237 EGD-EALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLDWNGL  284 (305)
T ss_pred             Ccc-ccCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCCCHHHH
Confidence            432 257999999999999999999997   799999999987765543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=7.4e-32  Score=249.06  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=164.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----c-------cchHHHHHHHHHHhCCCCCcceeeeecCc---c
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----S-------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---P   70 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~-------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~   70 (379)
                      +..+.||+|+||.||+|.+..+|+.+|++.....     .       ..+.+.+|+.+++.++|||++++++++..   +
T Consensus         4 ~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   83 (272)
T cd06629           4 VKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYL   83 (272)
T ss_pred             eecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCce
Confidence            4566899999999999999999988885333211     0       12357889999999999999999998665   7


Q ss_pred             eEEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          71 LLGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        71 ~~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      ++++||  +|+|.+.                    .|+.|||+      .|++||||+|+||+++.+   +.++|+|||+
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~~~nil~~~~---~~~~l~d~~~  154 (272)
T cd06629          84 SIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHS------KGILHRDLKADNLLVDAD---GICKISDFGI  154 (272)
T ss_pred             EEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhh------CCeeecCCChhhEEEcCC---CeEEEeeccc
Confidence            899999  6666554                    45666666      999999999999999875   8999999999


Q ss_pred             ceeeccCc---cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC--CCCCC
Q psy6046         129 SRVILDGI---EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA--QLDFP  186 (379)
Q Consensus       129 a~~~~~~~---~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~--~~~~~  186 (379)
                      ++......   ......|+..|+||                 |+|+++|+|++|..||......+....+...  ...++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (272)
T cd06629         155 SKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIP  234 (272)
T ss_pred             cccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCC
Confidence            97643221   12334577788888                 9999999999999999766554444443322  23344


Q ss_pred             cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       187 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ......++..+.++|.+||..+|.+|||++++++||||
T Consensus       235 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         235 PDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             ccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            44455789999999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0197|consensus

Probab=100.00  E-value=2.8e-32  Score=259.74  Aligned_cols=197  Identities=18%  Similarity=0.214  Sum_probs=162.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      -||+|-||+||.|....+. .|| +|.+..  -..+.+.+|+.+|++|+|++||++|+++..   +||||||  .|+|.+
T Consensus       213 ~LG~G~FG~V~~g~~~~~~-~va-vk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~  290 (468)
T KOG0197|consen  213 ELGSGQFGEVWLGKWNGST-KVA-VKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLD  290 (468)
T ss_pred             HhcCCccceEEEEEEcCCC-ccc-ceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHH
Confidence            6999999999999965542 344 343333  223678899999999999999999999876   8999999  788877


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      +                      .++.||.+      +++|||||-..|||++++   ..+||+|||+|+...++.....
T Consensus       291 yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes------~~~IHRDLAARNiLV~~~---~~vKIsDFGLAr~~~d~~Y~~~  361 (468)
T KOG0197|consen  291 YLRTREGGLLNLPQLLDFAAQIAEGMAYLES------KNYIHRDLAARNILVDED---LVVKISDFGLARLIGDDEYTAS  361 (468)
T ss_pred             HhhhcCCCccchHHHHHHHHHHHHHHHHHHh------CCccchhhhhhheeeccC---ceEEEcccccccccCCCceeec
Confidence            7                      67888888      999999999999999986   8999999999995544433222


Q ss_pred             cc--cCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         141 LL--GTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       141 ~~--gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      .-  -...|.||               |+||+|+||.| |+.||.+.+..+++..+.+|. .+|.+  ..+|+++-+++.
T Consensus       362 ~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~Gy-Rlp~P--~~CP~~vY~lM~  438 (468)
T KOG0197|consen  362 EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGY-RLPRP--EGCPDEVYELMK  438 (468)
T ss_pred             CCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccC-cCCCC--CCCCHHHHHHHH
Confidence            11  23368999               99999999998 999999999999999999885 33432  379999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      .||..+|++|||++.+..
T Consensus       439 ~CW~~~P~~RPtF~~L~~  456 (468)
T KOG0197|consen  439 SCWHEDPEDRPTFETLRE  456 (468)
T ss_pred             HHhhCCcccCCCHHHHHH
Confidence            999999999999986654

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=9.5e-32  Score=245.96  Aligned_cols=204  Identities=22%  Similarity=0.247  Sum_probs=169.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .+||.|+||.||.+++..+++.+++++...    ......+.+|+.+++.++||||+++++++.+   +++++||  +|+
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (256)
T cd08221           6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGT   85 (256)
T ss_pred             eEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCc
Confidence            589999999999999999999888544322    1233568899999999999999999998765   7889999  566


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |.+.                      .++.|||+      .|++||||+|+||+++.+   +.+||+|||++....... 
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~h~dl~p~ni~~~~~---~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          86 LYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK------AGILHRDIKTLNIFLTKA---GLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh------CCccccCCChHhEEEeCC---CCEEECcCcceEEcccccc
Confidence            6654                      45666666      999999999999999986   789999999998764433 


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ......|++.|+||               |+|+++|+|++|..||.+.+..+....+..+......   ..++.++.++|
T Consensus       157 ~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i  233 (256)
T cd08221         157 MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVV---SVYSSELISLV  233 (256)
T ss_pred             cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCc---cccCHHHHHHH
Confidence            33456789999999               9999999999999999998888888888776544322   46799999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .+||..+|.+|||+.++++|||+
T Consensus       234 ~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         234 HSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             HHHcccCcccCCCHHHHhhCcCC
Confidence            99999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=5.4e-32  Score=247.30  Aligned_cols=206  Identities=24%  Similarity=0.257  Sum_probs=164.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~   83 (379)
                      ..||+|+||.||+|.+..+++.++++........+.+.+|+++++.++||||+++++.+.+   +|+++|+  ++.|.+.
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~   88 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDI   88 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHH
Confidence            4899999999999999998888885443333336779999999999999999999987654   7899999  4555443


Q ss_pred             ---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          84 ---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        84 ---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                                           .|+.|||+      .|++||||+|+||+++.+   +.++|+|||++....... .....
T Consensus        89 l~~~~~~l~~~~~~~~~~~l~~~l~~lh~------~~i~H~dl~~~ni~~~~~---~~~~l~dfg~~~~~~~~~~~~~~~  159 (256)
T cd06612          89 MKITNKTLTEEEIAAILYQTLKGLEYLHS------NKKIHRDIKAGNILLNEE---GQAKLADFGVSGQLTDTMAKRNTV  159 (256)
T ss_pred             HHhCccCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCcceEEECCC---CcEEEcccccchhcccCccccccc
Confidence                                 56777777      999999999999999985   789999999998765433 23345


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      .++..|+||               |+|+++|+|++|+.||...+.......+....... ......++..+.++|.+||.
T Consensus       160 ~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~  238 (256)
T cd06612         160 IGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPT-LSDPEKWSPEFNDFVKKCLV  238 (256)
T ss_pred             cCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCC-CCchhhcCHHHHHHHHHHHh
Confidence            588899999               99999999999999998776655444433322111 11123578899999999999


Q ss_pred             cCCCCCCCHHHHhcCccc
Q psy6046         207 KNPMERMTAKEALKHPWL  224 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~  224 (379)
                      .||.+|||+.+++.||||
T Consensus       239 ~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         239 KDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             cChhhCcCHHHHhcCCCC
Confidence            999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=3.1e-32  Score=254.91  Aligned_cols=210  Identities=19%  Similarity=0.259  Sum_probs=167.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.+..++..+|+++....  ...+.+.+|+.+++.++||||+++++.+..   .|+++||  ++.+.
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~  107 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALT  107 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHH
Confidence            3799999999999999999988885443222  334568899999999999999998877543   8999999  55554


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      ..                   .|+.|||+      +||+||||||+||+++.+   +.++|+|||++....... .....
T Consensus       108 ~~~~~~~l~~~~~~~~~~qi~~~l~~LH~------~~ivH~dlkp~Nill~~~---~~~kL~dfg~~~~~~~~~~~~~~~  178 (292)
T cd06658         108 DIVTHTRMNEEQIATVCLSVLRALSYLHN------QGVIHRDIKSDSILLTSD---GRIKLSDFGFCAQVSKEVPKRKSL  178 (292)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecCCCHHHEEEcCC---CCEEEccCcchhhcccccccCcee
Confidence            43                   56777777      999999999999999875   899999999987653222 23446


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      .|++.|+||               |+|+++|+|++|+.||.+.+....+..+....... .......+..+.+++.+||.
T Consensus       179 ~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~  257 (292)
T cd06658         179 VGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPR-VKDSHKVSSVLRGFLDLMLV  257 (292)
T ss_pred             ecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCc-cccccccCHHHHHHHHHHcc
Confidence            789999999               99999999999999998887766666554432111 11123578999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||++++++||||....
T Consensus       258 ~~P~~Rpt~~~il~~~~~~~~~  279 (292)
T cd06658         258 REPSQRATAQELLQHPFLKLAG  279 (292)
T ss_pred             CChhHCcCHHHHhhChhhhccC
Confidence            9999999999999999998655

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=3.6e-32  Score=250.47  Aligned_cols=206  Identities=19%  Similarity=0.191  Sum_probs=161.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ...||+|+||.||+|++..+|+.+|+ |....   .....+.+|+.+++.++||||+++++.+..   +|+++||  +|.
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~~~~~ai-k~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~   92 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHTGELAAV-KIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGS   92 (267)
T ss_pred             hheeecCCCeEEEEEEECCCCeEEEE-EEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCc
Confidence            44899999999999999999988885 44332   233467899999999999999999987653   7899999  566


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      |.+.                    .|+.|||+      .||+||||||+||+++.+   +.++|+|||++....... ..
T Consensus        93 L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~nill~~~---~~~~l~dfg~~~~~~~~~~~~  163 (267)
T cd06646          93 LQDIYHVTGPLSELQIAYVCRETLQGLAYLHS------KGKMHRDIKGANILLTDN---GDVKLADFGVAAKITATIAKR  163 (267)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEECCC---CCEEECcCccceeeccccccc
Confidence            6543                    56677777      999999999999999875   789999999998764322 22


Q ss_pred             cccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-cccCCCHHHHH
Q psy6046         139 RELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-LFEDISPEAKD  199 (379)
Q Consensus       139 ~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~  199 (379)
                      ....|++.|+||                  |+||++|+|++|..||......+....+.......+.. ....++..+.+
T Consensus       164 ~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (267)
T cd06646         164 KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHN  243 (267)
T ss_pred             CccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHH
Confidence            345688889988                  89999999999999997655444333333332222211 11357899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      ||.+||..+|++|||++++++|+|
T Consensus       244 li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         244 FVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             HHHHHhhCChhhCcCHHHHhcCCC
Confidence            999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=7.7e-32  Score=246.56  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=167.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|+||.||++++..+|+.+|+++...    ......+.+|+.+++.++||||+++++.+.+   .|+++||  +|
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGG   84 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCC
Confidence            3589999999999999999999888544322    1233568999999999999999999998764   8899999  55


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      ++.+.                      .|+.|||+      +|++|+||+|+||+++.+   +.++|+|||++.......
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~h~~l~~~nil~~~~---~~~~l~d~~~~~~~~~~~  155 (256)
T cd08218          85 DLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD------RKILHRDIKSQNIFLTKD---GTIKLGDFGIARVLNSTV  155 (256)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEEcCC---CCEEEeeccceeecCcch
Confidence            55543                      45666666      999999999999999875   789999999998764432


Q ss_pred             c-ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 E-IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 ~-~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      . .....|++.|+||               |+||++|+|++|+.||...+..+....+..+.....   ...++.++.++
T Consensus       156 ~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l  232 (256)
T cd08218         156 ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPV---SSHYSYDLRNL  232 (256)
T ss_pred             hhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCC---cccCCHHHHHH
Confidence            2 2334688889999               999999999999999998888877777766654322   23679999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      |.+||..+|.+||++.++++||||
T Consensus       233 i~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         233 VSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             HHHHhhCChhhCcCHHHHhhCcCC
Confidence            999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-32  Score=252.06  Aligned_cols=207  Identities=22%  Similarity=0.256  Sum_probs=155.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|.++.+++.||+ |....    .....+.+|+.+++.++||||+++++++.+   .|+++|| .++
T Consensus        10 ~~~lg~g~~~~vy~~~~~~~~~~~~i-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (291)
T cd07844          10 LDKLGEGSYATVYKGRSKLTGQLVAL-KEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDTD   88 (291)
T ss_pred             EEEEeecCCeEEEEEEEcCCCcEEEE-EEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCCC
Confidence            35899999999999999999988884 44332    122456789999999999999999998764   8999999 545


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      +.+.                     .|+.|||+      .||+||||||+||+++..   +.+||+|||+++...... .
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~------~~i~H~dl~p~nil~~~~---~~~kl~dfg~~~~~~~~~~~  159 (291)
T cd07844          89 LKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQ------RRVLHRDLKPQNLLISER---GELKLADFGLARAKSVPSKT  159 (291)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecccCCHHHEEEcCC---CCEEECccccccccCCCCcc
Confidence            5443                     56777777      999999999999999885   889999999987542211 1


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCC----------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLD----------------  184 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~----------------  184 (379)
                      .....+++.|+||                |+|+++|+|++|++||.+.. ..+.+..+......                
T Consensus       160 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (291)
T cd07844         160 YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFK  239 (291)
T ss_pred             ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccc
Confidence            2223467778888                99999999999999997655 33333322211000                


Q ss_pred             ---C----C---cccccCCC--HHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 ---F----P---DELFEDIS--PEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ---~----~---~~~~~~~s--~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                         +    +   ......++  .++.+++.+||..+|++|||+.+++.||||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         240 PYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             cccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence               0    0   01112344  889999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.8e-32  Score=260.00  Aligned_cols=213  Identities=25%  Similarity=0.287  Sum_probs=165.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e   75 (379)
                      ..||+|+||.||+|++..+|+.+|+++....    .....+.+|+.+++.++||||+++++++..         +|+++|
T Consensus        21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e  100 (342)
T cd07879          21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMP  100 (342)
T ss_pred             EEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEec
Confidence            4899999999999999999999886544322    113457899999999999999999887542         589999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      + .+.+...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....  
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~i~H~dlkp~NIll~~~---~~~kL~dfg~~~~~~~--  169 (342)
T cd07879         101 YMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHS------AGIIHRDLKPGNLAVNED---CELKILDFGLARHADA--  169 (342)
T ss_pred             ccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEeeCCCCcCCCC--
Confidence            8 3333221                  56777777      999999999999999985   8999999999876422  


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-----------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-----------------  183 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-----------------  183 (379)
                      ......+++.|+||                |+||++|+|++|+.||.+.+....+..+.....                 
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T cd07879         170 EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKS  249 (342)
T ss_pred             CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHH
Confidence            23345678889999                999999999999999998776555544333110                 


Q ss_pred             ------CCCc----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         184 ------DFPD----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       184 ------~~~~----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                            ..+.    ..++..++.+.+||.+||..||.+|||+++++.||||....+...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~  308 (342)
T cd07879         250 YIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADE  308 (342)
T ss_pred             HHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccc
Confidence                  0010    112357889999999999999999999999999999998875443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=5e-32  Score=254.11  Aligned_cols=208  Identities=20%  Similarity=0.311  Sum_probs=168.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      .||+|+||.||+|.+..+++.+|+ |....   .....+.+|+.+++.++||||+++++.+..   +|+++||  +|.+.
T Consensus        28 ~ig~g~~g~v~~~~~~~~~~~v~i-K~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~  106 (297)
T cd06659          28 KIGEGSTGIVCIAREKHSGRQVAV-KMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALT  106 (297)
T ss_pred             hcCCCCceeEEEEEEcCCCCEEEE-EEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHH
Confidence            799999999999999999988885 44332   334568899999999999999999987543   8999999  55554


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      ..                   .|+.|||+      .|++||||||+||+++.+   +.+||+|||++....... .....
T Consensus       107 ~~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~ivH~dl~p~Nill~~~---~~~kL~dfg~~~~~~~~~~~~~~~  177 (297)
T cd06659         107 DIVSQTRLNEEQIATVCESVLQALCYLHS------QGVIHRDIKSDSILLTLD---GRVKLSDFGFCAQISKDVPKRKSL  177 (297)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHeEEccC---CcEEEeechhHhhcccccccccce
Confidence            44                   45666666      999999999999999875   899999999987654322 23446


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +|++.|+||               |+||++|+|++|+.||...+..+....+....... ...+..+++.+.++|.+||.
T Consensus       178 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~l~  256 (297)
T cd06659         178 VGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPK-LKNAHKISPVLRDFLERMLT  256 (297)
T ss_pred             ecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCC-ccccCCCCHHHHHHHHHHhc
Confidence            789999999               99999999999999998887777776665443222 22234678999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+|.+||++.+++.||||.+..
T Consensus       257 ~~P~~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         257 REPQERATAQELLDHPFLLQTG  278 (297)
T ss_pred             CCcccCcCHHHHhhChhhccCC
Confidence            9999999999999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG1006|consensus

Probab=100.00  E-value=5.4e-34  Score=249.17  Aligned_cols=214  Identities=20%  Similarity=0.210  Sum_probs=173.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHH-HHhCCCCCcceeeeecCc---ceEEeeC----Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQL-LKLIKVEPIEKYYSLDPE---PLLGLNP----RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~i-l~~l~hpnIv~~~~~~~~---~~~v~e~----~g   78 (379)
                      .||.|+||+|++..++.+|+.+|++++...   .+..+++.|.+. ++.=+.||||++|++.-.   -|+.||+    --
T Consensus        71 ~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~SlD  150 (361)
T KOG1006|consen   71 EIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDISLD  150 (361)
T ss_pred             HhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhhhHH
Confidence            799999999999999999999997665443   344668888875 666669999999998443   7899999    22


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .||.+                      .|+.||..     ...|+|||+||+|||++..   |.+||||||++..+.++-
T Consensus       151 klYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~-----~lkiIHRDvKPSNILldr~---G~vKLCDFGIcGqLv~Si  222 (361)
T KOG1006|consen  151 KLYKRVYSVQKSRIPENILGHITVATVDALDYLKE-----ELKIIHRDVKPSNILLDRH---GDVKLCDFGICGQLVDSI  222 (361)
T ss_pred             HHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH-----HhhhhhccCChhheEEecC---CCEeeecccchHhHHHHH
Confidence            33333                      78999986     4899999999999999986   999999999998876654


Q ss_pred             cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCc--ccccCCCHH
Q psy6046         137 EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPD--ELFEDISPE  196 (379)
Q Consensus       137 ~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~--~~~~~~s~~  196 (379)
                      ..+...|-..||||                 |||+++||+.||..|+.+.+ ..+++..+..|..+...  ...-..|..
T Consensus       223 AkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~  302 (361)
T KOG1006|consen  223 AKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFS  302 (361)
T ss_pred             HhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHH
Confidence            55566788999999                 99999999999999998754 45777777777654321  112357999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      +..||..||.+|-.+||+..+++++||++......
T Consensus       303 ~~~fintCl~Kd~~~Rpky~~Lk~~~fyr~y~~~~  337 (361)
T KOG1006|consen  303 MVRFINTCLIKDRSDRPKYDDLKKFPFYRMYAVEG  337 (361)
T ss_pred             HHHHHHHHhhcccccCcchhhhhcCchhhhhhhcC
Confidence            99999999999999999999999999998765443

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=8.9e-32  Score=247.55  Aligned_cols=206  Identities=20%  Similarity=0.240  Sum_probs=161.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV---------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      ...+||+|+||.||+|.+ .+|+.+|+ |....         .....+.+|+++++.++||||+++++++.+   +|+++
T Consensus         4 ~~~~ig~g~~~~v~~~~~-~~~~~~av-k~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           4 KGEVLGKGAYGTVYCGLT-NQGQLIAV-KQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccceEeccCCeEEEEEEE-cCCCeEEE-EEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            346899999999999986 46777774 43322         112458899999999999999999998765   79999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +|.|.+.                    .|+.|||.      .||+|+||+|+||+++++   +.++|+|||++...
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~  152 (265)
T cd06631          82 EFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHN------NCVVHRDIKGNNVMLMPN---GIIKLIDFGCARRL  152 (265)
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCcCHHhEEECCC---CeEEeccchhhHhh
Confidence            99  5666554                    45677776      999999999999999875   89999999998754


Q ss_pred             cc-------CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         133 LD-------GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       133 ~~-------~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ..       ........|+..|+||               |+|+++|+|++|..||...+.......+.......+ ...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~  231 (265)
T cd06631         153 AWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMP-RLP  231 (265)
T ss_pred             hhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCC-CCC
Confidence            21       1122345688899999               999999999999999987665544444443322222 223


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..++.++.++|.+||..+|.+|||+.+++.||||
T Consensus       232 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         232 DSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             CCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            4689999999999999999999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-31  Score=256.79  Aligned_cols=211  Identities=22%  Similarity=0.235  Sum_probs=164.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|..||+++....    .....+.+|+.+|+.++||||+++++++..         +|+++|
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  100 (343)
T cd07880          21 KQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMP  100 (343)
T ss_pred             EEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEe
Confidence            4799999999999999999999885443221    113458899999999999999999987542         589999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      + ++.+...                   .|+.|||.      .||+||||||+||+++.+   +.++|+|||++......
T Consensus       101 ~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~------~gi~H~dlkp~Nill~~~---~~~kl~dfg~~~~~~~~  171 (343)
T cd07880         101 FMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHA------AGIIHRDLKPGNLAVNED---CELKILDFGLARQTDSE  171 (343)
T ss_pred             cCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEeecccccccccC
Confidence            9 5544333                   56677776      999999999999999975   88999999999765332


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-------------  186 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-------------  186 (379)
                        .....+++.|+||                |+|+++|+|++|.+||.+.+.......+.......+             
T Consensus       172 --~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07880         172 --MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAK  249 (343)
T ss_pred             --ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHH
Confidence              2345678889888                999999999999999987766554444333211111             


Q ss_pred             --------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         187 --------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       187 --------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                    ...++.+++.+.++|.+||..||++|||+.+++.||||+.....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~  307 (343)
T cd07880         250 NYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDP  307 (343)
T ss_pred             HHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCc
Confidence                          11224678899999999999999999999999999999877543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=7.5e-32  Score=247.72  Aligned_cols=208  Identities=21%  Similarity=0.237  Sum_probs=164.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ....||.|+||+||+|.+..++..++ +|....    .....+.+|+.+++.++||||+++++.+..   +|+++|+  +
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~-ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~   83 (267)
T cd06610           5 LIEVIGVGATAVVYAAICLPNNEKVA-IKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSG   83 (267)
T ss_pred             eeeeecCCCCeEEEEEEEcCCCcEEE-EEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCC
Confidence            34579999999999999988888877 454432    234568999999999999999999987554   8899999  4


Q ss_pred             chhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          78 PPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        78 g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +.+.+.                       .|+.+||+      .|++||||+|+||+++++   +.++|+|||++.....
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~------~~i~h~~l~p~ni~~~~~---~~~~l~df~~~~~~~~  154 (267)
T cd06610          84 GSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS------NGQIHRDIKAGNILLGED---GSVKIADFGVSASLAD  154 (267)
T ss_pred             CcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHhEEEcCC---CCEEEcccchHHHhcc
Confidence            444433                       45566666      999999999999999985   7899999999977654


Q ss_pred             Ccc-----ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-CCcc-ccc
Q psy6046         135 GIE-----IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-FPDE-LFE  191 (379)
Q Consensus       135 ~~~-----~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-~~~~-~~~  191 (379)
                      ...     .....|+..|+||                |+|+++|+|++|+.||...+....+..+...... ++.. .+.
T Consensus       155 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (267)
T cd06610         155 GGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYK  234 (267)
T ss_pred             CccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccc
Confidence            322     1335688899999                9999999999999999887766655555444222 1111 123


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .+++.+.+++.+||..||++|||+.+++.||||
T Consensus       235 ~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         235 KYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             cccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence            678999999999999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=5.6e-32  Score=251.44  Aligned_cols=208  Identities=18%  Similarity=0.199  Sum_probs=156.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----cc-chHHHHHHHHHHh---CCCCCcceeeeecCc---ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQ-GVVIVDEEQLLKL---IKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~-~~~~~~E~~il~~---l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +||+|+||.||+|.+..+|+.+|+ |....     .. .....+|..+++.   ..||+|+.+++.+.+   .|++||| 
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAM-KCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEE-EEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            589999999999999999998885 43322     11 1234455544443   479999998887653   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|...                    .|+.|||+      .||+||||||+||+++.+   +.++|+|||++......
T Consensus        80 ~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~------~~ivH~dikp~Nil~~~~---~~~~l~dfg~~~~~~~~  150 (279)
T cd05633          80 NGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHN------RFVVYRDLKPANILLDEH---GHVRISDLGLACDFSKK  150 (279)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcCCCCCCHHHEEECCC---CCEEEccCCcceecccc
Confidence             6777544                    56777777      999999999999999875   89999999998765332


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh--HHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD--SETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                       ......|++.|+||                |+||++|+|++|..||.+...  .......   ....+...+..+++++
T Consensus       151 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  226 (279)
T cd05633         151 -KPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM---TLTVNVELPDSFSPEL  226 (279)
T ss_pred             -CccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHH---hhcCCcCCccccCHHH
Confidence             22345789999999                999999999999999975432  1122221   1122223334689999


Q ss_pred             HHHHHHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         198 KDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                      .++|.+||..||++||     |+.++++||||++.++..
T Consensus       227 ~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~~~~  265 (279)
T cd05633         227 KSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQ  265 (279)
T ss_pred             HHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCCHhH
Confidence            9999999999999999     699999999999866443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=2.6e-32  Score=250.08  Aligned_cols=203  Identities=23%  Similarity=0.311  Sum_probs=164.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ...||.|+||.||+|.+..+++.+|+ |....      .....+.+|+.+++.++||||+++++.+.+   .|+++||  
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   83 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAM-KYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLL   83 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEE-EEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCC
Confidence            35799999999999999999999884 44332      234578999999999999999999888664   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +++|...                    .|+.|||.      +|++|+||+|+||+++++   +.++|+|||++.......
T Consensus        84 ~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~------~~i~h~dl~~~nil~~~~---~~~~l~d~~~~~~~~~~~  154 (258)
T cd05578          84 GGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHS------KGIIHRDIKPDNILLDEQ---GHVHITDFNIATKVTPDT  154 (258)
T ss_pred             CCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHeEEcCC---CCEEEeecccccccCCCc
Confidence            5555444                    55667776      999999999999999986   899999999998765544


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh---HHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD---SETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ......|+..|+||               |+|+++|+|++|..||...+.   .............+|    ..++.++.
T Consensus       155 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  230 (258)
T cd05578         155 LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYP----ATWSTEAI  230 (258)
T ss_pred             cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCc----ccCcHHHH
Confidence            44556788899999               999999999999999987663   334333332333333    35789999


Q ss_pred             HHHHHhcccCCCCCCCH--HHHhcCccc
Q psy6046         199 DFIAKILIKNPMERMTA--KEALKHPWL  224 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~--~e~l~hp~~  224 (379)
                      ++|.+||..||.+||++  +|+++||||
T Consensus       231 ~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         231 DAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             HHHHHHccCChhHcCCccHHHHhcCCCC
Confidence            99999999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=5.7e-32  Score=251.27  Aligned_cols=204  Identities=23%  Similarity=0.271  Sum_probs=161.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhC-CCCCcceeeeecC---------cceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLI-KVEPIEKYYSLDP---------EPLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l-~hpnIv~~~~~~~---------~~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..+++.+| +|.....  ....+..|+.+++.+ +||||+++++++.         .+|++|||
T Consensus        22 ~~lg~g~~~~v~~~~~~~~~~~~a-~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~  100 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKTGQLAA-IKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEF  100 (282)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEE-EEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEe
Confidence            489999999999999999998777 5554432  345688899999998 6999999998863         26899999


Q ss_pred             --CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          77 --RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        77 --~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                        +|++...                      .|+.|||+      +||+||||+|+||+++.+   +.++|+|||++...
T Consensus       101 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~------~~ivH~dl~~~nili~~~---~~~~l~dfg~~~~~  171 (282)
T cd06636         101 CGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHA------HKVIHRDIKGQNVLLTEN---AEVKLVDFGVSAQL  171 (282)
T ss_pred             CCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEeeCcchhhh
Confidence              5555544                      56667776      999999999999999975   78999999998765


Q ss_pred             ccC-ccccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         133 LDG-IEIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       133 ~~~-~~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ... .......|++.|+||                    |+||++|+|++|.+||...........+.....  +.....
T Consensus       172 ~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~  249 (282)
T cd06636         172 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPP--PKLKSK  249 (282)
T ss_pred             hccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCC--CCCccc
Confidence            322 123446688889888                    999999999999999987665544444433321  122223


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++.++.+||.+||..||.+|||+.|+++||||
T Consensus       250 ~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         250 KWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             ccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            578999999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4e-32  Score=259.21  Aligned_cols=200  Identities=17%  Similarity=0.174  Sum_probs=151.8

Q ss_pred             ccCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc----ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEK-----TTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~v   73 (379)
                      .+.||+|+||.||+|.+.     .++..|| +|....    .....+.+|+.+++.+ +||||+++++++.+    +|++
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVA-VKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVI   90 (338)
T ss_pred             eeEeccCCcceEEEEEEeccCCcccchhhh-eeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEE
Confidence            458999999999999753     3344566 555433    2235688999999999 89999999997653    7899


Q ss_pred             eeC--CchhhHH--------------------------------------------------------------------
Q psy6046          74 LNP--RPPVYQA--------------------------------------------------------------------   83 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------------------------------------------------------   83 (379)
                      |||  +|+|.+.                                                                    
T Consensus        91 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T cd05102          91 VEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSP  170 (338)
T ss_pred             EecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCC
Confidence            999  6666422                                                                    


Q ss_pred             --------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---ccccccCCC
Q psy6046          84 --------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPD  146 (379)
Q Consensus        84 --------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~  146 (379)
                                    .|+.|||+      .||+||||||+|||++.+   +.+||+|||+++.......   .....+++.
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~------~~ivHrDiKp~Nil~~~~---~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~  241 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLAS------RKCIHRDLAARNILLSEN---NVVKICDFGLARDIYKDPDYVRKGSARLPLK  241 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH------CCEECCCCccceEEEcCC---CcEEEeecccccccccCcchhcccCCCCCcc
Confidence                          45666666      999999999999999875   8999999999986533221   122345678


Q ss_pred             Ccch---------------HHHHHHHHHhh-CCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCC
Q psy6046         147 YVGK---------------SLGVTAYVLLT-GFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP  209 (379)
Q Consensus       147 y~aP---------------SlGvil~~llt-g~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  209 (379)
                      |+||               |+||++|+|++ |..||.+.... .....+..+....+   ...+++.+.+++.+||..||
T Consensus       242 y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dp  318 (338)
T cd05102         242 WMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRA---PENATPEIYRIMLACWQGDP  318 (338)
T ss_pred             ccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHccCCh
Confidence            9999               99999999997 99999876543 33444444432211   23678999999999999999


Q ss_pred             CCCCCHHHHhc
Q psy6046         210 MERMTAKEALK  220 (379)
Q Consensus       210 ~~Rpt~~e~l~  220 (379)
                      ++|||+.++++
T Consensus       319 ~~RPs~~el~~  329 (338)
T cd05102         319 KERPTFSALVE  329 (338)
T ss_pred             hhCcCHHHHHH
Confidence            99999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=6.2e-32  Score=247.05  Aligned_cols=205  Identities=20%  Similarity=0.258  Sum_probs=165.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+.||+|+||.||+|.++.+|..+|+ |....     .+...+.+|+.+++.++||||+++++.+.+   +|+++||  +
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSDSEHCVI-KEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDG   83 (257)
T ss_pred             EEEecCCCcceEEEEEEcCCCceEEE-EEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCC
Confidence            45799999999999999999988874 54432     234568899999999999999999988665   7999999  5


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +++.+.                      .|+.|||+      .+++|+||||+||+++++  ...+||+|||.+......
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~H~dl~~~nil~~~~--~~~~~l~d~~~~~~~~~~  155 (257)
T cd08225          84 GDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD------RKILHRDIKSQNIFLSKN--GMVAKLGDFGIARQLNDS  155 (257)
T ss_pred             CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccccCCHHHEEEcCC--CCeEEecccccchhccCC
Confidence            555443                      56677777      999999999999999875  245799999999766443


Q ss_pred             c-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 I-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      . ......|++.|+||               |+|+++|+|++|..||.+.+..+....+..+....   ..+.++.++.+
T Consensus       156 ~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  232 (257)
T cd08225         156 MELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAP---ISPNFSRDLRS  232 (257)
T ss_pred             cccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCC---CCCCCCHHHHH
Confidence            2 22334688899999               99999999999999998877776666665544322   22357899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +|.+||..+|++|||+.+++.||||
T Consensus       233 ~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         233 LISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             HHHHHhccChhhCcCHHHHhhCCCC
Confidence            9999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=7e-32  Score=248.37  Aligned_cols=209  Identities=21%  Similarity=0.203  Sum_probs=160.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-c--------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-S--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      +.+||+|+||.||+|.+..+|+.+|+ |.... .        ....+.+|+.+++.++||||+++++++.+   +++++|
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~al-k~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e   83 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKTGTLMAV-KQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVE   83 (268)
T ss_pred             cceecCcCceEEEEEEEcCCCcEEEE-EEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEe
Confidence            35899999999999999999999885 43332 1        23568999999999999999999998764   789999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +  +++|.+.                    .|+.|||+      +|++||||+|+||+++..  +..+||+|||.+....
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~------~~i~H~~i~~~nil~~~~--~~~~~l~dfg~~~~~~  155 (268)
T cd06630          84 WMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHE------NQIIHRDVKGANLLIDST--GQRLRIADFGAAARLA  155 (268)
T ss_pred             ccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC--CCEEEEcccccccccc
Confidence            9  5555443                    55666666      999999999999999764  2469999999997764


Q ss_pred             cCc-----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh-CCCCCCcccccC
Q psy6046         134 DGI-----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISK-AQLDFPDELFED  192 (379)
Q Consensus       134 ~~~-----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~-~~~~~~~~~~~~  192 (379)
                      ...     ......|+..|+||               |+|+++|+|++|..||...........+.. .....+......
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (268)
T cd06630         156 AKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEH  235 (268)
T ss_pred             cccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchh
Confidence            321     12234678899999               999999999999999975443222222211 111112223346


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      +++++.+++.+||..+|.+|||+.++++||||+
T Consensus       236 ~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         236 LSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             hCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence            789999999999999999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=7.6e-32  Score=257.89  Aligned_cols=213  Identities=22%  Similarity=0.265  Sum_probs=163.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecC-----------------
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----------------   68 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----------------   68 (379)
                      .+.||.|+||.||+|.+..+|+.||+++....  .....+.+|+++++.++||||+++++.+.                 
T Consensus        10 ~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   89 (342)
T cd07854          10 LRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELN   89 (342)
T ss_pred             EEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccc
Confidence            34899999999999999999999886444322  33456889999999999999999887543                 


Q ss_pred             cceEEeeC-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          69 EPLLGLNP-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        69 ~~~~v~e~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      ..|+++|| .+.+...                   .|+.|||.      .||+||||||+||+++.+  ++.+||+|||.
T Consensus        90 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~givH~dikp~Nili~~~--~~~~kl~dfg~  161 (342)
T cd07854          90 SVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHS------ANVLHRDLKPANVFINTE--DLVLKIGDFGL  161 (342)
T ss_pred             eEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEEcCC--CceEEECCccc
Confidence            25899999 5555433                   66777777      999999999999999864  36799999999


Q ss_pred             ceeeccCc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC----
Q psy6046         129 SRVILDGI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD----  184 (379)
Q Consensus       129 a~~~~~~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~----  184 (379)
                      +.......    ......++..|+||                |+||++|+|++|+.||.+.+..+....+......    
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  241 (342)
T cd07854         162 ARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREE  241 (342)
T ss_pred             ceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChH
Confidence            97653221    12234578889999                9999999999999999877665544443321100    


Q ss_pred             ---------------------CC-cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         185 ---------------------FP-DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       185 ---------------------~~-~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                           .+ ....+.++.++.+||.+||..||.+|||+.+++.||||+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~~  307 (342)
T cd07854         242 DRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCYS  307 (342)
T ss_pred             HhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCcccccc
Confidence                                 00 111235789999999999999999999999999999998644

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=9.3e-32  Score=251.07  Aligned_cols=210  Identities=20%  Similarity=0.218  Sum_probs=156.5

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +-....||+|+||.||+|.+..+|+.+|+ |....    .....+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus         7 y~~~~~ig~g~~~~v~~~~~~~~~~~~~i-K~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~   85 (291)
T cd07870           7 YLNLEKLGEGSYATVYKGISRINGQLVAL-KVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYM   85 (291)
T ss_pred             eEEEEEEEecCCEEEEEEEEcCCCcEEEE-EEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEecc
Confidence            33445899999999999999999998885 44332    112357899999999999999999998665   7899999 


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      .+.+...                     .|+.|||+      .||+||||||+||+++.+   +.++|+|||+++.....
T Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~i~H~dlkp~Nil~~~~---~~~~l~Dfg~~~~~~~~  156 (291)
T cd07870          86 HTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHG------QHILHRDLKPQNLLISYL---GELKLADFGLARAKSIP  156 (291)
T ss_pred             cCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCChHHEEEcCC---CcEEEeccccccccCCC
Confidence            4444332                     45666666      999999999999999875   89999999998764322


Q ss_pred             c-cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCC--------------
Q psy6046         136 I-EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQL--------------  183 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~--------------  183 (379)
                      . ......+++.|+||                |+|+++|+|++|..||.+.+. .+.+..+.....              
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (291)
T cd07870         157 SQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLP  236 (291)
T ss_pred             CCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcc
Confidence            1 23344578889998                999999999999999976543 222222211000              


Q ss_pred             C---------CCc---cccc--CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 D---------FPD---ELFE--DISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~---------~~~---~~~~--~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .         .+.   ..+.  ..++++.+++.+||..||++|||+.|++.||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         237 NYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             cccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            0         000   0011  126789999999999999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=5.5e-32  Score=251.59  Aligned_cols=207  Identities=19%  Similarity=0.240  Sum_probs=161.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|.+..+|+.+|++......    ..+.+.+|+++++.++||||+++++++.+   .|+++||  ++.
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   86 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTV   86 (286)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccH
Confidence            58999999999999999999888854322211    23457899999999999999999998765   8999999  333


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      +...                    .|+.|||+      .|++||||+|+||+++++   +.++|+|||++....... ..
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~h~~l~p~ni~~~~~---~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07846          87 LDDLEKYPNGLDESRVRKYLFQILRGIEFCHS------HNIIHRDIKPENILVSQS---GVVKLCDFGFARTLAAPGEVY  157 (286)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEECCC---CcEEEEeeeeeeeccCCcccc
Confidence            3322                    56777777      999999999999999875   899999999998754332 23


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-------------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-------------------  183 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-------------------  183 (379)
                      ....++..|+||                |+|+++|+|++|++||.+.+..+....+.....                   
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07846         158 TDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGM  237 (286)
T ss_pred             CcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcc
Confidence            345678888888                999999999999999987665544443332100                   


Q ss_pred             CCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..+.        ..++.++..+.+|+.+||..+|.+||++.+++.||||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         238 RLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             ccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            0110        1234678999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.3e-31  Score=246.53  Aligned_cols=210  Identities=19%  Similarity=0.202  Sum_probs=163.7

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ce
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PL   71 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~   71 (379)
                      +.-.+++||+|+||.||+|.+..+|..||++.....       .....+.+|+.+++.++||||+++++++.+     ++
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLS   82 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEE
Confidence            344567999999999999999999998885433211       123468889999999999999999997653     67


Q ss_pred             EEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccc
Q psy6046          72 LGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEIS  129 (379)
Q Consensus        72 ~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a  129 (379)
                      +++||  +|+|.+.                    .|+.|||+      .|++|+||||+||+++.+   +.++|+|||.+
T Consensus        83 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~Dfg~~  153 (265)
T cd06652          83 IFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHS------NMIVHRDIKGANILRDSV---GNVKLGDFGAS  153 (265)
T ss_pred             EEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEecCC---CCEEECcCccc
Confidence            89999  5666655                    45666666      999999999999999875   89999999998


Q ss_pred             eeeccC----ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         130 RVILDG----IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       130 ~~~~~~----~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ......    .......|+..|+||               |+||++|+|++|+.||.+.........+......  +...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~  231 (265)
T cd06652         154 KRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN--PVLP  231 (265)
T ss_pred             cccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCC--CCCc
Confidence            764321    122345688899999               9999999999999999877655555444433211  1222


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ..++..+.++|.+||. +|++||++++++.|||+.
T Consensus       232 ~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         232 PHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             hhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence            3578899999999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.6e-31  Score=249.10  Aligned_cols=209  Identities=19%  Similarity=0.297  Sum_probs=168.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      .||+|++|.||+|.+..+++.+++++....  .....+.+|+.+++.++||||+++++.+..   .|+++||  ++.|.+
T Consensus        26 ~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~  105 (285)
T cd06648          26 KIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTD  105 (285)
T ss_pred             EeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHH
Confidence            899999999999999999988885443222  234568899999999999999999987543   8899999  556654


Q ss_pred             H-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccc
Q psy6046          83 A-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELL  142 (379)
Q Consensus        83 ~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~  142 (379)
                      .                   .|+.|||+      +||+||||+|+||+++.+   +.++|+|||++....... ......
T Consensus       106 ~~~~~~~~~~~~~~~~~ql~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~~l~d~g~~~~~~~~~~~~~~~~  176 (285)
T cd06648         106 IVTHTRMNEEQIATVCLAVLKALSFLHA------QGVIHRDIKSDSILLTSD---GRVKLSDFGFCAQVSKEVPRRKSLV  176 (285)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCChhhEEEcCC---CcEEEcccccchhhccCCccccccc
Confidence            3                   46677777      999999999999999875   899999999887554322 223456


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |++.|+||               |+|+++|+|++|..||.+.+.......+......... ....++..+.+|+.+||..
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~  255 (285)
T cd06648         177 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLK-NLHKVSPRLRSFLDRMLVR  255 (285)
T ss_pred             CCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCc-ccccCCHHHHHHHHHHccc
Confidence            88999999               9999999999999999888877777777665322221 1234789999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|.+|||+.++++||||+...
T Consensus       256 ~p~~Rpt~~~il~~~~~~~~~  276 (285)
T cd06648         256 DPAQRATAAELLNHPFLAKAG  276 (285)
T ss_pred             ChhhCcCHHHHccCcccccCC
Confidence            999999999999999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-31  Score=249.48  Aligned_cols=207  Identities=19%  Similarity=0.228  Sum_probs=160.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||.|++|.||+|.+..+|..||+++.....    ....+.+|+.+++.++|||++++++++.+   .|+++|| .+.+
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~~~l   84 (283)
T cd07835           5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLDLDL   84 (283)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccCcCH
Confidence            47899999999999999999988854332221    12457889999999999999999988665   7899999 4433


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      ...                      .|+.|||+      ++++||||+|+||+++.+   +.++|+|||++....... .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~------~~~~H~dl~p~nil~~~~---~~~~l~df~~~~~~~~~~~~  155 (283)
T cd07835          85 KKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHS------HRVLHRDLKPQNLLIDRE---GALKLADFGLARAFGVPVRT  155 (283)
T ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeCCCCCHHHEEEcCC---CcEEEeecccccccCCCccc
Confidence            332                      56778887      999999999999999985   899999999997653221 1


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC------------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL------------------  183 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~------------------  183 (379)
                      .....+++.|+||                |+|+++|+|++|++||.+.+.......+.+...                  
T Consensus       156 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd07835         156 YTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKP  235 (283)
T ss_pred             cCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhh
Confidence            2334567788888                999999999999999988776554444322110                  


Q ss_pred             -------CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 -------DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 -------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                             .......+.+++.+.++|.+||+.||.+|||+++++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         236 TFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             hcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence                   11112234678999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=8.6e-32  Score=249.64  Aligned_cols=207  Identities=23%  Similarity=0.257  Sum_probs=168.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||.|+||.||+|.+..++..+|+ |....    .....+.+|+.+++.++||||+++++.+.+   +|+++||  +|+
T Consensus        10 ~~lg~g~~~~vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06640          10 ERIGKGSFGEVFKGIDNRTQQVVAI-KIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGS   88 (277)
T ss_pred             hhcccCCCeEEEEEEEccCCEEEEE-EEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCc
Confidence            3799999999999999999988874 54432    223568899999999999999999998664   8999999  667


Q ss_pred             hhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          80 VYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        80 l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      +.+.                   .|+.|+|+      .+++|+||+|+||+++.+   +.++|+|||++....... ...
T Consensus        89 L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~------~~ivH~dl~p~Nil~~~~---~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06640          89 ALDLLRAGPFDEFQIATMLKEILKGLDYLHS------EKKIHRDIKAANVLLSEQ---GDVKLADFGVAGQLTDTQIKRN  159 (277)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCccCcCCChhhEEEcCC---CCEEEcccccceeccCCccccc
Confidence            7665                   55677777      999999999999999975   789999999997765433 223


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...++..|+||               |+|+++|+|++|.+||.+.+.......+..+.   ++.....++.++.+++.+|
T Consensus       160 ~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~  236 (277)
T cd06640         160 TFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNN---PPTLTGEFSKPFKEFIDAC  236 (277)
T ss_pred             cccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCC---CCCCchhhhHHHHHHHHHH
Confidence            34678889999               99999999999999998877666655554332   2233345789999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..+|++||++.+++.||||....
T Consensus       237 l~~~p~~Rp~~~~il~~~~~~~~~  260 (277)
T cd06640         237 LNKDPSFRPTAKELLKHKFIVKNA  260 (277)
T ss_pred             cccCcccCcCHHHHHhChHhhhcc
Confidence            999999999999999999997654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=5.3e-32  Score=250.94  Aligned_cols=207  Identities=23%  Similarity=0.223  Sum_probs=165.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|.+..+|..+| +|....    .....+.+|+.+++.++||||+++++.+..   +|+++||  +|.
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVA-IKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGS   88 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEE-EEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCc
Confidence            379999999999999998888877 455442    223468899999999999999999988654   8999999  566


Q ss_pred             hhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          80 VYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        80 l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      +...                   .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++....... ...
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~ivH~dl~p~ni~i~~~---~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06642          89 ALDLLKPGPLEETYIATILREILKGLDYLHS------ERKIHRDIKAANVLLSEQ---GDVKLADFGVAGQLTDTQIKRN  159 (277)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc------CCeeccCCChheEEEeCC---CCEEEccccccccccCcchhhh
Confidence            6544                   45666666      999999999999999875   889999999997664332 223


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...|+..|+||               |+||++|+|++|+.||...........+..+..   ......++.++.++|.+|
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~  236 (277)
T cd06642         160 TFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSP---PTLEGQYSKPFKEFVEAC  236 (277)
T ss_pred             cccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCC---CCCCcccCHHHHHHHHHH
Confidence            34678899999               999999999999999987666555554443322   122235789999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..+|.+|||+.+++.||||....
T Consensus       237 l~~~p~~Rp~~~~il~~~~~~~~~  260 (277)
T cd06642         237 LNKDPRFRPTAKELLKHKFITRYT  260 (277)
T ss_pred             ccCCcccCcCHHHHHHhHHHHHHh
Confidence            999999999999999999997544

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.7e-32  Score=255.53  Aligned_cols=216  Identities=26%  Similarity=0.323  Sum_probs=171.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e   75 (379)
                      ...||+|+||.||+|++..+|+.+|+++....    .....+.+|+.+++.++||||+++++++.        .+|+++|
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e   84 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTE   84 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEec
Confidence            45899999999999999999998885444332    23456899999999999999999988753        3689999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | .+.+...                    .|+.+||+      .||+||||||+||+++.+   +.++|+|||++.....
T Consensus        85 ~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~------~gi~H~dlkp~nili~~~---~~~~L~dfg~~~~~~~  155 (330)
T cd07834          85 LMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHS------ANVIHRDLKPSNILVNSN---CDLKICDFGLARGVDP  155 (330)
T ss_pred             chhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEcccCceEeecc
Confidence            9 4444433                    55677777      999999999999999985   8999999999987655


Q ss_pred             Cc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-------
Q psy6046         135 GI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-------  187 (379)
Q Consensus       135 ~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-------  187 (379)
                      ..    ......+++.|+||                |+|+++|+|++|.+||.+.+..+.+..+.......+.       
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  235 (330)
T cd07834         156 DEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFIT  235 (330)
T ss_pred             cccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhcc
Confidence            43    23445688899999                9999999999999999988877666665442111110       


Q ss_pred             --------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         188 --------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       188 --------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                          ...+.+++++.+||.+||..+|.+|||+++++.||||++....+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~~  300 (330)
T cd07834         236 SEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPED  300 (330)
T ss_pred             ccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccccc
Confidence                                112347899999999999999999999999999999988765443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.2e-32  Score=272.90  Aligned_cols=211  Identities=16%  Similarity=0.089  Sum_probs=150.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEE------------------eccc--ccchHHHHHHHHHHhCCCCCcceeeeecC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWK------------------ERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDP   68 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k------------------~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~   68 (379)
                      ..||+|+||+||+|..+......++.|                  ....  .....+.+|+.+|+.++||||+++++++.
T Consensus       154 ~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~  233 (501)
T PHA03210        154 DDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIEEILR  233 (501)
T ss_pred             eEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcCcEeEEEE
Confidence            389999999999987655433322111                  1111  12345789999999999999999999875


Q ss_pred             c---ceEEeeC-CchhhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          69 E---PLLGLNP-RPPVYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        69 ~---~~~v~e~-~g~l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      +   .|+++++ .+.++..                         .|+.|||+      +||+||||||+|||++.+   +
T Consensus       234 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~------~gIiHrDLKP~NILl~~~---~  304 (501)
T PHA03210        234 SEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD------KKLIHRDIKLENIFLNCD---G  304 (501)
T ss_pred             ECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---C
Confidence            4   6788776 3333321                         56777777      999999999999999885   8


Q ss_pred             cEEEeecccceeeccCcc--ccccccCCCCcch---------------HHHHHHHHHhhCCCC-CCCC--ChHHHHHHHH
Q psy6046         120 DIKVCDFEISRVILDGIE--IRELLGTPDYVGK---------------SLGVTAYVLLTGFSP-FGGE--TDSETFRNIS  179 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~--~~~~~gt~~y~aP---------------SlGvil~~lltg~~P-f~~~--~~~~~~~~i~  179 (379)
                      .+||+|||+++.+.....  ....+||+.|+||               |+||++|+|++|..| |.+.  .....+..+.
T Consensus       305 ~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~  384 (501)
T PHA03210        305 KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKII  384 (501)
T ss_pred             CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHH
Confidence            999999999987654322  2346799999999               999999999998754 4322  2222222221


Q ss_pred             hC-C---CCCCc----------------------cc--ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         180 KA-Q---LDFPD----------------------EL--FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       180 ~~-~---~~~~~----------------------~~--~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .. .   ..+|.                      ..  ...++.++.++|.+||..||.+|||+.|+|.||||....
T Consensus       385 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        385 DSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             HhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCC
Confidence            11 0   01110                      00  013567888999999999999999999999999997543

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.5e-32  Score=258.04  Aligned_cols=211  Identities=25%  Similarity=0.299  Sum_probs=166.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|++..+++.+|+++....    .....+.+|+.+++.++||||+++.+++.         ..|+++|
T Consensus        21 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e  100 (343)
T cd07851          21 SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTH  100 (343)
T ss_pred             EEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEe
Confidence            4899999999999999999988885443321    22355788999999999999999877543         2789999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      + +++|.+.                   .|+.|||+      .||+||||||+||+++++   +.++|+|||++......
T Consensus       101 ~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~------~gi~H~dlkp~Nill~~~---~~~kL~dfg~~~~~~~~  171 (343)
T cd07851         101 LMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHS------AGIIHRDLKPSNIAVNED---CELKILDFGLARHTDDE  171 (343)
T ss_pred             cCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEECCC---CCEEEcccccccccccc
Confidence            9 6666554                   56777777      999999999999999985   88999999999765332


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD------------  187 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~------------  187 (379)
                        .....+++.|+||                |+|+++|+|++|+.||.+.+..+.+..+.......++            
T Consensus       172 --~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07851         172 --MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESAR  249 (343)
T ss_pred             --ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHH
Confidence              3445678889998                9999999999999999887776665555432111110            


Q ss_pred             ---------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         188 ---------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       188 ---------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                     ..+...++.+.+||.+||..||.+|||+.+++.||||.+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~  307 (343)
T cd07851         250 NYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDP  307 (343)
T ss_pred             HHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCC
Confidence                           1123468999999999999999999999999999999876544

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.98  E-value=1.2e-31  Score=256.93  Aligned_cols=212  Identities=25%  Similarity=0.272  Sum_probs=163.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|+.||+++....    ...+.+.+|+.+++.++||||+++++++.         ..|++++
T Consensus        23 ~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~  102 (345)
T cd07877          23 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTH  102 (345)
T ss_pred             EEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEeh
Confidence            4799999999999999999998885444322    12356788999999999999999988753         2678888


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      + ++.+...                   .|++|||+      +||+||||||+||+++.+   +.+||+|||++..... 
T Consensus       103 ~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~NIll~~~---~~~kl~dfg~~~~~~~-  172 (345)
T cd07877         103 LMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS------ADIIHRDLKPSNLAVNED---CELKILDFGLARHTDD-  172 (345)
T ss_pred             hcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCChHHEEEcCC---CCEEEecccccccccc-
Confidence            7 5555432                   56777777      999999999999999985   8899999999876432 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC--------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF--------------  185 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~--------------  185 (379)
                       ......+++.|+||                |+||++|+|++|++||.+.+....+..+.......              
T Consensus       173 -~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (345)
T cd07877         173 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR  251 (345)
T ss_pred             -cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHH
Confidence             23445688889999                99999999999999998776655444433221110              


Q ss_pred             ---------C----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         186 ---------P----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       186 ---------~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                               +    ...+...++++++||.+||..||.+|||+.+++.||||.+.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~~~  310 (345)
T cd07877         252 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPD  310 (345)
T ss_pred             HHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCCCC
Confidence                     0    011124688999999999999999999999999999998765433

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.98  E-value=3.8e-31  Score=249.13  Aligned_cols=206  Identities=17%  Similarity=0.198  Sum_probs=163.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ..||+|+||.||+|.+..+|+.||+++....     .....+.+|+.+++.++||||+++++++.+   .|+++|| .|.
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~g~  100 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGS  100 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhCCC
Confidence            3899999999999999999998885443221     122458899999999999999999998654   7899998 444


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +.+.                     .|+.|||+      .||+||||+|+||+++++   +.++|+|||++......   
T Consensus       101 l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~------~~i~H~dl~p~nIl~~~~---~~~kL~dfg~~~~~~~~---  168 (307)
T cd06607         101 ASDILEVHKKPLQEVEIAAICHGALQGLAYLHS------HERIHRDIKAGNILLTEP---GTVKLADFGSASLVSPA---  168 (307)
T ss_pred             HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCcccEEECCC---CCEEEeecCcceecCCC---
Confidence            3332                     55677776      999999999999999985   89999999998765322   


Q ss_pred             cccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 RELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 ~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ....+++.|+||                  |+|+++|+|++|++||.+.+.......+......  ......++..+.++
T Consensus       169 ~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  246 (307)
T cd06607         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSP--TLSSNDWSDYFRNF  246 (307)
T ss_pred             CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCC--CCCchhhCHHHHHH
Confidence            335677788888                  8999999999999999887776655555443221  11112478899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..+|++||++.+++.||||....
T Consensus       247 i~~~l~~~p~~Rp~~~~il~~~~~~~~~  274 (307)
T cd06607         247 VDSCLQKIPQDRPSSEELLKHRFVLRER  274 (307)
T ss_pred             HHHHhcCChhhCcCHHHHhcChhhcccC
Confidence            9999999999999999999999997643

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.98  E-value=2.1e-31  Score=247.38  Aligned_cols=208  Identities=18%  Similarity=0.218  Sum_probs=159.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc-----c-chHHHHHH---HHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS-----Q-GVVIVDEE---QLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~-~~~~~~E~---~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +||+|+||.||+|.+..+|+.||+ |.....     . ......|.   .+++...||+|+.+++.+.+   +|+++|| 
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAM-KCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEE-EEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            589999999999999999998885 443321     1 11233443   34555679999998887654   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|.|...                    .|+.|||+      .+|+||||||+||+++.+   +.++|+|||++......
T Consensus        80 ~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~------~~i~H~di~p~nili~~~---~~~kl~dfg~~~~~~~~  150 (278)
T cd05606          80 NGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHN------RFVVYRDLKPANILLDEH---GHVRISDLGLACDFSKK  150 (278)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCEEcCCCCHHHEEECCC---CCEEEccCcCccccCcc
Confidence             6666544                    46677777      999999999999999875   78999999998765332


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                       .....+|+..|+||                |+|+++|+|++|+.||.+.   ........+.......|    ..+|++
T Consensus       151 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~  225 (278)
T cd05606         151 -KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP----DSFSPE  225 (278)
T ss_pred             -CCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCC----CcCCHH
Confidence             23445789999998                9999999999999999865   33333333333333333    357999


Q ss_pred             HHHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         197 AKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +.+++.+||..+|.+||     ++.++++||||+...+...
T Consensus       226 ~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~~~~~  266 (278)
T cd05606         226 LRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMV  266 (278)
T ss_pred             HHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCCchHh
Confidence            99999999999999999     9999999999998775543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG4250|consensus

Probab=99.98  E-value=6.4e-33  Score=270.75  Aligned_cols=200  Identities=24%  Similarity=0.270  Sum_probs=157.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v   73 (379)
                      ..++||+||||.||+++++.||+.+|+ |..+    ...++.-.+|+++|++|+|||||+++++-++         ..++
T Consensus        17 ~~e~LG~Ga~g~V~rgrnketG~~vAv-K~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   17 MDERLGKGAFGNVYRGRNKETGRLVAV-KTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             ehhhhcCCccceeeeecccccccchhH-HhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            345999999999999999999999995 4333    4567788999999999999999999998554         5689


Q ss_pred             eeC--CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeecc
Q psy6046          74 LNP--RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFE  127 (379)
Q Consensus        74 ~e~--~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG  127 (379)
                      |||  +|+|+..                       .|+.|||.      +||+||||||.||++-...+ ....||+|||
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE------n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG  169 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE------NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFG  169 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH------cCceeccCCCCcEEEeecCCCceEEeeeccc
Confidence            999  8999988                       78999998      99999999999999876532 2346999999


Q ss_pred             cceeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCC----ChHHHHHHHHhCC-----
Q psy6046         128 ISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQ-----  182 (379)
Q Consensus       128 ~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~----~~~~~~~~i~~~~-----  182 (379)
                      .|+..++++...+.+||+.|.+|                |+||++|+++||..||...    +..+....+...+     
T Consensus       170 ~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~  249 (732)
T KOG4250|consen  170 AARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVA  249 (732)
T ss_pred             ccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCcee
Confidence            99999999999999999999999                9999999999999999431    1223333332221     


Q ss_pred             ----------CCCCc--ccccCCCHH----HHHHHHHhcccCCCCCC
Q psy6046         183 ----------LDFPD--ELFEDISPE----AKDFIAKILIKNPMERM  213 (379)
Q Consensus       183 ----------~~~~~--~~~~~~s~~----~~~li~~~L~~dP~~Rp  213 (379)
                                +.+..  +....+++.    +-.++..+|..+|.+|.
T Consensus       250 i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  250 IGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             EeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhC
Confidence                      11100  011123333    34577788999999998

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.98  E-value=1.3e-31  Score=248.89  Aligned_cols=206  Identities=23%  Similarity=0.321  Sum_probs=161.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||.|++|.||+|++..+|..+|+ |....    .....+.+|+.+++.++||||+++++.+.+   .|+++|| .|.+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~i-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l   84 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVAL-KEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDKDL   84 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEE-EEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCccH
Confidence            4799999999999999999988874 44332    223567889999999999999999998765   7999999 4443


Q ss_pred             hHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          81 YQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        81 ~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      ...                       .|+.|||+      .|++||||||+||+++++   +.++|+|||++....... 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~h~dl~p~ni~~~~~---~~~~l~d~g~~~~~~~~~~  155 (284)
T cd07836          85 KKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE------NRVLHRDLKPQNLLINKR---GELKLADFGLARAFGIPVN  155 (284)
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCHHHEEECCC---CcEEEeecchhhhhcCCcc
Confidence            332                       56777777      999999999999999875   899999999997653321 


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-----------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-----------------  183 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-----------------  183 (379)
                      ......+++.|+||                |+|+++|+|++|++||.+.+..+....+.....                 
T Consensus       156 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (284)
T cd07836         156 TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYK  235 (284)
T ss_pred             ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhc
Confidence            22334577889888                999999999999999988776665554432110                 


Q ss_pred             -CCC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 -DFP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 -~~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                       .++       ....+.+++.++++|.+||+.||.+||++.++++||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         236 PTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             ccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence             000       01123468899999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0596|consensus

Probab=99.98  E-value=2.8e-32  Score=259.10  Aligned_cols=204  Identities=21%  Similarity=0.284  Sum_probs=157.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeCC-chh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNPR-PPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~~-g~l   80 (379)
                      .||+||-++||++..... ..||++|+...    .-..-+.+|+..|.+|+ |.+|+++|++-..   +|++||+| -+|
T Consensus       368 ~iG~GGSSkV~kV~~s~~-~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~DL  446 (677)
T KOG0596|consen  368 QIGSGGSSKVFKVLNSDK-QIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGDIDL  446 (677)
T ss_pred             hhcCCCcceeeeeecCCC-cchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecccccH
Confidence            799999999999984433 45665665443    22345899999999998 9999999998443   89999991 111


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---  136 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---  136 (379)
                      -..                     .|+.++|.      +||||.||||.|+|+-.    |.+||+|||+|..+..+.   
T Consensus       447 ~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~------~gIVHSDLKPANFLlVk----G~LKLIDFGIA~aI~~DTTsI  516 (677)
T KOG0596|consen  447 NKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQ------HGIVHSDLKPANFLLVK----GRLKLIDFGIANAIQPDTTSI  516 (677)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHHHHHHH------hceeecCCCcccEEEEe----eeEEeeeechhcccCccccce
Confidence            111                     78888888      99999999999999997    899999999999876543   


Q ss_pred             cccccccCCCCcch--------------------------HHHHHHHHHhhCCCCCCCC-ChHHHHHHHHhCC--CCCCc
Q psy6046         137 EIRELLGTPDYVGK--------------------------SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQ--LDFPD  187 (379)
Q Consensus       137 ~~~~~~gt~~y~aP--------------------------SlGvil~~lltg~~Pf~~~-~~~~~~~~i~~~~--~~~~~  187 (379)
                      ...+.+||+.||+|                          |||||+|+|+.|++||... +...-+..|....  +.||.
T Consensus       517 ~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~  596 (677)
T KOG0596|consen  517 VKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPD  596 (677)
T ss_pred             eeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccC
Confidence            23457899999999                          9999999999999999653 2334444454432  24443


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..   -..++.++++.||..||++|||+.++|.|||++..
T Consensus       597 ~~---~~~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~~  633 (677)
T KOG0596|consen  597 IP---ENDELIDVMKCCLARDPKKRWSIPELLQHPFLQIQ  633 (677)
T ss_pred             CC---CchHHHHHHHHHHhcCcccCCCcHHHhcCcccccc
Confidence            21   12339999999999999999999999999999753

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.98  E-value=1.8e-31  Score=247.45  Aligned_cols=213  Identities=21%  Similarity=0.211  Sum_probs=166.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|.+..+++.+|+ |.....    ....+.+|+.+++.++||||+++++.+.+   +|+++||  +|.
T Consensus        10 ~~ig~G~~~~vy~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06641          10 EKIGKGSFGEVFKGIDNRTQKVVAI-KIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGS   88 (277)
T ss_pred             eeEeecCCeEEEEEEECCCCcEEEE-EEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCc
Confidence            3799999999999999889988884 544332    23468899999999999999999988664   8999999  566


Q ss_pred             hhHH-------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccccCC
Q psy6046          80 VYQA-------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELLGTP  145 (379)
Q Consensus        80 l~~~-------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~gt~  145 (379)
                      +...             .+.+.+..+.++|+.|++|+||+|+||+++.+   +.++|+|||++....... ......++.
T Consensus        89 l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~  165 (277)
T cd06641          89 ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEH---GEVKLADFGVAGQLTDTQIKRNTFVGTP  165 (277)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCC---CCEEEeecccceecccchhhhccccCCc
Confidence            6654             12222222333444999999999999999875   889999999987654332 223356788


Q ss_pred             CCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCC
Q psy6046         146 DYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM  210 (379)
Q Consensus       146 ~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  210 (379)
                      .|+||               |+||++|+|++|..||...+.......+.....+   .....++.++.+++.+||..+|.
T Consensus       166 ~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l~~~p~  242 (277)
T cd06641         166 FWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPP---TLEGNYSKPLKEFVEACLNKEPS  242 (277)
T ss_pred             cccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCC---CCCcccCHHHHHHHHHHccCChh
Confidence            89999               9999999999999999887766666665444322   22235789999999999999999


Q ss_pred             CCCCHHHHhcCccccCCc
Q psy6046         211 ERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       211 ~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||++.+++.||||.+..
T Consensus       243 ~Rp~~~~~l~~~~~~~~~  260 (277)
T cd06641         243 FRPTAKELLKHKFIVRFA  260 (277)
T ss_pred             hCcCHHHHHhCHHHhhhh
Confidence            999999999999997643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.98  E-value=2e-31  Score=248.02  Aligned_cols=205  Identities=21%  Similarity=0.205  Sum_probs=160.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhC-CCCCcceeeeecC--------cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLI-KVEPIEKYYSLDP--------EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l-~hpnIv~~~~~~~--------~~~~v~e~-   76 (379)
                      ..||+|+||.||+|.+..+++.+|+ |....  .....+.+|+.+++.+ +||||+++++++.        .+|+++|| 
T Consensus        24 ~~lg~g~~~~vy~~~~~~~~~~~~i-k~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~  102 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKKNGSKAAV-KILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELC  102 (286)
T ss_pred             eeeccCCCcEEEEEEECCCCceeEE-EeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeec
Confidence            4899999999999999999988874 44433  2235678899999999 6999999998752        27999999 


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       +|+|...                        .|+.|||+      .+|+||||||+||+++.+   +.++|+|||++..
T Consensus       103 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~nili~~~---~~~kl~dfg~~~~  173 (286)
T cd06638         103 NGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV------NKTIHRDVKGNNILLTTE---GGVKLVDFGVSAQ  173 (286)
T ss_pred             CCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh------CCccccCCCHHhEEECCC---CCEEEccCCceee
Confidence             5665432                        56677777      999999999999999986   7899999999987


Q ss_pred             eccCc-cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         132 ILDGI-EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       132 ~~~~~-~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ..... ......|++.|+||                    |+||++|+|++|+.||........+..+...... .....
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~  252 (286)
T cd06638         174 LTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPP-TLHQP  252 (286)
T ss_pred             cccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCC-cccCC
Confidence            64332 23345688889998                    8999999999999999877655544443332211 11112


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..++..+.+||.+||..||.+|||+.++++|+||
T Consensus       253 ~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         253 ELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             CCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            2467899999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.7e-31  Score=244.81  Aligned_cols=205  Identities=23%  Similarity=0.272  Sum_probs=162.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|.+..+++.+++ |....   .....+.+|+.+++.++||||+++++.+.+   +|+++|+  ++.+
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l   87 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAI-KVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSL   87 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEE-EEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcH
Confidence            5899999999999999999888774 44332   235678999999999999999999987654   8999999  4454


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|+.|||+      +||+|+||+|+||+++.+   +.+||+|||++....... ..
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~------~~i~h~dl~p~ni~i~~~---~~~~l~d~g~~~~~~~~~~~~  158 (262)
T cd06613          88 QDIYQVTRGPLSELQIAYVCRETLKGLAYLHE------TGKIHRDIKGANILLTED---GDVKLADFGVSAQLTATIAKR  158 (262)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh------CCceecCCChhhEEECCC---CCEEECccccchhhhhhhhcc
Confidence            443                     45666666      999999999999999985   889999999987654322 23


Q ss_pred             cccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-ccccCCCHHHHH
Q psy6046         139 RELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-ELFEDISPEAKD  199 (379)
Q Consensus       139 ~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~  199 (379)
                      ....++..|+||                  |+|+++|+|++|.+||.+.+.......+....+..+. .....++.++.+
T Consensus       159 ~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (262)
T cd06613         159 KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHD  238 (262)
T ss_pred             ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHH
Confidence            345678888888                  8999999999999999887766655555544322211 112346788999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      ||.+||..+|..|||+.+++.|||
T Consensus       239 li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         239 FIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             HHHHHcCCChhhCCCHHHHhcCCC
Confidence            999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0603|consensus

Probab=99.98  E-value=1.8e-32  Score=265.46  Aligned_cols=196  Identities=23%  Similarity=0.244  Sum_probs=164.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--CchhhHH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RPPVYQA   83 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~   83 (379)
                      -+|.|+||.|-.+.+..|++.++ +|++... .....+|+.++... +||||+++.+.+.+   .|++||+  +|.+.+.
T Consensus       329 ~~~~gs~s~~~~~~~~~t~~~~~-vkii~~~-~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~r  406 (612)
T KOG0603|consen  329 ELGEGSFSAVKYCESSPTDQEPA-VKIISKR-ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRR  406 (612)
T ss_pred             ccCCCCccceeeeeccccccchh-heecccc-ccccccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHH
Confidence            49999999999999999999988 5666554 33456677665554 59999999998876   8999999  5665555


Q ss_pred             -------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEe-ecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          84 -------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMM-GDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        84 -------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~-~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                                         .|+.|||.      +|++||||||+|||++ +.   ++++|+|||+++.....  ..+.|-
T Consensus       407 i~~~~~~~~e~~~w~~~lv~Av~~LH~------~gvvhRDLkp~NIL~~~~~---g~lrltyFG~a~~~~~~--~~tp~~  475 (612)
T KOG0603|consen  407 IRSKPEFCSEASQWAAELVSAVDYLHE------QGVVHRDLKPGNILLDGSA---GHLRLTYFGFWSELERS--CDTPAL  475 (612)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHh------cCeeecCCChhheeecCCC---CcEEEEEechhhhCchh--hcccch
Confidence                               67888888      9999999999999995 43   89999999999876544  455677


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |..|.||               |||+++|+||+|+.||...... +++.++..+...      ..+|.++++||++||++
T Consensus       476 t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s------~~vS~~AKdLl~~LL~~  549 (612)
T KOG0603|consen  476 TLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFS------ECVSDEAKDLLQQLLQV  549 (612)
T ss_pred             hhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCccc------cccCHHHHHHHHHhccC
Confidence            8899999               9999999999999999765554 777777766544      36999999999999999


Q ss_pred             CCCCCCCHHHHhcCccc
Q psy6046         208 NPMERMTAKEALKHPWL  224 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~  224 (379)
                      ||.+||++.+++.||||
T Consensus       550 dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  550 DPALRLGADEIGAHPWF  566 (612)
T ss_pred             ChhhCcChhhhccCcch
Confidence            99999999999999999

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.98  E-value=1.7e-31  Score=251.82  Aligned_cols=210  Identities=21%  Similarity=0.252  Sum_probs=156.1

Q ss_pred             cCcCCCCceEEEEEEEcC--CCcEEEEEEecc-----cccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT--TKREVVQWKERN-----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..  +++.||++....     ......+.+|+.+++.++||||+++++++.+     +|+++||
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   85 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDY   85 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeC
Confidence            469999999999999988  788888543333     1224568899999999999999999998653     7999999


Q ss_pred             -CchhhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccc
Q psy6046          77 -RPPVYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEIS  129 (379)
Q Consensus        77 -~g~l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a  129 (379)
                       .+.+...                         .|+.|||+      .||+||||||+||+++.++ .++.+||+|||++
T Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          86 AEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS------NWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             CCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh------CCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence             4333221                         56677777      9999999999999998721 1388999999999


Q ss_pred             eeeccCc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHH---------HHHHHHh
Q psy6046         130 RVILDGI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSE---------TFRNISK  180 (379)
Q Consensus       130 ~~~~~~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~---------~~~~i~~  180 (379)
                      .......    .....++++.|+||                |+||++|+|++|++||.+.....         .+..+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (316)
T cd07842         160 RLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFE  239 (316)
T ss_pred             cccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHH
Confidence            8654322    12345678889999                99999999999999997654321         1111100


Q ss_pred             --------------------------CCCCCCc-------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         181 --------------------------AQLDFPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       181 --------------------------~~~~~~~-------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                                ....++.       ..+...+..+.++|.+||..||++|||+.+++.||||
T Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         240 VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             HhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence                                      0001110       0011567889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.98  E-value=3e-31  Score=247.59  Aligned_cols=206  Identities=19%  Similarity=0.191  Sum_probs=162.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhC-CCCCcceeeeecC--------cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLI-KVEPIEKYYSLDP--------EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l-~hpnIv~~~~~~~--------~~~~v~e~-   76 (379)
                      ..||+|+||.||+|.+..+|+.+| +|.....  ....+.+|+.+++.+ +|||++++++++.        .+|+++|| 
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~a-ik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~  106 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAA-VKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELC  106 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEE-EEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEEC
Confidence            389999999999999999998888 4554432  235678899999999 7999999998753        27899999 


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       +|+|.+.                        .|+.|||.      .|++||||||+||+++.+   +.+||+|||++..
T Consensus       107 ~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~dlkp~nili~~~---~~~kl~dfg~~~~  177 (291)
T cd06639         107 NGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN------NRIIHRDVKGNNILLTTE---GGVKLVDFGVSAQ  177 (291)
T ss_pred             CCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHEEEcCC---CCEEEeecccchh
Confidence             6666543                        45666666      999999999999999885   7899999999876


Q ss_pred             eccCc-cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         132 ILDGI-EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       132 ~~~~~-~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ..... ......|+..|+||                    |+||++|+|++|++||......+.+..+........ ...
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~  256 (291)
T cd06639         178 LTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTL-LHP  256 (291)
T ss_pred             cccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCC-Ccc
Confidence            54322 22334677788887                    899999999999999988776666655554432211 112


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ..++..+.+||.+||..+|++||++.+++.||||+
T Consensus       257 ~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         257 EKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             cccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence            34678899999999999999999999999999994

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.98  E-value=2.3e-31  Score=249.02  Aligned_cols=209  Identities=19%  Similarity=0.279  Sum_probs=168.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      .||+|+||.||+|.+..+|+.+|+++....  .....+.+|+.+++.++||||+++++.+..   .|+++||  ++.+.+
T Consensus        27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~  106 (292)
T cd06657          27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTD  106 (292)
T ss_pred             HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHH
Confidence            699999999999999999999886554322  233568899999999999999999987654   8999999  555544


Q ss_pred             H-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccccc
Q psy6046          83 A-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRELL  142 (379)
Q Consensus        83 ~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~  142 (379)
                      .                   .++.|||.      .|++||||+|+||+++.+   +.++|+|||++....... ......
T Consensus       107 ~~~~~~~~~~~~~~~~~ql~~~l~~lH~------~givH~dl~p~Nilv~~~---~~~~l~dfg~~~~~~~~~~~~~~~~  177 (292)
T cd06657         107 IVTHTRMNEEQIAAVCLAVLKALSVLHA------QGVIHRDIKSDSILLTHD---GRVKLSDFGFCAQVSKEVPRRKSLV  177 (292)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CCEEEcccccceecccccccccccc
Confidence            4                   56777777      999999999999999975   789999999987654332 233456


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |++.|+||               |+|+++|+|++|.+||.+....+....+....... ......+++.+.+++.+||..
T Consensus       178 ~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~  256 (292)
T cd06657         178 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPK-LKNLHKVSPSLKGFLDRLLVR  256 (292)
T ss_pred             cCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcc-cCCcccCCHHHHHHHHHHHhC
Confidence            88899999               99999999999999998877766666554432211 112245789999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|.+||++.+++.||||....
T Consensus       257 ~P~~R~~~~~ll~~~~~~~~~  277 (292)
T cd06657         257 DPAQRATAAELLKHPFLAKAG  277 (292)
T ss_pred             CcccCcCHHHHhcChHHhccC
Confidence            999999999999999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.98  E-value=2.9e-31  Score=252.82  Aligned_cols=223  Identities=24%  Similarity=0.296  Sum_probs=167.3

Q ss_pred             ccCcCCCCceEEEEEEEcCC--CcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecC-------cceEE
Q psy6046           8 SHVGGNRARSSCSRKPEKTT--KREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDP-------EPLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t--g~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~-------~~~~v   73 (379)
                      ..+||+|+||.||+|++..+  +..+|+++....    .....+.+|+.+++.+. ||||+++++...       ..|++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~   84 (332)
T cd07857           5 IKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLY   84 (332)
T ss_pred             EEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEE
Confidence            35799999999999999888  888885443322    11346788999999995 999999987521       26788


Q ss_pred             eeC-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          74 LNP-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        74 ~e~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      +++ ++.|.+.                    .|+.|||.      .||+||||||+||+++.+   +.+||+|||+++..
T Consensus        85 ~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~givH~dlkp~Nili~~~---~~~kl~Dfg~a~~~  155 (332)
T cd07857          85 EELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHS------ANVLHRDLKPGNLLVNAD---CELKICDFGLARGF  155 (332)
T ss_pred             EecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHeEEcCC---CCEEeCcCCCceec
Confidence            888 5545443                    56777777      999999999999999885   88999999999865


Q ss_pred             ccCc-----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC--------
Q psy6046         133 LDGI-----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL--------  183 (379)
Q Consensus       133 ~~~~-----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~--------  183 (379)
                      ....     ......||+.|+||                |+||++|+|++|.+||.+.+....+..+.....        
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  235 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLS  235 (332)
T ss_pred             ccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            4322     12345789999999                999999999999999987665444433222100        


Q ss_pred             -------------------CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccccCCCCC
Q psy6046         184 -------------------DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSC  239 (379)
Q Consensus       184 -------------------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~~~~~~  239 (379)
                                         ......++..+..+.+|+.+||..||.+|||+.+++.|||++..+.....+.|...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~~~~~~~~~~  310 (332)
T cd07857         236 RIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDPDDEPVCQKP  310 (332)
T ss_pred             hhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCcccccccccc
Confidence                               00011234568899999999999999999999999999999877755444444433

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2e-31  Score=246.75  Aligned_cols=208  Identities=24%  Similarity=0.329  Sum_probs=165.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC---CCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK---VEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~---hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..||+|+||.||+|.+..+|+.+| +|....    .....+.+|+.+++.++   |||++++++.+.+   +|+++||  
T Consensus         7 ~~l~~g~~g~v~~~~~~~~~~~~~-iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPTGRVVA-LKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAE   85 (277)
T ss_pred             hheeccCCceEEEEEEcCCCcEEE-EEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCC
Confidence            479999999999999999998888 454432    23456889999999997   9999999987654   7899999  


Q ss_pred             CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          77 RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      +++|...                   .++.|||+      .||+||||+|+||+++++   +.++|+|||++....... 
T Consensus        86 ~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~------~~i~H~dl~p~ni~i~~~---~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06917          86 GGSVRTLMKAGPIAEKYISVIIREVLVALKYIHK------VGVIHRDIKAANILVTNT---GNVKLCDFGVAALLNQNSS  156 (277)
T ss_pred             CCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCcCHHHEEEcCC---CCEEEccCCceeecCCCcc
Confidence            5555544                   56777777      999999999999999985   899999999998765433 


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......|+..|+||                |+|+++|+|++|.+||.+.+.......+....  .+......++.++.++
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  234 (277)
T cd06917         157 KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSK--PPRLEDNGYSKLLREF  234 (277)
T ss_pred             ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCC--CCCCCcccCCHHHHHH
Confidence            23345688889999                99999999999999998876655444433321  1111112378999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+||..||++||++.+++.||||++..
T Consensus       235 i~~~l~~~p~~R~~~~~il~~~~~~~~~  262 (277)
T cd06917         235 VAACLDEEPKERLSAEELLKSKWIKAHS  262 (277)
T ss_pred             HHHHcCCCcccCcCHHHHhhChHhhccc
Confidence            9999999999999999999999997765

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.9e-31  Score=244.70  Aligned_cols=205  Identities=22%  Similarity=0.277  Sum_probs=161.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhC-CCCCcceeeeecCc---------ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---------PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---------~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..+++.+++ |.....  ..+.+.+|+.+++.+ +||||+++++++.+         +|+++||
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~-k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~   90 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAI-KIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMEL   90 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEE-EEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEc
Confidence            5899999999999999988888774 544432  235688999999999 69999999998642         6899999


Q ss_pred             --CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          77 --RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        77 --~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                        ++.+.+.                        .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++.
T Consensus        91 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~------~~i~H~~l~p~ni~~~~~---~~~~l~d~~~~~  161 (275)
T cd06608          91 CGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE------NKVIHRDIKGQNILLTKN---AEVKLVDFGVSA  161 (275)
T ss_pred             CCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc------CCcccCCCCHHHEEEccC---CeEEECCCccce
Confidence              4444332                        45666666      999999999999999985   889999999987


Q ss_pred             eeccCc-cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc
Q psy6046         131 VILDGI-EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       131 ~~~~~~-~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~  189 (379)
                      ...... ......|++.|+||                    |+|+++|+|++|++||...........+........ ..
T Consensus       162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~  240 (275)
T cd06608         162 QLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTL-KS  240 (275)
T ss_pred             ecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCC-Cc
Confidence            654322 23345688889888                    999999999999999987666555555555432211 11


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ...++..+.+||.+||..||.+|||+.+++.|||+
T Consensus       241 ~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         241 PENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             hhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            12478899999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.98  E-value=1.6e-30  Score=245.71  Aligned_cols=205  Identities=18%  Similarity=0.191  Sum_probs=163.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      .||+|+||.||+|++..+|..+++++....     .....+.+|+.+++.++|||++++++++.+   .|+++|| .|.+
T Consensus        28 ~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l  107 (313)
T cd06633          28 EIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSA  107 (313)
T ss_pred             eeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCCCCH
Confidence            699999999999999999988885443221     122457899999999999999999998665   8899999 4444


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ...                     .|+.|||+      .|++||||+|+||+++.+   +.+||+|||++....   ...
T Consensus       108 ~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~------~gi~H~dl~p~nili~~~---~~~kL~dfg~~~~~~---~~~  175 (313)
T cd06633         108 SDLLEVHKKPLQEVEIAAITHGALQGLAYLHS------HNMIHRDIKAGNILLTEP---GQVKLADFGSASKSS---PAN  175 (313)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCChhhEEECCC---CCEEEeecCCCcccC---CCC
Confidence            433                     45667776      999999999999999875   889999999986432   233


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ...|+..|+||                  |+||++|+|++|.+||.+.+.......+.....  +......++..+++|+
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li  253 (313)
T cd06633         176 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDS--PTLQSNEWTDSFRGFV  253 (313)
T ss_pred             CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCC--CCCCccccCHHHHHHH
Confidence            45678888888                  999999999999999988776666655554332  2222345788999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..+|.+||++.+++.||||+...
T Consensus       254 ~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         254 DYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             HHHccCChhhCcCHHHHhcCcccCCCc
Confidence            999999999999999999999998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0666|consensus

Probab=99.98  E-value=1.4e-32  Score=244.99  Aligned_cols=213  Identities=21%  Similarity=0.276  Sum_probs=160.0

Q ss_pred             CcCCCCceEEEEEEEcCCCc----EEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKR----EVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~----~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~-   76 (379)
                      .||+|+||.||+|..+.+..    .+|++|+...++    ....-||+.++|.|+|||++.+..++.+    .++++|| 
T Consensus        31 ~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYA  110 (438)
T KOG0666|consen   31 KIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYA  110 (438)
T ss_pred             eecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhh
Confidence            58999999999996655533    467655544422    3568899999999999999998887554    7899999 


Q ss_pred             CchhhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeecccce
Q psy6046          77 RPPVYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISR  130 (379)
Q Consensus        77 ~g~l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~  130 (379)
                      .-+|+..                         .++.|||+      +=|+||||||.|||+..+++ .|.+||+|||+++
T Consensus       111 EhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~------NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR  184 (438)
T KOG0666|consen  111 EHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS------NWVLHRDLKPANILVMGDGPERGRVKIADLGLAR  184 (438)
T ss_pred             hhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh------hheeeccCCcceEEEeccCCccCeeEeecccHHH
Confidence            4444443                         56777777      99999999999999998754 6899999999999


Q ss_pred             eeccCc----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh---------HHHHHHHHhC
Q psy6046         131 VILDGI----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD---------SETFRNISKA  181 (379)
Q Consensus       131 ~~~~~~----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~---------~~~~~~i~~~  181 (379)
                      .+.+.-    .....+-|.+|.||                ++|||+.||+|-.+-|.+...         .+++.+|..-
T Consensus       185 ~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~v  264 (438)
T KOG0666|consen  185 LFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEV  264 (438)
T ss_pred             HhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHH
Confidence            874321    12345678899999                999999999999999976422         2344444321


Q ss_pred             CCC-----------CCc----------c------------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         182 QLD-----------FPD----------E------------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       182 ~~~-----------~~~----------~------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      --.           .|+          .            .+..-++.+.+|+.+||..||.+|+|++++|+|+||....
T Consensus       265 LG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~  344 (438)
T KOG0666|consen  265 LGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDP  344 (438)
T ss_pred             cCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCC
Confidence            100           010          0            1122366799999999999999999999999999998764

>KOG0608|consensus

Probab=99.98  E-value=1.3e-32  Score=264.48  Aligned_cols=214  Identities=21%  Similarity=0.231  Sum_probs=173.6

Q ss_pred             cCcc-CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           6 MASH-VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         6 ~~~~-~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      |.+- -||-|+||+|+++....|...|| .|.+..      .+...++.|-+||..-+.+.||++|+.|++   +|.||+
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYA-mKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYA-MKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHH-HhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            4443 69999999999999999977777 454433      445678999999999999999999999887   999999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |  ||++...                    .|+.+.|.      .|+|||||||+|||+|.+   |++||+|||+|+.+.
T Consensus       710 YIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHk------mGFIHRDiKPDNILIDrd---GHIKLTDFGLCTGfR  780 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHK------MGFIHRDIKPDNILIDRD---GHIKLTDFGLCTGFR  780 (1034)
T ss_pred             ccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh------ccceecccCccceEEccC---Cceeeeeccccccce
Confidence            9  8887776                    67888888      999999999999999997   999999999997542


Q ss_pred             cC---------------------------c----------------cccccccCCCCcch---------------HHHHH
Q psy6046         134 DG---------------------------I----------------EIRELLGTPDYVGK---------------SLGVT  155 (379)
Q Consensus       134 ~~---------------------------~----------------~~~~~~gt~~y~aP---------------SlGvi  155 (379)
                      ..                           .                .....+||+.|+||               |.|||
T Consensus       781 WTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvi  860 (1034)
T KOG0608|consen  781 WTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVI  860 (1034)
T ss_pred             eccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHH
Confidence            10                           0                01236899999999               99999


Q ss_pred             HHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCC---CHHHHhcCccccCCccc
Q psy6046         156 AYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       156 l~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---t~~e~l~hp~~~~~~~~  230 (379)
                      ||+|+.|++||.+.++-+...++.+-.-.+.-....++|+++.+||.++.+ +++.|.   .++|+..||||+...+.
T Consensus       861 l~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~kLc~-sad~RLGkng~d~vKaHpfFkgIDfs  937 (1034)
T KOG0608|consen  861 LYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQKLCC-SADSRLGKNGADQVKAHPFFKGIDFS  937 (1034)
T ss_pred             HHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHHHHhc-ChhhhhcccchhhhhcCccccccchH
Confidence            999999999999888777666655433222222345899999999999765 699999   47889999999988754

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.98  E-value=3e-31  Score=247.32  Aligned_cols=209  Identities=25%  Similarity=0.277  Sum_probs=161.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~--~   77 (379)
                      +.||.|++|.||+|.+..+++.+| +|.....    ....+.+|+++++.++||||+++++++.+     +|+++||  +
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   85 (287)
T cd06621           7 SRLGEGAGGSVTKCRLKNTGMIFA-LKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEG   85 (287)
T ss_pred             EEeccCCceEEEEEEECCCCeEEE-EEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCC
Confidence            479999999999999999988888 4544321    23568999999999999999999987532     7899999  5


Q ss_pred             chhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          78 PPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        78 g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |+|.+.                        .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++....
T Consensus        86 ~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~------~~i~H~dl~~~nil~~~~---~~~~l~dfg~~~~~~  156 (287)
T cd06621          86 GSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS------RKIIHRDIKPSNILLTRK---GQVKLCDFGVSGELV  156 (287)
T ss_pred             CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEecC---CeEEEeecccccccc
Confidence            555332                        46777777      999999999999999875   789999999987543


Q ss_pred             cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC-----ChHHHHHHHHhCCCCC-Ccccc--
Q psy6046         134 DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE-----TDSETFRNISKAQLDF-PDELF--  190 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~-----~~~~~~~~i~~~~~~~-~~~~~--  190 (379)
                      ... .....++..|+||               |+|+++|+|++|..||...     ...+....+....... +....  
T Consensus       157 ~~~-~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (287)
T cd06621         157 NSL-AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNG  235 (287)
T ss_pred             ccc-cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCC
Confidence            321 2344578889999               9999999999999999765     2344444444322211 11111  


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+++.+.+||.+||..+|.+|||+.|++.||||....
T Consensus       236 ~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~  273 (287)
T cd06621         236 IKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQM  273 (287)
T ss_pred             CchHHHHHHHHHHHcCCCcccCCCHHHHHhCccccccc
Confidence            23568899999999999999999999999999996543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.98  E-value=3e-31  Score=244.99  Aligned_cols=200  Identities=24%  Similarity=0.272  Sum_probs=150.3

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--CchhhHH-
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RPPVYQA-   83 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~-   83 (379)
                      ||+|+||.||+++++.+|..+| +|.........  .|+.....+ +||||+++++.+..   +|+++||  +|+|.+. 
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~-~k~~~~~~~~~--~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l  100 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFV-QKIIKAKNFNA--IEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLL  100 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEE-EEEEehhhcch--hhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHH
Confidence            7999999999999999998887 45544322211  133333322 69999999988654   8999999  6777665 


Q ss_pred             -------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC-cEEEeecccceeeccCcccccccc
Q psy6046          84 -------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC-DIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        84 -------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~-~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                                         .|+.|||+      .|++||||||+||+++.+   + .++|+|||++......   ....|
T Consensus       101 ~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~nil~~~~---~~~~~l~dfg~~~~~~~~---~~~~~  168 (267)
T PHA03390        101 KKEGKLSEAEVKKIIRQLVEALNDLHK------HNIIHNDIKLENVLYDRA---KDRIYLCDYGLCKIIGTP---SCYDG  168 (267)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHEEEeCC---CCeEEEecCccceecCCC---ccCCC
Confidence                               45666666      999999999999999986   5 8999999999765432   23467


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHH-HHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSET-FRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      ++.|+||               |+|+++|+|++|..||........ ...+.... ..+...++.+|+.+.+||.+||+.
T Consensus       169 ~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~  247 (267)
T PHA03390        169 TLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QKKLPFIKNVSKNANDFVQSMLKY  247 (267)
T ss_pred             CCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cccCCcccccCHHHHHHHHHHhcc
Confidence            8899999               999999999999999986543321 11111111 112223346899999999999999


Q ss_pred             CCCCCCC-HHHHhcCccccC
Q psy6046         208 NPMERMT-AKEALKHPWLMN  226 (379)
Q Consensus       208 dP~~Rpt-~~e~l~hp~~~~  226 (379)
                      +|.+||+ ++++|+||||.+
T Consensus       248 ~p~~R~~~~~~~l~h~~~~~  267 (267)
T PHA03390        248 NINYRLTNYNEIIKHPFLKI  267 (267)
T ss_pred             ChhhCCchHHHHhcCCcccC
Confidence            9999996 699999999963

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.98  E-value=2.1e-31  Score=250.55  Aligned_cols=207  Identities=19%  Similarity=0.200  Sum_probs=158.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--c--cchHHHHHHHHHHhCCCCCcceeeeecCc-----------ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--S--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~v   73 (379)
                      ..||+|+||.||+|.+..+++.+|+++....  .  ....+.+|+++++.++||||+++++++.+           +|++
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv   93 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMV   93 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEE
Confidence            4799999999999999999999885443322  1  12357899999999999999999876432           5889


Q ss_pred             eeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|| .+.+...                     .|+.|||+      +||+||||||+||+++++   +.++|+|||++..
T Consensus        94 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~  164 (311)
T cd07866          94 TPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHE------NHILHRDIKAANILIDNQ---GILKIADFGLARP  164 (311)
T ss_pred             EecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CCEEECcCccchh
Confidence            998 3333222                     67778887      999999999999999985   8999999999976


Q ss_pred             eccCcc------------ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC
Q psy6046         132 ILDGIE------------IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL  183 (379)
Q Consensus       132 ~~~~~~------------~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~  183 (379)
                      ......            .....+++.|+||                |+||++|+|++|++||.+.+.......+.....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~  244 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCG  244 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            532211            1223567889999                999999999999999998877666555433211


Q ss_pred             CCC--------------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFP--------------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~--------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ..+                          ...+..+++.+.+||.+||..||.+|||+.+++.||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         245 TPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             CCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            100                          01123456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.97  E-value=3.5e-31  Score=242.23  Aligned_cols=202  Identities=18%  Similarity=0.159  Sum_probs=164.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc---cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN---VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ...||+|+||.||+|++..+++.+|++....   ....+.+.+|+.+++.++||||+++++.+.+   +|+++||  +|+
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   84 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGD   84 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCc
Confidence            4589999999999999999999988543322   1234568899999999999999999988664   8999999  566


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      +.+.                      .|+.|||+      +||+|+||||+||+++++   +.++|+|||.+....... 
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~------~~i~H~dl~p~nili~~~---~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          85 LMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHE------KRVLHRDIKSKNIFLTQN---GKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh------CCcccCCCCcceEEECCC---CcEEEcccCcceeeccccc
Confidence            5543                      45566665      999999999999999875   889999999998764332 


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ......|++.|+||               |+|+++|+|++|..||...+.......+..+.....+   ..++..+.+||
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li  232 (255)
T cd08219         156 YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLP---SHYSYELRSLI  232 (255)
T ss_pred             ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCC---cccCHHHHHHH
Confidence            23346688999999               9999999999999999988877777777666544222   35789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy6046         202 AKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||..||.+|||+.+++.-
T Consensus       233 ~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         233 KQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHhCCcccCCCHHHHhhc
Confidence            99999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=5.4e-31  Score=245.14  Aligned_cols=209  Identities=19%  Similarity=0.229  Sum_probs=161.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||+||+|.+..+|+.+|++.....   .....+.+|+++++.++||||+++++.+..   +|+++||  +|+|
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSL   90 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCH
Confidence            4799999999999999999988885332221   123568899999999999999999988665   8999999  5666


Q ss_pred             hHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          81 YQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        81 ~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      ...                    .++.|||+     .+|++||||||+||+++.+   +.++|+|||++...... ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~-----~~~i~H~dl~p~nil~~~~---~~~~l~d~gl~~~~~~~-~~~~  161 (284)
T cd06620          91 DRIYKKGGPIPVEILGKIAVAVVEGLTYLYN-----VHRIMHRDIKPSNILVNSR---GQIKLCDFGVSGELINS-IADT  161 (284)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-----hcCeeccCCCHHHEEECCC---CcEEEccCCcccchhhh-ccCc
Confidence            443                    45666664     2689999999999999875   88999999998755332 2344


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH-----------HHHHHHHhCCCCCCcccccCCC
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS-----------ETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~-----------~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .+|+..|+||               |+||++|+|++|..||......           +....+........  ....++
T Consensus       162 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  239 (284)
T cd06620         162 FVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRL--PSSDFP  239 (284)
T ss_pred             cccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCC--CchhcC
Confidence            6789999999               9999999999999999765431           23333333221111  112378


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .++.+|+.+||..||.+|||+.|+++||||.+..
T Consensus       240 ~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         240 EDLRDFVDACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            8999999999999999999999999999997654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=2.4e-31  Score=247.45  Aligned_cols=207  Identities=23%  Similarity=0.308  Sum_probs=161.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g   78 (379)
                      .+.||+|+||.||+|.+..+++.||+ |....     .....+.+|+++++.++||||+++++++.+   .|+++|| .+
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~v~v-K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~   84 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAI-KKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVER   84 (288)
T ss_pred             EEEecccCCeeEEEEEeCCCCcEEEE-ehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCC
Confidence            35799999999999999999988885 44332     224678999999999999999999988754   8999999 33


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      .+...                     .|+.|||.      .|++||||+|+||+++.+   +.+||+|||++....... 
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~dl~~~ni~~~~~---~~~kl~d~g~~~~~~~~~~  155 (288)
T cd07833          85 TLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHS------HNIIHRDIKPENILVSES---GVLKLCDFGFARALRARPA  155 (288)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEECCC---CCEEEEeeecccccCCCcc
Confidence            32221                     56777777      999999999999999985   899999999998765443 


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC---------------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD---------------  184 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~---------------  184 (379)
                       ......+++.|+||                |+|+++|+|++|.+||.+.+..+.+..+......               
T Consensus       156 ~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T cd07833         156 SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRF  235 (288)
T ss_pred             ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccc
Confidence             33456788889998                9999999999999999877665544433221100               


Q ss_pred             ----CCc---------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 ----FPD---------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ----~~~---------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                          ++.         .....+++++.+||.+||..+|++|||+++++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         236 AGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             cccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence                000         0112348999999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.97  E-value=5.7e-31  Score=243.00  Aligned_cols=203  Identities=18%  Similarity=0.162  Sum_probs=158.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcE-EEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cce
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKRE-VVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPL   71 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~-~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~   71 (379)
                      .+++||+|+||.||+|++..++.. .+++|....     ...+.+.+|+.+++.++||||+++++.+.         ..+
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   82 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPV   82 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcE
Confidence            356899999999999998888764 233565432     23456889999999999999999988642         257


Q ss_pred             EEeeC--CchhhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          72 LGLNP--RPPVYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        72 ~v~e~--~g~l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                      +++||  +|++...                          .|+.|||.      +||+||||||+||+++.+   +.+||
T Consensus        83 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl  153 (272)
T cd05075          83 VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS------KSFIHRDLAARNCMLNEN---MNVCV  153 (272)
T ss_pred             EEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH------CCeeccccchhheEEcCC---CCEEE
Confidence            88998  5554332                          56777777      999999999999999875   88999


Q ss_pred             eecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         124 CDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       124 ~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +|||+++.......   .....+++.|+||               |+|+++|+|++ |.+||.+....+....+..+...
T Consensus       154 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~  233 (272)
T cd05075         154 ADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRL  233 (272)
T ss_pred             CCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC
Confidence            99999987643321   1122356678888               99999999999 89999988887777777765432


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..   ...++..+.++|.+||..||++|||+.+++++
T Consensus       234 ~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         234 KQ---PPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             CC---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            21   23578999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG1035|consensus

Probab=99.97  E-value=2.3e-31  Score=272.11  Aligned_cols=205  Identities=23%  Similarity=0.320  Sum_probs=161.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc-----------------
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------------   69 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------------   69 (379)
                      +||+||||.||+|+++-+|..||++|+.-.   .....+.+|+..|.+|+|||||+||..+.+                 
T Consensus       486 lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei~~~~~~~  565 (1351)
T KOG1035|consen  486 LLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEIVASDSES  565 (1351)
T ss_pred             HhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccccccccchhh
Confidence            999999999999999999999997776554   223569999999999999999999984321                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy6046          70 --------------------------------------------------------------------------------   69 (379)
Q Consensus        70 --------------------------------------------------------------------------------   69 (379)
                                                                                                      
T Consensus       566 ~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~~~~d~~  645 (1351)
T KOG1035|consen  566 RSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGSVILDDT  645 (1351)
T ss_pred             hcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCccccCcc
Confidence                                                                                            


Q ss_pred             -------------------------ceEEeeC--C---------chh----------hHH--HHHHHHhcccCCCCCCeE
Q psy6046          70 -------------------------PLLGLNP--R---------PPV----------YQA--SATTKAGSVLFPPLMDFI  101 (379)
Q Consensus        70 -------------------------~~~v~e~--~---------g~l----------~~~--~al~~lh~~~~~h~~~iv  101 (379)
                                               +||-|||  .         +..          |..  .|+.|+|+      +|||
T Consensus       646 ~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~------~giI  719 (1351)
T KOG1035|consen  646 SESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHD------QGII  719 (1351)
T ss_pred             hhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHh------Ccee
Confidence                                     1222222  0         000          000  56888888      9999


Q ss_pred             eCCCCCCcEEEeecCCCCcEEEeecccceeec-------------------cCccccccccCCCCcch------------
Q psy6046         102 FFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-------------------DGIEIRELLGTPDYVGK------------  150 (379)
Q Consensus       102 HrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-------------------~~~~~~~~~gt~~y~aP------------  150 (379)
                      ||||||.||+++++   +.|||+|||+|+...                   +....++.+||..|+||            
T Consensus       720 HRDLKP~NIFLd~~---~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn  796 (1351)
T KOG1035|consen  720 HRDLKPRNIFLDSR---NSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYN  796 (1351)
T ss_pred             eccCCcceeEEcCC---CCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhccccccccc
Confidence            99999999999976   899999999998621                   01134568999999999            


Q ss_pred             ------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         151 ------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       151 ------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                            |||||++||+   .||.. .....++..++++.++++..++..--+.-..+|+.||..||.+||||.|+|++.|
T Consensus       797 ~KiDmYSLGIVlFEM~---yPF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~l  873 (1351)
T KOG1035|consen  797 SKIDMYSLGIVLFEML---YPFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSEL  873 (1351)
T ss_pred             chhhhHHHHHHHHHHh---ccCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhccC
Confidence                  9999999997   45754 3445678888888888886555555677788999999999999999999999999


Q ss_pred             ccC
Q psy6046         224 LMN  226 (379)
Q Consensus       224 ~~~  226 (379)
                      |-.
T Consensus       874 lpp  876 (1351)
T KOG1035|consen  874 LPP  876 (1351)
T ss_pred             CCc
Confidence            953

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=2.1e-31  Score=244.82  Aligned_cols=212  Identities=23%  Similarity=0.309  Sum_probs=163.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|.++.+++.+|++.....   .....+.+|+.+++.++||||+++++.+..   +|+++|+  +++|
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   86 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSL   86 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcH
Confidence            4799999999999999999988885433222   223568899999999999999999887654   8899999  4555


Q ss_pred             hHH---------------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccC
Q psy6046          81 YQA---------------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT  144 (379)
Q Consensus        81 ~~~---------------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt  144 (379)
                      .+.               .+.+.+..+.++|+ .|++|+||||+||+++.+   +.++|+|||.+........ ....++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~---~~~~l~d~g~~~~~~~~~~-~~~~~~  162 (265)
T cd06605          87 DKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSR---GQIKLCDFGVSGQLVNSLA-KTFVGT  162 (265)
T ss_pred             HHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCC---CCEEEeecccchhhHHHHh-hcccCC
Confidence            544               22334445555677 999999999999999985   8899999999876543222 226788


Q ss_pred             CCCcch---------------HHHHHHHHHhhCCCCCCCC-----ChHHHHHHHHhCCC-CCCcccccCCCHHHHHHHHH
Q psy6046         145 PDYVGK---------------SLGVTAYVLLTGFSPFGGE-----TDSETFRNISKAQL-DFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       145 ~~y~aP---------------SlGvil~~lltg~~Pf~~~-----~~~~~~~~i~~~~~-~~~~~~~~~~s~~~~~li~~  203 (379)
                      ..|+||               |+|+++|+|++|..||...     ...+....+..... ..+.   ..+++++.++|.+
T Consensus       163 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~  239 (265)
T cd06605         163 SSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPS---GKFSPDFQDFVNL  239 (265)
T ss_pred             hhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCCh---hhcCHHHHHHHHH
Confidence            889999               9999999999999999754     23344444443322 1111   1278999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCC
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||..||.+|||+.+++.||||+..
T Consensus       240 ~l~~~p~~Rpt~~~ll~~~~~~~~  263 (265)
T cd06605         240 CLIKDPRERPSYKELLEHPFIKKY  263 (265)
T ss_pred             HcCCCchhCcCHHHHhhCchhhcc
Confidence            999999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.9e-31  Score=240.12  Aligned_cols=200  Identities=28%  Similarity=0.392  Sum_probs=166.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ||+|+||.||+|.+..+++.+|+ |.....      ....+..|+.+++.++||||+++++.+.+   +|+++|+  +++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAM-KVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEE-EEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            79999999999999988988884 443321      23468899999999999999999887654   7999999  666


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      |.+.                    .|+.|+|+      .+++|+||+|+||+++.+   +.++|+|||.+...... ...
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~------~~~~H~~l~p~ni~~~~~---~~~~l~d~~~~~~~~~~~~~~  150 (250)
T cd05123          80 LFSHLSKEGRFSEERARFYAAEIVLALEYLHS------LGIIYRDLKPENILLDAD---GHIKLTDFGLAKELSSEGSRT  150 (250)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCcceEEEcCC---CcEEEeecCcceecccCCCcc
Confidence            6654                    56777777      999999999999999986   88999999999876443 234


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ....++..|+||               |+|+++|+|++|..||...+.......+......++.    .++..+.++|.+
T Consensus       151 ~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~i~~  226 (250)
T cd05123         151 NTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPE----FLSPEARDLISG  226 (250)
T ss_pred             cCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCC----CCCHHHHHHHHH
Confidence            456678889999               8999999999999999888777777777766555554    468999999999


Q ss_pred             hcccCCCCCCCH---HHHhcCccc
Q psy6046         204 ILIKNPMERMTA---KEALKHPWL  224 (379)
Q Consensus       204 ~L~~dP~~Rpt~---~e~l~hp~~  224 (379)
                      ||..||.+|||+   +++++||||
T Consensus       227 ~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         227 LLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             HhcCCHhhCCCcccHHHHHhCCCC
Confidence            999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=6.3e-31  Score=241.31  Aligned_cols=205  Identities=23%  Similarity=0.343  Sum_probs=160.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+.||+|+||.||+|.+..+++.+++ |.....     ....+.+|+.+++.++||||+++++...+   +++++||  +
T Consensus         5 ~~~lg~G~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLDTGELMAV-KEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSG   83 (264)
T ss_pred             eeEeecCCCcEEEEEEECCCCcEEEE-EEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCC
Confidence            35799999999999999989988884 443321     34568999999999999999999998654   8999999  5


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      ++|.+.                    .|+.|||+      .||+|+||+|+||++++.   +.+||+|||++........
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~------~~i~H~dl~~~nil~~~~---~~~kl~d~g~~~~~~~~~~  154 (264)
T cd06626          84 GTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHS------HGIVHRDIKPANIFLDHN---GVIKLGDFGCAVKLKNNTT  154 (264)
T ss_pred             CcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEcccccccccCCCCC
Confidence            656554                    45666666      999999999999999985   8999999999987643322


Q ss_pred             -----ccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCC-CCCCcccccC
Q psy6046         138 -----IRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQ-LDFPDELFED  192 (379)
Q Consensus       138 -----~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~-~~~~~~~~~~  192 (379)
                           .....+++.|+||                  |+|+++|+|++|+.||.+.. .......+..+. ..+|.  +..
T Consensus       155 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (264)
T cd06626         155 TMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPD--SLQ  232 (264)
T ss_pred             cccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCc--ccc
Confidence                 1234577788888                  89999999999999997653 333333333322 12222  234


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +++.+.+||.+||..+|.+|||+.+++.|||+
T Consensus       233 ~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         233 LSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             cCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            68999999999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.97  E-value=5.7e-31  Score=240.41  Aligned_cols=200  Identities=14%  Similarity=0.100  Sum_probs=155.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||.||+|++..+|+.+|++.....   .....+.+|+++++.++||||+++++++..   +|+++||  +|++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4699999999999999999988885433222   223568999999999999999999998654   7899999  5555


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      .+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++..........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~i~H~dl~p~nil~~~~---~~~kl~dfg~~~~~~~~~~~~  151 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLES------KHCIHRDLAARNCLVTEK---NVLKISDFGMSREEEDGVYAS  151 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCccccccchheEEEcCC---CcEEECccccCcccccccccc
Confidence            544                     56777777      999999999999999875   789999999987643321111


Q ss_pred             ---ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         140 ---ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       140 ---~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                         ...++..|+||               |+|+++|+|++ |.+||...+.......+......   .....++..+.+|
T Consensus       152 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  228 (252)
T cd05084         152 TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL---PCPELCPDAVYRL  228 (252)
T ss_pred             cCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCC---CCcccCCHHHHHH
Confidence               11123468888               99999999997 99999887776666666543211   1223578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|++|||+.+++.
T Consensus       229 i~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         229 MERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             HHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=6.1e-31  Score=246.64  Aligned_cols=207  Identities=20%  Similarity=0.200  Sum_probs=159.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecC-------------c
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-------------E   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~-------------~   69 (379)
                      ...||+|+||.||+|.++.+|+.||+ |....     .....+.+|+.+++.++||||+++++++.             .
T Consensus        12 ~~~lg~g~~g~v~~~~~~~~~~~v~i-K~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   90 (302)
T cd07864          12 IGQIGEGTYGQVYKARDKDTGELVAL-KKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGA   90 (302)
T ss_pred             eeeecccCCEEEEEEEECCCCcEEEE-EEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCc
Confidence            35899999999999999999988875 44332     11245778999999999999999988754             3


Q ss_pred             ceEEeeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          70 PLLGLNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        70 ~~~v~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      +|+++|| .|.+...                     .|+.|||+      .||+||||||+||+++++   +.+||+|||
T Consensus        91 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~i~H~dl~p~nili~~~---~~~kl~dfg  161 (302)
T cd07864          91 FYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHK------KNFLHRDIKCSNILLNNK---GQIKLADFG  161 (302)
T ss_pred             EEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CcEEeCccc
Confidence            6899999 4433332                     56777777      999999999999999985   899999999


Q ss_pred             cceeeccCc--cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC---
Q psy6046         128 ISRVILDGI--EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP---  186 (379)
Q Consensus       128 ~a~~~~~~~--~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~---  186 (379)
                      ++.......  ......++..|+||                |+||++|+|++|++||...+..+.+..+.......+   
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (302)
T cd07864         162 LARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAV  241 (302)
T ss_pred             ccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhh
Confidence            998764332  11223456678888                999999999999999987776655555443211100   


Q ss_pred             -----------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         187 -----------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       187 -----------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                             ...+..+++.+.++|.+||..||.+|||+.+++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         242 WPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             cccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence                                   01123578999999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=2.3e-31  Score=253.09  Aligned_cols=210  Identities=14%  Similarity=0.124  Sum_probs=156.2

Q ss_pred             cCcCCC--CceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNR--ARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G--~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..||+|  +||+||+|++..+|+.||+ |.....     ..+.+.+|+.+++.++||||+++++++..   .|+++||  
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vai-K~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTV-RITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEE-EEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            357777  9999999999999999985 554321     23568899999999999999999998764   7899999  


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|++.+.                      .|+.|||+      .||+||||||+||+++.+   +.++++|||.+.....
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~------~~ivHrDlkp~Nill~~~---~~~~~~~~~~~~~~~~  153 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ------NGYIHRNIKASHILISGD---GLVSLSGLSHLYSLVR  153 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEeCC---CcEEEechHHHhhhhc
Confidence            4454443                      56777777      999999999999999976   8899999986543221


Q ss_pred             Cc-c-------ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC---
Q psy6046         135 GI-E-------IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP---  186 (379)
Q Consensus       135 ~~-~-------~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~---  186 (379)
                      .. .       .....++..|+||                 |+||++|+|++|++||.+.................|   
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  233 (328)
T cd08226         154 NGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDI  233 (328)
T ss_pred             cCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccc
Confidence            11 0       0112245568888                 999999999999999987655444433322211100   


Q ss_pred             ----------------------------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         187 ----------------------------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       187 ----------------------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                                                              ......+++.+.+||++||..||.+|||+.++++||||..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~  313 (328)
T cd08226         234 TTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQ  313 (328)
T ss_pred             cccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHH
Confidence                                                    0111235778999999999999999999999999999976


Q ss_pred             Cc
Q psy6046         227 KK  228 (379)
Q Consensus       227 ~~  228 (379)
                      ..
T Consensus       314 ~~  315 (328)
T cd08226         314 VK  315 (328)
T ss_pred             HH
Confidence            54

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.97  E-value=4.3e-31  Score=244.93  Aligned_cols=207  Identities=23%  Similarity=0.284  Sum_probs=162.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      ..||+|++|.||+|.+..+|+.+++++.....    ....+.+|+.+++.++||||+++++++.+   .|+++|| .+++
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~l   84 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDL   84 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCCCH
Confidence            47999999999999999899888854332221    23568899999999999999999987654   7899999 4444


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|+.|||.      .||+|+||||+||+++.+   +.++|+|||.+....... ..
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~dl~p~nili~~~---~~~~l~df~~~~~~~~~~~~~  155 (283)
T cd05118          85 YKLIKDRQRGLPESLIKSYLYQLLQGLAFCHS------HGILHRDLKPENLLINTE---GVLKLADFGLARSFGSPVRPY  155 (283)
T ss_pred             HHHHHhhcccCCHHHHHHHHHHHHHHHHHHHH------CCeeecCcCHHHEEECCC---CcEEEeeeeeeEecCCCcccc
Confidence            433                     56777777      999999999999999975   899999999998765443 23


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-------------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-------------------  183 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-------------------  183 (379)
                      ....++..|+||                |+|+++|+|++|+.||.+.+..+....+.....                   
T Consensus       156 ~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd05118         156 THYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKF  235 (283)
T ss_pred             cCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhh
Confidence            335577888888                999999999999999988776555544432110                   


Q ss_pred             CCC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         184 DFP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       184 ~~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .++       ...++.++.++++||.+||..||.+||++.+++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         236 SFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             hhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            000       11234578899999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.97  E-value=1.1e-30  Score=239.36  Aligned_cols=198  Identities=14%  Similarity=0.115  Sum_probs=155.9

Q ss_pred             CcCCCCceEEEEEEE--cCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPE--KTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~--~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      .||+|+||.||+|..  ..++..+| +|.....     ..+.+.+|+.+++.+.||||+++++++..  .++++||  +|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVA-VKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEE-EEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCC
Confidence            489999999999965  44566666 5554332     23468899999999999999999988654  7899999  56


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      .|...                    .|+.|||.      +||+||||||+||+++.+   +.+||+|||++........ 
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~------~~i~H~dlkp~nill~~~---~~~kl~Dfg~~~~~~~~~~~  151 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEE------TNFVHRDLAARNVLLVTQ---HYAKISDFGLSKALGADENY  151 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccchhhEEEcCC---CeEEECCCccccccCCCCCe
Confidence            66554                    45666666      999999999999999975   7899999999976543321 


Q ss_pred             ---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 ---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 ---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                         .....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+....   ....+++++.
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~---~~~~~~~~l~  228 (257)
T cd05116         152 YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERME---CPQRCPPEMY  228 (257)
T ss_pred             eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCC---CCCCCCHHHH
Confidence               1122345789999               99999999998 999999888888888887654321   2236899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++|.+||..||++||+++++..
T Consensus       229 ~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         229 DLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             HHHHHHhccCchhCcCHHHHHH
Confidence            9999999999999999998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.97  E-value=1.2e-30  Score=239.95  Aligned_cols=201  Identities=18%  Similarity=0.155  Sum_probs=160.3

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ....||+|+||.||+|.+..+++.+|+ |.....  ....+.+|+.+++.++||||+++++++.+   +++++||  +|.
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~~~-K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (263)
T cd05052          10 MKHKLGGGQYGEVYEGVWKKYSLTVAV-KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGN   88 (263)
T ss_pred             EeeecCCcccceEEEEEEecCCceEEE-EEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCc
Confidence            345799999999999999999988884 444332  23568899999999999999999998654   7899998  566


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |.+.                      .++.|||.      .|++||||||+||+++++   +.+||+|||++........
T Consensus        89 L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~------~~i~H~dlkp~nil~~~~---~~~kl~df~~~~~~~~~~~  159 (263)
T cd05052          89 LLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK------KNFIHRDLAARNCLVGEN---HLVKVADFGLSRLMTGDTY  159 (263)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeecccCcceEEEcCC---CcEEeCCCcccccccccee
Confidence            6554                      45666666      999999999999999875   8999999999987644321


Q ss_pred             c--cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         138 I--RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       138 ~--~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .  ....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+..   ......+++++.+
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  236 (263)
T cd05052         160 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYR---MERPEGCPPKVYE  236 (263)
T ss_pred             eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCC---CCCCCCCCHHHHH
Confidence            1  112235679999               99999999998 9999998888877777765421   1223468999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q psy6046         200 FIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.+||..||++|||+.++++
T Consensus       237 li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         237 LMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             HHHHHccCCcccCCCHHHHHH
Confidence            999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=3.5e-31  Score=247.86  Aligned_cols=208  Identities=22%  Similarity=0.257  Sum_probs=165.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|.+..++..+++ |....   ...+.+.+|+.+++.++||||+++++.+..   .|+++||  +|++
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~v~i-K~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L  103 (293)
T cd06647          25 EKIGQGASGTVYTAIDVATGQEVAI-KQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSL  103 (293)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEE-EEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcH
Confidence            3799999999999999989988885 44332   234568899999999999999999987643   8999999  6666


Q ss_pred             hHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cccc
Q psy6046          81 YQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIRE  140 (379)
Q Consensus        81 ~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~  140 (379)
                      .+.                   .|+.|||+      +|++||||||+||+++.+   +.++|+|||++....... ....
T Consensus       104 ~~~~~~~~l~~~~~~~i~~~l~~al~~LH~------~gi~H~dL~p~Nili~~~---~~~kL~dfg~~~~~~~~~~~~~~  174 (293)
T cd06647         104 TDVVTETCMDEGQIAAVCRECLQALEFLHS------NQVIHRDIKSDNILLGMD---GSVKLTDFGFCAQITPEQSKRST  174 (293)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHh------CCEeeccCCHHHEEEcCC---CCEEEccCcceeccccccccccc
Confidence            654                   45667776      999999999999999875   789999999987654332 2334


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC-CCCCcccccCCCHHHHHHHHHh
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ-LDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..|++.|+||               |+|+++|++++|+.||...+.......+.... ..++  .+..++..+.++|.+|
T Consensus       175 ~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~  252 (293)
T cd06647         175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQ--NPEKLSAIFRDFLNRC  252 (293)
T ss_pred             ccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCC--CccccCHHHHHHHHHH
Confidence            5688889999               99999999999999998776654444333222 1111  2235788999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..+|.+||++.+++.||||+...
T Consensus       253 l~~~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         253 LEMDVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             ccCChhhCcCHHHHhcCHHHhcCc
Confidence            999999999999999999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=9.3e-31  Score=249.00  Aligned_cols=213  Identities=23%  Similarity=0.307  Sum_probs=163.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC-Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP-RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~-~g~   79 (379)
                      .+||.|+||.||+|.+..+|+.+|+++...    ......+.+|+.+++.++||||+++++++..    .|+++|+ ++.
T Consensus        16 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~~~~   95 (328)
T cd07856          16 QPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELLGTD   95 (328)
T ss_pred             EeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehhccC
Confidence            489999999999999999999998644432    1234568899999999999999999987632    7899999 444


Q ss_pred             hhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          80 VYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        80 l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      +...                   .|+.|||.      .||+||||+|+||+++..   +.++|+|||.+.....  ....
T Consensus        96 L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~------~~iiH~dl~p~Nili~~~---~~~~l~dfg~~~~~~~--~~~~  164 (328)
T cd07856          96 LHRLLTSRPLEKQFIQYFLYQILRGLKYVHS------AGVVHRDLKPSNILINEN---CDLKICDFGLARIQDP--QMTG  164 (328)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEeECCC---CCEEeCccccccccCC--CcCC
Confidence            4333                   56777777      999999999999999875   8899999999875422  2344


Q ss_pred             cccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC-----------------------
Q psy6046         141 LLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-----------------------  181 (379)
Q Consensus       141 ~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~-----------------------  181 (379)
                      ..+++.|+||                |+|+++|+|++|++||.+.+.......+...                       
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (328)
T cd07856         165 YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS  244 (328)
T ss_pred             CcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhh
Confidence            5677788888                9999999999999999876653322221110                       


Q ss_pred             -C--CCCC-cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         182 -Q--LDFP-DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       182 -~--~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                       .  ...| ....+.+++.+.++|.+||..+|++|||+++++.||||........
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~~~~  299 (328)
T cd07856         245 LPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHDPTD  299 (328)
T ss_pred             ccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccCCcc
Confidence             0  0011 1123457899999999999999999999999999999987665443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=5.9e-31  Score=248.86  Aligned_cols=200  Identities=16%  Similarity=0.127  Sum_probs=156.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE----EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE----VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~----~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      ..||+|+||.||+|++..+|..    || +|....    .....+.+|+.+++.++||||+++++++..  .++++||  
T Consensus        13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~   91 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVA-IKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMP   91 (316)
T ss_pred             eeeecCCCceEEEEEEecCCCccceeEE-EEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCC
Confidence            4899999999999998777765    44 555432    223568899999999999999999998654  6788888  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|.+++.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.....
T Consensus        92 ~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~iiH~dlkp~Nill~~~---~~~kl~DfG~a~~~~~~  162 (316)
T cd05108          92 FGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEE------RRLVHRDLAARNVLVKTP---QHVKITDFGLAKLLGAD  162 (316)
T ss_pred             CCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh------cCeeccccchhheEecCC---CcEEEccccccccccCC
Confidence            6766654                     56777777      999999999999999875   78999999999876543


Q ss_pred             ccc---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IEI---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~~---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ...   ....++..|+||               |+||++|+|++ |..||.+....+....+..+ ...+.  ...++.+
T Consensus       163 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~  239 (316)
T cd05108         163 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG-ERLPQ--PPICTID  239 (316)
T ss_pred             CcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCC-CCCCC--CCCCCHH
Confidence            321   122345679999               99999999997 99999887766655444433 22222  1357899


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+++.+||..+|.+|||+.+++.+
T Consensus       240 ~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         240 VYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.97  E-value=1.2e-30  Score=243.51  Aligned_cols=208  Identities=15%  Similarity=0.179  Sum_probs=160.6

Q ss_pred             ccCcCCCCceEEEEEEEcC--C---CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKT--T---KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~--t---g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      .+.||+|+||.||+|.++.  +   +..|| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++|
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   89 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVA-VKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVME   89 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEE-EEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEe
Confidence            3589999999999997653  2   33455 5654432    22457889999999999999999998654   899999


Q ss_pred             C--CchhhHH------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          76 P--RPPVYQA------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        76 ~--~g~l~~~------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                      |  +|+|.+.                              .|+.|||+      +||+||||||+||+++++   +.++|
T Consensus        90 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~H~dikp~nili~~~---~~~~L  160 (288)
T cd05061          90 LMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA------KKFVHRDLAARNCMVAHD---FTVKI  160 (288)
T ss_pred             CCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCCcCCCCChheEEEcCC---CcEEE
Confidence            9  5555544                              34556665      999999999999999975   89999


Q ss_pred             eecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         124 CDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       124 ~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +|||+++.......   .....++..|+||               |+||++|+|++ |.+||.+.+..+....+..+...
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~  240 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYL  240 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC
Confidence            99999976533221   1123456679999               99999999998 89999988887777776655432


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc------CccccCCc
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK------HPWLMNKK  228 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~~~~~~  228 (379)
                      ..+   ..+++.+.+++.+||..||++|||+.++++      ||||++..
T Consensus       241 ~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~~  287 (288)
T cd05061         241 DQP---DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVS  287 (288)
T ss_pred             CCC---CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCCC
Confidence            211   256899999999999999999999999987      99998764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=1.2e-30  Score=237.85  Aligned_cols=204  Identities=25%  Similarity=0.285  Sum_probs=166.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|.+..++..+|++.....    .....+.+|+++++.++|||++++++.+..   .++++|+  +++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~   85 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGD   85 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCc
Confidence            5799999999999999999988885443322    234568899999999999999999887544   7899998  445


Q ss_pred             hhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          80 VYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        80 l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +.+.                        .|+.+||+      .|++|+||+|+||+++.+   +.++|+|||++......
T Consensus        86 L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~------~~~~H~dl~~~nil~~~~---~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          86 LSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS------RKILHRDIKPQNIFLTSN---GLVKLGDFGISKVLSST  156 (258)
T ss_pred             HHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh------CCEecccCChHHeEEcCC---CcEEECCccceeecccC
Confidence            4332                        56777777      999999999999999975   89999999999876544


Q ss_pred             c-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 I-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      . ......|++.|+||               |+|+++|+|++|..||...+..+....+.......   ....++..+.+
T Consensus       157 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  233 (258)
T cd08215         157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPP---IPSQYSSELRN  233 (258)
T ss_pred             cceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCC---CCCCCCHHHHH
Confidence            3 33446788899999               99999999999999998887777777766554322   22368899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++.+||..+|++|||+.++|.||||
T Consensus       234 ~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         234 LVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             HHHHHcCCChhhCcCHHHHhcCCCC
Confidence            9999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.97  E-value=8.9e-31  Score=241.47  Aligned_cols=201  Identities=11%  Similarity=0.057  Sum_probs=156.5

Q ss_pred             CccCcCCCCceEEEEEEEcCC---CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTT---KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~t---g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..++||+|+||.||+|.+..+   +..+| +|.....    ....+.+|+.+++.++||||+++++++..   .|++|||
T Consensus         9 ~~~~ig~G~fg~V~~~~~~~~~~~~~~va-ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   87 (266)
T cd05064           9 IERILGTGRFGELCRGCLKLPSKRELPVA-IHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEY   87 (266)
T ss_pred             EeeeecccCCCeEEEEEEecCCCceeeEE-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEe
Confidence            345899999999999987533   33455 5554432    23458899999999999999999998654   8999999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|...                     .|+.|||+      +|++||||||+||+++.+   +.++++|||.+....
T Consensus        88 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~------~~iiH~dikp~nili~~~---~~~~l~dfg~~~~~~  158 (266)
T cd05064          88 MSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSE------MGYVHKGLAAHKVLVNSD---LVCKISGFRRLQEDK  158 (266)
T ss_pred             CCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeeccccHhhEEEcCC---CcEEECCCccccccc
Confidence              5666554                     56777777      999999999999999875   899999999876543


Q ss_pred             cCcccc--ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         134 DGIEIR--ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       134 ~~~~~~--~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ......  ...++..|+||               |+||++|++++ |..||.+.+..+....+..+... +  ....++.
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~-~--~~~~~~~  235 (266)
T cd05064         159 SEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRL-P--APRNCPN  235 (266)
T ss_pred             ccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCC-C--CCCCCCH
Confidence            222111  22345689999               99999999775 99999998888888877665322 2  2346899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.+++.+||..+|.+|||++++++
T Consensus       236 ~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         236 LLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             HHHHHHHHHcCCCchhCCCHHHHHH
Confidence            9999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.97  E-value=1.1e-30  Score=242.73  Aligned_cols=202  Identities=16%  Similarity=0.141  Sum_probs=161.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCC-----cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTK-----REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg-----~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      ..+.||+|+||.||+|.+...+     ..+| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~-~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~   87 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVA-IKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLF   87 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEE-EEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEE
Confidence            3458999999999999976655     4455 5554432    13458899999999999999999998664   78999


Q ss_pred             eC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC
Q psy6046          75 NP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF  116 (379)
Q Consensus        75 e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~  116 (379)
                      ||  +|+|.+.                                    .|+.|||.      .|++||||||+||+++++ 
T Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~------~~i~H~dlkp~Nil~~~~-  160 (283)
T cd05048          88 EYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS------HHFVHRDLAARNCLVGEG-  160 (283)
T ss_pred             ecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccccccceEEEcCC-
Confidence            99  5555432                                    55666676      999999999999999975 


Q ss_pred             CCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHH
Q psy6046         117 PNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRN  177 (379)
Q Consensus       117 ~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~  177 (379)
                        +.++|+|||++.......   ......+++.|+||               |+||++|+|++ |..||.+.+..+....
T Consensus       161 --~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~  238 (283)
T cd05048         161 --LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEM  238 (283)
T ss_pred             --CcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence              889999999997653322   12334567889999               99999999998 9999999888888888


Q ss_pred             HHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         178 ISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       178 i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +..+....   ....+|+++.+|+.+||..||.+||++.+++++
T Consensus       239 i~~~~~~~---~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         239 IRSRQLLP---CPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             HHcCCcCC---CcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            77665432   224689999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=9.7e-31  Score=242.88  Aligned_cols=207  Identities=21%  Similarity=0.234  Sum_probs=160.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-~g   78 (379)
                      ..||+|+||.||+|.+..+|+.+|+++....    .....+.+|+.+++.++|||++++++++.     ..|+++|| .+
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~   84 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH   84 (287)
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccc
Confidence            4689999999999999999988885443322    12345889999999999999999998753     37899999 44


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      ++...                     .|+.+||.      .|++|+||+|+||+++++   +.++|+|||++....... 
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~------~~~~h~dl~p~nil~~~~---~~~~l~d~g~~~~~~~~~~  155 (287)
T cd07840          85 DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHS------NGILHRDIKGSNILINND---GVLKLADFGLARPYTKRNS  155 (287)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCcHHHeEEcCC---CCEEEccccceeeccCCCc
Confidence            44333                     56677777      999999999999999985   899999999998765432 


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-----------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-----------  188 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-----------  188 (379)
                       ......++..|+||                |+|+++|+|++|+.||.+.+.......+.......+..           
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWF  235 (287)
T ss_pred             ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhh
Confidence             12334567788888                99999999999999998887766665554321111110           


Q ss_pred             ---------------cccC-CCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         189 ---------------LFED-ISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       189 ---------------~~~~-~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                     .... +++.+.+++.+||..+|.+||++.+++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         236 ENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             hhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence                           1112 38899999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=9.4e-31  Score=240.01  Aligned_cols=214  Identities=23%  Similarity=0.260  Sum_probs=169.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..+||+|+||.||+|++..+|+.+++++.....   ....+.+|+.+++.++||||+++++++..   +++++||  +++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGS   85 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCc
Confidence            358999999999999999999998854433322   24678999999999999999999998665   7999999  566


Q ss_pred             hhHH--------------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc-ccccc
Q psy6046          80 VYQA--------------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI-RELLG  143 (379)
Q Consensus        80 l~~~--------------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~-~~~~g  143 (379)
                      |.+.              .+.+.+..+.++|+ .|++||||+|+||+++.+   +.++|+|||++......... ....+
T Consensus        86 L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~---~~~~l~df~~~~~~~~~~~~~~~~~~  162 (264)
T cd06623          86 LADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSK---GEVKIADFGISKVLENTLDQCNTFVG  162 (264)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCC---CCEEEccCccceecccCCCcccceee
Confidence            6665              22233344445777 999999999999999885   89999999999876543322 24567


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCCcccccC-CCHHHHHHHHHh
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFPDELFED-ISPEAKDFIAKI  204 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~~~~~~~-~s~~~~~li~~~  204 (379)
                      +..|+||               |+|+++|+|++|..||...   ...+....+.......   .... ++..+.++|.+|
T Consensus       163 ~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~  239 (264)
T cd06623         163 TVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPS---LPAEEFSPEFRDFISAC  239 (264)
T ss_pred             cccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCC---CCcccCCHHHHHHHHHH
Confidence            8889998               9999999999999999776   4455555555433221   1223 789999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCC
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      |..+|++|||+.++++||||+..
T Consensus       240 l~~~p~~R~~~~~ll~~~~~~~~  262 (264)
T cd06623         240 LQKDPKKRPSAAELLQHPFIKKA  262 (264)
T ss_pred             ccCChhhCCCHHHHHhCHHHHhc
Confidence            99999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-30  Score=242.63  Aligned_cols=207  Identities=22%  Similarity=0.260  Sum_probs=160.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhC---CCCCcceeeeecCc--------ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLI---KVEPIEKYYSLDPE--------PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l---~hpnIv~~~~~~~~--------~~~v   73 (379)
                      .+||+|+||.||+|+++.+|+.+|++......    ....+.+|+.+++.+   +|||++++++++.+        ++++
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~   84 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLV   84 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEE
Confidence            47899999999999999889888854332211    123466788877766   59999999988642        7889


Q ss_pred             eeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          74 LNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        74 ~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|+ .+.+.+.                      .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++.
T Consensus        85 ~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~------~~i~h~~l~~~nili~~~---~~~~l~dfg~~~  155 (287)
T cd07838          85 FEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS------HRIVHRDLKPQNILVTSD---GQVKIADFGLAR  155 (287)
T ss_pred             ehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCChhhEEEccC---CCEEEeccCcce
Confidence            998 4444332                      56777777      999999999999999986   899999999998


Q ss_pred             eeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-----CC-----
Q psy6046         131 VILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-----DF-----  185 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-----~~-----  185 (379)
                      ............++..|+||               |+||++|+|++|.+||.+.+..+....+.....     .+     
T Consensus       156 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (287)
T cd07838         156 IYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVS  235 (287)
T ss_pred             eccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcc
Confidence            87555444455678889999               999999999999999998887776666543110     00     


Q ss_pred             -------------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         186 -------------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       186 -------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                                   +....+.+++.+.++|.+||..||.+||++.+++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         236 LPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             cchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence                         011123457889999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=6.4e-31  Score=254.49  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=153.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc-----EEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR-----EVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~-----~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~   74 (379)
                      .++||+|+||.||+|++..+|.     .|| +|....    .....+.+|+.+++.+ +||||+++++.+.+   .|++|
T Consensus        43 ~~~LG~G~fg~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~  121 (374)
T cd05106          43 GKTLGAGAFGKVVEATAFGLGKEDNVLRVA-VKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVIT  121 (374)
T ss_pred             hheecCCCcccEEEEEEecCCcccccceeE-EEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeH
Confidence            4589999999999999765543     466 555433    2235688999999999 89999999998765   78999


Q ss_pred             eC--CchhhHH---------------------------------------------------------------------
Q psy6046          75 NP--RPPVYQA---------------------------------------------------------------------   83 (379)
Q Consensus        75 e~--~g~l~~~---------------------------------------------------------------------   83 (379)
                      ||  +|+|++.                                                                     
T Consensus       122 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (374)
T cd05106         122 EYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEE  201 (374)
T ss_pred             hhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchh
Confidence            99  6665432                                                                     


Q ss_pred             ---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---cc
Q psy6046          84 ---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IR  139 (379)
Q Consensus        84 ---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---~~  139 (379)
                                           .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.......   ..
T Consensus       202 ~~~~~~~l~~~~~~~i~~qi~~aL~yLH~------~giiHrDLkp~Nil~~~~---~~~kL~DfGla~~~~~~~~~~~~~  272 (374)
T cd05106         202 DTEDSWPLDLDDLLRFSSQVAQGMDFLAS------KNCIHRDVAARNVLLTDG---RVAKICDFGLARDIMNDSNYVVKG  272 (374)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHHHHHH------CCEEeccCchheEEEeCC---CeEEEeeceeeeeccCCcceeecc
Confidence                                 45666666      999999999999999875   8899999999987543321   11


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...+++.|+||               |+||++|+|++ |+.||...........+.......+  ....+++++.+++.+
T Consensus       273 ~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~  350 (374)
T cd05106         273 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMS--RPDFAPPEIYSIMKM  350 (374)
T ss_pred             CCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCcc--CCCCCCHHHHHHHHH
Confidence            22345679999               99999999997 9999987655444444433332222  123468999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy6046         204 ILIKNPMERMTAKEALK  220 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~  220 (379)
                      ||..||++|||+.++++
T Consensus       351 cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         351 CWNLEPTERPTFSQISQ  367 (374)
T ss_pred             HcCCChhhCcCHHHHHH
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=2.3e-30  Score=234.91  Aligned_cols=206  Identities=27%  Similarity=0.316  Sum_probs=163.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ....||+|++|.||+|.+..+++.+++++.....  ....+.+|+.+++.++||+++++++++..   .++++|+  +++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   83 (253)
T cd05122           4 ILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGS   83 (253)
T ss_pred             eeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCc
Confidence            3468999999999999999889888854443332  45679999999999999999999998654   7899999  455


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      |.+.                     .|+.+||.      .|++||||+|+||+++.+   +.++|+|||.+.........
T Consensus        84 L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~------~~i~h~dl~p~ni~i~~~---~~~~l~d~~~~~~~~~~~~~  154 (253)
T cd05122          84 LKDLLKSTNQTLTESQIAYVCKELLKGLEYLHS------NGIIHRDIKAANILLTSD---GEVKLIDFGLSAQLSDTKAR  154 (253)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc------CCEecCCCCHHHEEEccC---CeEEEeeccccccccccccc
Confidence            5443                     44555555      999999999999999985   89999999999876554333


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-CCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-DFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-~~~~~~~~~~s~~~~~li~  202 (379)
                      ....++..|+||               |+|+++|+|++|..||...+.......+..... ..+..  ..++..+.++|.
T Consensus       155 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~  232 (253)
T cd05122         155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNP--EKWSDEFKDFLK  232 (253)
T ss_pred             cceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcc--cccCHHHHHHHH
Confidence            456788899999               999999999999999987755554444443221 11111  124899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCcc
Q psy6046         203 KILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      +||..||++|||+.+++.|||
T Consensus       233 ~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         233 KCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             HHccCChhhCCCHHHHhcCCC
Confidence            999999999999999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=1.9e-30  Score=245.55  Aligned_cols=205  Identities=19%  Similarity=0.195  Sum_probs=163.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      .||+|+||.||+|++..+|..+|+++....     .....+.+|+.+++.++|||++++++++.+   .|+++|| .|.+
T Consensus        32 ~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~g~l  111 (317)
T cd06635          32 EIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSA  111 (317)
T ss_pred             eeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCCCCH
Confidence            799999999999999999988885433221     122468899999999999999999998654   7899999 5554


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      .+.                     .|+.|||.      .||+||||+|+||+++.+   +.++|+|||++.....   ..
T Consensus       112 ~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~i~H~dL~p~Nil~~~~---~~~kl~dfg~~~~~~~---~~  179 (317)
T cd06635         112 SDLLEVHKKPLQEVEIAAITHGALQGLAYLHS------HNMIHRDIKAGNILLTEP---GQVKLADFGSASIASP---AN  179 (317)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCcccEEECCC---CCEEEecCCCccccCC---cc
Confidence            433                     45566666      999999999999999875   8999999999865432   23


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ...|++.|+||                  |+||++|+|++|++||.+.........+........  ....+++.++++|
T Consensus       180 ~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li  257 (317)
T cd06635         180 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTL--QSNEWSDYFRNFV  257 (317)
T ss_pred             cccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCC--CCccccHHHHHHH
Confidence            45678888888                  999999999999999988776666666655443222  1235789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..+|.+||++.++++|||+....
T Consensus       258 ~~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         258 DSCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             HHHccCCcccCcCHHHHHhChhhhccC
Confidence            999999999999999999999996544

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0193|consensus

Probab=99.97  E-value=8.6e-32  Score=258.50  Aligned_cols=202  Identities=17%  Similarity=0.165  Sum_probs=166.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      .+.+.||+|+||+||+|.+  -| .|| +|..+.     ...+.|++|+.++++=+|.||+-+.+++..  +.++..+  
T Consensus       395 ~l~~rIGsGsFGtV~Rg~w--hG-dVA-VK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCe  470 (678)
T KOG0193|consen  395 LLGERIGSGSFGTVYRGRW--HG-DVA-VKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCE  470 (678)
T ss_pred             hccceeccccccceeeccc--cc-ceE-EEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhcc
Confidence            3456899999999999984  34 566 455544     345779999999999999999999999887  6677777  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec--
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL--  133 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~--  133 (379)
                      +.+||..                     .|+.|||.      ++|||||||..||++.++   +.|||+|||++....  
T Consensus       471 GsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHA------K~IIHrDLKSnNIFl~~~---~kVkIgDFGLatvk~~w  541 (678)
T KOG0193|consen  471 GSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHA------KNIIHRDLKSNNIFLHED---LKVKIGDFGLATVKTRW  541 (678)
T ss_pred             CchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhh------hhhhhhhccccceEEccC---CcEEEecccceeeeeee
Confidence            6678877                     56788888      999999999999999986   899999999997543  


Q ss_pred             -cCccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-cccccCC
Q psy6046         134 -DGIEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-DELFEDI  193 (379)
Q Consensus       134 -~~~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~  193 (379)
                       .........|+..||||                  |+||++|||+||..||...+.+.++-.+-+|..... .....++
T Consensus       542 ~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~  621 (678)
T KOG0193|consen  542 SGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNC  621 (678)
T ss_pred             ccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccC
Confidence             33345667788999999                  999999999999999998888877777777744322 2223467


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.++++|+..||.+++++||.+.++|.
T Consensus       622 pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  622 PKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             HHHHHHHHHHHHhcCcccCccHHHHHH
Confidence            789999999999999999999999887

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-30  Score=242.20  Aligned_cols=208  Identities=25%  Similarity=0.289  Sum_probs=162.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|+...+++.+++++....   .+.....+|+..++.++ ||||+++++++.+   .|+++|+ +|.
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   83 (283)
T cd07830           4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEGN   83 (283)
T ss_pred             heeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecCCCC
Confidence            34799999999999999989988885443322   12234567999999999 9999999988654   7999999 655


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +++.                      .++.|||+      +|++|+||+|+||++++.   +.++|+|||++........
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~------~~i~H~dl~~~ni~i~~~---~~~~l~d~~~~~~~~~~~~  154 (283)
T cd07830          84 LYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK------HGFFHRDLKPENLLVSGP---EVVKIADFGLAREIRSRPP  154 (283)
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCChhhEEEcCC---CCEEEeecccceeccCCCC
Confidence            5543                      56777777      999999999999999985   8999999999987655444


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-----------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-----------------  184 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-----------------  184 (379)
                      .....++..|+||                |+|+++++|++|++||.+.+..+....+....-.                 
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd07830         155 YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLG  234 (283)
T ss_pred             cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccc
Confidence            4556788889988                9999999999999999887766555444321100                 


Q ss_pred             --CC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 --FP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 --~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                        .+       ....+..+..+.+||.+||..+|.+|||+.|++.||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         235 FRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             ccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence              00       11122346889999999999999999999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.97  E-value=1e-30  Score=240.67  Aligned_cols=205  Identities=20%  Similarity=0.204  Sum_probs=159.8

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEecc-----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERN-----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .-..+.||+|+||.||+|++..+|+.+|+++...     ......+.+|+.+++.++||||+++++.+.+   .++++||
T Consensus         4 ~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   83 (267)
T cd08228           4 FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLEL   83 (267)
T ss_pred             eeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEe
Confidence            3345689999999999999999999988543322     1223457899999999999999999987654   7899999


Q ss_pred             --CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          77 --RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        77 --~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                        +|++...                        .|+.|||+      +|++|+||||+||+++.+   +.++|+|||++.
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~dl~~~nil~~~~---~~~~l~d~g~~~  154 (267)
T cd08228          84 ADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS------RRVMHRDIKPANVFITAT---GVVKLGDLGLGR  154 (267)
T ss_pred             cCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh------CCeeCCCCCHHHEEEcCC---CCEEECccccce
Confidence              5566432                        45666666      999999999999999875   789999999998


Q ss_pred             eeccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC--hHHHHHHHHhCCCCCCcccccC
Q psy6046         131 VILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET--DSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       131 ~~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~--~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      ...... ......|++.|+||               |+|+++|+|++|..||....  ..+....+....  +++.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~  232 (267)
T cd08228         155 FFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD--YPPLPTEH  232 (267)
T ss_pred             eccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCC--CCCCChhh
Confidence            765432 23345688899999               99999999999999996543  344455544432  22222235


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+..+.++|.+||..+|.+|||+.++++
T Consensus       233 ~~~~~~~li~~cl~~~p~~Rp~~~~vl~  260 (267)
T cd08228         233 YSEKLRELVSMCIYPDPDQRPDIGYVHQ  260 (267)
T ss_pred             cCHHHHHHHHHHCCCCcccCcCHHHHHH
Confidence            7899999999999999999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.97  E-value=2.4e-30  Score=238.65  Aligned_cols=202  Identities=19%  Similarity=0.170  Sum_probs=156.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCC---cEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTK---REVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------   69 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg---~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------   69 (379)
                      ..++||+|+||.||+|....++   ..+| +|....     .....+.+|+.+++.++||||+++++++.+         
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   81 (273)
T cd05035           3 LGKILGEGEFGSVMEGQLSQDDGSQLKVA-VKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPK   81 (273)
T ss_pred             cccccCcCCCceEEEEEEecCCCCcceEE-EEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcc
Confidence            3468999999999999976544   5566 444332     123468899999999999999999987532         


Q ss_pred             ceEEeeC--CchhhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcE
Q psy6046          70 PLLGLNP--RPPVYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDI  121 (379)
Q Consensus        70 ~~~v~e~--~g~l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~i  121 (379)
                      .++++||  +|++...                          .|+.|||+      .|++||||||+||+++++   +.+
T Consensus        82 ~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~------~~i~H~dlkp~Nil~~~~---~~~  152 (273)
T cd05035          82 PMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN------RNFIHRDLAARNCMLRED---MTV  152 (273)
T ss_pred             cEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh------CCeeccccchheEEECCC---CeE
Confidence            5889998  5554322                          56777777      999999999999999875   899


Q ss_pred             EEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCC
Q psy6046         122 KVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQ  182 (379)
Q Consensus       122 kl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~  182 (379)
                      ||+|||+++.......   .....++..|+||               |+||++|+|++ |.+||.+.+..+....+..+.
T Consensus       153 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~  232 (273)
T cd05035         153 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGN  232 (273)
T ss_pred             EECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC
Confidence            9999999987643321   1122345678888               99999999999 999999888877777776654


Q ss_pred             CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         183 LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       183 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ...   ....+++.+.+++.+||..||.+|||+.+++++
T Consensus       233 ~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         233 RLK---QPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             CCC---CCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            221   223689999999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=8e-31  Score=242.56  Aligned_cols=204  Identities=28%  Similarity=0.412  Sum_probs=168.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ....||+|+||.||+|.+..+|+.+|+ |+...      .....+.+|+.+++.+. ||||+++++++.+   .|++||+
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd05581           5 FGKIIGEGSFSTVVLAKEKETNKEYAI-KILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEY   83 (280)
T ss_pred             EeeeecCCCceEEEEEEEcCCCCEEEE-EEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcC
Confidence            445899999999999999999998884 54432      22356889999999999 9999999988654   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                        +|+|.+.                    .|+.+||.      .|++|+||+|+||+++.+   +.++|+|||++.....
T Consensus        84 ~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~------~~~~H~dl~~~ni~i~~~---~~~~l~df~~~~~~~~  154 (280)
T cd05581          84 APNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHS------KGIIHRDLKPENILLDKD---MHIKITDFGTAKVLDP  154 (280)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCHHHeEECCC---CCEEecCCccccccCC
Confidence              6666555                    56777777      999999999999999875   8899999999876543


Q ss_pred             Cc---------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHH
Q psy6046         135 GI---------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNI  178 (379)
Q Consensus       135 ~~---------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i  178 (379)
                      ..                     ......++..|+||               |+|++++++++|..||...+....+..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~  234 (280)
T cd05581         155 NSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKI  234 (280)
T ss_pred             ccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence            21                     11234578889999               9999999999999999988877777777


Q ss_pred             HhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCH----HHHhcCccc
Q psy6046         179 SKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA----KEALKHPWL  224 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~----~e~l~hp~~  224 (379)
                      ......++.    .+++.+.+||.+||..+|.+|||+    +++++||||
T Consensus       235 ~~~~~~~~~----~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         235 LKLEYSFPP----NFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HhcCCCCCC----ccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            666665554    479999999999999999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.97  E-value=2.6e-30  Score=236.76  Aligned_cols=198  Identities=17%  Similarity=0.148  Sum_probs=157.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.... +..+| +|.....  ....+.+|+.+++.++||||+++++++.+   .|++|||  +|+|.
T Consensus        10 ~~lg~G~~~~vy~~~~~~-~~~~a-~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~   87 (256)
T cd05114          10 KELGSGQFGVVHLGKWRA-QIKVA-IKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLL   87 (256)
T ss_pred             eEecCCcCceEEEEEecc-CceEE-EEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHH
Confidence            479999999999998754 34555 4544332  23578899999999999999999988765   7999999  56665


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc-
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-  139 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~-  139 (379)
                      +.                     .|+.|||+      .||+||||||+||+++.+   +.+||+|||.++......... 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~ni~i~~~---~~~kl~d~g~~~~~~~~~~~~~  158 (256)
T cd05114          88 NYLRQRQGKLSKDMLLSMCQDVCEGMEYLER------NSFIHRDLAARNCLVSST---GVVKVSDFGMTRYVLDDEYTSS  158 (256)
T ss_pred             HHHHhCccCCCHHHHHHHHHHHHHHHHHHHH------CCccccccCcceEEEcCC---CeEEECCCCCccccCCCceecc
Confidence            54                     56777777      999999999999999875   889999999997654332221 


Q ss_pred             -ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         140 -ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       140 -~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                       ...++..|+||               |+|+++|+|++ |++||...+..+....+..+.....+   ...+..+.+++.
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~li~  235 (256)
T cd05114         159 SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRP---KLASMTVYEVMY  235 (256)
T ss_pred             CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCC---CCCCHHHHHHHH
Confidence             22345578988               99999999999 99999998888888888776533222   246889999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..+|++|||+++++.
T Consensus       236 ~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         236 SCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             HHccCCcccCcCHHHHHH
Confidence            999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-30  Score=238.51  Aligned_cols=205  Identities=20%  Similarity=0.239  Sum_probs=162.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--------ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v   73 (379)
                      ...+||+|+||.||+|.+..+|+.+|+ |....        .....+.+|+.+++.++||||+++++.+.+     ++++
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v   84 (264)
T cd06653           6 LGKLLGRGAFGEVYLCYDADTGRELAV-KQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIF   84 (264)
T ss_pred             eeeeEccCCCeEEEEEEEcCCCCEEEE-EEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEE
Confidence            456899999999999999999998885 43321        123468899999999999999999987543     6889


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|+  ++.|.+.                    .|+.|||+      .|++|+||||+||+++.+   +.++|+|||+++.
T Consensus        85 ~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~------~~i~H~dl~p~ni~i~~~---~~~~l~dfg~~~~  155 (264)
T cd06653          85 VEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHS------NMIVHRDIKGANILRDSA---GNVKLGDFGASKR  155 (264)
T ss_pred             EEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEEcCC---CCEEECccccccc
Confidence            999  5555443                    55667776      999999999999999875   7899999999986


Q ss_pred             eccC----ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccC
Q psy6046         132 ILDG----IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       132 ~~~~----~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      ....    .......|+..|+||               |+||++|+|++|++||...........+.....  ++..+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~p~~  233 (264)
T cd06653         156 IQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPT--KPMLPDG  233 (264)
T ss_pred             cccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCC--CCCCCcc
Confidence            5321    122345688899999               999999999999999987766655555543321  2223456


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +++.+.++|.+||. +|..|||+.+++.|||+
T Consensus       234 ~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         234 VSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             cCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence            89999999999999 58999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.97  E-value=1.4e-30  Score=252.36  Aligned_cols=201  Identities=16%  Similarity=0.168  Sum_probs=151.6

Q ss_pred             ccCcCCCCceEEEEEEE-----cCCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPE-----KTTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~-----~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~   74 (379)
                      .+.||+|+||.||+|++     ..++..|| +|....    ...+.+.+|+.+|+.+ +||||+++++++.+   .|++|
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~va-vK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~  118 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVA-VKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVIT  118 (375)
T ss_pred             hheecCCccceEEEEEEeccccCccceeEE-EEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeee
Confidence            35899999999999974     33455566 565543    2345688999999999 89999999998765   78999


Q ss_pred             eC--CchhhHH---------------------------------------------------------------------
Q psy6046          75 NP--RPPVYQA---------------------------------------------------------------------   83 (379)
Q Consensus        75 e~--~g~l~~~---------------------------------------------------------------------   83 (379)
                      ||  +|+|+..                                                                     
T Consensus       119 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
T cd05104         119 EYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQD  198 (375)
T ss_pred             hhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccc
Confidence            99  6655422                                                                     


Q ss_pred             --------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          84 --------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        84 --------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                                                .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.......
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~Nill~~~---~~~kl~DfG~a~~~~~~~~  269 (375)
T cd05104         199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS------KNCIHRDLAARNILLTHG---RITKICDFGLARDIRNDSN  269 (375)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCchhhEEEECC---CcEEEecCccceeccCccc
Confidence                                      45666666      999999999999999875   7899999999987643321


Q ss_pred             ---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHH-HHHHHHhCCCCCCcccccCCCHHH
Q psy6046         138 ---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSE-TFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       138 ---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                         .....++..|+||               |+||++|+|++ |..||.+..... ....+..+. ...  .+...+.++
T Consensus       270 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l  346 (375)
T cd05104         270 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGY-RML--SPECAPSEM  346 (375)
T ss_pred             ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCc-cCC--CCCCCCHHH
Confidence               1123345679999               99999999998 999998765443 334444332 211  123468899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||.+||..||++|||+.++++.
T Consensus       347 ~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         347 YDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             HHHHHHHccCChhHCcCHHHHHHH
Confidence            999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.97  E-value=7.2e-30  Score=240.64  Aligned_cols=205  Identities=17%  Similarity=0.171  Sum_probs=162.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      .||+|+||.||+|++..++..+|+++....     .....+.+|+.+++.++|||++++++++.+   .|+++|| .|.+
T Consensus        22 ~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l  101 (308)
T cd06634          22 EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSA  101 (308)
T ss_pred             heeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccCCCH
Confidence            799999999999999999988885443221     123457889999999999999999887554   7899999 4444


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ...                     .|+.|||+      .|++||||+|+||+++.+   +.++|+|||++......   .
T Consensus       102 ~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~------~~i~H~dl~p~nil~~~~---~~~kl~dfg~~~~~~~~---~  169 (308)
T cd06634         102 SDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS------HNMIHRDVKAGNILLSEP---GLVKLGDFGSASIMAPA---N  169 (308)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHhEEECCC---CcEEECCcccceeecCc---c
Confidence            332                     45677776      999999999999999875   89999999998765332   3


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ...|++.|+||                  |+||++|+|++|..||...+..+....+..+..+.  .....++..+.+||
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li  247 (308)
T cd06634         170 XFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPA--LQSGHWSEYFRNFV  247 (308)
T ss_pred             cccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCC--cCcccccHHHHHHH
Confidence            35678888888                  89999999999999998776655555554443322  11235789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..+|.+||+++++++|||+....
T Consensus       248 ~~cl~~~P~~Rp~~~~ll~~~~~~~~~  274 (308)
T cd06634         248 DSCLQKIPQDRPTSEVLLKHRFVLRER  274 (308)
T ss_pred             HHHhhCCcccCCCHHHHhhCccccccC
Confidence            999999999999999999999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.97  E-value=3.1e-30  Score=239.06  Aligned_cols=200  Identities=20%  Similarity=0.206  Sum_probs=159.8

Q ss_pred             ccCcCCCCceEEEEEEEcCC-----CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-----KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-----g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ...||+|+||.||+|.+..+     +..+| +|.....    ....+.+|+++++.++||||+++++++..   .|+++|
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   88 (280)
T cd05049          10 KRELGEGAFGKVFLGECYHLEPENDKELVA-VKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFE   88 (280)
T ss_pred             HhhccccCCceEeeeeeccccCcCCcceEE-EEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEe
Confidence            35899999999999987543     45566 4544332    23578999999999999999999998665   899999


Q ss_pred             C--CchhhHH----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          76 P--RPPVYQA----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        76 ~--~g~l~~~----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      |  +|+|.+.                                  .|+.|||+      +|++||||||+||+++.+   +
T Consensus        89 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~------~~i~h~dlkp~nili~~~---~  159 (280)
T cd05049          89 YMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS------QHFVHRDLATRNCLVGYD---L  159 (280)
T ss_pred             cCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh------CCeeccccccceEEEcCC---C
Confidence            8  5554322                                  45667776      999999999999999986   8


Q ss_pred             cEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh
Q psy6046         120 DIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK  180 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~  180 (379)
                      .+||+|||++........   .....+++.|+||               |+||++|+|++ |..||.+.+..+....+..
T Consensus       160 ~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~  239 (280)
T cd05049         160 VVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQ  239 (280)
T ss_pred             eEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc
Confidence            999999999976533221   2233456789999               99999999998 9999998888888888877


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +....+.   ..++..+.+++.+||..||.+|||+.|+++
T Consensus       240 ~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         240 GRLLQRP---RTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             CCcCCCC---CCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            6654433   358999999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.3e-30  Score=234.89  Aligned_cols=205  Identities=27%  Similarity=0.286  Sum_probs=163.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|++|.||+|.+..+++.++++......    ....+.+|+++++.++|||++++++++.+   +++++|+  ++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENG   84 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCC
Confidence            458999999999999999999888854433322    34568999999999999999999887654   7899999  55


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      +|.+.                    .|+.+||+      .||+||||+|+||+++.+   +.++|+|||.+........ 
T Consensus        85 ~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~ni~i~~~---~~~~l~d~~~~~~~~~~~~~  155 (254)
T cd06627          85 SLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHE------QGVIHRDIKAANILTTKD---GVVKLADFGVATKLNDVSKD  155 (254)
T ss_pred             cHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh------CCcccCCCCHHHEEECCC---CCEEEeccccceecCCCccc
Confidence            55543                    45666666      999999999999999975   8999999999987654332 


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      .....++..|+||               |+|+++|+|++|..||...+.......+......   .....+++.+.+++.
T Consensus       156 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~  232 (254)
T cd06627         156 DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHP---PLPEGISPELKDFLM  232 (254)
T ss_pred             ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCC---CCCCCCCHHHHHHHH
Confidence            2345678889999               9999999999999999876655544444432221   122467899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccc
Q psy6046         203 KILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +||..+|++|||+.+++.||||
T Consensus       233 ~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         233 QCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             HHHhCChhhCcCHHHHhcCCCC
Confidence            9999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.97  E-value=2.1e-30  Score=243.56  Aligned_cols=205  Identities=15%  Similarity=0.090  Sum_probs=152.8

Q ss_pred             cCccCcCCCCceEEEEEEEcCC----------------CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeee
Q psy6046           6 MASHVGGNRARSSCSRKPEKTT----------------KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYS   65 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~t----------------g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~   65 (379)
                      .....||+|+||.||+|++..+                +..|| +|.....    ....+.+|+.+++.++||||+++++
T Consensus         8 ~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~   86 (304)
T cd05096           8 LFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVA-VKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLG   86 (304)
T ss_pred             eeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEE-EEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEE
Confidence            3456899999999999986432                22455 5654432    2346889999999999999999999


Q ss_pred             ecCc---ceEEeeC--CchhhHH---------------------------------------HHHHHHhcccCCCCCCeE
Q psy6046          66 LDPE---PLLGLNP--RPPVYQA---------------------------------------SATTKAGSVLFPPLMDFI  101 (379)
Q Consensus        66 ~~~~---~~~v~e~--~g~l~~~---------------------------------------~al~~lh~~~~~h~~~iv  101 (379)
                      ++.+   .|+++||  +|+|.+.                                       .|+.|||+      .||+
T Consensus        87 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~------~~iv  160 (304)
T cd05096          87 VCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS------LNFV  160 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH------CCcc
Confidence            8654   8999999  5655431                                       55677777      9999


Q ss_pred             eCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh--
Q psy6046         102 FFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT--  161 (379)
Q Consensus       102 HrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt--  161 (379)
                      ||||||+|||++.+   +.+||+|||+++.......   .....++..|+||               |+|+++|+|++  
T Consensus       161 H~dlkp~Nill~~~---~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~  237 (304)
T cd05096         161 HRDLATRNCLVGEN---LTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLC  237 (304)
T ss_pred             ccCcchhheEEcCC---ccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHcc
Confidence            99999999999975   8999999999986543321   2233457789999               99999999986  


Q ss_pred             CCCCCCCCChHHHHHHHHhC----CCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         162 GFSPFGGETDSETFRNISKA----QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       162 g~~Pf~~~~~~~~~~~i~~~----~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +..||.+.+..+....+...    .........+.++..+.+|+.+||..||++|||+.++..
T Consensus       238 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~  300 (304)
T cd05096         238 KEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHA  300 (304)
T ss_pred             CCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHH
Confidence            67888877766655444221    111111112357899999999999999999999999954

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.97  E-value=2.8e-30  Score=238.62  Aligned_cols=200  Identities=16%  Similarity=0.127  Sum_probs=155.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEE-EEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREV-VQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~-a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ++||+|+||.||+|++..+|..+ +++|....    .....+.+|+.+++.+ .||||+++++++..   +|+++||  +
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            47999999999999998888754 33554432    2235688999999999 79999999998665   7899999  5


Q ss_pred             chhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcE
Q psy6046          78 PPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDI  121 (379)
Q Consensus        78 g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~i  121 (379)
                      |+|.+.                                    .|+.|||+      .|++||||||+||+++.+   +.+
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~------~~i~H~dikp~nili~~~---~~~  151 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ------KQFIHRDLAARNILVGEN---YVA  151 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccccceEEEcCC---CeE
Confidence            555322                                    46777777      999999999999999985   899


Q ss_pred             EEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCC
Q psy6046         122 KVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDF  185 (379)
Q Consensus       122 kl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~  185 (379)
                      ||+|||++..............++.|+||               |+|+++|+|++ |..||.+.+..+....+..+... 
T Consensus       152 kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~-  230 (270)
T cd05047         152 KIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL-  230 (270)
T ss_pred             EECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCC-
Confidence            99999998643211111112235568888               99999999997 99999888877777766554211 


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                        .....++.++.+++.+||..+|.+|||+.+++.
T Consensus       231 --~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         231 --EKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             --CCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence              122357899999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=1.7e-30  Score=242.36  Aligned_cols=210  Identities=23%  Similarity=0.293  Sum_probs=164.5

Q ss_pred             ccCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v   73 (379)
                      ...||+|+||.||+|.+.   .+|+.|| +|....       ...+.+.+|+.+++.+. ||+|+.+++.+..   +|++
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~a-iK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYA-MKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLI   83 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEE-EEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEE
Confidence            358999999999999875   4787777 454432       12356788999999995 9999999887654   7899


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +||  +|++.+.                    .|+.|||+      .|++||||+|+||+++.+   +.+||+|||++..
T Consensus        84 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~------~~i~H~dl~p~nil~~~~---~~~kl~dfg~~~~  154 (290)
T cd05613          84 LDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHK------LGIIYRDIKLENILLDSN---GHVVLTDFGLSKE  154 (290)
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHeEECCC---CCEEEeeCcccee
Confidence            999  6777665                    45666666      999999999999999886   8999999999987


Q ss_pred             eccCc--cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCC----hHHHHHHHHhCCCCCCcc
Q psy6046         132 ILDGI--EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGET----DSETFRNISKAQLDFPDE  188 (379)
Q Consensus       132 ~~~~~--~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~  188 (379)
                      .....  ......|+..|+||                 |+|+++|+|++|..||....    ..+....+.....+++  
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (290)
T cd05613         155 FHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP--  232 (290)
T ss_pred             cccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCC--
Confidence            54322  22345688889988                 89999999999999996432    2334444444433333  


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCC-----CHHHHhcCccccCCcccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  231 (379)
                        ..+++.+.+++.+||..||++||     ++++++.||||....|+.
T Consensus       233 --~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~  278 (290)
T cd05613         233 --QEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDD  278 (290)
T ss_pred             --ccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHH
Confidence              35789999999999999999997     899999999999887654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.97  E-value=3.3e-30  Score=240.43  Aligned_cols=202  Identities=18%  Similarity=0.164  Sum_probs=158.7

Q ss_pred             cCccCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           6 MASHVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      .....||+|+||.||+|.+..     ++..+| +|.....   ....+.+|+.+++.++||||+++++++.+   +|+++
T Consensus         8 ~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~-ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   86 (288)
T cd05093           8 VLKRELGEGAFGKVFLAECYNLCPEQDKILVA-VKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVF   86 (288)
T ss_pred             eeccccCCcCCeeEEeeEeccCCCCCcceEEE-EEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEE
Confidence            345689999999999998633     333455 5554432   23568999999999999999999988665   89999


Q ss_pred             eC--CchhhHH---------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          75 NP--RPPVYQA---------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        75 e~--~g~l~~~---------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      ||  +|+|.+.                                 .|+.|||+      +|++||||||+||+++++   +
T Consensus        87 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~------~~i~H~dlkp~Nili~~~---~  157 (288)
T cd05093          87 EYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS------QHFVHRDLATRNCLVGEN---L  157 (288)
T ss_pred             EcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecccCcceEEEccC---C
Confidence            99  5555322                                 45667776      999999999999999885   8


Q ss_pred             cEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh
Q psy6046         120 DIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK  180 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~  180 (379)
                      .+||+|||+++.......   .....+++.|+||               |+||++|+|++ |.+||.+.+..+....+..
T Consensus       158 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~  237 (288)
T cd05093         158 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ  237 (288)
T ss_pred             cEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence            999999999976533221   2233457789999               99999999998 9999998888888888877


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +......   ..+++++.+|+.+||..||.+|||+.+++.
T Consensus       238 ~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         238 GRVLQRP---RTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             CCcCCCC---CCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            6543222   357899999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.97  E-value=2.8e-30  Score=240.12  Aligned_cols=201  Identities=16%  Similarity=0.154  Sum_probs=156.2

Q ss_pred             cCcCCCCceEEEEEEEcC----CCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKT----TKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~----tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      +.||+|+||.||+|....    ++..+++++.....   ....+.+|+.+++.++||||+++++++..   .|+++||  
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   90 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLN   90 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCC
Confidence            579999999999998643    44556643333222   22458899999999999999999987554   7999999  


Q ss_pred             CchhhHH-------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          77 RPPVYQA-------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        77 ~g~l~~~-------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      +|+|.+.                                     .|+.|||+      +|++||||||+||+++++   +
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~------~~i~H~dlkp~nili~~~---~  161 (283)
T cd05090          91 QGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS------HFFVHKDLAARNILIGEQ---L  161 (283)
T ss_pred             CCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh------cCeehhccccceEEEcCC---C
Confidence            5554321                                     45677776      999999999999999986   7


Q ss_pred             cEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh
Q psy6046         120 DIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK  180 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~  180 (379)
                      .+||+|||+++......   ......++..|+||               |+|+++|+|++ |.+||.+.+..+....+..
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~  241 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRK  241 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence            89999999998654322   12234456679998               99999999998 9999998887777777765


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .....   .+..+++.+.+++.+||..||.+||++.+++++
T Consensus       242 ~~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         242 RQLLP---CSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             CCcCC---CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            54321   224689999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=2.2e-30  Score=240.09  Aligned_cols=207  Identities=25%  Similarity=0.293  Sum_probs=161.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      ..||+|+||.||+|++..+++.+|++.....    .....+..|+.+++.++|||++++++++.+   +++++|+ .+++
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~l   84 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDMDL   84 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcCcCH
Confidence            4799999999999999999999885433322    123457889999999999999999988664   8899999 4454


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      .+.                     .|+.+||.      +||+||||+|+||+++++   +.++|+|||++....... ..
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~~l~~~ni~~~~~---~~~~l~d~g~~~~~~~~~~~~  155 (282)
T cd07829          85 KKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHS------HRILHRDLKPQNILINRD---GVLKLADFGLARAFGIPLRTY  155 (282)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCChheEEEcCC---CCEEEecCCcccccCCCcccc
Confidence            433                     56677777      999999999999999985   899999999997754332 22


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC------------------CC
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ------------------LD  184 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~------------------~~  184 (379)
                      ....++..|+||                |+|+++|+|++|.+||.+.+..+.+..+....                  ..
T Consensus       156 ~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07829         156 THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPT  235 (282)
T ss_pred             CccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccccccc
Confidence            334567778888                99999999999999998877665555443211                  00


Q ss_pred             CC-------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         185 FP-------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       185 ~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++       ...++.++..+.++|.+||..||++||++++++.||||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         236 FPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             ccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            11       11223458899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.97  E-value=3.8e-30  Score=238.60  Aligned_cols=203  Identities=14%  Similarity=0.142  Sum_probs=156.7

Q ss_pred             cCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+||+|+||.||+|.+..     ++..++ +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~-ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   90 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVA-VKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLEL   90 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEE-EEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEec
Confidence            489999999999999877     555556 5544321    23458899999999999999999997654   7899998


Q ss_pred             --CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 --RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 --~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                        +|+|.+.                           .|+.|||+      +|++||||||+||+++..+....+||+|||
T Consensus        91 ~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivH~dlkp~nil~~~~~~~~~~kl~dfg  164 (277)
T cd05036          91 MAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE------NHFIHRDIAARNCLLTCKGPGRVAKIADFG  164 (277)
T ss_pred             CCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccchheEEEeccCCCcceEeccCc
Confidence              5555543                           45666666      999999999999999876444579999999


Q ss_pred             cceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         128 ISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       128 ~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      +++.......   .....++..|+||               |+||++|+|++ |..||.+.+..+....+......   .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~---~  241 (277)
T cd05036         165 MARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRL---D  241 (277)
T ss_pred             cccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC---C
Confidence            9986532221   1122334578999               99999999997 99999988877777666544221   1


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ....++..+.+++.+||..+|++|||+.++++|
T Consensus       242 ~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         242 PPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            123578999999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.97  E-value=3.4e-30  Score=239.40  Aligned_cols=199  Identities=13%  Similarity=0.106  Sum_probs=157.1

Q ss_pred             cCcCCCCceEEEEEEEcCC-----CcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTT-----KREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~t-----g~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|.+..+     +..+| +|......    ...+.+|+.+++.++||||+++++++.+   .++++||
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~   89 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVA-IKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSY   89 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEE-EEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEc
Confidence            4789999999999987654     34555 55554322    2458899999999999999999998764   6788888


Q ss_pred             --CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC
Q psy6046          77 --RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN  118 (379)
Q Consensus        77 --~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~  118 (379)
                        ++.+...                                    .|+.|+|+      +||+||||||+||+++++   
T Consensus        90 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~------~gi~H~dlkp~Nil~~~~---  160 (283)
T cd05091          90 CSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS------HHVVHKDLATRNVLVFDK---  160 (283)
T ss_pred             CCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH------cCccccccchhheEecCC---
Confidence              3332211                                    56677776      999999999999999875   


Q ss_pred             CcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHH
Q psy6046         119 CDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNIS  179 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~  179 (379)
                      +.+||+|||+++.......   .....+++.|+||               |+||++|+|++ |..||.+.+..+....+.
T Consensus       161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~  240 (283)
T cd05091         161 LNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIR  240 (283)
T ss_pred             CceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            7899999999876543221   2234467789999               99999999998 999999988888888887


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.....   ...++..+.+|+.+||+.+|.+||++.+++.
T Consensus       241 ~~~~~~~---~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~  278 (283)
T cd05091         241 NRQVLPC---PDDCPAWVYTLMLECWNEFPSRRPRFKDIHS  278 (283)
T ss_pred             cCCcCCC---CCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            7654322   2368999999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG1989|consensus

Probab=99.97  E-value=3.1e-31  Score=265.31  Aligned_cols=199  Identities=21%  Similarity=0.214  Sum_probs=164.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC-CCCcceeeee----------cCcceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK-VEPIEKYYSL----------DPEPLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~-hpnIv~~~~~----------~~~~~~v~   74 (379)
                      .++|.+|||+.||+|++...|..||+++....  .....+.+||++|++|. |||||.|++.          .-++++.|
T Consensus        42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLm  121 (738)
T KOG1989|consen   42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLM  121 (738)
T ss_pred             EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeeh
Confidence            34899999999999999999889997665544  33456899999999999 9999999993          12478999


Q ss_pred             eC--CchhhHH----------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          75 NP--RPPVYQA----------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        75 e~--~g~l~~~----------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      ||  +|.|.+.                      .|+.+||.      ..  |||||||-+|+|++.+   +.+||||||.
T Consensus       122 EyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~------~~pPiIHRDLKiENvLls~~---g~~KLCDFGS  192 (738)
T KOG1989|consen  122 EYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY------LKPPIIHRDLKIENVLLSAD---GNYKLCDFGS  192 (738)
T ss_pred             hhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc------CCCccchhhhhhhheEEcCC---CCEEeCcccc
Confidence            99  5777777                      67888887      77  9999999999999986   8999999999


Q ss_pred             ceeeccCc-cc------c---ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh
Q psy6046         129 SRVILDGI-EI------R---ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISK  180 (379)
Q Consensus       129 a~~~~~~~-~~------~---~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~  180 (379)
                      |....... ..      .   ....|+.|+||                  +|||+||-|+....||.....    -.|..
T Consensus       193 att~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----laIln  268 (738)
T KOG1989|consen  193 ATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----LAILN  268 (738)
T ss_pred             cccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----eeEEe
Confidence            97543221 00      0   13579999999                  999999999999999976533    35777


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+.+|+.  +..|..+++||+.||+.||.+||++-|++.+
T Consensus       269 g~Y~~P~~--p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  269 GNYSFPPF--PNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             ccccCCCC--ccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence            88988874  5789999999999999999999999998864

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.97  E-value=1.6e-30  Score=244.55  Aligned_cols=202  Identities=16%  Similarity=0.139  Sum_probs=155.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEE-EEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREV-VQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~-a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .++||+|+||.||+|.++.+|..+ +++|....    .....+.+|+.++..+ +||||+++++++.+   +|+++||  
T Consensus        12 ~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (303)
T cd05088          12 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   91 (303)
T ss_pred             eeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCC
Confidence            458999999999999998888754 23443332    1234688899999999 89999999998765   8999999  


Q ss_pred             CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCc
Q psy6046          77 RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCD  120 (379)
Q Consensus        77 ~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~  120 (379)
                      +|+|.+.                                    .|++|||+      +|++||||||+||+++.+   +.
T Consensus        92 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~------~gi~H~dlkp~Nili~~~---~~  162 (303)
T cd05088          92 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ------KQFIHRDLAARNILVGEN---YV  162 (303)
T ss_pred             CCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh------CCccccccchheEEecCC---Cc
Confidence            5554431                                    55677777      999999999999999875   89


Q ss_pred             EEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         121 IKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       121 ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +||+|||++.............++..|+||               |+||++|+|+| |.+||.+.+..+....+..+. .
T Consensus       163 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~  241 (303)
T cd05088         163 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGY-R  241 (303)
T ss_pred             EEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCC-c
Confidence            999999998643221111122335568888               99999999998 999998887777766664432 1


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .  ..+..+++++.+|+.+||..+|++||++++++.+
T Consensus       242 ~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         242 L--EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             C--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            1  1223578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.97  E-value=2.6e-30  Score=239.56  Aligned_cols=201  Identities=16%  Similarity=0.178  Sum_probs=156.2

Q ss_pred             ccCcCCCCceEEEEEEEcC-----CCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKT-----TKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ...||+|+||.||+|.+..     ++..+| +|....    .....+.+|+.+++.++||||+++++++.+   .++++|
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~a-ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e   89 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVA-IKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIME   89 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEE-EEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEe
Confidence            3589999999999998653     244566 444332    223458899999999999999999998764   789999


Q ss_pred             C--CchhhHH------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          76 P--RPPVYQA------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        76 ~--~g~l~~~------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                      |  +|+|.+.                              .|+.|||+      .|++||||||+||+++++   +.++|
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~~vH~dlkp~Nil~~~~---~~~~l  160 (277)
T cd05062          90 LMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA------NKFVHRDLAARNCMVAED---FTVKI  160 (277)
T ss_pred             cCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCcchheEEEcCC---CCEEE
Confidence            9  5554432                              45667776      999999999999999975   89999


Q ss_pred             eecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         124 CDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       124 ~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +|||+++.......   .....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+...
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~  240 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLL  240 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC
Confidence            99999876533221   1123456789999               99999999999 79999988887777776665432


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..+   ..+++.+.+++.+||..||++|||+.+++++
T Consensus       241 ~~~---~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         241 DKP---DNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             CCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            222   3578999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=4e-30  Score=234.34  Aligned_cols=205  Identities=24%  Similarity=0.301  Sum_probs=163.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      ...||+|++|.||+|.+..+++.+++ |.....     ..+.+.+|+.+++.++||||+++++...+     +++++|+ 
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~i-k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~   83 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAV-KSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYV   83 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEE-EEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEec
Confidence            35899999999999999999988885 443332     25678999999999999999999887443     6899999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       ++++.+.                    .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||.+......
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~~~h~dl~p~ni~i~~~---~~~~l~d~~~~~~~~~~  154 (260)
T cd06606          84 SGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHS------NGIVHRDIKGANILVDSD---GVVKLADFGCAKRLGDI  154 (260)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEEcCC---CCEEEcccccEEecccc
Confidence             5555543                    56777777      999999999999999985   89999999999887655


Q ss_pred             cc---ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IE---IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~---~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..   .....++..|+||               |+|+++|+|++|..||.... .......+....  ........++..
T Consensus       155 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  232 (260)
T cd06606         155 ETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSG--EPPEIPEHLSEE  232 (260)
T ss_pred             cccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccC--CCcCCCcccCHH
Confidence            42   3456788899999               99999999999999998765 333333333211  112233457999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +.++|.+||..+|.+||++.+++.||||
T Consensus       233 l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         233 AKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             HHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence            9999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.97  E-value=2.4e-30  Score=238.16  Aligned_cols=202  Identities=20%  Similarity=0.208  Sum_probs=157.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ..+||+|+||.||+|++..+|+.+|+++....     .....+.+|+.+++.++||||+++++.+.+   +++++|+  +
T Consensus         7 ~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~   86 (267)
T cd08229           7 EKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADA   86 (267)
T ss_pred             hhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCC
Confidence            45899999999999999999998885433221     233568899999999999999999987654   7899999  4


Q ss_pred             chhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          78 PPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        78 g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +++.+.                        .|+.|||+      +|++|+||||+||+++.+   +.++|+|||++....
T Consensus        87 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~dl~p~nili~~~---~~~~l~dfg~~~~~~  157 (267)
T cd08229          87 GDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS------RRVMHRDIKPANVFITAT---GVVKLGDLGLGRFFS  157 (267)
T ss_pred             CCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CCEEECcchhhhccc
Confidence            555432                        45666766      999999999999999875   789999999987764


Q ss_pred             cCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh--HHHHHHHHhCCCCCCcccccCCCH
Q psy6046         134 DGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD--SETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       134 ~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ... ......|++.|+||               |+|+++|+|++|..||.+...  .+....+.....  ++.....+++
T Consensus       158 ~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  235 (267)
T cd08229         158 SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDY--PPLPSDHYSE  235 (267)
T ss_pred             cCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCC--CCCCcccccH
Confidence            332 23345788899999               999999999999999976543  344444443322  2222346789


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.+++.+||..||.+|||+.++++
T Consensus       236 ~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         236 ELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             HHHHHHHHhcCCCcccCCCHHHHHH
Confidence            9999999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.97  E-value=8.2e-30  Score=233.93  Aligned_cols=197  Identities=13%  Similarity=0.126  Sum_probs=154.0

Q ss_pred             cCCCCceEEEEEEEcCC--CcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchh
Q psy6046          11 GGNRARSSCSRKPEKTT--KREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPV   80 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~t--g~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l   80 (379)
                      ||+|+||.||+|.+...  +..+| +|......    .+.+.+|+.+++.++||||+++++++..  +++++||  +|+|
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~va-vk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L   81 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVA-IKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPL   81 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEE-EEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCH
Confidence            89999999999987533  33455 55554322    3458899999999999999999998654  7899999  6666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc-
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI-  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~-  138 (379)
                      .+.                     .|+.|||.      +|++||||||+||+++.+   +.+||+|||++......... 
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~nil~~~~---~~~kl~dfg~~~~~~~~~~~~  152 (257)
T cd05115          82 NKFLSGKKDEITVSNVVELMHQVSMGMKYLEG------KNFVHRDLAARNVLLVNQ---HYAKISDFGLSKALGADDSYY  152 (257)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------cCeeecccchheEEEcCC---CcEEeccCCccccccCCccce
Confidence            654                     45667776      999999999999999875   88999999999765432211 


Q ss_pred             ---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         139 ---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       139 ---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                         ....+++.|+||               |+|+++|+|++ |..||.+....+....+..+....   .....++++.+
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~  229 (257)
T cd05115         153 KARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLD---CPAECPPEMYA  229 (257)
T ss_pred             eccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCC---CCCCCCHHHHH
Confidence               112235679999               99999999996 999999888877777776654321   12357899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q psy6046         200 FIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +|.+||..+|++||++.++.+
T Consensus       230 li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         230 LMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             HHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=2.8e-30  Score=241.82  Aligned_cols=210  Identities=20%  Similarity=0.225  Sum_probs=157.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      +.||+|+||.||+|.+..+|+.+|+ |....    .....+.+|+.++..+. ||||+++++++.+   .|+++|| .+.
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~   99 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAV-KQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMSTC   99 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEE-EEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccCcC
Confidence            4899999999999999999988885 44332    12344667777666665 9999999998664   8999999 332


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +...                     .|+.|||+     ..||+||||+|+||+++.+   +.+||+|||++.........
T Consensus       100 l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----~~~i~H~dl~p~nill~~~---~~~kL~dfg~~~~~~~~~~~  171 (296)
T cd06618         100 LDKLLKRIQGPIPEDILGKMTVAIVKALHYLKE-----KHGVIHRDVKPSNILLDAS---GNVKLCDFGISGRLVDSKAK  171 (296)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-----hCCEecCCCcHHHEEEcCC---CCEEECccccchhccCCCcc
Confidence            2211                     55667774     1599999999999999875   89999999999766443333


Q ss_pred             cccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         139 RELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       139 ~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ....+++.|+||                   |+|+++|+|++|+.||.... ..+.+..+........+ ....++.++.
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~  250 (296)
T cd06618         172 TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLP-PNEGFSPDFC  250 (296)
T ss_pred             cCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCC-CCCCCCHHHH
Confidence            344567778887                   89999999999999997633 23444444443322111 1124789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|+.+||..||.+|||+++++.||||....
T Consensus       251 ~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  280 (296)
T cd06618         251 SFVDLCLTKDHRKRPKYRELLQHPFIRRYE  280 (296)
T ss_pred             HHHHHHccCChhhCCCHHHHhcChhhhccc
Confidence            999999999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.97  E-value=6.7e-30  Score=234.55  Aligned_cols=199  Identities=16%  Similarity=0.191  Sum_probs=157.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||.||+|.+. ++..+| +|....  ...+.+.+|+.+++.++||||+++++.+.+   .|+++|+  +|+|
T Consensus        11 ~~~lg~g~~g~v~~~~~~-~~~~v~-iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   88 (261)
T cd05072          11 VKKLGAGQFGEVWMGYYN-NSTKVA-VKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSL   88 (261)
T ss_pred             eeecCCcCCceEEEEEec-CCceEE-EEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcH
Confidence            357999999999999865 445566 444332  234678999999999999999999987654   7899999  5666


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      .+.                      .|+.|||+      .|++||||||+||+++.+   +.++|+|||++........ 
T Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~------~~i~H~dl~p~nili~~~---~~~~l~dfg~~~~~~~~~~~  159 (261)
T cd05072          89 LDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER------KNYIHRDLRAANVLVSES---LMCKIADFGLARVIEDNEYT  159 (261)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccccchhhEEecCC---CcEEECCCccceecCCCcee
Confidence            544                      56777777      999999999999999986   8899999999987654321 


Q ss_pred             -ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 -IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 -~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....++..|+||               |+||++|+|++ |..||.+.+..+....+..+. ..+  ....++.++.++
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l  236 (261)
T cd05072         160 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGY-RMP--RMENCPDELYDI  236 (261)
T ss_pred             ccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCC-CCC--CCCCCCHHHHHH
Confidence             1223356679998               99999999998 999999888777777776553 222  224688999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|++|||++++.+
T Consensus       237 i~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         237 MKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             HHHHccCCcccCcCHHHHHH
Confidence            99999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.97  E-value=3.7e-30  Score=241.27  Aligned_cols=203  Identities=14%  Similarity=0.099  Sum_probs=155.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEE-EEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREV-VQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~-a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...+||+|+||.||+|++..+|..+ +++|....    ...+.+.+|+.+++++ +||||+++++++.+   +|+++|| 
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~   85 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYA   85 (297)
T ss_pred             eeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEec
Confidence            3568999999999999998887643 23444432    2235688999999999 69999999998765   7899999 


Q ss_pred             -CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          77 -RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        77 -~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                       +|+|.+.                                    .|+.|||+      +||+||||||+||+++.+   +
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~------~~ivH~dlkp~Nill~~~---~  156 (297)
T cd05089          86 PYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE------KQFIHRDLAARNVLVGEN---L  156 (297)
T ss_pred             CCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCcCCcceEEECCC---C
Confidence             5555322                                    46677777      999999999999999875   8


Q ss_pred             cEEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCC
Q psy6046         120 DIKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQL  183 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~  183 (379)
                      .+||+|||++..............+..|+||               |+||++|+|++ |..||.+.+..+....+..+..
T Consensus       157 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~  236 (297)
T cd05089         157 ASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR  236 (297)
T ss_pred             eEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCC
Confidence            8999999998643221111112234568888               99999999997 9999999888887777765432


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..   ....+++.+.+|+.+||..+|.+|||+++++..
T Consensus       237 ~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         237 ME---KPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             CC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            11   123588999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=5.1e-30  Score=234.05  Aligned_cols=204  Identities=17%  Similarity=0.175  Sum_probs=165.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|.+..+|+.+|+++....    .....+.+|+.+++.++||||+++++++.+   .|+++||  ++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFG   84 (256)
T ss_pred             eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCC
Confidence            45799999999999999999988885443221    224467899999999999999999887654   8999998  44


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      ++...                        .|+.|||+      .|++|+||+|+||+++.+   +.+||+|||++.....
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~------~~i~h~~l~~~ni~~~~~---~~~kl~d~g~~~~~~~  155 (256)
T cd08530          85 DLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE------QKILHRDLKSANILLVAN---DLVKIGDLGISKVLKK  155 (256)
T ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh------CCcccCCCCcceEEEecC---CcEEEeeccchhhhcc
Confidence            44332                        45666666      999999999999999985   7899999999977654


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      . ......+++.|+||               |+|+++|+|++|+.||...+..+....+..+......   ..++.++++
T Consensus       156 ~-~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  231 (256)
T cd08530         156 N-MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIP---PIYSQDLQN  231 (256)
T ss_pred             C-CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCc---hhhCHHHHH
Confidence            4 33345678889998               9999999999999999988887777776665443222   367899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++.+||..+|.+|||+.+++.||++
T Consensus       232 li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         232 FIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             HHHHHcCCCcccCCCHHHHhcCCCC
Confidence            9999999999999999999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.97  E-value=6.6e-30  Score=237.10  Aligned_cols=200  Identities=15%  Similarity=0.094  Sum_probs=156.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEE---EEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREV---VQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      ++||+|+||+||+|++..+|..+   +++|....    .....+.+|+.+++.+.||||+++++++..  .++++|+  +
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~   92 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPY   92 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCC
Confidence            48999999999999988887752   33565432    223468899999999999999999987654  6788888  5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |.+++.                     .|+.|||+      .||+||||||+||+++++   +.+||+|||+++......
T Consensus        93 g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~iiH~dlkp~Nil~~~~---~~~kL~dfG~~~~~~~~~  163 (279)
T cd05109          93 GCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEE------VRLVHRDLAARNVLVKSP---NHVKITDFGLARLLDIDE  163 (279)
T ss_pred             CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccccccceEEEcCC---CcEEECCCCceeeccccc
Confidence            666554                     55666666      999999999999999875   789999999998764332


Q ss_pred             c---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 E---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .   .....+++.|+||               |+||++|+|++ |..||...........+..+.....   ...++.++
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  240 (279)
T cd05109         164 TEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQ---PPICTIDV  240 (279)
T ss_pred             ceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCC---CccCCHHH
Confidence            2   1122345679999               99999999998 9999988777666666655432221   23578999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+++.+||..||++||++.+++.
T Consensus       241 ~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         241 YMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.97  E-value=9.9e-30  Score=233.49  Aligned_cols=199  Identities=16%  Similarity=0.175  Sum_probs=156.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~   81 (379)
                      .+.||+|+||.||+|.+..++ .+| +|....  ...+.+.+|+.+++.++|||++++++++.+  .|++|||  +|+|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~-~~~-lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~   88 (260)
T cd05069          11 DVKLGQGCFGEVWMGTWNGTT-KVA-IKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLL   88 (260)
T ss_pred             eeeecCcCCCeEEEEEEcCCc-eEE-EEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHH
Confidence            458999999999999876654 455 454433  223568899999999999999999988654  7899999  55665


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      +.                      .|+.|||+      .|++||||||+||+++++   +.++|+|||++........  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~------~~i~H~dl~~~Nill~~~---~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05069          89 DFLKEGDGKYLKLPQLVDMAAQIADGMAYIER------MNYIHRDLRAANILVGDN---LVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeecccCcceEEEcCC---CeEEECCCccceEccCCcccc
Confidence            44                      45666666      999999999999999985   8899999999987643321  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....++..|+||               |+|+++|+|++ |.+||.+....+....+..+.. .  ......+..+.+++
T Consensus       160 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~li  236 (260)
T cd05069         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYR-M--PCPQGCPESLHELM  236 (260)
T ss_pred             cCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-C--CCCcccCHHHHHHH
Confidence            1223456679999               99999999999 9999998888777777665422 1  12246789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy6046         202 AKILIKNPMERMTAKEALK  220 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||..||.+||+++++++
T Consensus       237 ~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         237 KLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             HHHccCCcccCcCHHHHHH
Confidence            9999999999999999876

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.97  E-value=9.3e-30  Score=232.61  Aligned_cols=200  Identities=19%  Similarity=0.178  Sum_probs=161.5

Q ss_pred             cCcCCCCceEEEEEEEcCC---CcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTT---KREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~t---g~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++||+|+||.||+|.+...   +..++ +|......    ...+.+|+++++.++||||+++++++.+   +++++||  
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~-ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVA-VKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEE-eEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEecc
Confidence            3699999999999998865   76777 45444321    4678999999999999999999988765   8999999  


Q ss_pred             CchhhHH-----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 RPPVYQA-----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 ~g~l~~~-----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      +|+|.+.                             .|+.|||+      +|++||||||+||+++.+   +.++|+|||
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~------~~i~H~di~p~nili~~~---~~~~l~dfg  150 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS------KKFVHRDLAARNCLVGED---LVVKISDFG  150 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc------CCcccCccCcceEEECCC---CcEEEcccc
Confidence            4444322                             55677777      999999999999999986   899999999


Q ss_pred             cceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         128 ISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       128 ~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      .+.......   ......+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+...   .
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~---~  227 (262)
T cd00192         151 LSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRL---P  227 (262)
T ss_pred             cccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---C
Confidence            998765432   23345678889999               99999999999 69999998888888887764322   1


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ....+|+++.+++.+||..+|.+|||+.+++++
T Consensus       228 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         228 KPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             CCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            223579999999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=5.4e-30  Score=238.56  Aligned_cols=208  Identities=23%  Similarity=0.316  Sum_probs=165.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.+..++..+++ |......  ...+.+|+++++.++|||++++++.+..   .|+++||  +++|.
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~i-K~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  103 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAI-KKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLT  103 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEE-EEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHH
Confidence            3899999999999999988888874 5444332  4678899999999999999999987653   8999999  45655


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      +.                     .|+.|||+      .|++|+||+|+||+++.+   +.++|+|||++....... ...
T Consensus       104 ~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~------~gi~H~dl~p~ni~i~~~---~~~~l~d~~~~~~~~~~~~~~~  174 (286)
T cd06614         104 DIITQNFVRMNEPQIAYVCREVLQGLEYLHS------QNVIHRDIKSDNILLSKD---GSVKLADFGFAAQLTKEKSKRN  174 (286)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCChhhEEEcCC---CCEEECccchhhhhccchhhhc
Confidence            54                     44566666      999999999999999975   899999999986543322 223


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...+++.|+||               |+|+++|+|++|+.||.+.+.......+....... ......++..+.++|.+|
T Consensus       175 ~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~  253 (286)
T cd06614         175 SVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPP-LKNPEKWSPEFKDFLNKC  253 (286)
T ss_pred             cccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCC-CcchhhCCHHHHHHHHHH
Confidence            34578889999               99999999999999998877766555554433221 112234789999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCC
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      |..+|.+|||+.++++||||...
T Consensus       254 l~~~p~~Rpt~~~il~~~~~~~~  276 (286)
T cd06614         254 LVKDPEKRPSAEELLQHPFLKKA  276 (286)
T ss_pred             hccChhhCcCHHHHhhChHhhcc
Confidence            99999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.97  E-value=8.9e-30  Score=234.27  Aligned_cols=200  Identities=18%  Similarity=0.198  Sum_probs=157.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchh
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPV   80 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l   80 (379)
                      ..+.||+|+||.||+|++..++ .+| +|....  ...+.+.+|+.+++.++||||+++++...+  .|+++||  +|++
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~-~va-lK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L   87 (262)
T cd05071          10 LEVKLGQGCFGEVWMGTWNGTT-RVA-IKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSL   87 (262)
T ss_pred             EeeecCCCCCCcEEEEEecCCc-eEE-EEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCCcH
Confidence            3458999999999999987664 455 455443  223568999999999999999999987654  7899999  5555


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      .+.                      .|+.|+|+      .|++||||||+||+++.+   +.++|+|||.+.........
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~------~~i~H~dl~p~Nill~~~---~~~~L~dfg~~~~~~~~~~~  158 (262)
T cd05071          88 LDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER------MNYVHRDLRAANILVGEN---LVCKVADFGLARLIEDNEYT  158 (262)
T ss_pred             HHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH------CCccccccCcccEEEcCC---CcEEeccCCceeeccccccc
Confidence            443                      56677777      999999999999999975   88999999999866433221


Q ss_pred             --cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 --RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 --~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                        ....++..|+||               |+|+++|+|++ |.+||.+....+....+..+.. .+  ....++..+.++
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l  235 (262)
T cd05071         159 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR-MP--CPPECPESLHDL  235 (262)
T ss_pred             cccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCC-CC--CccccCHHHHHH
Confidence              223456679999               99999999999 8999998887777777655431 11  123578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..||++|||+.++++
T Consensus       236 i~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         236 MCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             HHHHccCCcccCCCHHHHHH
Confidence            99999999999999999876

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=3.5e-30  Score=236.30  Aligned_cols=204  Identities=21%  Similarity=0.211  Sum_probs=159.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEE--EEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQ--WKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~--~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...||+|+||.||+|.+..++..+++  .|....     .....+..|+.+++.++||||+++++.+.+   +|+++|| 
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (260)
T cd08222           5 QQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYC   84 (260)
T ss_pred             eeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeC
Confidence            45899999999999998887655432  222221     223457789999999999999999987654   7899999 


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       ++++...                        .|+.|||+      .|++|+||+|+||++++    +.++|+|||++..
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~h~~l~~~nili~~----~~~~l~d~g~~~~  154 (260)
T cd08222          85 EGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ------RRILHRDLKAKNIFLKN----NLLKIGDFGVSRL  154 (260)
T ss_pred             CCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH------cCccccCCChhheEeec----CCEeecccCceee
Confidence             5555432                        45666666      99999999999999975    5799999999977


Q ss_pred             eccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         132 ILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       132 ~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..... ......|++.|+||               |+|+++|+|++|..||.+.+.......+..+..+.   ....++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  231 (260)
T cd08222         155 LMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPS---LPETYSR  231 (260)
T ss_pred             cCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCC---CcchhcH
Confidence            64332 23345678889998               99999999999999998877766666665543322   2236789


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++.++|.+||..+|++||++.+++.||||
T Consensus       232 ~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         232 QLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence            99999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.2e-29  Score=232.50  Aligned_cols=199  Identities=17%  Similarity=0.165  Sum_probs=155.8

Q ss_pred             cCcCCCCceEEEEEEEcCCC---cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTK---REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg---~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      +.||+|+||.||+|....++   ..+| +|.....    ....+.+|+.+++.+.||||+++++++..  +++++|+  +
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVA-VKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEE-EEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCC
Confidence            36999999999999876654   4555 5554432    23468899999999999999999988654  7899999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|.+.                    .|+.|||.      .|++||||||+||+++.+   +.+||+|||+++.......
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~------~~i~H~di~p~nili~~~---~~~kl~df~~~~~~~~~~~  150 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLES------KHFVHRDLAARNVLLVNR---HQAKISDFGMSRALGAGSD  150 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhh------cCeeccCcccceEEEcCC---CcEEeccccccceeecCCc
Confidence            666654                    44556665      999999999999999885   8999999999987643322


Q ss_pred             c-cc---cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         138 I-RE---LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       138 ~-~~---~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      . ..   ..++..|+||               |+|+++|+|++ |.+||...+..+....+......   .....+++.+
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l  227 (257)
T cd05060         151 YYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERL---PRPEECPQEI  227 (257)
T ss_pred             ccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcC---CCCCCCCHHH
Confidence            1 11   1234579999               99999999998 99999888777777777655322   2224678999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .++|.+||..+|++|||+.+++.
T Consensus       228 ~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         228 YSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             HHHHHHHhcCChhhCcCHHHHHH
Confidence            99999999999999999999876

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.97  E-value=1.2e-29  Score=235.66  Aligned_cols=201  Identities=14%  Similarity=0.116  Sum_probs=157.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEE---EEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREV---VQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      .+.||+|+||.||+|.+..+|..+   +++|......    ...+..|+.+++.++||||+++++++..  .++++|+  
T Consensus        12 ~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~   91 (279)
T cd05111          12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSP   91 (279)
T ss_pred             ccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCC
Confidence            358999999999999998888753   2345443321    2456778889999999999999998654  6788888  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      .|++||||||+||+++.+   +.+||+|||+++.....
T Consensus        92 ~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~iiH~dlkp~nili~~~---~~~kl~Dfg~~~~~~~~  162 (279)
T cd05111          92 LGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEE------HRMVHRNLAARNILLKSD---SIVQIADFGVADLLYPD  162 (279)
T ss_pred             CCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCEeccccCcceEEEcCC---CcEEEcCCccceeccCC
Confidence            6777655                     55677777      999999999999999875   89999999999876433


Q ss_pred             cc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..   .....++..|+||               |+||++|+|++ |..||.+.........+..+.....+   ..++.+
T Consensus       163 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  239 (279)
T cd05111         163 DKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQP---QICTID  239 (279)
T ss_pred             CcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCC---CCCCHH
Confidence            21   2234466789999               99999999998 99999988777666666555433222   246789


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+++.+||..||++|||+.++++
T Consensus       240 ~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         240 VYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHH
Confidence            999999999999999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.97  E-value=7.1e-30  Score=233.80  Aligned_cols=198  Identities=11%  Similarity=0.084  Sum_probs=156.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC--Cchh
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP--RPPV   80 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~--~g~l   80 (379)
                      ...+||+|+||.||+|...  |..+|++..........+.+|+.+++.++|||++++++++.    ..|+++||  +|+|
T Consensus        10 ~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L   87 (256)
T cd05082          10 LLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL   87 (256)
T ss_pred             eeeeecccCCCeEEEEEEc--CCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcH
Confidence            3468999999999999754  66777433333334457899999999999999999998642    27899999  5566


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      .+.                      .|+.|||+      +|++||||||+||+++.+   +.+||+|||++.......  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~nil~~~~---~~~kl~dfg~~~~~~~~~--  156 (256)
T cd05082          88 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA------NNFVHRDLAARNVLVSED---NVAKVSDFGLTKEASSTQ--  156 (256)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeccccchheEEEcCC---CcEEecCCccceeccccC--
Confidence            554                      45666666      999999999999999875   899999999987653322  


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....++..|+||               |+||++|+|++ |++||...+..+....+..+..   ....+.+++.+.+++.
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~  233 (256)
T cd05082         157 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK---MDAPDGCPPVVYDVMK  233 (256)
T ss_pred             CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCC---CCCCCCCCHHHHHHHH
Confidence            233445679999               99999999997 9999998888777777765432   2223468999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..+|++|||+.++++
T Consensus       234 ~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         234 QCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             HHhcCChhhCcCHHHHHH
Confidence            999999999999999976

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.97  E-value=4e-30  Score=266.23  Aligned_cols=205  Identities=17%  Similarity=0.152  Sum_probs=156.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ....||+|+||.||+|++..+|+.||+++....     ....++.+|+++++.++||||+++++++.+   .|++|||  
T Consensus         6 Ii~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~e   85 (932)
T PRK13184          6 IIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIE   85 (932)
T ss_pred             EEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCC
Confidence            345899999999999999999999985544322     113468899999999999999999998764   7999999  


Q ss_pred             CchhhHH-------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          77 RPPVYQA-------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        77 ~g~l~~~-------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                      +|+|.+.                               .|+.|||+      +||+||||||+||+++.+   +.++|+|
T Consensus        86 GGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs------~GIIHRDLKPeNILLd~d---g~vKLiD  156 (932)
T PRK13184         86 GYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS------KGVLHRDLKPDNILLGLF---GEVVILD  156 (932)
T ss_pred             CCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH------CCccccCCchheEEEcCC---CCEEEEe
Confidence            6655432                               45677777      999999999999999875   8899999


Q ss_pred             cccceeeccCc-------------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh
Q psy6046         126 FEISRVILDGI-------------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD  171 (379)
Q Consensus       126 FG~a~~~~~~~-------------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~  171 (379)
                      ||+++......                   .....+||+.|+||               |+||++|+|++|..||.+...
T Consensus       157 FGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~  236 (932)
T PRK13184        157 WGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKG  236 (932)
T ss_pred             cCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch
Confidence            99998652110                   11235799999999               999999999999999987655


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ............ .....+..+++.+.+++.+||..||++||+..+.+.+
T Consensus       237 ~ki~~~~~i~~P-~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        237 RKISYRDVILSP-IEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             hhhhhhhhccCh-hhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            443322111110 0011124688999999999999999999976665543

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.97  E-value=7.2e-30  Score=235.12  Aligned_cols=202  Identities=15%  Similarity=0.151  Sum_probs=157.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCC--cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK--REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg--~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ...||+|+||+||+|.+..++  ...+++|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||  
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~   88 (266)
T cd05033           9 EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYME   88 (266)
T ss_pred             eeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCC
Confidence            358999999999999987653  233445654432    23457889999999999999999998654   7999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++++   +.++|+|||++......
T Consensus        89 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~------~~i~H~di~p~nili~~~---~~~~l~dfg~~~~~~~~  159 (266)
T cd05033          89 NGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSE------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCcceEEEcCC---CCEEECccchhhccccc
Confidence            5555544                     45677777      999999999999999985   88999999999876421


Q ss_pred             c-ccc--ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 I-EIR--ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~-~~~--~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      . ...  ...+++.|+||               |+|+++|+|++ |..||...+..+....+..+... +.  ...+++.
T Consensus       160 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~  236 (266)
T cd05033         160 EATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRL-PP--PMDCPSA  236 (266)
T ss_pred             ccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCC-CC--CCCCCHH
Confidence            1 111  12345679998               99999999998 99999888877777777655322 21  1357899


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+++.+||..+|++||++.+++++
T Consensus       237 l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         237 LYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHH
Confidence            9999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=3.7e-30  Score=242.88  Aligned_cols=210  Identities=15%  Similarity=0.140  Sum_probs=153.8

Q ss_pred             CcCCC--CceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNR--ARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G--~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +||+|  ++|.||.+++..+|+.||+++...    ......+.+|+.+++.++||||+++++++.+   .|+++||  +|
T Consensus         5 ~i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhhHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            34444  556677777778999888544322    2234579999999999999999999887654   7999999  45


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .+...                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||.+.......
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~------~~ivH~dlk~~Nili~~~---~~~kl~d~~~~~~~~~~~  155 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHS------KGFIHRSVKASHILLSGD---GKVVLSGLRYSVSMIKHG  155 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCcceEEEecC---CceEEecCccceeecccc
Confidence            55433                      56788887      999999999999999975   899999999987653221


Q ss_pred             c--------ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC-------
Q psy6046         137 E--------IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD-------  184 (379)
Q Consensus       137 ~--------~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~-------  184 (379)
                      .        .....++..|+||                 |+||++|+|++|+.||..............+...       
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  235 (314)
T cd08216         156 KRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKST  235 (314)
T ss_pred             ccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCc
Confidence            1        2234466778888                 9999999999999999875543332211111110       


Q ss_pred             -----------------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         185 -----------------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       185 -----------------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                             .+......+++++.+|+.+||..||++|||++++|+||||+...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         236 YPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             hhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhc
Confidence                                   00011123457889999999999999999999999999998654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.97  E-value=1.5e-29  Score=230.65  Aligned_cols=198  Identities=17%  Similarity=0.144  Sum_probs=154.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ++||+|+||.||+|... ++..+| +|.....    ....+.+|+++++.++||||+++++++.+   .++++||  +|+
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a-~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVA-VKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEE-EEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            47999999999999865 566677 4543321    12458899999999999999999988664   8999999  666


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +...                     .|+.|+|.      +|++||||||+||+++.+   +.+||+|||++.........
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~~~H~dl~p~nili~~~---~~~~l~d~g~~~~~~~~~~~  149 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLES------KNCIHRDLAARNCLVGEN---NVLKISDFGMSRQEDDGIYS  149 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecccChheEEEcCC---CeEEECCCccceeccccccc
Confidence            6554                     45666666      999999999999999875   88999999999764332211


Q ss_pred             --cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 --RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 --~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                        ....+++.|+||               |+|+++|++++ |..||.+.........+..+...   .....++..+.++
T Consensus       150 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  226 (250)
T cd05085         150 SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRM---SCPQKCPDDVYKV  226 (250)
T ss_pred             cCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCC---CCCCCCCHHHHHH
Confidence              112345679999               99999999998 99999988777777666654321   1223578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|.+|||+.++++
T Consensus       227 i~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         227 MQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             HHHHcccCcccCCCHHHHHH
Confidence            99999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.97  E-value=8e-30  Score=233.21  Aligned_cols=198  Identities=13%  Similarity=0.130  Sum_probs=157.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      ...+||+|+||.||+|.  .+++.+|+++.........+.+|+.+++.++||||+++++++..  .|+++||  +|+|.+
T Consensus        10 ~~~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~   87 (254)
T cd05083          10 LGEIIGEGEFGAVLQGE--YTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVN   87 (254)
T ss_pred             eeeeeccCCCCceEecc--cCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCCHHH
Confidence            34589999999999986  56777775444333345678999999999999999999987554  8899999  566655


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      .                      .|+.|||+      .|++||||||+||+++.+   +.+||+|||++......  ...
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~~~H~dl~p~nili~~~---~~~kl~Dfg~~~~~~~~--~~~  156 (254)
T cd05083          88 FLRTRGRALVSVIQLLQFSLDVAEGMEYLES------KKLVHRDLAARNILVSED---GVAKVSDFGLARVGSMG--VDN  156 (254)
T ss_pred             HHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccccCcceEEEcCC---CcEEECCCccceecccc--CCC
Confidence            4                      45566666      999999999999999875   89999999999764322  122


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...+..|+||               |+|+++|+|++ |++||.+.+..+....+.++....+   ...+++.+.+++.+|
T Consensus       157 ~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~  233 (254)
T cd05083         157 SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEP---PEGCPADVYVLMTSC  233 (254)
T ss_pred             CCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCC---CCcCCHHHHHHHHHH
Confidence            3345678888               99999999997 9999998888777777766532222   246889999999999


Q ss_pred             cccCCCCCCCHHHHhc
Q psy6046         205 LIKNPMERMTAKEALK  220 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~  220 (379)
                      |..+|.+||++++++.
T Consensus       234 l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         234 WETEPKKRPSFHKLRE  249 (254)
T ss_pred             cCCChhhCcCHHHHHH
Confidence            9999999999999876

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.97  E-value=1.9e-29  Score=231.56  Aligned_cols=199  Identities=17%  Similarity=0.197  Sum_probs=156.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~   81 (379)
                      ...||+|+||.||+|.+. ++..+|+ |....  ...+.+.+|+.+++.++||++++++++..+  .|+++||  +|+|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~-~~~~~~~-k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~   88 (260)
T cd05070          11 IKKLGNGQFGEVWMGTWN-GNTKVAV-KTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGSLL   88 (260)
T ss_pred             hheeccccCceEEEEEec-CCceeEE-EEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCcHH
Confidence            357999999999999866 4445664 44332  234578999999999999999999988654  7899999  55655


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      +.                      .|+.|||+      .||+||||||+||+++++   +.++|+|||++........  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~------~~i~H~di~p~Nili~~~---~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05070          89 DFLKDGEGRALKLPNLVDMAAQVAAGMAYIER------MNYIHRDLRSANILVGDG---LVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCccceEEEeCC---ceEEeCCceeeeeccCccccc
Confidence            43                      56777777      999999999999999985   8999999999987644321  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....++..|+||               |+|+++|+|++ |.+||.+.+..+....+..+. ..  +.....+..+.+|+
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~li  236 (260)
T cd05070         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGY-RM--PCPQDCPISLHELM  236 (260)
T ss_pred             ccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC--CCCCcCCHHHHHHH
Confidence            1123345679999               99999999999 999999888877777776542 11  12246789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy6046         202 AKILIKNPMERMTAKEALK  220 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||..+|.+|||+.++.+
T Consensus       237 ~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         237 LQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             HHHcccCcccCcCHHHHHH
Confidence            9999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.97  E-value=1.4e-29  Score=232.38  Aligned_cols=199  Identities=16%  Similarity=0.124  Sum_probs=152.5

Q ss_pred             cCcCCCCceEEEEEEEcCCC---cEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTK---REVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg---~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~-   76 (379)
                      ++||+|+||.||+|.+...+   ..+| +|....    .....+.+|+.+++.++||||+++++++..    .|+++|| 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCA-VKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEE-EEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            36899999999999875432   3345 554432    224568899999999999999999996432    7899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|++.+.                     .|+.|||.      .|++||||||+||+++++   +.+||+|||+++....
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlk~~nili~~~---~~~kl~dfg~~~~~~~  150 (262)
T cd05058          80 KHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS------KKFVHRDLAARNCMLDES---FTVKVADFGLARDIYD  150 (262)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCccccccCcceEEEcCC---CcEEECCccccccccC
Confidence             5665544                     55666776      999999999999999875   7899999999976533


Q ss_pred             Cc-----cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         135 GI-----EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       135 ~~-----~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ..     ......+++.|+||               |+||++|+|++ |.+||...+..+....+..+.....+   ..+
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  227 (262)
T cd05058         151 KEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQP---EYC  227 (262)
T ss_pred             CcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCC---CcC
Confidence            21     11223456789999               99999999999 57788877777777666655322212   246


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.+.+++.+||..+|++||++.+++.
T Consensus       228 ~~~~~~li~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         228 PDPLYEVMLSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.4e-29  Score=232.00  Aligned_cols=200  Identities=17%  Similarity=0.139  Sum_probs=155.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||.||+|.+.. +..+| +|.....  ....+.+|+.+++.++||||+++++++.+   .|+++||  ++.|
T Consensus         9 ~~~lg~G~~~~v~~~~~~~-~~~~~-iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   86 (256)
T cd05059           9 LKELGSGQFGVVHLGKWRG-KIDVA-IKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCL   86 (256)
T ss_pred             hhhhccCCCceEEEeEecC-CccEE-EEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCH
Confidence            4589999999999998764 44566 4544432  23568899999999999999999988665   7899999  5666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      .+.                     .|+.|||+      .||+||||||+||+++.+   +.+||+|||+++...+.....
T Consensus        87 ~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dl~p~ni~i~~~---~~~kl~dfg~~~~~~~~~~~~  157 (256)
T cd05059          87 LNYLRERKGKLGTEWLLDMCSDVCEAMEYLES------NGFIHRDLAARNCLVGED---NVVKVSDFGLARYVLDDQYTS  157 (256)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCcccccccHhhEEECCC---CcEEECCcccceecccccccc
Confidence            544                     45666666      999999999999999985   889999999997654332111


Q ss_pred             --ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 --ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 --~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                        ...++..|+||               |+|+++|+|++ |.+||.+.+..+....+..+.. .  .....+++.+.+++
T Consensus       158 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~li  234 (256)
T cd05059         158 SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYR-L--YRPKLAPTEVYTIM  234 (256)
T ss_pred             cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCc-C--CCCCCCCHHHHHHH
Confidence              11233469999               99999999999 8999988877777777665421 1  12235799999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy6046         202 AKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||..+|++|||+.++++.
T Consensus       235 ~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         235 YSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             HHHhcCChhhCcCHHHHHHH
Confidence            99999999999999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.97  E-value=7e-30  Score=234.28  Aligned_cols=199  Identities=16%  Similarity=0.168  Sum_probs=159.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ...||.|+||.||+|.+.. +..++ +|.....   ....+..|+.+++.++||||+++++++.+   +|+++||  +|+
T Consensus        11 ~~~ig~g~~~~vy~~~~~~-~~~~~-~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (261)
T cd05148          11 ERKLGSGYFGEVWEGLWKN-RVRVA-IKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGS   88 (261)
T ss_pred             hhhhccCCCccEEEeEecC-CCcEE-EEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCC
Confidence            4589999999999999887 66666 4554432   34678999999999999999999987654   7899999  556


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |.+.                      .|+.|||+      +||+||||||+||+++++   +.+||+|||.+........
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~------~~i~h~dl~~~nilv~~~---~~~kl~d~g~~~~~~~~~~  159 (261)
T cd05148          89 LLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE------QNSIHRDLAARNILVGED---LVCKVADFGLARLIKEDVY  159 (261)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccccCcceEEEcCC---ceEEEccccchhhcCCccc
Confidence            6554                      56777777      999999999999999986   8999999999976543321


Q ss_pred             -ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 -IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 -~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....++..|+||               |+|+++|+|++ |+.||.+.+..+.+..+..+.. .+  ....+++.+.++
T Consensus       160 ~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  236 (261)
T cd05148         160 LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYR-MP--CPAKCPQEIYKI  236 (261)
T ss_pred             cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCc-CC--CCCCCCHHHHHH
Confidence             1223345678888               99999999998 8999998888778777775422 12  224689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..||.+|||+.++++
T Consensus       237 i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         237 MLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             HHHHcCCCchhCcCHHHHHH
Confidence            99999999999999999876

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.97  E-value=2e-29  Score=231.16  Aligned_cols=200  Identities=16%  Similarity=0.132  Sum_probs=156.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ...||+|+||.||+|.... +..+| +|.....  ....+.+|+.+++.++||||+++++++.+   .|+++||  +|.+
T Consensus         9 ~~~lg~G~~~~vy~~~~~~-~~~~a-ik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l   86 (256)
T cd05113           9 LKELGTGQFGVVKYGKWRG-QYDVA-IKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCL   86 (256)
T ss_pred             eeEecCcccceEEEEEecC-CCcEE-EEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcH
Confidence            3579999999999998654 33466 4544332  23568999999999999999999998764   7999999  5555


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      .+.                     .|+.|||+      .|++|+||||+||+++.+   +.+||+|||.++.........
T Consensus        87 ~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~nili~~~---~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05113          87 LNYLREHGKRFQPSQLLEMCKDVCEGMAYLES------KQFIHRDLAARNCLVDDQ---GCVKVSDFGLSRYVLDDEYTS  157 (256)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccccCcceEEEcCC---CCEEECCCccceecCCCceee
Confidence            443                     55677776      999999999999999875   899999999987654432211


Q ss_pred             --ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         140 --ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       140 --~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                        ...++..|+||               |+|+++|+|++ |..||...+..+....+..+......   ...++.+.+++
T Consensus       158 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li  234 (256)
T cd05113         158 SVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRP---HLASEKVYAIM  234 (256)
T ss_pred             cCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCC---CCCCHHHHHHH
Confidence              12345678888               99999999998 99999888877777777766443322   24689999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy6046         202 AKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||..+|.+|||+.+++.+
T Consensus       235 ~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         235 YSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             HHHcCCCcccCCCHHHHHHh
Confidence            99999999999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.3e-29  Score=234.58  Aligned_cols=200  Identities=16%  Similarity=0.170  Sum_probs=157.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCC-----cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK-----REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg-----~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ...||+|+||.||+|.+...+     ..+| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++|
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~a-ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   89 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVA-IKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVME   89 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEE-EEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEe
Confidence            348999999999999987544     5566 5554432    23458899999999999999999998665   899999


Q ss_pred             C--CchhhHH------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          76 P--RPPVYQA------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        76 ~--~g~l~~~------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                      |  +|+|.+.                              .|+.|||+      .||+||||||+||+++.+   +.+||
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~di~p~nill~~~---~~~kl  160 (277)
T cd05032          90 LMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA------KKFVHRDLAARNCMVAED---LTVKI  160 (277)
T ss_pred             cCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh------CCccccccChheEEEcCC---CCEEE
Confidence            9  5565432                              44566665      999999999999999985   89999


Q ss_pred             eecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         124 CDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       124 ~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +|||+++......   ......++..|+||               |+||++|++++ |.+||.+.+..+....+..+...
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~  240 (277)
T cd05032         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHL  240 (277)
T ss_pred             CCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCC
Confidence            9999987654332   12234567789999               99999999998 99999988888877777654322


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .   ....++..+.+++.+||..+|++|||+.+++.
T Consensus       241 ~---~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         241 D---LPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             C---CCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            1   12346899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG1187|consensus

Probab=99.97  E-value=4.4e-30  Score=245.53  Aligned_cols=210  Identities=17%  Similarity=0.173  Sum_probs=153.0

Q ss_pred             CCccCcc-CcCCCCceEEEEEEEcCCCcEEEEEEeccc-cc--chHHHHHHHHHHhCCCCCcceeeeecC----cceEEe
Q psy6046           3 TDPMASH-VGGNRARSSCSRKPEKTTKREVVQWKERNV-SQ--GVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGL   74 (379)
Q Consensus         3 ~d~~~~~-~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~--~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~   74 (379)
                      |++|... +||+|+||.||+|.-..+ ..|| +|.... ..  ...+.+|+.++.+++|||+|++++++.    +.++|+
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vA-VK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVY  151 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSDG-TVVA-VKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVY  151 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECCC-CEEE-EEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEE
Confidence            6677774 999999999999996554 6667 454443 22  345999999999999999999999987    379999


Q ss_pred             eC--CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          75 NP--RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        75 e~--~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ||  .|+|.+.                      .|++|||.-.   ..-|+||||||+|||+|++   ...||+|||+|+
T Consensus       152 Eym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~---~~~iiHrDiKssNILLD~~---~~aKlsDFGLa~  225 (361)
T KOG1187|consen  152 EYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGC---PPPIIHRDIKSSNILLDED---FNAKLSDFGLAK  225 (361)
T ss_pred             EccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCC---CCCEecCCCCHHHeeECCC---CCEEccCccCcc
Confidence            99  6666554                      5678888710   1249999999999999985   999999999997


Q ss_pred             eecc-Ccccccc-ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC------hHHHH-HHHHhCCCC-C
Q psy6046         131 VILD-GIEIREL-LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET------DSETF-RNISKAQLD-F  185 (379)
Q Consensus       131 ~~~~-~~~~~~~-~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~------~~~~~-~~i~~~~~~-~  185 (379)
                      ..+. .....+. .||..|+||               |+|+++.|++||+.|.....      ..+.. ..+..+.+. .
T Consensus       226 ~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~ei  305 (361)
T KOG1187|consen  226 LGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREI  305 (361)
T ss_pred             cCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhhe
Confidence            7654 4333333 899999999               99999999999998886432      11111 122222111 1


Q ss_pred             -Ccccc-cCCC--HH---HHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         186 -PDELF-EDIS--PE---AKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       186 -~~~~~-~~~s--~~---~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                       .+.+. ...+  ..   +..+..+|+..+|..||++.|+..
T Consensus       306 iD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  306 VDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             eCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence             11111 1223  22   456778999999999999999754

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.97  E-value=2e-29  Score=231.31  Aligned_cols=199  Identities=15%  Similarity=0.138  Sum_probs=157.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~   81 (379)
                      ...||+|+||.||+|... +++.+| +|....  .....+.+|+.+++.++||||+++++++.+  .|+++|+  +|++.
T Consensus        11 ~~~ig~G~~g~v~~~~~~-~~~~~a-~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~   88 (260)
T cd05067          11 VKKLGAGQFGEVWMGYYN-GHTKVA-IKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLV   88 (260)
T ss_pred             eeeeccCccceEEeeecC-CCceEE-EEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCCCHH
Confidence            358999999999999855 456666 454443  223578999999999999999999998654  7999999  66666


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      +.                      .|+.|||+      .|++||||||+||+++++   +.++|+|||++........  
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~------~~i~H~dl~p~ni~i~~~---~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05067          89 DFLKTPEGIKLTINKLIDMAAQIAEGMAFIER------KNYIHRDLRAANILVSET---LCCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc------CCeecccccHHhEEEcCC---CCEEEccCcceeecCCCCccc
Confidence            54                      45667776      999999999999999986   8899999999977653221  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....++..|+||               |+|+++|+|++ |++||.+.+..+....+..+...   ......+.++.+++
T Consensus       160 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li  236 (260)
T cd05067         160 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRM---PRPDNCPEELYELM  236 (260)
T ss_pred             ccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCC---CCCCCCCHHHHHHH
Confidence            1223456679998               99999999999 99999988877777776554321   12245789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy6046         202 AKILIKNPMERMTAKEALK  220 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||..+|++|||+++++.
T Consensus       237 ~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         237 RLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             HHHccCChhhCCCHHHHHH
Confidence            9999999999999999876

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0668|consensus

Probab=99.97  E-value=1e-30  Score=224.32  Aligned_cols=210  Identities=23%  Similarity=0.306  Sum_probs=170.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc-----ceEEeeC-C----c
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE-----PLLGLNP-R----P   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~-----~~~v~e~-~----g   78 (379)
                      -+|+|-|++||.|.+..+.+.++ +|+...-....+.+|+.||+.|. ||||++++++..+     +.+++|+ .    .
T Consensus        45 k~GRGKYSEVFeg~~~~~~eK~V-iKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk  123 (338)
T KOG0668|consen   45 KVGRGKYSEVFEGINITNNEKCV-IKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFK  123 (338)
T ss_pred             HHcCccHhhHhcccccCCCceEE-EeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHH
Confidence            58999999999999888887777 78888877788999999999999 9999999999776     6788888 2    2


Q ss_pred             hhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccC
Q psy6046          79 PVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGT  144 (379)
Q Consensus        79 ~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt  144 (379)
                      .||..              .|+.|+|+      +||+|||+||.|++++..  .-.++|+|+|+|..+..+...+..+.+
T Consensus       124 ~ly~tl~d~dIryY~~elLkALdyCHS------~GImHRDVKPhNvmIdh~--~rkLrlIDWGLAEFYHp~~eYnVRVAS  195 (338)
T KOG0668|consen  124 QLYPTLTDYDIRYYIYELLKALDYCHS------MGIMHRDVKPHNVMIDHE--LRKLRLIDWGLAEFYHPGKEYNVRVAS  195 (338)
T ss_pred             HHhhhhchhhHHHHHHHHHHHHhHHHh------cCcccccCCcceeeechh--hceeeeeecchHhhcCCCceeeeeeeh
Confidence            22222              67888887      999999999999999986  578999999999998888777888889


Q ss_pred             CCCcch----------------HHHHHHHHHhhCCCCCC-CCChHHHHHHHHh-------------CCCCCCcc------
Q psy6046         145 PDYVGK----------------SLGVTAYVLLTGFSPFG-GETDSETFRNISK-------------AQLDFPDE------  188 (379)
Q Consensus       145 ~~y~aP----------------SlGvil~~lltg~~Pf~-~~~~~~~~~~i~~-------------~~~~~~~~------  188 (379)
                      .+|-.|                |+||++..|+..+-||. |.+..+++-+|.+             -...+++.      
T Consensus       196 RyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~  275 (338)
T KOG0668|consen  196 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILG  275 (338)
T ss_pred             hhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhh
Confidence            999888                99999999999998874 5555555444421             11222210      


Q ss_pred             -----cc---------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         189 -----LF---------EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       189 -----~~---------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                           .|         .-.++++.||+.++|..|..+|+||.|++.||||....
T Consensus       276 ~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  276 RHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             ccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence                 11         12479999999999999999999999999999997543

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=2.5e-29  Score=254.08  Aligned_cols=211  Identities=15%  Similarity=0.137  Sum_probs=137.3

Q ss_pred             cCcCCCCceEEEEEEEcCC----CcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeee---------cCcceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTT----KREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSL---------DPEPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~t----g~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~---------~~~~~~v~e   75 (379)
                      ..||+|+||.||+|++..+    +..||+++.......+....|  .++...+.++..++..         ...+++++|
T Consensus       138 ~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV~e  215 (566)
T PLN03225        138 KKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRACPNSCADFVYGFLEPVSSKKEDEYWLVWR  215 (566)
T ss_pred             EEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhhchhhHHHHHHhhhcccccccCCceEEEEE
Confidence            4899999999999999998    888886554433222222222  1222222333222211         123788999


Q ss_pred             C--CchhhHH----------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEe
Q psy6046          76 P--RPPVYQA----------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMM  113 (379)
Q Consensus        76 ~--~g~l~~~----------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~  113 (379)
                      |  +|+|++.                                        .|+.|||+      +||+||||||+|||++
T Consensus       216 y~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~------~gIiHRDLKP~NILl~  289 (566)
T PLN03225        216 YEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS------TGIVHRDVKPQNIIFS  289 (566)
T ss_pred             ecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH------CCEEeCcCCHHHEEEe
Confidence            9  4554332                                        35666666      9999999999999998


Q ss_pred             ecCCCCcEEEeecccceeeccC--ccccccccCCCCcch-------------------------------------HHHH
Q psy6046         114 GDFPNCDIKVCDFEISRVILDG--IEIRELLGTPDYVGK-------------------------------------SLGV  154 (379)
Q Consensus       114 ~~~~~~~ikl~DFG~a~~~~~~--~~~~~~~gt~~y~aP-------------------------------------SlGv  154 (379)
                      .+  .+.+||+|||+|+.....  ......++++.|+||                                     |+||
T Consensus       290 ~~--~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGv  367 (566)
T PLN03225        290 EG--SGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGL  367 (566)
T ss_pred             CC--CCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHH
Confidence            64  378999999999865332  223456788888887                                     6899


Q ss_pred             HHHHHhhCCCCCCCCChHHHHHHHHhCCCCC-----------Cc------ccccCCCHHHHHHHHHhcccCCCCCCCHHH
Q psy6046         155 TAYVLLTGFSPFGGETDSETFRNISKAQLDF-----------PD------ELFEDISPEAKDFIAKILIKNPMERMTAKE  217 (379)
Q Consensus       155 il~~lltg~~Pf~~~~~~~~~~~i~~~~~~~-----------~~------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e  217 (379)
                      ++|+|+++..|+... .......+......+           ..      ...+..+..+.+||.+||..||.+|||+.+
T Consensus       368 iL~el~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e  446 (566)
T PLN03225        368 IFLQMAFPNLRSDSN-LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKA  446 (566)
T ss_pred             HHHHHHhCcCCCchH-HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHH
Confidence            999999977665322 111111222111110           00      011112345669999999999999999999


Q ss_pred             HhcCccccCCccc
Q psy6046         218 ALKHPWLMNKKQI  230 (379)
Q Consensus       218 ~l~hp~~~~~~~~  230 (379)
                      +|+||||.+....
T Consensus       447 ~L~Hpff~~~~~~  459 (566)
T PLN03225        447 ALAHPYFDREGLL  459 (566)
T ss_pred             HhCCcCcCCCCcc
Confidence            9999999876643

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=5.5e-30  Score=238.73  Aligned_cols=210  Identities=25%  Similarity=0.308  Sum_probs=161.4

Q ss_pred             ccCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v   73 (379)
                      .+.||+|+||.||+|++.   .+++.+|+ |....       .....+.+|+.+++.++ ||||+++++.+..   +|++
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~av-k~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   83 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAM-KVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLI   83 (288)
T ss_pred             EEEeccCCCceEEEEEEeccccCCcEEEE-EEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEE
Confidence            358999999999999864   45667774 44322       12345789999999994 9999999887654   7899


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +||  +|+++..                    .++.|||.      .|++||||+|+||+++.+   +.++|+|||++..
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~------~~~~H~dl~p~nil~~~~---~~~~l~dfg~~~~  154 (288)
T cd05583          84 LDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQ------LGIIYRDIKLENILLDSE---GHVVLTDFGLSKE  154 (288)
T ss_pred             EecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHeEECCC---CCEEEEECccccc
Confidence            999  6666654                    55677777      999999999999999875   7899999999876


Q ss_pred             eccCcc--ccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCC----hHHHHHHHHhCCCCCCcc
Q psy6046         132 ILDGIE--IRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGET----DSETFRNISKAQLDFPDE  188 (379)
Q Consensus       132 ~~~~~~--~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~  188 (379)
                      ......  .....|+..|+||                 |+|+++|+|++|..||....    ..+....+.......+  
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (288)
T cd05583         155 FLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFP--  232 (288)
T ss_pred             cccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCC--
Confidence            543321  2234678889888                 89999999999999996432    2333444444433333  


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCC---HHHHhcCccccCCcccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMT---AKEALKHPWLMNKKQIM  231 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt---~~e~l~hp~~~~~~~~~  231 (379)
                        ..+++.+.++|.+||..||++|||   +.++|+||||+...|..
T Consensus       233 --~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~~~~~  276 (288)
T cd05583         233 --KTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDWDD  276 (288)
T ss_pred             --cccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccCCHHH
Confidence              357899999999999999999998   56789999999887654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.97  E-value=1.8e-29  Score=234.57  Aligned_cols=201  Identities=19%  Similarity=0.181  Sum_probs=155.7

Q ss_pred             CccCcCCCCceEEEEEEEcC-----CCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           7 ASHVGGNRARSSCSRKPEKT-----TKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ....||+|+||.||+|....     ++..++ +|....   .....+.+|+++++.++||||+++++++.+   .|+++|
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   87 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVA-VKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFE   87 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEE-EEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEe
Confidence            34589999999999997532     344455 444332   224568999999999999999999988664   789999


Q ss_pred             C--CchhhHH-----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC
Q psy6046          76 P--RPPVYQA-----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN  118 (379)
Q Consensus        76 ~--~g~l~~~-----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~  118 (379)
                      |  +|+|.+.                                   .|+.|||+      .|++||||||+||+++++   
T Consensus        88 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~------~~i~H~dlkp~nil~~~~---  158 (280)
T cd05092          88 YMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS------LHFVHRDLATRNCLVGQG---  158 (280)
T ss_pred             cCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH------CCeecccccHhhEEEcCC---
Confidence            8  4444321                                   56777777      999999999999999875   


Q ss_pred             CcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHH
Q psy6046         119 CDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNIS  179 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~  179 (379)
                      +.+||+|||++........   .....+++.|+||               |+||++|+|++ |.+||...+..+....+.
T Consensus       159 ~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~  238 (280)
T cd05092         159 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECIT  238 (280)
T ss_pred             CCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHH
Confidence            8999999999976543221   1223456789999               99999999998 999998877777777776


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+....   ....+++.+.++|.+||..||.+||++.+++.
T Consensus       239 ~~~~~~---~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         239 QGRELE---RPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             cCccCC---CCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            653221   12357899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.97  E-value=7.9e-30  Score=243.52  Aligned_cols=201  Identities=18%  Similarity=0.186  Sum_probs=150.6

Q ss_pred             ccCcCCCCceEEEEEEEcC-----CCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc----ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEKT-----TKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~v   73 (379)
                      .++||+|+||.||+|.+..     +++.|| +|....    .....+.+|+.+++.+ +||||+++++++..    ++++
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va-~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v   90 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVA-VKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceee-eeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEE
Confidence            3589999999999997544     346677 444332    2234578899999999 79999999987542    6888


Q ss_pred             eeC--CchhhHH--------------------------------------------------------------------
Q psy6046          74 LNP--RPPVYQA--------------------------------------------------------------------   83 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------------------------------------------------------   83 (379)
                      +||  +|.|.+.                                                                    
T Consensus        91 ~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (337)
T cd05054          91 VEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPL  170 (337)
T ss_pred             EecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCC
Confidence            999  4444321                                                                    


Q ss_pred             -------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---ccccccCCCC
Q psy6046          84 -------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDY  147 (379)
Q Consensus        84 -------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y  147 (379)
                                   .|+.|||+      .||+||||||+||+++.+   +.++|+|||++..+.....   .....++..|
T Consensus       171 ~~~~~~~~~~qi~~aL~~lH~------~~ivHrDikp~Nill~~~---~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y  241 (337)
T cd05054         171 TLEDLISYSFQVARGMEFLAS------RKCIHRDLAARNILLSEN---NVVKICDFGLARDIYKDPDYVRKGDARLPLKW  241 (337)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh------CCeecCCCCcceEEEeCC---CcEEEeccccchhcccCcchhhccCCCCCccc
Confidence                         56677776      999999999999999975   7899999999987543221   2233456789


Q ss_pred             cch---------------HHHHHHHHHhh-CCCCCCCCChHHHH-HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCC
Q psy6046         148 VGK---------------SLGVTAYVLLT-GFSPFGGETDSETF-RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM  210 (379)
Q Consensus       148 ~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~-~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  210 (379)
                      +||               |+||++|+|++ |..||.+....+.+ ..+..+.....   ....++++.+++.+||+.+|+
T Consensus       242 ~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~~p~  318 (337)
T cd05054         242 MAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRA---PEYATPEIYSIMLDCWHNNPE  318 (337)
T ss_pred             cCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCC---CccCCHHHHHHHHHHccCChh
Confidence            999               99999999998 99999875544433 33333322111   135789999999999999999


Q ss_pred             CCCCHHHHhcC
Q psy6046         211 ERMTAKEALKH  221 (379)
Q Consensus       211 ~Rpt~~e~l~h  221 (379)
                      +||++.++++|
T Consensus       319 ~RPs~~ell~~  329 (337)
T cd05054         319 DRPTFSELVEI  329 (337)
T ss_pred             hCcCHHHHHHH
Confidence            99999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.97  E-value=3.2e-29  Score=228.88  Aligned_cols=206  Identities=19%  Similarity=0.200  Sum_probs=160.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCC----cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK----REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg----~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||.|+||.||+|++..++    ..+| +|.....    ....+..|+.+++.++||||+++++++.+   .|+++|+
T Consensus         4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~   82 (258)
T smart00219        4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVA-VKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEY   82 (258)
T ss_pred             cceeccCCCcceEEEEecCCCCCCCceEE-EEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEec
Confidence            457999999999999998876    5666 5554432    34578999999999999999999998775   8999999


Q ss_pred             --CchhhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          77 --RPPVYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        77 --~g~l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                        ++++.+.                .+.+.++.+.++|+.|++||||||+||+++++   +.++|+|||++.........
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~  159 (258)
T smart00219       83 MEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGEN---LVVKISDFGLSRDLYDDDYY  159 (258)
T ss_pred             cCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccC---CeEEEcccCCceeccccccc
Confidence              4555433                11222233333444999999999999999986   79999999999876544221


Q ss_pred             c--ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 R--ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 ~--~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      .  ...+++.|+||               |+|+++|+|++ |.+||.+.+.......+..+......   ..++.++.++
T Consensus       160 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  236 (258)
T smart00219      160 KKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKP---ENCPPEIYKL  236 (258)
T ss_pred             ccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCC---CcCCHHHHHH
Confidence            1  12367789999               99999999998 89999988888888887766543222   3479999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..||.+|||+.++++
T Consensus       237 i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      237 MLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             HHHHCcCChhhCcCHHHHHh
Confidence            99999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.97  E-value=1.9e-29  Score=235.49  Aligned_cols=201  Identities=17%  Similarity=0.163  Sum_probs=155.2

Q ss_pred             ccCcCCCCceEEEEEEEcCC----CcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTT----KREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t----g~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..+||+|+||.||+|.+...    +..++++|....    .....+.+|+.+++.++||||+++++.+..   .|+++||
T Consensus         5 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (290)
T cd05045           5 GKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEY   84 (290)
T ss_pred             cccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEe
Confidence            46899999999999987542    222344555433    223568899999999999999999987654   7899999


Q ss_pred             --CchhhHH--------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          77 --RPPVYQA--------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        77 --~g~l~~~--------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                        +|.|.+.                                            .|+.|||+      .|++||||||+||
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~------~~ivH~dikp~ni  158 (290)
T cd05045          85 AKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE------MKLVHRDLAARNV  158 (290)
T ss_pred             cCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH------CCeehhhhhhheE
Confidence              4555431                                            55677776      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~  171 (379)
                      +++++   +.+||+|||+++.......   .....++..|+||               |+|+++|+|++ |..||.+..+
T Consensus       159 ll~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  235 (290)
T cd05045         159 LVAEG---RKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP  235 (290)
T ss_pred             EEcCC---CcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99875   8999999999976532211   1223456689998               99999999998 9999998888


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+....+..+. ..+  ....++.++.+++.+||+.+|.+||++.++++
T Consensus       236 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         236 ERLFNLLKTGY-RME--RPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             HHHHHHHhCCC-CCC--CCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            87777665542 222  12468899999999999999999999999976

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.97  E-value=1.9e-29  Score=231.90  Aligned_cols=203  Identities=21%  Similarity=0.201  Sum_probs=159.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecc-----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERN-----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..+.||+|+||.||+|.+..+|+.+|++....     ......+.+|+++++.++||+|+++++.+.+   .++++||  
T Consensus         6 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (267)
T cd08224           6 IEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELAD   85 (267)
T ss_pred             eeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCC
Confidence            34589999999999999999999988533321     1234678999999999999999999988665   7899999  


Q ss_pred             CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          77 RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        77 ~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      +|+|...                        .|+.|||+      .||+||||+|+||+++.+   +.++|+|||++...
T Consensus        86 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~h~dl~p~nil~~~~---~~~~l~d~~~~~~~  156 (267)
T cd08224          86 AGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS------KRIMHRDIKPANVFITAT---GVVKLGDLGLGRFF  156 (267)
T ss_pred             CCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh------CCEecCCcChhhEEECCC---CcEEEeccceeeec
Confidence            5666533                        45667776      999999999999999875   88999999998765


Q ss_pred             ccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC--hHHHHHHHHhCCCCCCcccccCCC
Q psy6046         133 LDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET--DSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       133 ~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .... ......+++.|+||               |+|+++|+|++|+.||....  ..+....+..+...  +.....++
T Consensus       157 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  234 (267)
T cd08224         157 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYP--PLPADHYS  234 (267)
T ss_pred             cCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCC--CCChhhcC
Confidence            4332 23345688889999               99999999999999996543  33445555444322  11122578


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+.++|.+||..+|++|||+.++++
T Consensus       235 ~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         235 EELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            89999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=2.3e-29  Score=230.30  Aligned_cols=197  Identities=13%  Similarity=0.127  Sum_probs=155.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ...||+|+||.||+|..  .|+.+|+++...... ..++.+|+.+++.++||||+++++++.+   .|+++|+  +|++.
T Consensus        11 ~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~   88 (256)
T cd05039          11 GATIGKGEFGDVMLGDY--RGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLV   88 (256)
T ss_pred             eeeeecCCCceEEEEEe--cCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHH
Confidence            45899999999999985  477777544433322 4678999999999999999999998653   8999999  45655


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      +.                      .|+.|||.      +|++||||||+||+++.+   +.++|+|||.++......  .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~------~~i~H~di~p~Nili~~~---~~~~l~d~g~~~~~~~~~--~  157 (256)
T cd05039          89 DYLRSRGRAVITLAQQLGFALDVCEGMEYLEE------KNFVHRDLAARNVLVSED---LVAKVSDFGLAKEASQGQ--D  157 (256)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCccchhcccceEEEeCC---CCEEEccccccccccccc--c
Confidence            54                      55677776      999999999999999875   899999999998763221  1


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...++..|+||               |+|+++|+|++ |..||...+..+....+..+...   .....+++.+.++|.+
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~  234 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRM---EAPEGCPPEVYKVMKD  234 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCC---CCccCCCHHHHHHHHH
Confidence            22344567788               99999999997 99999988877777766654221   1223578999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy6046         204 ILIKNPMERMTAKEALK  220 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~  220 (379)
                      ||..+|++|||+.++++
T Consensus       235 ~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         235 CWELDPAKRPTFKQLRE  251 (256)
T ss_pred             HhccChhhCcCHHHHHH
Confidence            99999999999999986

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.97  E-value=2e-29  Score=235.50  Aligned_cols=201  Identities=18%  Similarity=0.162  Sum_probs=157.9

Q ss_pred             CccCcCCCCceEEEEEEEcC-----CCcEEEEEEeccccc---chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           7 ASHVGGNRARSSCSRKPEKT-----TKREVVQWKERNVSQ---GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~~---~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ....||+|+||.||+|.+..     ++..++ +|......   ...+.+|+.+++.++||||+++++++.+   .++++|
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   87 (291)
T cd05094           9 LKRELGEGAFGKVFLAECYNLSPTKDKMLVA-VKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFE   87 (291)
T ss_pred             EeeeecccCCCeEEEeEeeccCCCCcceeeE-EEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEe
Confidence            34589999999999998643     333445 55544322   3568899999999999999999998765   799999


Q ss_pred             C--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC
Q psy6046          76 P--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP  117 (379)
Q Consensus        76 ~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~  117 (379)
                      |  +|+|.+.                                    .|+.|||.      +||+||||||+||+++.+  
T Consensus        88 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~------~~i~H~dlkp~Nil~~~~--  159 (291)
T cd05094          88 YMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS------QHFVHRDLATRNCLVGAN--  159 (291)
T ss_pred             cCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecccCcceEEEccC--
Confidence            9  4544331                                    45666666      999999999999999986  


Q ss_pred             CCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHH
Q psy6046         118 NCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNI  178 (379)
Q Consensus       118 ~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i  178 (379)
                       +.++|+|||++........   .....+++.|+||               |+|+++|+|++ |+.||...+..+....+
T Consensus       160 -~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~  238 (291)
T cd05094         160 -LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECI  238 (291)
T ss_pred             -CcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence             8999999999976543221   2234567889999               99999999998 99999888887777777


Q ss_pred             HhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         179 SKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+.....   ...++..+.+++.+||..+|.+|||+.++++
T Consensus       239 ~~~~~~~~---~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         239 TQGRVLER---PRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             hCCCCCCC---CccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            66554322   2357899999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0194|consensus

Probab=99.97  E-value=1.6e-30  Score=251.06  Aligned_cols=206  Identities=17%  Similarity=0.169  Sum_probs=166.3

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCc--EE-EEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ce
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKR--EV-VQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PL   71 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~--~~-a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~   71 (379)
                      |......||+|+||.||+|+.+..+.  .. |++|....      .....+++|+++|+.++|||||++|++...   +|
T Consensus       158 ~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~  237 (474)
T KOG0194|consen  158 DIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLM  237 (474)
T ss_pred             CccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccE
Confidence            33445699999999999999877644  22 34554442      334569999999999999999999998654   89


Q ss_pred             EEeeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          72 LGLNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        72 ~v~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      ++||+  +|+|.++                     .++.|||+      ++++||||-..|+|++..   +.+||+|||+
T Consensus       238 ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~------k~~IHRDIAARNcL~~~~---~~vKISDFGL  308 (474)
T KOG0194|consen  238 LVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHS------KNCIHRDIAARNCLYSKK---GVVKISDFGL  308 (474)
T ss_pred             EEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHH------CCCcchhHhHHHheecCC---CeEEeCcccc
Confidence            99999  8888887                     67999999      999999999999999985   6789999999


Q ss_pred             ceeeccCccccccc-cCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         129 SRVILDGIEIRELL-GTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       129 a~~~~~~~~~~~~~-gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ++....-......+ -...|+||               |+||++||+.+ |..||.+....++..+|....++.+.+  .
T Consensus       309 s~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~--~  386 (474)
T KOG0194|consen  309 SRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIP--S  386 (474)
T ss_pred             ccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCC--C
Confidence            87653211111122 33579999               99999999998 899999999999999996655555433  2


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+..+..++.+|+..+|++|||+.++.+
T Consensus       387 ~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  387 KTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             CCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence            67889999999999999999999999876

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.97  E-value=3.5e-29  Score=228.32  Aligned_cols=198  Identities=17%  Similarity=0.146  Sum_probs=154.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ++||+|+||.||+|.+.. ++.+|+ |.....    ....+.+|+++++.++||||+++++++.+   .|+++|+  ++.
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~-K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAV-KTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEE-EeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            369999999999999877 888884 443321    34578999999999999999999988654   7899999  555


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +.+.                     .|+.|||.      +|++||||||+||+++.+   +.++|+|||++.........
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~------~~i~h~di~p~nili~~~---~~~~l~d~g~~~~~~~~~~~  149 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES------KNCIHRDLAARNCLVGEN---NVLKISDFGMSREEEGGIYT  149 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCEehhhcCcceEEEcCC---CcEEEeeccccccccCCcce
Confidence            5443                     45666666      999999999999999875   89999999999765422111


Q ss_pred             ---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         139 ---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       139 ---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                         ....++..|+||               |+|+++|+|++ |..||.+.........+.... ..+  ....++.++.+
T Consensus       150 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~  226 (251)
T cd05041         150 VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGY-RMP--APQLCPEEIYR  226 (251)
T ss_pred             eccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCC-CCC--CCccCCHHHHH
Confidence               112234568888               99999999999 899998887776666665442 111  12357899999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q psy6046         200 FIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.+||..+|.+|||+.++++
T Consensus       227 li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         227 LMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             HHHHHhccChhhCcCHHHHHH
Confidence            999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.97  E-value=3.1e-29  Score=244.35  Aligned_cols=202  Identities=14%  Similarity=0.129  Sum_probs=153.9

Q ss_pred             ccCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc----cchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS----QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~   74 (379)
                      .+.||+|+||.||+|++..     +++.|| +|.....    ..+.+.+|+.+|..+. ||||+++++++.+   .|+++
T Consensus        42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~va-vK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~  120 (401)
T cd05107          42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVA-VKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIIT  120 (401)
T ss_pred             hhhccCCCceeEEEEEEcCCCCCCCceEEE-EEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEE
Confidence            4589999999999998643     344566 5554432    1346889999999998 9999999998765   79999


Q ss_pred             eC--CchhhHH---------------------------------------------------------------------
Q psy6046          75 NP--RPPVYQA---------------------------------------------------------------------   83 (379)
Q Consensus        75 e~--~g~l~~~---------------------------------------------------------------------   83 (379)
                      ||  +|+|++.                                                                     
T Consensus       121 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (401)
T cd05107         121 EYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVK  200 (401)
T ss_pred             eccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhh
Confidence            99  6666543                                                                     


Q ss_pred             -------------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          84 -------------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        84 -------------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                                                                       .|+.|||+      .|++||||||+|||++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivHrdlkp~NiLl~~  274 (401)
T cd05107         201 YADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS------KNCVHRDLAARNVLICE  274 (401)
T ss_pred             hhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc------CCcCcccCCcceEEEeC
Confidence                                                             24455555      99999999999999987


Q ss_pred             cCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      .   +.+||+|||+++.......   .....+++.|+||               |+|+++|+|++ |..||......+..
T Consensus       275 ~---~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~  351 (401)
T cd05107         275 G---KLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQF  351 (401)
T ss_pred             C---CEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHH
Confidence            5   7899999999986543221   2234567889999               99999999998 89999876655544


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..........+  .+..++.++.+|+.+||..+|.+||++.+++..
T Consensus       352 ~~~~~~~~~~~--~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         352 YNAIKRGYRMA--KPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             HHHHHcCCCCC--CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            44333322222  223578999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=3.6e-29  Score=229.77  Aligned_cols=197  Identities=17%  Similarity=0.174  Sum_probs=154.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.+.. ++.|| +|.....  ....+.+|+.+++.++||||+++++++..   .|+++|+  +|.|.
T Consensus        12 ~~lg~g~~~~v~~~~~~~-~~~v~-iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   89 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNN-TTPVA-VKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLL   89 (261)
T ss_pred             EEecccCCccEEEEEecC-CeEEE-EEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHH
Confidence            589999999999999654 45566 4554432  23568899999999999999999987654   7899999  55555


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      +.                      .|+.+||.      .||+||||||+||+++++   +.++|+|||+++...... ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~~l~dfg~~~~~~~~~-~~  159 (261)
T cd05068          90 EYLQGGAGRALKLPQLIDMAAQVASGMAYLEA------QNYIHRDLAARNVLVGEN---NICKVADFGLARVIKEDI-YE  159 (261)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeccCCcceEEEcCC---CCEEECCcceEEEccCCc-cc
Confidence            44                      45666666      999999999999999985   889999999998765322 11


Q ss_pred             ccc---cCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         140 ELL---GTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       140 ~~~---gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...   .+..|+||               |+|+++|+|++ |+.||.+.+.......+.... ..+  ....++..+.++
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l  236 (261)
T cd05068         160 AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGY-RMP--CPPGCPKELYDI  236 (261)
T ss_pred             ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC--CCCcCCHHHHHH
Confidence            122   23468898               99999999999 999999888877777776542 222  123578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|.+||++.++..
T Consensus       237 i~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         237 MLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             HHHHhhcCcccCCCHHHHHH
Confidence            99999999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.97  E-value=3.5e-29  Score=231.07  Aligned_cols=202  Identities=15%  Similarity=0.150  Sum_probs=156.7

Q ss_pred             CccCcCCCCceEEEEEEEcCC-Cc-EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTT-KR-EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~t-g~-~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      ....||+|+||.||+|.+..+ +. ..+++|....    ...+.+.+|+.+++.++||||+++++++.+  .|+++|+  
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~   89 (270)
T cd05056          10 LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAP   89 (270)
T ss_pred             eeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCC
Confidence            345899999999999987654 22 2333554443    224568999999999999999999998655  7899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      .|++||||||+||+++..   +.++|+|||+++.....
T Consensus        90 ~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~~~H~dl~p~nili~~~---~~~~l~d~g~~~~~~~~  160 (270)
T cd05056          90 LGELRSYLQVNKYSLDLASLILYSYQLSTALAYLES------KRFVHRDIAARNVLVSSP---DCVKLGDFGLSRYLEDE  160 (270)
T ss_pred             CCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccccChheEEEecC---CCeEEccCceeeecccc
Confidence            5666554                     45666666      999999999999999985   89999999999866443


Q ss_pred             cccc--ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         136 IEIR--ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       136 ~~~~--~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ....  ...+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+....   .+..+++.+
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  237 (270)
T cd05056         161 SYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLP---MPPNCPPTL  237 (270)
T ss_pred             cceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCC---CCCCCCHHH
Confidence            2211  22234578998               99999999986 999999888777777776654221   224689999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+++.+||..+|.+|||+.+++.
T Consensus       238 ~~li~~~l~~~P~~Rpt~~~~~~  260 (270)
T cd05056         238 YSLMTKCWAYDPSKRPRFTELKA  260 (270)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999886

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=2.2e-29  Score=260.12  Aligned_cols=115  Identities=18%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      -....||+|+||.||+|.+..+++.||+ |+....      ....+..|+.+++.++||||+++++.+..   +|++|||
T Consensus         7 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAi-Kvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy   85 (669)
T cd05610           7 VIVKPISRGAFGKVYLGRKKNNSKLYAV-KVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEY   85 (669)
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEE-EEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeC
Confidence            3446899999999999999999998884 444321      13568899999999999999999987654   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                        +|.|...                    .|+.|||.      +||+||||||+|||++.+   +.+||+|||+++
T Consensus        86 ~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~------~gIiHrDLKP~NILl~~~---g~vkL~DFGls~  152 (669)
T cd05610          86 LIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHR------HGIIHRDLKPDNMLISNE---GHIKLTDFGLSK  152 (669)
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCEEeCCccHHHEEEcCC---CCEEEEeCCCCc
Confidence              6666544                    56777777      999999999999999875   899999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.97  E-value=4.3e-29  Score=228.48  Aligned_cols=200  Identities=17%  Similarity=0.202  Sum_probs=158.1

Q ss_pred             cCcCCCCceEEEEEEEcC-CCc--EEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKT-TKR--EVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-tg~--~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      ++||+|+||.||+|.+.. .++  .+| +|......    ...+.+|+.+++.++||||+++++.+.+  +++++|+  +
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVA-VKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEE-EeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCC
Confidence            468999999999999866 333  344 56655432    3568899999999999999999987654  7899998  5


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|.+.                      .|++|||.      .|++||||||+||+++.+   +.+||+|||++......
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~------~~i~H~di~p~nil~~~~---~~~kl~dfg~~~~~~~~  150 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES------KRFIHRDLAARNILLASD---DKVKIGDFGLMRALPQN  150 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHh------CCccccccCcccEEEecC---CEEEecccccccccccc
Confidence            555543                      56777777      999999999999999986   89999999999876442


Q ss_pred             cc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..    .....++..|+||               |+||++|+|++ |..||...+..+....+.......+  .....+.
T Consensus       151 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  228 (257)
T cd05040         151 EDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLE--RPEACPQ  228 (257)
T ss_pred             ccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCC--CCccCCH
Confidence            21    1124467789999               99999999998 9999988888777777664332222  2235789


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.+++.+||..+|++|||+.++++
T Consensus       229 ~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         229 DIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             HHHHHHHHHCCCCcccCCCHHHHHH
Confidence            9999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG2345|consensus

Probab=99.97  E-value=6.3e-31  Score=227.93  Aligned_cols=202  Identities=18%  Similarity=0.130  Sum_probs=163.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeec--------CcceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLD--------PEPLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~--------~~~~~v~e~--   76 (379)
                      ..||+|||+-||++++..|++.||++|+.-.  ++.+..++|++..++++|||++++++..        .+.|+++.|  
T Consensus        27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~  106 (302)
T KOG2345|consen   27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYK  106 (302)
T ss_pred             eeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhc
Confidence            4799999999999999999999998766544  4567899999999999999999987752        237889888  


Q ss_pred             CchhhHH------------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          77 RPPVYQA------------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        77 ~g~l~~~------------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      .|++.+.                        .|+.+||.      ..  ++||||||.|||+.++   +.++|.|||.++
T Consensus       107 ~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~------~~~~yAH~DiKP~NILls~~---~~~vl~D~GS~~  177 (302)
T KOG2345|consen  107 RGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHE------KEPPYAHRDIKPANILLSDS---GLPVLMDLGSAT  177 (302)
T ss_pred             cccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhc------cCCcccccCCCcceeEecCC---CceEEEeccCcc
Confidence            7777776                        56777777      88  9999999999999986   899999999997


Q ss_pred             eec----cCc------cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCC--ChHHHHHHHHh
Q psy6046         131 VIL----DGI------EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGE--TDSETFRNISK  180 (379)
Q Consensus       131 ~~~----~~~------~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~--~~~~~~~~i~~  180 (379)
                      ...    ...      .......|..|+||                  ||||++|+|+.|..||...  ....+.-.+.+
T Consensus       178 ~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n  257 (302)
T KOG2345|consen  178 QAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQN  257 (302)
T ss_pred             ccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeec
Confidence            643    111      12234578899999                  9999999999999999421  11112234556


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+.+|...  .+|+.+.+||+.||++||.+||++.+++.+
T Consensus       258 ~q~s~P~~~--~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  258 AQISIPNSS--RYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             cccccCCCC--CccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence            677777653  589999999999999999999999999864

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.97  E-value=4.5e-29  Score=230.20  Aligned_cols=201  Identities=19%  Similarity=0.146  Sum_probs=148.3

Q ss_pred             CcCCCCceEEEEEEEcCC-CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTT-KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~t-g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .||+|+||.||+|..... ....+++|.....    ....+.+|+.+++.++||||+++++.+.+   +|+++||  +|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            489999999999975332 2223335544322    12457899999999999999999997654   8999999  566


Q ss_pred             hhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          80 VYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        80 l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      |.+.                         .|++|||+      +||+||||||+||+++.+   +.+||+|||++.....
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nill~~~---~~~kl~dfg~~~~~~~  152 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ------ADFIHSDLALRNCQLTAD---LSVKIGDYGLALEQYP  152 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh------cCEecccccHhheEecCC---CcEEEecccccccccc
Confidence            6543                         34556665      999999999999999986   8999999999865432


Q ss_pred             Ccc---ccccccCCCCcch----------------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh-CCCCCCc
Q psy6046         135 GIE---IRELLGTPDYVGK----------------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK-AQLDFPD  187 (379)
Q Consensus       135 ~~~---~~~~~gt~~y~aP----------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~-~~~~~~~  187 (379)
                      ...   .....+++.|+||                      |+||++|+|++ |.+||......+.+..+.. .....+.
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  232 (269)
T cd05042         153 EDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPK  232 (269)
T ss_pred             chheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCC
Confidence            211   1223345668887                      89999999999 8899988776666555433 3333332


Q ss_pred             c-cccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         188 E-LFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       188 ~-~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      + ....+++...+++..|+ .||++|||++++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         233 PQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             CcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence            2 23467899999999998 59999999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.97  E-value=3.3e-29  Score=235.50  Aligned_cols=201  Identities=16%  Similarity=0.141  Sum_probs=155.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEE---EEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREV---VQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|..+   +++|......    ...+.+|+.+++.++||||+++++++..  .++++||  +
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~   92 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPH   92 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCC
Confidence            37999999999999998888753   3356554322    2357899999999999999999998654  6678888  5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |.+.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus        93 g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~ivH~dikp~Nill~~~---~~~kL~Dfg~~~~~~~~~  163 (303)
T cd05110          93 GCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE------RRLVHRDLAARNVLVKSP---NHVKITDFGLARLLEGDE  163 (303)
T ss_pred             CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhh------cCeeccccccceeeecCC---CceEEccccccccccCcc
Confidence            655544                     45566666      999999999999999875   789999999998764332


Q ss_pred             c---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 E---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .   .....++..|+||               |+|+++|+|++ |..||.+....+....+..+. .++.  ...++..+
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~  240 (303)
T cd05110         164 KEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGE-RLPQ--PPICTIDV  240 (303)
T ss_pred             cccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCC-CCCC--CCCCCHHH
Confidence            2   1223456789999               99999999997 999998877666555554433 2222  23578999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+++.+||..+|++||++.+++..
T Consensus       241 ~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         241 YMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999999998873

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.97  E-value=4.7e-29  Score=229.80  Aligned_cols=200  Identities=16%  Similarity=0.186  Sum_probs=156.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE--EEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE--VVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~--~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|.+..++..  ++++|.....    ..+.+..|+.+++.++||||+++++++.+   .|+++||  +
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   90 (268)
T cd05063          11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMEN   90 (268)
T ss_pred             eEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCC
Confidence            4899999999999998877652  3335554432    23568899999999999999999998765   7899999  4


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |.|...                     .|+.|||+      .|++||||||+||+++.+   +.+||+|||++.......
T Consensus        91 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~------~~i~H~dlkp~Nili~~~---~~~kl~dfg~~~~~~~~~  161 (268)
T cd05063          91 GALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSD------MNYVHRDLAARNILVNSN---LECKVSDFGLSRVLEDDP  161 (268)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccccchhhEEEcCC---CcEEECCCccceeccccc
Confidence            555433                     56677777      999999999999999875   889999999997664322


Q ss_pred             ccc----ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         137 EIR----ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       137 ~~~----~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ...    ....++.|+||               |+||++|+|++ |..||...+..+....+..+. ..|.  ...++..
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~-~~~~--~~~~~~~  238 (268)
T cd05063         162 EGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGF-RLPA--PMDCPSA  238 (268)
T ss_pred             ccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCC-CCCC--CCCCCHH
Confidence            111    11234568999               99999999997 999999888888887776543 2222  2357899


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+++.+||..+|++||++.++++
T Consensus       239 ~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         239 VYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHH
Confidence            999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.97  E-value=2.6e-29  Score=244.89  Aligned_cols=200  Identities=14%  Similarity=0.162  Sum_probs=152.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCC-----cEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK-----REVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg-----~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~   74 (379)
                      .++||+|+||.||+|.+...+     ..|| +|....    ...+.+.+|+.+|+.+. ||||+++++++.+   .|++|
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~va-vK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~  120 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVA-VKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIIT  120 (400)
T ss_pred             hheecCCCCceEEEEEEcccCCCCCceEEE-EEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEE
Confidence            458999999999999875433     3455 555443    22356899999999996 9999999999765   89999


Q ss_pred             eC--CchhhHH---------------------------------------------------------------------
Q psy6046          75 NP--RPPVYQA---------------------------------------------------------------------   83 (379)
Q Consensus        75 e~--~g~l~~~---------------------------------------------------------------------   83 (379)
                      ||  +|+|.+.                                                                     
T Consensus       121 Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (400)
T cd05105         121 EYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKY  200 (400)
T ss_pred             EecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhh
Confidence            99  6666432                                                                     


Q ss_pred             -----------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC
Q psy6046          84 -----------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF  116 (379)
Q Consensus        84 -----------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~  116 (379)
                                                                     .|+.|||.      .||+||||||+||+++.+ 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivH~dikp~Nill~~~-  273 (400)
T cd05105         201 SDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS------KNCVHRDLAARNVLLAQG-  273 (400)
T ss_pred             hhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCChHhEEEeCC-
Confidence                                                           34566666      999999999999999985 


Q ss_pred             CCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHH-HH
Q psy6046         117 PNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSET-FR  176 (379)
Q Consensus       117 ~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~-~~  176 (379)
                        +.+||+|||+++.......   .....+++.|+||               |+||++|+|++ |..||.+...... ..
T Consensus       274 --~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~  351 (400)
T cd05105         274 --KIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYN  351 (400)
T ss_pred             --CEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHH
Confidence              7899999999987543321   2234567789999               99999999997 9999987654433 33


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+..+ ...+  ....++.++.+++.+||..||++|||+.++.+
T Consensus       352 ~~~~~-~~~~--~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         352 KIKSG-YRMA--KPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             HHhcC-CCCC--CCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence            34333 2222  22367899999999999999999999998876

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.97  E-value=2.7e-29  Score=236.16  Aligned_cols=201  Identities=16%  Similarity=0.191  Sum_probs=153.0

Q ss_pred             ccCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEK-----TTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~   74 (379)
                      ...||+|+||.||+|.+.     .++..+| +|....    ...+.+.+|+.+++.+ +||||+++++.+..   .|+++
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  118 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVA-VKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVIT  118 (302)
T ss_pred             cceeeccCCeeEEEEEEecCCCCCceeEEE-EEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEE
Confidence            348999999999999863     2333455 554432    2235688999999999 79999999988654   89999


Q ss_pred             eC--CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          75 NP--RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        75 e~--~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ||  +|+|...                      .|+.|||+      +||+|+||||+||+++..   +.++|+|||+++
T Consensus       119 e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~~l~dfg~~~  189 (302)
T cd05055         119 EYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS------KNCIHRDLAARNVLLTHG---KIVKICDFGLAR  189 (302)
T ss_pred             EcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeehhhhccceEEEcCC---CeEEECCCcccc
Confidence            99  5666544                      45677777      999999999999999875   789999999998


Q ss_pred             eeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         131 VILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       131 ~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      .......   .....+++.|+||               |+||++|+|++ |..||.+....+............+  ...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~  267 (302)
T cd05055         190 DIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMA--QPE  267 (302)
T ss_pred             cccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCC--CCC
Confidence            6543321   1223456789999               99999999998 9999987766554444433332222  123


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..++.+.+++.+||..+|++|||+.+++.
T Consensus       268 ~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         268 HAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             CCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            57899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.97  E-value=4.2e-29  Score=233.48  Aligned_cols=206  Identities=15%  Similarity=0.086  Sum_probs=156.2

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEE---------------EEEEecccc----cchHHHHHHHHHHhCCCCCcceeeee
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREV---------------VQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSL   66 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~---------------a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~   66 (379)
                      -..+.||+|+||.||+|.+..++..+               +++|.....    ..+.+.+|+++++.++||||++++++
T Consensus         8 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~   87 (296)
T cd05051           8 NFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGV   87 (296)
T ss_pred             cccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence            34568999999999999887655322               335554432    24568899999999999999999988


Q ss_pred             cCc---ceEEeeC--CchhhHH-------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          67 DPE---PLLGLNP--RPPVYQA-------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        67 ~~~---~~~v~e~--~g~l~~~-------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                      +..   .++++|+  +++|...                               .|+.|||+      +||+||||||+||
T Consensus        88 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~------~~i~H~dlkp~Ni  161 (296)
T cd05051          88 CTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES------LNFVHRDLATRNC  161 (296)
T ss_pred             EecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH------cCccccccchhce
Confidence            664   8899998  4433321                               56777777      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh--CCCCCCCCC
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT--GFSPFGGET  170 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt--g~~Pf~~~~  170 (379)
                      +++.+   +.++|+|||+++......   ......+++.|+||               |+||++|+|++  |..||...+
T Consensus       162 li~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05051         162 LVGKN---YTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT  238 (296)
T ss_pred             eecCC---CceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC
Confidence            99986   899999999997654332   12234467789999               99999999998  788998777


Q ss_pred             hHHHHHHHHhC----CCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         171 DSETFRNISKA----QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       171 ~~~~~~~i~~~----~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+.+..+...    ...........++.++.+++.+||..||.+|||+.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         239 DQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             hHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence            77666665433    111111122356899999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0665|consensus

Probab=99.97  E-value=2.7e-30  Score=231.42  Aligned_cols=206  Identities=23%  Similarity=0.328  Sum_probs=166.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e~   76 (379)
                      .+|.|.- .|..|-|.-+++.||++|....    ....+..+|..++..++|+||++++.++.         +.|++||+
T Consensus        24 p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~  102 (369)
T KOG0665|consen   24 PIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMEL  102 (369)
T ss_pred             ccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHh
Confidence            6888888 8999999999999997665543    34567899999999999999999999865         47999999


Q ss_pred             -CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          77 -RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        77 -~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                       .+.+.+.                  .|+++||+      .||+||||||+||++..+   +.+||+|||+|+.....-.
T Consensus       103 m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs------~~IihRdLkPsnivv~~~---~~lKi~dfg~ar~e~~~~~  173 (369)
T KOG0665|consen  103 MDANLCQVILMELDHETISYILYQMLCGIKHLHS------AGIIHRDLKPSNIVVNSD---CTLKILDFGLARTEDTDFM  173 (369)
T ss_pred             hhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh------cceeecccCcccceecch---hheeeccchhhcccCcccc
Confidence             3333322                  67778887      999999999999999997   9999999999987655546


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--------------------
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--------------------  182 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--------------------  182 (379)
                      .+.++.|++|.||               |+|||+.||++|+..|.|.+..+++.++....                    
T Consensus       174 mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~  253 (369)
T KOG0665|consen  174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVE  253 (369)
T ss_pred             cCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhh
Confidence            7778999999999               99999999999999999987766665552211                    


Q ss_pred             -------C----CCCccccc-------CCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         183 -------L----DFPDELFE-------DISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       183 -------~----~~~~~~~~-------~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                             .    .+|+..|.       .-+..+++++.+||..||++|.|++++|+|||++
T Consensus       254 ~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  254 NRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             cChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence                   0    12222221       1245689999999999999999999999999997

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.97  E-value=9.2e-30  Score=233.99  Aligned_cols=200  Identities=21%  Similarity=0.224  Sum_probs=155.2

Q ss_pred             ccCcCCCCceEEEEEEEc----CCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEK----TTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||.|+||.||+|...    ..+..|+ +|....    ...+.+.+|+++++.++||||+++++++.+   .++++||
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~-vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVA-VKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEE-EEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEE-EEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            457999999999999988    2233344 566543    224679999999999999999999998763   7999999


Q ss_pred             --CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          77 --RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        77 --~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                        .|+|.+.                      .|+.|||+      ++++|++|+|+||+++++   +.+||+|||++...
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~------~~iiH~~l~~~nill~~~---~~~Kl~~f~~~~~~  153 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHS------NNIIHGNLSPSNILLDSN---GQVKLSDFGLSRPI  153 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH------TTEEEST-SGGGEEEETT---TEEEEESTTTGEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccc---cccccccccccccc
Confidence              6777665                      67888888      999999999999999985   89999999999876


Q ss_pred             ccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         133 LDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       133 ~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      .....   .....+...|+||               |+|+++||+++ |+.||...+..+....+..+.....   ...+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~  230 (259)
T PF07714_consen  154 SEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPI---PDNC  230 (259)
T ss_dssp             TTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTS---BTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee---ccch
Confidence            32221   2234466789999               99999999999 7899999888888888866544222   2368


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +..+.++|..||..||.+|||+.++++
T Consensus       231 ~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  231 PKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             BHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             hHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            999999999999999999999999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=6.5e-29  Score=230.46  Aligned_cols=200  Identities=15%  Similarity=0.095  Sum_probs=157.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE---EEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE---VVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~---~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      +.||+|+||.||+|.++.+|..   .+++|.....    ....+.+|+.+++.++||||+++++++..  .++++||  +
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   92 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPL   92 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCC
Confidence            4799999999999998887753   2335554432    23568899999999999999999987654  8899999  6


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |.+.+.                     .|+.|||+      +||+||||||+||+++++   +.+||+|||+++......
T Consensus        93 g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~i~H~di~p~nil~~~~---~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          93 GCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEE------KRLVHRDLAARNVLVKTP---QHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCEEecccCcceEEEcCC---CeEEECCCcccccccCcc
Confidence            666654                     56677777      999999999999999875   789999999998764332


Q ss_pred             ccc---ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIR---ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~---~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ...   ...++..|+||               |+|+++|++++ |..||.+....+....+..+.....+   ...+..+
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  240 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQP---PICTIDV  240 (279)
T ss_pred             cceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCC---CCCCHHH
Confidence            211   12235579998               99999999998 99999998888877777665322111   2478999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+++.+||..+|..|||+.++++
T Consensus       241 ~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         241 YMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             HHHHHHHcCCChhhCCCHHHHHH
Confidence            99999999999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.97  E-value=4.4e-29  Score=230.08  Aligned_cols=200  Identities=16%  Similarity=0.179  Sum_probs=155.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc---EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR---EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...||+|+||.||+|.+..++.   .+| +|....    .....+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~-ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLPGKREIPVA-IKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYM   87 (267)
T ss_pred             eeeecccCCCceEEEEEecCCCCceEEE-EEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcC
Confidence            4589999999999999876654   344 555433    223568899999999999999999998654   8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      .|++||||||+||+++.+   +.++|+|||++.....
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~h~dlkp~nili~~~---~~~~l~dfg~~~~~~~  158 (267)
T cd05066          88 ENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSD------MGYVHRDLAARNILVNSN---LVCKVSDFGLSRVLED  158 (267)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeehhhchhcEEECCC---CeEEeCCCCccccccc
Confidence             5555444                     45666666      999999999999999875   8999999999987643


Q ss_pred             Ccc-c---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         135 GIE-I---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       135 ~~~-~---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ... .   ....++..|+||               |+|+++|++++ |..||.+.+..+....+..+. ..+.  ...++
T Consensus       159 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~-~~~~--~~~~~  235 (267)
T cd05066         159 DPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGY-RLPA--PMDCP  235 (267)
T ss_pred             ccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCC-cCCC--CCCCC
Confidence            221 1   111234578888               99999999886 999998887777777776552 2222  23578


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+.+++.+||..+|.+|||+.++++
T Consensus       236 ~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         236 AALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             HHHHHHHHHHcccCchhCCCHHHHHH
Confidence            99999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.97  E-value=3e-29  Score=231.11  Aligned_cols=201  Identities=16%  Similarity=0.149  Sum_probs=153.9

Q ss_pred             CcCCCCceEEEEEEEcCCC------cEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTK------REVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg------~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +||+|+||.||+|++...+      ..++ +|....    .....+.+|+.+++.++||||+++++++..   .|+++||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVA-VKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeeh-hhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            6999999999999976433      3444 554432    234568899999999999999999988654   7999998


Q ss_pred             --CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC--CCCcEEEee
Q psy6046          77 --RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF--PNCDIKVCD  125 (379)
Q Consensus        77 --~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~--~~~~ikl~D  125 (379)
                        +|+|.+.                           .|+.|||+      .+++|+||||+||+++..+  ....++|+|
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~H~dl~p~nil~~~~~~~~~~~~~l~d  154 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ------MHFIHRDLAARNCLVSEKGYDADRVVKIGD  154 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh------CCcccCCCChheEEEecCCCCCCcceEECC
Confidence              5566543                           34566666      9999999999999999752  123799999


Q ss_pred             cccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCC
Q psy6046         126 FEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFP  186 (379)
Q Consensus       126 FG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~  186 (379)
                      ||+++.......   .....++..|+||               |+||++|+|++ |..||...+..+....+..+...  
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--  232 (269)
T cd05044         155 FGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRL--  232 (269)
T ss_pred             cccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCcc--
Confidence            999976533221   1223456789999               99999999998 99999888777777766554321  


Q ss_pred             cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       187 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                       .....+|+.+.++|.+||..+|.+||++.++++
T Consensus       233 -~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         233 -QKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             -CCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence             122357899999999999999999999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.97  E-value=7.6e-29  Score=228.76  Aligned_cols=201  Identities=19%  Similarity=0.167  Sum_probs=148.2

Q ss_pred             CcCCCCceEEEEEEEcC--CCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKT--TKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .||+|+||.||+|....  ++..+|+++.....   ....+.+|+.+++.++||||+++++.+.+   .|+++||  +|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999998543  34456644333221   22468889999999999999999998665   7899999  566


Q ss_pred             hhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          80 VYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        80 l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      |.+.                         .|+.|||+      .|++||||||+||+++.+   +.+||+|||+++....
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~i~H~dlkp~nil~~~~---~~~kL~dfg~~~~~~~  152 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK------NNFIHSDLALRNCLLTAD---LTVKIGDYGLSHNKYK  152 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH------CCEeccccCcceEEEcCC---CcEEECCccccccccC
Confidence            6543                         45666666      999999999999999885   8899999999875432


Q ss_pred             Ccc---ccccccCCCCcch----------------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHH-hCCCCCCc
Q psy6046         135 GIE---IRELLGTPDYVGK----------------------SLGVTAYVLLT-GFSPFGGETDSETFRNIS-KAQLDFPD  187 (379)
Q Consensus       135 ~~~---~~~~~gt~~y~aP----------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~-~~~~~~~~  187 (379)
                      ...   .....+++.|+||                      |+|+++|+|++ |..||...+..+...... ......+.
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  232 (269)
T cd05087         153 EDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPK  232 (269)
T ss_pred             cceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCC
Confidence            221   1224466678777                      89999999996 999998766655443332 22233332


Q ss_pred             c-cccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         188 E-LFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       188 ~-~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      + .....++.+.+++.+|+ .+|++|||+++++.
T Consensus       233 ~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         233 PRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             CccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence            2 22346888999999998 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.97  E-value=3.4e-29  Score=233.91  Aligned_cols=201  Identities=17%  Similarity=0.141  Sum_probs=155.8

Q ss_pred             cCcCCCCceEEEEEEEcCCC----cEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTK----REVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg----~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..++    ..++++|.....    ....+.+|+.+++.+ +||||+++++++.+   +|+++||
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~   97 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEY   97 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEe
Confidence            37999999999999876543    233335654432    234588999999999 79999999998654   8999998


Q ss_pred             --CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC
Q psy6046          77 --RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN  118 (379)
Q Consensus        77 --~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~  118 (379)
                        +|+|...                                    .|+.|||+      .||+||||||+||+++.+   
T Consensus        98 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~------~~ivH~dlkp~Nil~~~~---  168 (293)
T cd05053          98 AAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS------KKCIHRDLAARNVLVTED---  168 (293)
T ss_pred             CCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH------CCccccccceeeEEEcCC---
Confidence              5554432                                    45677777      999999999999999875   


Q ss_pred             CcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHH
Q psy6046         119 CDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNIS  179 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~  179 (379)
                      +.+||+|||+++.......   .....++..|+||               |+||++|+|++ |..||.+.+..+....+.
T Consensus       169 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~  248 (293)
T cd05053         169 HVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLK  248 (293)
T ss_pred             CeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence            8999999999987543321   1122345679999               99999999997 999999888877777776


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+....   ....++..+.+|+.+||..||.+|||+.+++++
T Consensus       249 ~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         249 EGYRME---KPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             cCCcCC---CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            654221   123578999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=1.3e-29  Score=232.52  Aligned_cols=198  Identities=14%  Similarity=0.123  Sum_probs=149.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE-------EEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecC---cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE-------VVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDP---EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~-------~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~---~~~~v~e   75 (379)
                      +.||+|+||.||+|.+..++..       ++ +|.....   ..+.+..|+.+++.++||||+++++++.   ..+++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVL-LKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhh-HHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            4799999999999998766543       44 4444332   2356888999999999999999998864   3899999


Q ss_pred             C--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-----CCcEEEeecc
Q psy6046          76 P--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-----NCDIKVCDFE  127 (379)
Q Consensus        76 ~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-----~~~ikl~DFG  127 (379)
                      |  +|+|...                     .|+.|||+      .||+||||||+||+++.++.     ...++++|||
T Consensus        80 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g  153 (258)
T cd05078          80 YVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLED------KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPG  153 (258)
T ss_pred             cCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCccceEEEecccccccCCCceEEecccc
Confidence            9  5666554                     45666666      99999999999999987521     1347999999


Q ss_pred             cceeeccCccccccccCCCCcch----------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         128 ISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       128 ~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ++.....   .....+++.|+||                |+|+++|+|++| .+||...+...... +......+|.   
T Consensus       154 ~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~---  226 (258)
T cd05078         154 ISITVLP---KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQ-FYEDRHQLPA---  226 (258)
T ss_pred             cccccCC---chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHH-HHHccccCCC---
Confidence            9865432   2235678889998                999999999998 57776655544333 2333334443   


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                       ..+.++.+||.+||+.||++|||++++++.
T Consensus       227 -~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         227 -PKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             -CCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence             356889999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0671|consensus

Probab=99.96  E-value=1.4e-30  Score=238.26  Aligned_cols=216  Identities=19%  Similarity=0.229  Sum_probs=163.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCC--CC----ccee---eeecCcceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKV--EP----IEKY---YSLDPEPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~h--pn----Iv~~---~~~~~~~~~v~e~-   76 (379)
                      ..+|+|+||.|..+.+..++..|| +|++..  +-+++.+-|+++|+++.+  |+    +|.+   +++-...|+++|+ 
T Consensus        95 ~~lGeGtFGkV~ec~D~~~~~~vA-lKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell  173 (415)
T KOG0671|consen   95 DLLGEGTFGKVVECWDRETKEHVA-LKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL  173 (415)
T ss_pred             hhhcCCcccceEEEeecCCCceeh-HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc
Confidence            489999999999999999965555 677654  335778999999999963  33    5666   4444459999999 


Q ss_pred             CchhhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-----------------CCCcEEE
Q psy6046          77 RPPVYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-----------------PNCDIKV  123 (379)
Q Consensus        77 ~g~l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-----------------~~~~ikl  123 (379)
                      +-++|+.                .|-|.++++.++|+.+++|.||||+|||+.++.                 .+..++|
T Consensus       174 G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~v  253 (415)
T KOG0671|consen  174 GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKV  253 (415)
T ss_pred             ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEE
Confidence            5577777                567778888888889999999999999987641                 1356899


Q ss_pred             eecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHH---HHHHHh-----
Q psy6046         124 CDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSET---FRNISK-----  180 (379)
Q Consensus       124 ~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~---~~~i~~-----  180 (379)
                      +|||.|+....  ...+.+.|..|.||               |+|||++|+.||...|++.+..+-   +++|..     
T Consensus       254 IDFGsAtf~~e--~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~  331 (415)
T KOG0671|consen  254 IDFGSATFDHE--HHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSR  331 (415)
T ss_pred             EecCCcceecc--CcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHH
Confidence            99999987433  34677899999999               999999999999999998775553   333311     


Q ss_pred             -------------CCCCCCcccc---------------------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         181 -------------AQLDFPDELF---------------------EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       181 -------------~~~~~~~~~~---------------------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                                   +.+..|+..-                     +.-..++.|||++||..||++|+|+.|+|.||||+.
T Consensus       332 mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~  411 (415)
T KOG0671|consen  332 MIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFAR  411 (415)
T ss_pred             HhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhc
Confidence                         1111111000                     001234789999999999999999999999999975


Q ss_pred             C
Q psy6046         227 K  227 (379)
Q Consensus       227 ~  227 (379)
                      .
T Consensus       412 ~  412 (415)
T KOG0671|consen  412 L  412 (415)
T ss_pred             C
Confidence            4

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.96  E-value=5.4e-29  Score=229.64  Aligned_cols=201  Identities=14%  Similarity=0.165  Sum_probs=156.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcE---EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKRE---VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~---~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..+.||+|+||.||+|.++.+|+.   || +|....    .....+..|+.+++.++||||+++++++.+   +++++||
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~   86 (269)
T cd05065           8 IEEVIGAGEFGEVCRGRLKLPGKREIFVA-IKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEF   86 (269)
T ss_pred             EEeEecCCCCCeEEEEEEecCCCCceeEE-EEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEec
Confidence            456899999999999999887753   55 565443    224568899999999999999999998765   7899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|...                     .|+.|||+      +|++||||||+||+++.+   +.+||+|||++....
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~------~g~~H~dl~p~nili~~~---~~~kl~dfg~~~~~~  157 (269)
T cd05065          87 MENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSE------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRFLE  157 (269)
T ss_pred             CCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccChheEEEcCC---CcEEECCCccccccc
Confidence              5555443                     45566666      999999999999999875   899999999987654


Q ss_pred             cCccccc---cc---cCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         134 DGIEIRE---LL---GTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       134 ~~~~~~~---~~---gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      .......   ..   .+..|+||               |+||++|+|++ |..||...+..+....+... ...|.  ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~-~~~~~--~~  234 (269)
T cd05065         158 DDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQD-YRLPP--PM  234 (269)
T ss_pred             cCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcC-CcCCC--cc
Confidence            3221111   11   13468888               99999999886 99999888877777777543 22222  23


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .++..+.+++.+||..+|.+||++.+++.
T Consensus       235 ~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         235 DCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            67899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.96  E-value=6.4e-29  Score=233.55  Aligned_cols=201  Identities=16%  Similarity=0.111  Sum_probs=156.2

Q ss_pred             ccCcCCCCceEEEEEEEcC-------CCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceE
Q psy6046           8 SHVGGNRARSSCSRKPEKT-------TKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~-------tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~   72 (379)
                      ...||+|+||.||+|++..       ++..+| +|....    .....+.+|+.+++.+ +||||+++++++..   .|+
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~-iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   98 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVA-VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   98 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEE-eeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEE
Confidence            4589999999999997532       233455 555432    2235688999999999 79999999988665   789


Q ss_pred             EeeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          73 GLNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        73 v~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      ++||  +|+|.+.                                    .|+.|||+      +||+||||||+||+++.
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~------~givH~dlkp~Nili~~  172 (304)
T cd05101          99 IVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS------QKCIHRDLAARNVLVTE  172 (304)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH------CCeeecccccceEEEcC
Confidence            9999  5554332                                    45666666      99999999999999987


Q ss_pred             cCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      +   +.+||+|||+++.......   .....+++.|+||               |+|+++|+|++ |..||.+.+..+..
T Consensus       173 ~---~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~  249 (304)
T cd05101         173 N---NVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF  249 (304)
T ss_pred             C---CcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHH
Confidence            5   8999999999987643221   1223456779999               99999999998 89999998888888


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..+..+....   ....++..+.+|+.+||..+|.+|||+.+++..
T Consensus       250 ~~~~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         250 KLLKEGHRMD---KPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             HHHHcCCcCC---CCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence            8776654321   123678999999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.96  E-value=7.5e-29  Score=230.05  Aligned_cols=201  Identities=15%  Similarity=0.065  Sum_probs=154.2

Q ss_pred             CccCcCCCCceEEEEEEEcCC----CcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTT----KREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~t----g~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~   74 (379)
                      ..++||+|+||.||+|.+..+    +..++ +|....    .....+.+|+.+++.++||||++++++..+    .++++
T Consensus        10 ~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~-~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   88 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVF-VKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLY   88 (280)
T ss_pred             EeeeecccCCceEEEEEEecCCCCceeEEE-EEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEE
Confidence            346999999999999998773    34444 554432    223558899999999999999999997433    77888


Q ss_pred             eC--CchhhHH----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          75 NP--RPPVYQA----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        75 e~--~g~l~~~----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                      ++  .|++...                            .|+.|||+      .+++||||||+||+++++   +.+||+
T Consensus        89 ~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~------~~i~H~di~p~nil~~~~---~~~kl~  159 (280)
T cd05043          89 PYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK------RGVIHKDIAARNCVIDEE---LQVKIT  159 (280)
T ss_pred             EcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccCHhhEEEcCC---CcEEEC
Confidence            88  3443322                            45666666      999999999999999875   899999


Q ss_pred             ecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCC
Q psy6046         125 DFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDF  185 (379)
Q Consensus       125 DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~  185 (379)
                      |||+++.+.....   .....++..|+||               |+|+++|++++ |++||...+..+....+..+. ..
T Consensus       160 d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~-~~  238 (280)
T cd05043         160 DNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGY-RL  238 (280)
T ss_pred             CCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCC-CC
Confidence            9999986543221   1223456679999               99999999998 999998887777766665542 22


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.  ...+++++.+++.+||..||++|||+.+++.
T Consensus       239 ~~--~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         239 AQ--PINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             CC--CCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            22  2357899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=5.3e-29  Score=233.23  Aligned_cols=198  Identities=15%  Similarity=0.132  Sum_probs=141.2

Q ss_pred             ccCcCCCCceEEEEEEEcCC---CcEEEEEEecccccc--------------hHHHHHHHHHHhCCCCCcceeeeecCc-
Q psy6046           8 SHVGGNRARSSCSRKPEKTT---KREVVQWKERNVSQG--------------VVIVDEEQLLKLIKVEPIEKYYSLDPE-   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t---g~~~a~~k~~~~~~~--------------~~~~~E~~il~~l~hpnIv~~~~~~~~-   69 (379)
                      ..+||+|+||.||+|.+..+   +..+| +|.......              .....+...+..+.|++|+++++.... 
T Consensus        17 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~-~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~   95 (294)
T PHA02882         17 DKLIGCGGFGCVYETQCASDHCINNQAV-AKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSFK   95 (294)
T ss_pred             eeEEecCCCceEEEEEEcCCcccccceE-EEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeEe
Confidence            44899999999999998877   44444 454332111              012233345667789999999886432 


Q ss_pred             ------ceEEeeC-C---chhhHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEE
Q psy6046          70 ------PLLGLNP-R---PPVYQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIK  122 (379)
Q Consensus        70 ------~~~v~e~-~---g~l~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ik  122 (379)
                            .++++++ .   ..++..                 .|+.|||+      .+|+||||||+|||++.+   +.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~iiHrDiKp~Nill~~~---~~~~  166 (294)
T PHA02882         96 RCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHE------HGISHGDIKPENIMVDGN---NRGY  166 (294)
T ss_pred             cCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CcEE
Confidence                  2455555 1   111111                 56777777      999999999999999875   7899


Q ss_pred             EeecccceeeccCc--------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh-HH-----
Q psy6046         123 VCDFEISRVILDGI--------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD-SE-----  173 (379)
Q Consensus       123 l~DFG~a~~~~~~~--------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~-~~-----  173 (379)
                      |+|||+|+.+....        ......||+.|+||               |+||++|+|++|++||.+.+. .+     
T Consensus       167 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~  246 (294)
T PHA02882        167 IIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAA  246 (294)
T ss_pred             EEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHh
Confidence            99999998764221        12235699999999               999999999999999987632 22     


Q ss_pred             ---HHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         174 ---TFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       174 ---~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                         ...++..+....     +.+++.+.+++..|+..+|.+||+++++++
T Consensus       247 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        247 KCDFIKRLHEGKIKI-----KNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             HHHHHHHhhhhhhcc-----CCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence               223333333322     346899999999999999999999999875

>KOG1026|consensus

Probab=99.96  E-value=5.1e-30  Score=255.67  Aligned_cols=200  Identities=19%  Similarity=0.174  Sum_probs=164.3

Q ss_pred             cCcCCCCceEEEEEEEcCCC----cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTK----REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg----~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +-||+|+||+||+|+...-.    +..|++|..+..    .++.|.||+++|..|+|||||++++++.+   +|+++|| 
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm  571 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYM  571 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEec
Confidence            36999999999999854332    223445555442    34679999999999999999999999876   8999999 


Q ss_pred             -CchhhHH----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcE
Q psy6046          77 -RPPVYQA----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDI  121 (379)
Q Consensus        77 -~g~l~~~----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~i  121 (379)
                       .|+|-+.                                  .++.||-+      +.+|||||-..|+|+.+.   ..|
T Consensus       572 ~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~------~~FVHRDLATRNCLVge~---l~V  642 (774)
T KOG1026|consen  572 DHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS------HHFVHRDLATRNCLVGEN---LVV  642 (774)
T ss_pred             ccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh------Ccccccchhhhhceeccc---eEE
Confidence             6666665                                  45778877      999999999999999985   899


Q ss_pred             EEeecccceeeccCcccccc---ccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCC
Q psy6046         122 KVCDFEISRVILDGIEIREL---LGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQ  182 (379)
Q Consensus       122 kl~DFG~a~~~~~~~~~~~~---~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~  182 (379)
                      ||+|||+++.....+.....   .=...||||               |+||++||+.+ |+.||.+.+.++++..|.++.
T Consensus       643 KIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~  722 (774)
T KOG1026|consen  643 KISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQ  722 (774)
T ss_pred             EecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCC
Confidence            99999999876554432222   223479999               99999999997 999999999999999999998


Q ss_pred             CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         183 LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       183 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      + ++.+  .++|.++.+||.+||..+|++||++.||-.
T Consensus       723 l-L~~P--e~CP~~vY~LM~~CW~~~P~~RPsF~eI~~  757 (774)
T KOG1026|consen  723 L-LSCP--ENCPTEVYSLMLECWNENPKRRPSFKEIHS  757 (774)
T ss_pred             c-ccCC--CCCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            7 4433  489999999999999999999999999743

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.4e-28  Score=225.58  Aligned_cols=199  Identities=17%  Similarity=0.187  Sum_probs=156.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ...||+|+||.||+|.+.. +..+| +|....  .....+.+|+.+++.++||||+++++++.+   .++++|+  +|+|
T Consensus        11 ~~~ig~g~~~~v~~~~~~~-~~~~~-vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   88 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNG-TTKVA-VKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSL   88 (261)
T ss_pred             eeeeccCcceEEEEEEEcC-CceEE-EEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCH
Confidence            3589999999999999764 45566 454443  234678999999999999999999998664   8999999  5555


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      .+.                      .|+.|||.      .|++|+||||+||+++++   +.++|+|||++........ 
T Consensus        89 ~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~------~~i~h~di~p~nili~~~---~~~~l~d~g~~~~~~~~~~~  159 (261)
T cd05034          89 LDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES------RNYIHRDLAARNILVGEN---LVCKIADFGLARLIEDDEYT  159 (261)
T ss_pred             HHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCcchheEEEcCC---CCEEECccccceeccchhhh
Confidence            443                      56677777      999999999999999986   8999999999987643221 


Q ss_pred             -ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 -IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 -~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....++..|+||               |+|+++|+|++ |+.||.+.+.......+..+.. .+  .....+.++.++
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  236 (261)
T cd05034         160 AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYR-MP--RPPNCPEELYDL  236 (261)
T ss_pred             hhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-CC--CCCCCCHHHHHH
Confidence             1122345678888               99999999998 9999998888878877765432 11  113568999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|.+||++++++.
T Consensus       237 i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         237 MLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             HHHHcccCcccCCCHHHHHH
Confidence            99999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0587|consensus

Probab=99.96  E-value=1.9e-29  Score=250.92  Aligned_cols=214  Identities=20%  Similarity=0.208  Sum_probs=173.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC-CCCcceeeeecC--------cceEEee
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK-VEPIEKYYSLDP--------EPLLGLN   75 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~-hpnIv~~~~~~~--------~~~~v~e   75 (379)
                      +.++||.|.||.||+++++.+|+..| +|+.+.  ...+.+..|.+||+.+. |||++.+|+++.        .+|+|||
T Consensus        23 i~evig~Gtygkv~k~k~~~~~~~aa-~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVME  101 (953)
T KOG0587|consen   23 IIEVIGNGTYGKVYKGRHVKTGQLAA-IKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVME  101 (953)
T ss_pred             EEEEEeeccceeEEEEeeeecCceee-eEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEee
Confidence            34599999999999999999998877 565554  44567888999999887 999999999754        3899999


Q ss_pred             C--CchhhHH-----------HHHH-----HHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          76 P--RPPVYQA-----------SATT-----KAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        76 ~--~g~l~~~-----------~al~-----~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |  +|+.-+.           ..+.     .|.++.+||...++|||+|-.|||++..   +.|||+|||++....... 
T Consensus       102 fC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e---~~VKLvDFGvSaQldsT~g  178 (953)
T KOG0587|consen  102 FCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTEN---AEVKLVDFGVSAQLDSTVG  178 (953)
T ss_pred             ccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEecc---CcEEEeeeeeeeeeecccc
Confidence            9  6766666           1222     2223444566999999999999999986   999999999999887654 


Q ss_pred             cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         137 EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       137 ~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..++.+|||+||||                    |||++..||..|.+|+....+...+-.|-+.+.+- --.+..++.+
T Consensus       179 rRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPk-Lkrp~kWs~~  257 (953)
T KOG0587|consen  179 RRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPK-LKRPKKWSKK  257 (953)
T ss_pred             cccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCcc-ccchhhHHHH
Confidence            45678899999999                    99999999999999998887766655554433211 1124578999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      +.+||..||..|..+||+..++|.|||+.
T Consensus       258 FndFIs~cL~Kd~e~RP~~~~ll~hpFi~  286 (953)
T KOG0587|consen  258 FNDFISTCLVKDYEQRPSTEELLKHPFIT  286 (953)
T ss_pred             HHHHHHHHHhhccccCcchhhhccCCccc
Confidence            99999999999999999999999999997

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.96  E-value=5.5e-29  Score=238.24  Aligned_cols=202  Identities=18%  Similarity=0.182  Sum_probs=150.1

Q ss_pred             CccCcCCCCceEEEEEEE-----cCCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc----ceE
Q psy6046           7 ASHVGGNRARSSCSRKPE-----KTTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLL   72 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~-----~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~   72 (379)
                      ..++||+|+||.||+|++     ..+++.|| +|....    .....+.+|+.++..+ +||||+++++++..    .++
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~l   89 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVA-VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMV   89 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEE-EEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEE
Confidence            456899999999999985     34566676 454433    1234588999999999 58999999987543    688


Q ss_pred             EeeC--CchhhHH-------------------------------------------------------------------
Q psy6046          73 GLNP--RPPVYQA-------------------------------------------------------------------   83 (379)
Q Consensus        73 v~e~--~g~l~~~-------------------------------------------------------------------   83 (379)
                      ++||  +|+|.+.                                                                   
T Consensus        90 v~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (343)
T cd05103          90 IVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQE  169 (343)
T ss_pred             EEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhh
Confidence            9999  5555322                                                                   


Q ss_pred             --------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---ccc
Q psy6046          84 --------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IRE  140 (379)
Q Consensus        84 --------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---~~~  140 (379)
                                          .|+.|||+      +||+||||||+||+++.+   +.+||+|||++........   ...
T Consensus       170 ~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~i~H~dikp~Nil~~~~---~~~kl~dfg~~~~~~~~~~~~~~~~  240 (343)
T cd05103         170 DLYKKVLTLEDLICYSFQVAKGMEFLAS------RKCIHRDLAARNILLSEN---NVVKICDFGLARDIYKDPDYVRKGD  240 (343)
T ss_pred             hhhhccCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCccCeEEEcCC---CcEEEEecccccccccCcchhhcCC
Confidence                                45666666      999999999999999875   8999999999976533221   112


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ..+++.|+||               |+|+++|+|++ |..||.+.... .....+..+.....+   ...++++.+++.+
T Consensus       241 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  317 (343)
T cd05103         241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP---DYTTPEMYQTMLD  317 (343)
T ss_pred             CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCC---CCCCHHHHHHHHH
Confidence            3355679999               99999999997 99999875433 333334333221111   2468899999999


Q ss_pred             hcccCCCCCCCHHHHhcC
Q psy6046         204 ILIKNPMERMTAKEALKH  221 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~h  221 (379)
                      ||..||++|||+.++++|
T Consensus       318 cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         318 CWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             HccCChhhCcCHHHHHHH
Confidence            999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=5.9e-29  Score=230.53  Aligned_cols=198  Identities=17%  Similarity=0.149  Sum_probs=147.7

Q ss_pred             CcCCCCceEEEEEEEcCCC----------------------c-EEEEEEeccccc---chHHHHHHHHHHhCCCCCccee
Q psy6046          10 VGGNRARSSCSRKPEKTTK----------------------R-EVVQWKERNVSQ---GVVIVDEEQLLKLIKVEPIEKY   63 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg----------------------~-~~a~~k~~~~~~---~~~~~~E~~il~~l~hpnIv~~   63 (379)
                      .||+|+||.||+|....++                      . ..+++|......   ...+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            6999999999999854332                      1 123466654422   3457889999999999999999


Q ss_pred             eeecCc---ceEEeeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-
Q psy6046          64 YSLDPE---PLLGLNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-  116 (379)
Q Consensus        64 ~~~~~~---~~~v~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-  116 (379)
                      ++++.+   .|++|||  +|.|...                     .|+.|||+      +||+||||||+||+++..+ 
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~iiH~dlkp~Nill~~~~~  155 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLED------KNLVHGNVCAKNILLARLGL  155 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHc------CCccCCCCCcccEEEeccCc
Confidence            998654   7899999  5555443                     56677777      9999999999999998641 


Q ss_pred             ---CCCcEEEeecccceeeccCccccccccCCCCcch----------------HHHHHHHHHh-hCCCCCCCCChHHHHH
Q psy6046         117 ---PNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLL-TGFSPFGGETDSETFR  176 (379)
Q Consensus       117 ---~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~ll-tg~~Pf~~~~~~~~~~  176 (379)
                         ....+|++|||++......   ....++..|+||                |+||++|+|+ +|..||.+.+..+...
T Consensus       156 ~~~~~~~~kl~d~g~~~~~~~~---~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~  232 (274)
T cd05076         156 AEGTSPFIKLSDPGVSFTALSR---EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKER  232 (274)
T ss_pred             ccCccceeeecCCccccccccc---cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHH
Confidence               1235899999998654222   223567778888                9999999985 7999998776655433


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+. .....|.    ..++.+.++|.+||..+|++|||+.+++++
T Consensus       233 ~~~-~~~~~~~----~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         233 FYE-KKHRLPE----PSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             HHH-hccCCCC----CCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence            332 2233333    356789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=1e-28  Score=228.39  Aligned_cols=202  Identities=17%  Similarity=0.214  Sum_probs=158.4

Q ss_pred             cCcCCCCceEEEEEEEcCCC----cEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTK----REVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg----~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..||+|+||.||+|+.+.++    ...+++|......    ...+.+|+++++.++||||+++++++.+   .|+++|| 
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   90 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYT   90 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEec
Confidence            47999999999999976543    2234466655422    3468999999999999999999998765   8999999 


Q ss_pred             -CchhhHH-----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeec
Q psy6046          77 -RPPVYQA-----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDF  126 (379)
Q Consensus        77 -~g~l~~~-----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DF  126 (379)
                       +|+|.+.                             .|++|||+      .||+||||||+||+++.+   +.++++||
T Consensus        91 ~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~------~~i~H~dlkp~Nili~~~---~~~~l~~~  161 (275)
T cd05046          91 DLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN------ARFVHRDLAARNCLVSSQ---REVKVSLL  161 (275)
T ss_pred             CCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh------cCcccCcCccceEEEeCC---CcEEEccc
Confidence             4555533                             45666666      999999999999999886   89999999


Q ss_pred             ccceeeccCc--cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         127 EISRVILDGI--EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       127 G~a~~~~~~~--~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      |++.......  ......++..|+||               |+|+++|+|++ |..||.+.+.......+..+....+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-  240 (275)
T cd05046         162 SLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPV-  240 (275)
T ss_pred             ccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCC-
Confidence            9986543221  12334556678888               99999999998 89999887777777777766554432 


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                       ...++..+.+++.+||..+|.+|||+.+++.+
T Consensus       241 -~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         241 -PEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             -CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence             23688999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.96  E-value=1.4e-28  Score=227.02  Aligned_cols=201  Identities=18%  Similarity=0.142  Sum_probs=149.8

Q ss_pred             CcCCCCceEEEEEEEcCCCc-EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKR-EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~-~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .||+|+||.||+|....++. .++++|....    .....+.+|+.+++.++||||+++++.+.+   .|+++||  +|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            58999999999997544432 2333454332    223568999999999999999999998765   7999999  566


Q ss_pred             hhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          80 VYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        80 l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |.+.                        .|+.|||+      .+++||||||+|||++.+   +.++|+|||++......
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~------~~i~H~dikp~nil~~~~---~~~~l~Dfg~~~~~~~~  152 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK------HNFLHSDLALRNCFLTSD---LTVKVGDYGIGPSRYKE  152 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH------CCeeccCCccceEEEcCC---ccEEecccccccccCcc
Confidence            6543                        45667776      999999999999999875   88999999998643221


Q ss_pred             c---cccccccCCCCcch----------------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhC-CCCCC-c
Q psy6046         136 I---EIRELLGTPDYVGK----------------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKA-QLDFP-D  187 (379)
Q Consensus       136 ~---~~~~~~gt~~y~aP----------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~-~~~~~-~  187 (379)
                      .   .....++++.|+||                      |+|+++|+|++ |.+||...+..+.+..+..+ ....+ +
T Consensus       153 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  232 (268)
T cd05086         153 DYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKP  232 (268)
T ss_pred             hhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCC
Confidence            1   11234566777777                      89999999996 67899877777666665443 22222 2


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .....+++.+.+++..|| .+|.+|||++++++
T Consensus       233 ~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         233 QLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             ccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence            223457899999999999 68999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=9.7e-29  Score=227.51  Aligned_cols=205  Identities=15%  Similarity=0.142  Sum_probs=145.4

Q ss_pred             cCcCCCCceEEEEEEEcCCC-----------cEEEEEEeccccc---chHHHHHHHHHHhCCCCCcceeeeecCc---ce
Q psy6046           9 HVGGNRARSSCSRKPEKTTK-----------REVVQWKERNVSQ---GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PL   71 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg-----------~~~a~~k~~~~~~---~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~   71 (379)
                      +.||+|+||.||+|+...++           ...+++|......   ...+.+|+.+++.++||||+++++++.+   .+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            36899999999999854322           1124466654432   2457889999999999999999998654   78


Q ss_pred             EEeeC--CchhhHH---------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC----CCcEEEeecccce
Q psy6046          72 LGLNP--RPPVYQA---------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP----NCDIKVCDFEISR  130 (379)
Q Consensus        72 ~v~e~--~g~l~~~---------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~----~~~ikl~DFG~a~  130 (379)
                      +++||  +|.+...               .+.+.+..+.++|++||+||||||+|||++.++.    ...++++|||++.
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~  160 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI  160 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence            99999  4443322               2223333333334499999999999999986421    1238999999986


Q ss_pred             eeccCccccccccCCCCcch----------------HHHHHHHHHh-hCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         131 VILDGIEIRELLGTPDYVGK----------------SLGVTAYVLL-TGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~ll-tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      .....   ....++..|+||                |+||++|+|+ +|..||.+....+... +.........    ..
T Consensus       161 ~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~-~~~~~~~~~~----~~  232 (262)
T cd05077         161 TVLSR---QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKER-FYEGQCMLVT----PS  232 (262)
T ss_pred             cccCc---ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHH-HHhcCccCCC----CC
Confidence            54322   234577889999                9999999998 5899998766544432 2223222222    24


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ++++.+||.+||..||.+||++.+++++
T Consensus       233 ~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         233 CKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             hHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence            6889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.96  E-value=1.2e-28  Score=232.84  Aligned_cols=202  Identities=17%  Similarity=0.154  Sum_probs=154.9

Q ss_pred             CccCcCCCCceEEEEEEEcCC------CcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTT------KREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~t------g~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~   72 (379)
                      ....||+|+||.||+|++..+      ....+++|.....    ....+.+|+.+++.+ +||||+++++++.+   +|+
T Consensus        16 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (314)
T cd05099          16 LGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYV   95 (314)
T ss_pred             eeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEE
Confidence            345899999999999986432      2233445654432    234578999999999 59999999998664   889


Q ss_pred             EeeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          73 GLNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        73 v~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      ++||  +|+|.+.                                    .|+.|||+      +|++||||||+||+++.
T Consensus        96 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~------~gi~H~dlkp~Nill~~  169 (314)
T cd05099          96 IVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES------RRCIHRDLAARNVLVTE  169 (314)
T ss_pred             EEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH------CCeeeccccceeEEEcC
Confidence            9999  5555432                                    45666666      99999999999999987


Q ss_pred             cCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      +   +.+||+|||+++.......   .....+++.|+||               |+|+++|+|++ |..||.+.+..+..
T Consensus       170 ~---~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~  246 (314)
T cd05099         170 D---NVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELF  246 (314)
T ss_pred             C---CcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            5   8899999999976543211   1122344679999               99999999999 99999988888887


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+..+...   .....++.++.+++.+||..+|++|||+.++++
T Consensus       247 ~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         247 KLLREGHRM---DKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             HHHHcCCCC---CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            777665321   112367899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=1e-28  Score=231.22  Aligned_cols=203  Identities=14%  Similarity=0.097  Sum_probs=150.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCC------------c--EEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK------------R--EVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg------------~--~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~   69 (379)
                      .+.||+|+||.||+|++..++            .  .|| +|.....    ....+.+|+++++.++|||++++++++..
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~   88 (295)
T cd05097          10 KEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVA-VKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVS   88 (295)
T ss_pred             hhccCCCCCceEEecccccchhhccccCcccCCCceEEE-EEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcC
Confidence            468999999999999876532            2  244 5554432    23468899999999999999999998654


Q ss_pred             ---ceEEeeC--CchhhHH--------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEE
Q psy6046          70 ---PLLGLNP--RPPVYQA--------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVM  112 (379)
Q Consensus        70 ---~~~v~e~--~g~l~~~--------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill  112 (379)
                         .|+++||  +|+|.+.                                .|+.|||+      +|++||||||+||++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~------~~i~H~dlkp~Nill  162 (295)
T cd05097          89 DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS------LNFVHRDLATRNCLV  162 (295)
T ss_pred             CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh------cCeeccccChhhEEE
Confidence               8999999  5544321                                45666666      999999999999999


Q ss_pred             eecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh--CCCCCCCCChH
Q psy6046         113 MGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT--GFSPFGGETDS  172 (379)
Q Consensus       113 ~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt--g~~Pf~~~~~~  172 (379)
                      +.+   +.+||+|||++........   .....+++.|+||               |+||++|+|++  |..||...+..
T Consensus       163 ~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~  239 (295)
T cd05097         163 GNH---YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE  239 (295)
T ss_pred             cCC---CcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH
Confidence            875   7899999999976543321   1223446689999               99999999988  77899877766


Q ss_pred             HHHHHHHh----CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         173 ETFRNISK----AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       173 ~~~~~i~~----~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +....+..    ..........+.+++.+.+|+.+||..||++|||++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         240 QVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             HHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            65554422    1111111122357899999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.96  E-value=1.5e-28  Score=225.69  Aligned_cols=200  Identities=16%  Similarity=0.169  Sum_probs=156.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cchh
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPV   80 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l   80 (379)
                      ....||+|+||.||+|.+.. +..+| +|.....  ....+.+|+.+++.++||||+++++.+.+  .|+++||  +|++
T Consensus        10 ~~~~lg~g~~~~vy~~~~~~-~~~~~-iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~L   87 (260)
T cd05073          10 LEKKLGAGQFGEVWMATYNK-HTKVA-VKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSL   87 (260)
T ss_pred             EEeEecCccceEEEEEEecC-CccEE-EEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCcH
Confidence            34589999999999998554 34455 4544332  24568899999999999999999888665  7899999  5666


Q ss_pred             hHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          81 YQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        81 ~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      .+.                      .|+.|||.      .|++||||||+||+++..   +.+||+|||.+........ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~------~~i~H~dl~p~ni~i~~~---~~~~l~d~~~~~~~~~~~~~  158 (260)
T cd05073          88 LDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ------RNYIHRDLRAANILVSAS---LVCKIADFGLARVIEDNEYT  158 (260)
T ss_pred             HHHHHhCCccccCHHHHHHHHHHHHHHHHHHHh------CCccccccCcceEEEcCC---CcEEECCCcceeeccCCCcc
Confidence            544                      56777777      999999999999999875   8999999999987643321 


Q ss_pred             -ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 -IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 -~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....++..|+||               |+||++|++++ |.+||.+.+.......+..+.. .+  .....+.++.++
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  235 (260)
T cd05073         159 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR-MP--RPENCPEELYNI  235 (260)
T ss_pred             cccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCC-CC--CcccCCHHHHHH
Confidence             1123345678888               99999999998 9999998877777776665432 12  224688999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy6046         201 IAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||..+|++||++.+++.
T Consensus       236 i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         236 MMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             HHHHcccCcccCcCHHHHHH
Confidence            99999999999999998865

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.96  E-value=1.7e-28  Score=224.36  Aligned_cols=199  Identities=17%  Similarity=0.152  Sum_probs=156.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ..||+|+||.||+|.+.. +..+| +|.....  ....+.+|+++++.++||||+++++++.+   .|+++||  +|.|.
T Consensus        10 ~~ig~g~~g~v~~~~~~~-~~~~~-~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~   87 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLE-KRKVA-IKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLS   87 (256)
T ss_pred             eeecCcccceEEEEEEeC-CCeEE-EEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHH
Confidence            479999999999998754 55666 4544332  23568999999999999999999988654   7899998  55554


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--c
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--I  138 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--~  138 (379)
                      +.                     .++.+||+      .|++||||||+||+++.+   +.++|+|||++........  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~i~h~dl~p~ni~i~~~---~~~~l~d~g~~~~~~~~~~~~~  158 (256)
T cd05112          88 DYLRAQRGKFSQETLLGMCLDVCEGMAYLES------SNVIHRDLAARNCLVGEN---QVVKVSDFGMTRFVLDDQYTSS  158 (256)
T ss_pred             HHHHhCccCCCHHHHHHHHHHHHHHHHHHHH------CCccccccccceEEEcCC---CeEEECCCcceeecccCccccc
Confidence            33                     45566666      999999999999999875   7899999999976543321  1


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....++..|+||               |+|+++|+|++ |.+||......+....+..+...+.+   ...+..+.+|+.
T Consensus       159 ~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~  235 (256)
T cd05112         159 TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKP---RLASQSVYELMQ  235 (256)
T ss_pred             CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHH
Confidence            122345678999               99999999998 99999988888888777665333222   246899999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q psy6046         203 KILIKNPMERMTAKEALKH  221 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +||..+|++|||+.+++++
T Consensus       236 ~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         236 HCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             HHcccChhhCCCHHHHHHh
Confidence            9999999999999999863

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.96  E-value=1.8e-28  Score=228.59  Aligned_cols=199  Identities=14%  Similarity=0.088  Sum_probs=155.6

Q ss_pred             cCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..||+|+||.||+|.+..     ++..+| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   89 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVA-VKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEY   89 (288)
T ss_pred             ccccccccccEEEEEEcccCCCCcceeEE-EEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEec
Confidence            378999999999998753     455666 5554432    13458889999999999999999998665   7999999


Q ss_pred             --CchhhHH------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEE
Q psy6046          77 --RPPVYQA------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVM  112 (379)
Q Consensus        77 --~g~l~~~------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill  112 (379)
                        +|+|.+.                                          .|+.|||.      .|++||||||+||++
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~------~~i~H~dl~p~nil~  163 (288)
T cd05050          90 MAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE------RKFVHRDLATRNCLV  163 (288)
T ss_pred             CCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh------CCeecccccHhheEe
Confidence              4444322                                          45666666      999999999999999


Q ss_pred             eecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHH
Q psy6046         113 MGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSE  173 (379)
Q Consensus       113 ~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~  173 (379)
                      +.+   +.++|+|||++........   .....++..|+||               |+||++|+|++ |..||.+.+..+
T Consensus       164 ~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~  240 (288)
T cd05050         164 GEN---MVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE  240 (288)
T ss_pred             cCC---CceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            875   8999999999876533221   1223345679999               99999999997 889999888888


Q ss_pred             HHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         174 TFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ....+..+.....   ...++.++.+||.+||..+|.+|||+.|++.
T Consensus       241 ~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         241 VIYYVRDGNVLSC---PDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             HHHHHhcCCCCCC---CCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            8887776654321   2357899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=1.1e-28  Score=229.45  Aligned_cols=199  Identities=19%  Similarity=0.143  Sum_probs=147.4

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEee
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e   75 (379)
                      .+||+|+||+||++.    ...++..+| +|.....    ....+.+|+++++.++||||+++++++.+     .|+++|
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVA-VKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIME   88 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEE-EEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEec
Confidence            489999999998865    334566666 5554432    23567899999999999999999987532     689999


Q ss_pred             C--CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P--RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~--~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      |  +|++.+.                   .|+.|||+      +||+||||||+||+++.+   +.++|+|||+++....
T Consensus        89 ~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~~l~dfg~~~~~~~  159 (283)
T cd05080          89 YVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHS------QHYIHRDLAARNVLLDND---RLVKIGDFGLAKAVPE  159 (283)
T ss_pred             CCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH------CCeeccccChheEEEcCC---CcEEEeecccccccCC
Confidence            9  6666654                   56777777      999999999999999875   8899999999987643


Q ss_pred             Ccc----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH--HH-------------HHHHHh
Q psy6046         135 GIE----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS--ET-------------FRNISK  180 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~--~~-------------~~~i~~  180 (379)
                      ...    .....++..|+||               |+|+++|+|++|..||......  +.             ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (283)
T cd05080         160 GHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLER  239 (283)
T ss_pred             cchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhc
Confidence            321    1123355678888               9999999999999998643211  00             111111


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      + ...+  ....++..+.+++.+||..+|++|||+++++.
T Consensus       240 ~-~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         240 G-MRLP--CPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             C-CCCC--CCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            1 1111  12357899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=8.7e-29  Score=233.05  Aligned_cols=203  Identities=16%  Similarity=0.138  Sum_probs=155.2

Q ss_pred             cCccCcCCCCceEEEEEEEcCCC-------cEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---c
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTK-------REVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---P   70 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg-------~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~   70 (379)
                      ...+.||+|+||.||+|++...+       ..+| +|.....    ....+.+|+.+++.+ +||||+++++++.+   .
T Consensus        21 ~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   99 (307)
T cd05098          21 VLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVA-VKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPL   99 (307)
T ss_pred             EEeeeeccCCCeeEEEeEEeccCCcccCccceEE-EEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCce
Confidence            34568999999999999875432       3355 5555432    234588899999999 79999999998654   8


Q ss_pred             eEEeeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEE
Q psy6046          71 LLGLNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVM  112 (379)
Q Consensus        71 ~~v~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill  112 (379)
                      |+++||  +|+|.+.                                    .|++|||+      +|++||||||+||++
T Consensus       100 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~------~gi~H~dlkp~Nill  173 (307)
T cd05098         100 YVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS------KKCIHRDLAARNVLV  173 (307)
T ss_pred             EEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH------CCcccccccHHheEE
Confidence            899999  4444322                                    45677777      999999999999999


Q ss_pred             eecCCCCcEEEeecccceeeccCccc---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHH
Q psy6046         113 MGDFPNCDIKVCDFEISRVILDGIEI---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSE  173 (379)
Q Consensus       113 ~~~~~~~~ikl~DFG~a~~~~~~~~~---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~  173 (379)
                      +.+   +.+||+|||+++........   ....+++.|+||               |+||++|+|++ |..||.+.+..+
T Consensus       174 ~~~---~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~  250 (307)
T cd05098         174 TED---NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE  250 (307)
T ss_pred             cCC---CcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHH
Confidence            875   89999999998765432211   112244679999               99999999998 999998888777


Q ss_pred             HHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         174 TFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ....+..+...   .....++.++.+|+.+||..+|.+|||+.+++++
T Consensus       251 ~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         251 LFKLLKEGHRM---DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             HHHHHHcCCCC---CCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            77776655421   1223578999999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.96  E-value=1.4e-28  Score=225.11  Aligned_cols=198  Identities=16%  Similarity=0.126  Sum_probs=148.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE---------EEEEEeccccc--chHHHHHHHHHHhCCCCCcceeeeecC--cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE---------VVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIEKYYSLDP--EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~---------~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~~--~~~~v~e   75 (379)
                      +.||+|+||.||+|.+..++..         .++.|......  ...+.+|+.+++.++||||+++++++.  ..++++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e   80 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEE   80 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEE
Confidence            4699999999999999887721         23355544332  467889999999999999999998764  5899999


Q ss_pred             C--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC----CCCcEEEeeccc
Q psy6046          76 P--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF----PNCDIKVCDFEI  128 (379)
Q Consensus        76 ~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~----~~~~ikl~DFG~  128 (379)
                      |  +|+|...                     .|+.|||+      +||+||||||+||+++.++    ....+||+|||+
T Consensus        81 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~------~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          81 YVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLED------KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             cCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhh------CCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            9  6666655                     45666666      9999999999999999762    112699999999


Q ss_pred             ceeeccCccccccccCCCCcch-----------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP-----------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      +.....   .....++..|+||                 |+|+++|+|++ |..||...+..+........ ...+.   
T Consensus       155 a~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~-~~~~~---  227 (259)
T cd05037         155 PITVLS---REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQ-HRLPM---  227 (259)
T ss_pred             cccccc---ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcC-CCCCC---
Confidence            976533   1223455667777                 99999999999 68888776544433333221 11121   


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                       ..+..+.++|.+||..+|.+|||+.++++
T Consensus       228 -~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         228 -PDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             -CCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence             12488999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.96  E-value=1.6e-28  Score=234.06  Aligned_cols=202  Identities=16%  Similarity=0.136  Sum_probs=155.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc------EEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR------EVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~------~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v   73 (379)
                      ...||+|+||.||+|++...++      ..+++|....    .....+.+|+.+++.+ +||||+++++++.+   .|++
T Consensus        17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv   96 (334)
T cd05100          17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVL   96 (334)
T ss_pred             cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEE
Confidence            4579999999999998654322      2333565443    2235688999999999 79999999998764   7899


Q ss_pred             eeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec
Q psy6046          74 LNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD  115 (379)
Q Consensus        74 ~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~  115 (379)
                      +||  +|+|.+.                                    .|+.|||.      +||+||||||+||+++.+
T Consensus        97 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~------~givH~dlkp~Nill~~~  170 (334)
T cd05100          97 VEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS------QKCIHRDLAARNVLVTED  170 (334)
T ss_pred             EecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH------CCeeccccccceEEEcCC
Confidence            999  5554432                                    44556665      999999999999999875


Q ss_pred             CCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHH
Q psy6046         116 FPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFR  176 (379)
Q Consensus       116 ~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~  176 (379)
                         +.+||+|||+++.......   .....++..|+||               |+|+++|+|++ |..||.+.+..+...
T Consensus       171 ---~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~  247 (334)
T cd05100         171 ---NVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFK  247 (334)
T ss_pred             ---CcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence               8999999999986543221   1122345679999               99999999998 899999988888887


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+..+...   .....++.++.+++.+||..+|.+|||+.+++++
T Consensus       248 ~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         248 LLKEGHRM---DKPANCTHELYMIMRECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             HHHcCCCC---CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            77654322   1223578999999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=6.4e-29  Score=225.31  Aligned_cols=189  Identities=19%  Similarity=0.191  Sum_probs=146.2

Q ss_pred             CCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH-----
Q psy6046          14 RARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA-----   83 (379)
Q Consensus        14 G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~-----   83 (379)
                      |+||.||+|+++.+|+.||+++.....   ...+|...+....||||+++++.+.+   +|+++||  +|+|++.     
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   80 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS---EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL   80 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh---hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc
Confidence            899999999999999999854443322   23455666666779999999987654   8999999  6777654     


Q ss_pred             ---------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCc
Q psy6046          84 ---------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV  148 (379)
Q Consensus        84 ---------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~  148 (379)
                                     .|+.|||+      .||+||||||+||+++.+   +.++++|||.+......  .....++..|+
T Consensus        81 ~l~~~~~~~~~~ql~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~~l~df~~~~~~~~~--~~~~~~~~~y~  149 (237)
T cd05576          81 NIPEECVKRWAAEMVVALDALHR------EGIVCRDLNPNNILLDDR---GHIQLTYFSRWSEVEDS--CDGEAVENMYC  149 (237)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHEEEcCC---CCEEEecccchhccccc--cccCCcCcccc
Confidence                           56777777      999999999999999986   78999999988665332  23345567788


Q ss_pred             ch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCC
Q psy6046         149 GK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM  213 (379)
Q Consensus       149 aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  213 (379)
                      ||               |+|+++|+|++|..||...... . .  .......|    ..+++.++++|.+||..||++||
T Consensus       150 aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-~-~--~~~~~~~~----~~~~~~~~~li~~~l~~dp~~R~  221 (237)
T cd05576         150 APEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG-I-N--THTTLNIP----EWVSEEARSLLQQLLQFNPTERL  221 (237)
T ss_pred             CCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh-c-c--cccccCCc----ccCCHHHHHHHHHHccCCHHHhc
Confidence            88               9999999999999988643221 0 0  00111222    35789999999999999999999


Q ss_pred             CH-----HHHhcCccc
Q psy6046         214 TA-----KEALKHPWL  224 (379)
Q Consensus       214 t~-----~e~l~hp~~  224 (379)
                      |+     +++++||||
T Consensus       222 ~~~~~~~~~~~~h~~~  237 (237)
T cd05576         222 GAGVAGVEDIKSHPFF  237 (237)
T ss_pred             CCCccchHHHHcCCCC
Confidence            85     999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.96  E-value=3.4e-28  Score=224.21  Aligned_cols=208  Identities=18%  Similarity=0.158  Sum_probs=158.9

Q ss_pred             ccCcCCCCceEEEEEEEcC-CCcEEEEEEeccc-------------ccchHHHHHHHHHHh-CCCCCcceeeeecCc---
Q psy6046           8 SHVGGNRARSSCSRKPEKT-TKREVVQWKERNV-------------SQGVVIVDEEQLLKL-IKVEPIEKYYSLDPE---   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~-tg~~~a~~k~~~~-------------~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~---   69 (379)
                      ...||+|+||.||+|.+.. +++.+| +|....             .....+.+|+.+++. ++||||+++++++.+   
T Consensus         5 ~~~ig~G~~~~v~~~~~~~~~~~~~a-vk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   83 (269)
T cd08528           5 LEHLGSGAFGCVYKVRKKNNGQNLLA-LKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDR   83 (269)
T ss_pred             hhhhcCCCCceEEEEEEcCCCCceee-eeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCe
Confidence            3579999999999999988 555566 443321             112347788888865 799999999998665   


Q ss_pred             ceEEeeC--CchhhHH------------------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          70 PLLGLNP--RPPVYQA------------------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        70 ~~~v~e~--~g~l~~~------------------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      .|+++||  ++++.+.                  .+.+.+..+.++|+ .|++|+||+|+||+++.+   +.++|+|||+
T Consensus        84 ~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~---~~~~l~dfg~  160 (269)
T cd08528          84 LYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGED---DKVTITDFGL  160 (269)
T ss_pred             EEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCC---CcEEEecccc
Confidence            8999999  5555543                  12233334444553 789999999999999886   8999999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      +.............|+..|+||               |+|+++|+|++|++||...........+..+......  ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~  238 (269)
T cd08528         161 AKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLP--EGMY  238 (269)
T ss_pred             eeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCC--cccC
Confidence            9876554444556788899999               9999999999999999887777666666655443222  1257


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ++.+.++|.+||..||++||++.|+..+
T Consensus       239 ~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         239 SEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             CHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence            8999999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.96  E-value=2.4e-28  Score=225.61  Aligned_cols=200  Identities=18%  Similarity=0.179  Sum_probs=152.2

Q ss_pred             ccCcCCCCceEEEEEEEcC---CCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------c
Q psy6046           8 SHVGGNRARSSCSRKPEKT---TKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------P   70 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~---tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~   70 (379)
                      ..+||+|+||.||+|....   ++..+| +|....     ...+.+.+|+.+++.++||||+++++++..         .
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   82 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVA-VKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIP   82 (273)
T ss_pred             hhcccCCCCCCEEeeEeeccCCCceEEE-EEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccce
Confidence            3589999999999998654   456666 454432     223468899999999999999999997532         3


Q ss_pred             eEEeeC--CchhhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEE
Q psy6046          71 LLGLNP--RPPVYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIK  122 (379)
Q Consensus        71 ~~v~e~--~g~l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ik  122 (379)
                      +++++|  +|.+...                          .|+.|||+      .||+||||||+||+++++   +.+|
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~------~~i~H~dikp~nili~~~---~~~k  153 (273)
T cd05074          83 MVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS------KNFIHRDLAARNCMLNEN---MTVC  153 (273)
T ss_pred             EEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeecccchhhEEEcCC---CCEE
Confidence            677777  4554321                          45677776      999999999999999875   8899


Q ss_pred             EeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCC
Q psy6046         123 VCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQL  183 (379)
Q Consensus       123 l~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~  183 (379)
                      |+|||+++.......   .....+++.|++|               |+||++|+|++ |++||.+.+..+....+..+..
T Consensus       154 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~  233 (273)
T cd05074         154 VADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNR  233 (273)
T ss_pred             ECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCc
Confidence            999999986543221   1223345678888               99999999999 9999988877777776665432


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ...   ....++.+.+++.+||..+|++|||+.+++.
T Consensus       234 ~~~---~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~  267 (273)
T cd05074         234 LKQ---PPDCLEDVYELMCQCWSPEPKCRPSFQHLRD  267 (273)
T ss_pred             CCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            211   1357899999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=3.4e-28  Score=226.11  Aligned_cols=201  Identities=16%  Similarity=0.120  Sum_probs=147.2

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-   76 (379)
                      ..||+|+||.||+|.    +..++..||+++.....  ....+.+|+++++.++||||+++++++.     .+|+++|| 
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   89 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYL   89 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEec
Confidence            479999999999997    44567777754433222  2346889999999999999999988643     27899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||.      +||+||||||+||+++++   +.+||+|||++.....
T Consensus        90 ~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~------~~i~H~dlkp~nili~~~---~~~~l~dfg~~~~~~~  160 (284)
T cd05081          90 PYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGS------KRYVHRDLATRNILVESE---NRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             CCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCCHhhEEECCC---CeEEECCCcccccccC
Confidence             6666654                     55677777      999999999999999875   7899999999987643


Q ss_pred             Cccc----cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHH---------------HHHHHHh
Q psy6046         135 GIEI----RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSE---------------TFRNISK  180 (379)
Q Consensus       135 ~~~~----~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~---------------~~~~i~~  180 (379)
                      ....    ....++..|+||               |+|+++|+|++|..|+.......               .+..+..
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLK  240 (284)
T ss_pred             CCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHh
Confidence            3211    111234458888               99999999999887764332110               0111111


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ....++  ....++.++.+|+.+||..+|++|||+.+++.
T Consensus       241 ~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         241 NNGRLP--APPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             cCCcCC--CCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            112222  12367899999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.96  E-value=3.3e-28  Score=227.85  Aligned_cols=201  Identities=16%  Similarity=0.131  Sum_probs=148.7

Q ss_pred             ccCcCCCCceEEEEEEEcCC----------------CcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeec
Q psy6046           8 SHVGGNRARSSCSRKPEKTT----------------KREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLD   67 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t----------------g~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~   67 (379)
                      .+.||+|+||.||+|.+..+                +..+| +|.....    ....+.+|+.+++.++||||+++++++
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~   88 (296)
T cd05095          10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVA-VKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVC   88 (296)
T ss_pred             eeeccCCCCCeEEecccccccccccccccccCCCCceeEEE-EEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            45899999999999865432                22344 5555432    235688999999999999999999886


Q ss_pred             Cc---ceEEeeC--CchhhHH-------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEE
Q psy6046          68 PE---PLLGLNP--RPPVYQA-------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLV  111 (379)
Q Consensus        68 ~~---~~~v~e~--~g~l~~~-------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nil  111 (379)
                      .+   .|+++||  +|+|...                               .|+.|||+      .|++||||||+||+
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~------~~i~H~dlkp~Nil  162 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS------LNFVHRDLATRNCL  162 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH------CCeecccCChheEE
Confidence            54   8999998  5555432                               45666666      99999999999999


Q ss_pred             EeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh--CCCCCCCCCh
Q psy6046         112 MMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT--GFSPFGGETD  171 (379)
Q Consensus       112 l~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt--g~~Pf~~~~~  171 (379)
                      ++.+   +.++|+|||+++.......   .....+++.|+||               |+||++|+|++  |..||...+.
T Consensus       163 i~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05095         163 VGKN---YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSD  239 (296)
T ss_pred             EcCC---CCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccCh
Confidence            9875   8999999999976533221   1223345678888               99999999998  7899987766


Q ss_pred             HHHHHHHHh-----C-CCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         172 SETFRNISK-----A-QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       172 ~~~~~~i~~-----~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.......     . ....+  ....+++.+.+|+.+||..||.+|||+.++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         240 EQVIENTGEFFRDQGRQVYLP--KPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             HHHHHHHHHHHhhccccccCC--CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            655443321     0 11111  12357899999999999999999999999865

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG1027|consensus

Probab=99.96  E-value=7.4e-30  Score=252.75  Aligned_cols=206  Identities=24%  Similarity=0.291  Sum_probs=159.5

Q ss_pred             ccCcCCCCceE-EEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-Cchhh
Q psy6046           8 SHVGGNRARSS-CSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~-V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~g~l~   81 (379)
                      ++++|.|+-|+ ||+|.  -.|++|| +|..-......+.+|+..|+.-+ |||||++|..-.+   .|++.|+ .-+|-
T Consensus       514 ~eilG~Gs~Gt~Vf~G~--ye~R~VA-VKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~sL~  590 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGV--YEGREVA-VKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCACSLQ  590 (903)
T ss_pred             HHHcccCCCCcEEEEEe--eCCceeh-HHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhhhHH
Confidence            35999998876 79998  6677888 66666655667899999999987 9999999998766   7888888 21111


Q ss_pred             HH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC--CCcEEEeecccceeeccC
Q psy6046          82 QA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP--NCDIKVCDFEISRVILDG  135 (379)
Q Consensus        82 ~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~~~~~~  135 (379)
                      +.                        .|++.||+      .+||||||||+|||++..+.  ...++|+|||+++.+..+
T Consensus       591 dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs------l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~  664 (903)
T KOG1027|consen  591 DLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS------LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG  664 (903)
T ss_pred             HHHhccccchhhcccccHHHHHHHHHHHHHHHHh------cccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence            11                        67777777      99999999999999998432  356899999999988654


Q ss_pred             c----cccccccCCCCcch---------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 I----EIRELLGTPDYVGK---------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~----~~~~~~gt~~y~aP---------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      .    ......||-.|+||               |+||++|+.++| ..||...-.  .-.+|..+.+....- -+.-..
T Consensus       665 ~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~--R~~NIl~~~~~L~~L-~~~~d~  741 (903)
T KOG1027|consen  665 KSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE--RQANILTGNYTLVHL-EPLPDC  741 (903)
T ss_pred             cchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHH--hhhhhhcCccceeee-ccCchH
Confidence            3    23456799999999               999999999985 999976433  334566665543311 011122


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ++.|||.+||.++|..||+|.++|.||+|=
T Consensus       742 eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW  771 (903)
T KOG1027|consen  742 EAKDLISRMLNPDPQLRPSATDVLNHPLFW  771 (903)
T ss_pred             HHHHHHHHhcCCCcccCCCHHHHhCCCccC
Confidence            899999999999999999999999999993

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=3.5e-28  Score=226.24  Aligned_cols=198  Identities=19%  Similarity=0.181  Sum_probs=148.1

Q ss_pred             CcCCCCceEEEEEEE----cCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC
Q psy6046          10 VGGNRARSSCSRKPE----KTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~----~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~   76 (379)
                      .||+|+||.||+|..    ..++..+| +|....    .....+.+|+.+++.++||||+++++++.+     .++++||
T Consensus        11 ~lg~g~~g~v~~~~~~~~~~~~~~~va-~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   89 (284)
T cd05079          11 DLGEGHFGKVELCRYDPEGDNTGEQVA-VKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEF   89 (284)
T ss_pred             ecCCCCceeEEEEEEccCCCCccceEE-EEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEc
Confidence            699999999999974    45566666 454432    223568899999999999999999887543     6899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|.+.                     .|+.|||+      +|++||||||+||+++.+   +.++|+|||+++...
T Consensus        90 ~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~------~gi~H~dlkp~Nil~~~~---~~~~l~dfg~~~~~~  160 (284)
T cd05079          90 LPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGS------RQYVHRDLAARNVLVESE---HQVKIGDFGLTKAIE  160 (284)
T ss_pred             cCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecccchheEEEcCC---CCEEECCCccccccc
Confidence              5666543                     56777777      999999999999999875   789999999998664


Q ss_pred             cCcc----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC---------------hHHHHHHHH
Q psy6046         134 DGIE----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS  179 (379)
Q Consensus       134 ~~~~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~---------------~~~~~~~i~  179 (379)
                      ....    .....++..|+||               |+|+++|+|+++..|+....               .......+.
T Consensus       161 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (284)
T cd05079         161 TDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLE  240 (284)
T ss_pred             cCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHH
Confidence            3321    1234566779998               99999999999877653211               111112222


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+. ..+  .+..++..+.+|+.+||..+|.+|||+.+++.
T Consensus       241 ~~~-~~~--~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  278 (284)
T cd05079         241 EGK-RLP--RPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIE  278 (284)
T ss_pred             cCc-cCC--CCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            221 112  23468999999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG4257|consensus

Probab=99.96  E-value=3.4e-29  Score=240.72  Aligned_cols=201  Identities=16%  Similarity=0.190  Sum_probs=163.8

Q ss_pred             CccCcCCCCceEEEEEEEcCC--CcEE-EEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTT--KREV-VQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~t--g~~~-a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~-   76 (379)
                      .+++||.|-||.||+|....-  |+.. |++|.-.    ..+.+.++.|..+|+.++||||+++++++.+  .|++||+ 
T Consensus       393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~  472 (974)
T KOG4257|consen  393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELA  472 (974)
T ss_pred             HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecc
Confidence            345899999999999986543  4443 2344332    2456889999999999999999999999887  8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       .|+|-.+                     .|+.|||+      ..+|||||-..|||+.+.   ..+||+|||+++.+.+
T Consensus       473 ~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeS------krfVHRDIAaRNiLVsSp---~CVKLaDFGLSR~~ed  543 (974)
T KOG4257|consen  473 PLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLES------KRFVHRDIAARNILVSSP---QCVKLADFGLSRYLED  543 (974)
T ss_pred             cchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh------hchhhhhhhhhheeecCc---ceeeecccchhhhccc
Confidence             6666666                     68899998      999999999999999985   7999999999998877


Q ss_pred             CccccccccCC--CCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         135 GIEIRELLGTP--DYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       135 ~~~~~~~~gt~--~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ........|..  .||||               =+||.+||++. |.-||.|-...+++-.+.+|....-   ++++++.
T Consensus       544 ~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~---P~nCPp~  620 (974)
T KOG4257|consen  544 DAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPC---PPNCPPA  620 (974)
T ss_pred             cchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCC---CCCCChH
Confidence            66554444433  69999               79999999986 9999999877778877877753221   2479999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHh
Q psy6046         197 AKDFIAKILIKNPMERMTAKEAL  219 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l  219 (379)
                      +-.|+.+||+++|.+||++.++.
T Consensus       621 LYslmskcWayeP~kRPrftei~  643 (974)
T KOG4257|consen  621 LYSLMSKCWAYEPSKRPRFTEIK  643 (974)
T ss_pred             HHHHHHHHhccCcccCCcHHHHH
Confidence            99999999999999999877654

>KOG0664|consensus

Probab=99.96  E-value=6.4e-30  Score=224.49  Aligned_cols=210  Identities=21%  Similarity=0.252  Sum_probs=168.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeee--------cCcceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSL--------DPEPLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~--------~~~~~~v~e~-   76 (379)
                      -||-|+||+||.++|..+|+.++.+|..+.    .....+.+|+.+|..++|.|+....++        ++++|+++|+ 
T Consensus        60 PIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELm  139 (449)
T KOG0664|consen   60 PIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELM  139 (449)
T ss_pred             cccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            799999999999999999999998777665    335679999999999999999876664        5568888888 


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +.+|...                    .++.|||+      .||.||||||.|+|+++   |+.+||||||+++....++
T Consensus       140 QSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHs------A~ILHRDIKPGNLLVNS---NCvLKICDFGLARvee~d~  210 (449)
T KOG0664|consen  140 QSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHT------ANILHRDIKPGNLLVNS---NCILKICDFGLARTWDQRD  210 (449)
T ss_pred             HhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhh------cchhhccCCCccEEecc---CceEEecccccccccchhh
Confidence            3333333                    67888888      99999999999999998   4999999999999875443


Q ss_pred             --cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHh------------------
Q psy6046         137 --EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISK------------------  180 (379)
Q Consensus       137 --~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~------------------  180 (379)
                        .++..+-|.+|.||                |.|||+.|||-.+..|.+.++.+.++.|..                  
T Consensus       211 ~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk  290 (449)
T KOG0664|consen  211 RLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAK  290 (449)
T ss_pred             hhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhH
Confidence              34555678889999                999999999999999999888777766522                  


Q ss_pred             -----CCCCCCcc-------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         181 -----AQLDFPDE-------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       181 -----~~~~~~~~-------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                           +....|..       ....-..++.+++.++|..||.+|.+.++++.|+|....+
T Consensus       291 ~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  291 NHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             HHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccccccccc
Confidence                 11111210       0112345788999999999999999999999999997755

>KOG1095|consensus

Probab=99.96  E-value=2.9e-28  Score=251.23  Aligned_cols=198  Identities=17%  Similarity=0.200  Sum_probs=161.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE-----EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE-----VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~-----~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+||+|+||.||.|........     || +|....    .+...+++|..+|+.++|||||++++++-+   +++++||
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~va-iK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~ley  776 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVA-VKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEY  776 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEE-EEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehh
Confidence            4899999999999987554322     44 454433    334669999999999999999999999765   8999999


Q ss_pred             --CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 --RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 --~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                        +|+|..+                           .+..||++      +++|||||-..|+|++.+   ..+||+|||
T Consensus       777 M~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~------~~fvHRDLAaRNCLL~~~---r~VKIaDFG  847 (1025)
T KOG1095|consen  777 MEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES------KHFVHRDLAARNCLLDER---RVVKIADFG  847 (1025)
T ss_pred             cccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh------CCCcCcchhhhheeeccc---CcEEEcccc
Confidence              8888887                           56778877      999999999999999997   899999999


Q ss_pred             cceeeccCccccc--c-ccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCC-CCCCc
Q psy6046         128 ISRVILDGIEIRE--L-LGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQ-LDFPD  187 (379)
Q Consensus       128 ~a~~~~~~~~~~~--~-~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~-~~~~~  187 (379)
                      +|+-+...+....  . .-...||||               |+||++||++| |..||.+.+..+++..+..+. ++.| 
T Consensus       848 lArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P-  926 (1025)
T KOG1095|consen  848 LARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPP-  926 (1025)
T ss_pred             hhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCC-
Confidence            9995544332211  1 112479999               99999999998 999999999999988666654 3333 


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                         ..++..+-++|..||..+|++||++..+++
T Consensus       927 ---~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  927 ---SYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ---CCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence               368999999999999999999999999987

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=1.2e-27  Score=221.80  Aligned_cols=200  Identities=18%  Similarity=0.158  Sum_probs=149.4

Q ss_pred             cCcCCCCceEEEEEEEcC----CCcEEEEEEecccc-c---chHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKT----TKREVVQWKERNVS-Q---GVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~----tg~~~a~~k~~~~~-~---~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e   75 (379)
                      ..||+|+||.||+|....    +++.+| +|..... .   ...+.+|+.+++.++||||+++++++..     .|+++|
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~a-vK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   88 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVA-VKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIME   88 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEE-EEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEe
Confidence            479999999999998643    466777 4544432 2   4568999999999999999999987654     789999


Q ss_pred             C--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          76 P--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        76 ~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      |  +|++.+.                     .|+.|||.      .|++||||||+||+++.+   +.++|+|||.+...
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~------~~i~H~dl~p~nil~~~~---~~~~l~dfg~~~~~  159 (284)
T cd05038          89 YLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGS------QRYIHRDLAARNILVESE---DLVKISDFGLAKVL  159 (284)
T ss_pred             cCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHhEEEcCC---CCEEEccccccccc
Confidence            9  5666544                     56777777      999999999999999885   89999999999876


Q ss_pred             ccCccc----cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHH--------------HHHHHH
Q psy6046         133 LDGIEI----RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSE--------------TFRNIS  179 (379)
Q Consensus       133 ~~~~~~----~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~--------------~~~~i~  179 (379)
                      ......    ....++..|+||               |+|+++|+|++|..||.......              ......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (284)
T cd05038         160 PEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELL  239 (284)
T ss_pred             ccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHH
Confidence            532211    112344567888               99999999999999986532211              111222


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ......+.  ...++.++.+++.+||..+|++|||+.++++
T Consensus       240 ~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         240 KEGERLPR--PPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             HcCCcCCC--CccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            22222222  2356789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG1151|consensus

Probab=99.95  E-value=1.6e-28  Score=228.14  Aligned_cols=213  Identities=23%  Similarity=0.292  Sum_probs=167.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----------chHHHHHHHHHHhCCCCCcceeeeecC----cceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----------GVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----------~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~   74 (379)
                      ++||+|||+.||+|-+....+.|| +|+.....          .....+|.+|.+.|+||.||++|+++.    .+|-|+
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvA-vKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVL  547 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVA-VKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVL  547 (775)
T ss_pred             HHhccccHHHHHHhcccchhheee-EeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeee
Confidence            489999999999999887765444 77654311          234889999999999999999999864    389999


Q ss_pred             eC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      || .|.-.+.                     .|+.||..    .+--|||-||||.|||+.+...-|.+||+|||+++.+
T Consensus       548 EYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNE----ikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIM  623 (775)
T KOG1151|consen  548 EYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNE----IKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIM  623 (775)
T ss_pred             eecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc----cCCCeeeeccCCccEEEecCcccceeEeeecchhhhc
Confidence            99 3322222                     56667665    2456999999999999988755688999999999988


Q ss_pred             ccCcc--------ccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCC-ChHHHHHH---HHhC
Q psy6046         133 LDGIE--------IRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGE-TDSETFRN---ISKA  181 (379)
Q Consensus       133 ~~~~~--------~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~-~~~~~~~~---i~~~  181 (379)
                      .++..        .....||.||.+|                   |+|||+|.++.|+-||... +..++++.   +...
T Consensus       624 dddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAt  703 (775)
T KOG1151|consen  624 DDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKAT  703 (775)
T ss_pred             cCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcce
Confidence            65432        2346799999999                   9999999999999999754 33444432   3344


Q ss_pred             CCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         182 QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       182 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+.||+.  +.+|+++++||++||++.-++|....++-.||||...-
T Consensus       704 EVqFP~K--PvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllPh~  748 (775)
T KOG1151|consen  704 EVQFPPK--PVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLPHI  748 (775)
T ss_pred             eccCCCC--CccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccchh
Confidence            5666654  47899999999999999999999999999999998643

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=3.9e-27  Score=212.16  Aligned_cols=199  Identities=34%  Similarity=0.482  Sum_probs=161.7

Q ss_pred             CceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH--
Q psy6046          15 ARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA--   83 (379)
Q Consensus        15 ~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~--   83 (379)
                      +||.||+|.+..+|+.+|+ |......    ...+.+|++.++.++||||+++++.+..   .++++|+  ++++...  
T Consensus         1 ~~g~v~~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAI-KVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEE-EEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            6899999999988988884 5444322    4679999999999999999999887653   7899999  4355544  


Q ss_pred             ------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCC
Q psy6046          84 ------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTP  145 (379)
Q Consensus        84 ------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~  145 (379)
                                        .++.+||.      .|++|+||+|+||++++.   +.++|+|||.+.............++.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~h~~i~~~ni~~~~~---~~~~l~d~~~~~~~~~~~~~~~~~~~~  150 (244)
T smart00220       80 KRGRLSEDEARFYARQILSALEYLHS------NGIIHRDLKPENILLDED---GHVKLADFGLARQLDPGGLLTTFVGTP  150 (244)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHH------cCeecCCcCHHHeEECCC---CcEEEccccceeeeccccccccccCCc
Confidence                              56777777      999999999999999985   899999999998876554455667888


Q ss_pred             CCcch---------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCC
Q psy6046         146 DYVGK---------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP  209 (379)
Q Consensus       146 ~y~aP---------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  209 (379)
                      .|+||               |+|+++++|++|..||.. .........+.......... ...++.++.+++.+||..+|
T Consensus       151 ~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~p  229 (244)
T smart00220      151 EYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPP-EWKISPEAKDLIRKLLVKDP  229 (244)
T ss_pred             CCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccc-cccCCHHHHHHHHHHccCCc
Confidence            89998               999999999999999987 55555666665554443221 12278999999999999999


Q ss_pred             CCCCCHHHHhcCccc
Q psy6046         210 MERMTAKEALKHPWL  224 (379)
Q Consensus       210 ~~Rpt~~e~l~hp~~  224 (379)
                      ++||++.++++||||
T Consensus       230 ~~Rp~~~~~~~~~~~  244 (244)
T smart00220      230 EKRLTAEEALQHPFF  244 (244)
T ss_pred             hhccCHHHHhhCCCC
Confidence            999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=2.2e-27  Score=234.94  Aligned_cols=207  Identities=20%  Similarity=0.227  Sum_probs=141.6

Q ss_pred             cCcCCCCceEEEEEEEcC----------------CCcEEEEEEeccccc----------------chHHHHHHHHHHhCC
Q psy6046           9 HVGGNRARSSCSRKPEKT----------------TKREVVQWKERNVSQ----------------GVVIVDEEQLLKLIK   56 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~----------------tg~~~a~~k~~~~~~----------------~~~~~~E~~il~~l~   56 (379)
                      +.||+|+||+||+|....                .++.||++++.....                .+....|+.++..++
T Consensus       151 ~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l~  230 (507)
T PLN03224        151 DKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKIK  230 (507)
T ss_pred             eEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHhh
Confidence            489999999999997532                234566444322111                122345777888887


Q ss_pred             CCCc-----ceeeeecC-----------cceEEeeC--CchhhHH-----------------------------------
Q psy6046          57 VEPI-----EKYYSLDP-----------EPLLGLNP--RPPVYQA-----------------------------------   83 (379)
Q Consensus        57 hpnI-----v~~~~~~~-----------~~~~v~e~--~g~l~~~-----------------------------------   83 (379)
                      |.++     +++++++.           +.|+|+||  +|+|.+.                                   
T Consensus       231 ~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~  310 (507)
T PLN03224        231 RNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINV  310 (507)
T ss_pred             cccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHH
Confidence            7654     44544432           36899999  4444221                                   


Q ss_pred             ---------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc--ccCCCCcch--
Q psy6046          84 ---------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL--LGTPDYVGK--  150 (379)
Q Consensus        84 ---------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~--~gt~~y~aP--  150 (379)
                               .++.|+|.      .+|+||||||+||+++.+   +.+||+|||++............  .+|+.|+||  
T Consensus       311 ~~~i~~ql~~aL~~lH~------~~ivHrDLKp~NILl~~~---~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~  381 (507)
T PLN03224        311 IKGVMRQVLTGLRKLHR------IGIVHRDIKPENLLVTVD---GQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEE  381 (507)
T ss_pred             HHHHHHHHHHHHHHHHH------CCeecCCCchHhEEECCC---CcEEEEeCcCccccccCCccCccccCCCcceeChhh
Confidence                     35666666      999999999999999986   78999999999765433222222  236677777  


Q ss_pred             -----------------------------------HHHHHHHHHhhCCC-CCCCCCh-----------HHHHHHHHhCCC
Q psy6046         151 -----------------------------------SLGVTAYVLLTGFS-PFGGETD-----------SETFRNISKAQL  183 (379)
Q Consensus       151 -----------------------------------SlGvil~~lltg~~-Pf~~~~~-----------~~~~~~i~~~~~  183 (379)
                                                         |+||++|+|++|.. ||.+...           ......+....+
T Consensus       382 l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~  461 (507)
T PLN03224        382 LVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKY  461 (507)
T ss_pred             hcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCC
Confidence                                               78999999999986 7753211           111222233344


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCC---CCCCCHHHHhcCccccC
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNP---MERMTAKEALKHPWLMN  226 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP---~~Rpt~~e~l~hp~~~~  226 (379)
                      .++  .++..++.++||+.+||..+|   .+|+|++|+|+||||..
T Consensus       462 ~~~--~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        462 DFS--LLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             Ccc--cccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            443  456789999999999999876   68999999999999964

>KOG0670|consensus

Probab=99.95  E-value=4.9e-29  Score=235.34  Aligned_cols=207  Identities=24%  Similarity=0.358  Sum_probs=159.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccc--hHHHHHHHHHHhCCC------CCcceeeeecC---cceEEeeC--
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQG--VVIVDEEQLLKLIKV------EPIEKYYSLDP---EPLLGLNP--   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~--~~~~~E~~il~~l~h------pnIv~~~~~~~---~~~~v~e~--   76 (379)
                      ..|+|-|+.|.+|.+...|..|| +|++...+.  ..=++|++||++|+.      -|+++++..|.   .+|+|+|-  
T Consensus       439 ~~GkGvFs~Vvra~D~~r~~~vA-iKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls  517 (752)
T KOG0670|consen  439 YTGKGVFSTVVRARDQARGQEVA-IKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS  517 (752)
T ss_pred             ccccceeeeeeeccccCCCCeeE-EEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh
Confidence            57999999999999999999888 677665443  346889999999983      34677666544   48999987  


Q ss_pred             ---C----------c-hh-----hHH---HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 ---R----------P-PV-----YQA---SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ---~----------g-~l-----~~~---~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                         +          | .+     |..   .||..|..      .||+|.||||+|||++..  ...+||||||.|.....
T Consensus       518 lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~------c~vlHaDIKPDNiLVNE~--k~iLKLCDfGSA~~~~e  589 (752)
T KOG0670|consen  518 LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK------CGVLHADIKPDNILVNES--KNILKLCDFGSASFASE  589 (752)
T ss_pred             chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh------cCeeecccCccceEeccC--cceeeeccCcccccccc
Confidence               1          1 11     111   67777777      999999999999999986  57899999999987655


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc---------
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF---------  190 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~---------  190 (379)
                      + ..+.+.-+..|.||               |.||++|||.||+..|+|.+..+++.........||..+.         
T Consensus       590 n-eitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqH  668 (752)
T KOG0670|consen  590 N-EITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQH  668 (752)
T ss_pred             c-cccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhh
Confidence            5 45666777889999               9999999999999999998887777665443333331000         


Q ss_pred             ----------------------------------------cCC-------CHHHHHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         191 ----------------------------------------EDI-------SPEAKDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       191 ----------------------------------------~~~-------s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                                                              +.+       -..+++||.+||.+||++|.|+.++|.|||
T Consensus       669 FD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpF  748 (752)
T KOG0670|consen  669 FDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPF  748 (752)
T ss_pred             cccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCc
Confidence                                                    001       234789999999999999999999999999


Q ss_pred             ccC
Q psy6046         224 LMN  226 (379)
Q Consensus       224 ~~~  226 (379)
                      |..
T Consensus       749 i~~  751 (752)
T KOG0670|consen  749 ITE  751 (752)
T ss_pred             ccC
Confidence            964

>KOG0695|consensus

Probab=99.95  E-value=8.2e-28  Score=216.60  Aligned_cols=215  Identities=18%  Similarity=0.194  Sum_probs=174.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .|||+|+|.+|-+++++.|.+.||+ |+...      .+..=+..|-.+...- +||.+|-+...++.   ++.|.||  
T Consensus       256 ~vigrgsyakvl~~~~~~t~qiyam-kvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv~  334 (593)
T KOG0695|consen  256 RVIGRGSYAKVLLVRLKKTDQIYAM-KVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVN  334 (593)
T ss_pred             eeecCcchhhhhheehcccceeeeh-hhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEec
Confidence            3899999999999999999999984 33322      2223356666666555 49999999888775   7888999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee-ccC
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI-LDG  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~-~~~  135 (379)
                      +|+|.-.                    .|+.|||.      +||++||||.+|+|++.+   +.+||+|+|+++.- .++
T Consensus       335 ggdlmfhmqrqrklpeeharfys~ei~lal~flh~------rgiiyrdlkldnvlldae---ghikltdygmcke~l~~g  405 (593)
T KOG0695|consen  335 GGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHE------RGIIYRDLKLDNVLLDAE---GHIKLTDYGMCKEGLGPG  405 (593)
T ss_pred             CcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhh------cCeeeeeccccceEEccC---CceeecccchhhcCCCCC
Confidence            5554322                    67889998      999999999999999997   99999999999864 455


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC--------CChHHHHHHHHhCCCCCCcccccC
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG--------ETDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~--------~~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      ....++||||.|+||               +||++++||+.|+.||.-        ++..-+++-|....+..|..    
T Consensus       406 d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprs----  481 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRS----  481 (593)
T ss_pred             cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccce----
Confidence            567889999999999               999999999999999951        22344566677777777764    


Q ss_pred             CCHHHHHHHHHhcccCCCCCC------CHHHHhcCccccCCcccccccCCC
Q psy6046         193 ISPEAKDFIAKILIKNPMERM------TAKEALKHPWLMNKKQIMTRVGCS  237 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rp------t~~e~l~hp~~~~~~~~~~~~~~~  237 (379)
                      +|-.+..+++..|.+||++|.      .+.++..|+||+...|...+....
T Consensus       482 lsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v  532 (593)
T KOG0695|consen  482 LSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQV  532 (593)
T ss_pred             eehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhccc
Confidence            788899999999999999998      478999999999999887655433

>KOG0196|consensus

Probab=99.95  E-value=2.5e-28  Score=240.08  Aligned_cols=211  Identities=16%  Similarity=0.206  Sum_probs=175.7

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcE--EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKRE--VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~--~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.++|||.|.||+||+|+.+..|+.  .|++|.+..    +++..|+.|+.||-+++||||+++-+++..   ..++.||
T Consensus       632 ~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEy  711 (996)
T KOG0196|consen  632 KIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEY  711 (996)
T ss_pred             EEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhh
Confidence            4455999999999999999888864  345777654    445679999999999999999999999876   7888999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        .|.|-..                     .++.||..      +|+|||||-..|||+++.   -.+|++|||+++.+.
T Consensus       712 MENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsd------m~YVHRDLAARNILVNsn---LvCKVsDFGLSRvle  782 (996)
T KOG0196|consen  712 MENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSD------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRVLE  782 (996)
T ss_pred             hhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhh------cCchhhhhhhhheeeccc---eEEEeccccceeecc
Confidence              7777666                     67999999      999999999999999984   899999999999887


Q ss_pred             cCcc-cccccc---CCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         134 DGIE-IRELLG---TPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       134 ~~~~-~~~~~g---t~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ++.. ..+..|   ...|.||               |+||++||.++ |..||...+.++++..|..+ +.+|+++  ++
T Consensus       783 dd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~g-yRLPpPm--DC  859 (996)
T KOG0196|consen  783 DDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQG-YRLPPPM--DC  859 (996)
T ss_pred             cCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhc-cCCCCCC--CC
Confidence            6652 222222   2479999               99999999876 99999999999999999887 4455543  79


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcC--ccccCCc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKH--PWLMNKK  228 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~h--p~~~~~~  228 (379)
                      |..+..|+.-||++|-..||++.|++.+  ..+++..
T Consensus       860 P~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~  896 (996)
T KOG0196|consen  860 PAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPN  896 (996)
T ss_pred             cHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCch
Confidence            9999999999999999999999999873  4665543

>KOG0199|consensus

Probab=99.95  E-value=1.2e-27  Score=232.77  Aligned_cols=208  Identities=16%  Similarity=0.205  Sum_probs=171.3

Q ss_pred             ccCcCCCCceEEEEEEEcCC-CcEE-EEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-KREV-VQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-g~~~-a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      .++||+|+||+|++|.+... |+.| |++|+....    ....|++|+.+|.+|+|||++++|+++.+  ..+|+|+  .
T Consensus       115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELapl  194 (1039)
T KOG0199|consen  115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPL  194 (1039)
T ss_pred             HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhccc
Confidence            34899999999999987654 4543 458887653    24579999999999999999999999875  7899999  7


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|.+.                      .|++||..      +++|||||-..|+|+-..   -.|||||||+.+.+..+
T Consensus       195 GSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLes------krlvHRDLAARNlllasp---rtVKI~DFGLmRaLg~n  265 (1039)
T KOG0199|consen  195 GSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLES------KRLVHRDLAARNLLLASP---RTVKICDFGLMRALGEN  265 (1039)
T ss_pred             chHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhh------hhhhhhhhhhhhheeccc---ceeeeecccceeccCCC
Confidence            887776                      67889888      999999999999999985   78999999999988766


Q ss_pred             cccccccc----CCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IEIRELLG----TPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~~~~~~g----t~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      +....+.+    ...|+||               ++||++|||++ |.-||.|.....++++|..+. .++.+  +.+|+
T Consensus       266 ed~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~e-rLpRP--k~cse  342 (1039)
T KOG0199|consen  266 EDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGE-RLPRP--KYCSE  342 (1039)
T ss_pred             CcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccc-cCCCC--CCChH
Confidence            54333222    3368999               99999999998 899999999999999998654 33322  36899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ++.+++..||..+|++|||+..+.+.-+....
T Consensus       343 dIY~imk~cWah~paDRptFsair~~~~l~ea  374 (1039)
T KOG0199|consen  343 DIYQIMKNCWAHNPADRPTFSAIREDLVLAEA  374 (1039)
T ss_pred             HHHHHHHHhccCCccccccHHHHHHhHHHHhc
Confidence            99999999999999999999999766555443

>KOG0576|consensus

Probab=99.94  E-value=8.6e-28  Score=232.84  Aligned_cols=209  Identities=20%  Similarity=0.215  Sum_probs=173.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc---cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN---VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~---~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .++|+|+||.||+|+++.+++..| +|..+   ..+..-+.+|+-+++..+|||||.|++.+..   ++++|||  +|++
T Consensus        21 qrvgsgTygdvyKaRd~~s~elaa-vkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggsl   99 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRSGELAA-VKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSL   99 (829)
T ss_pred             eeecCCcccchhhhcccccCchhh-heeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcc
Confidence            489999999999999999998776 44444   3555668899999999999999999997653   8999999  5666


Q ss_pred             hHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          81 YQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        81 ~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      .+.                    .++.|||+      .|-+|||||-.||++++.   +.+|++|||.+..+...- ...
T Consensus       100 Qdiy~~TgplselqiayvcRetl~gl~ylhs------~gk~hRdiKGanilltd~---gDvklaDfgvsaqitati~Krk  170 (829)
T KOG0576|consen  100 QDIYHVTGPLSELQIAYVCRETLQGLKYLHS------QGKIHRDIKGANILLTDE---GDVKLADFGVSAQITATIAKRK  170 (829)
T ss_pred             cceeeecccchhHHHHHHHhhhhccchhhhc------CCcccccccccceeeccc---CceeecccCchhhhhhhhhhhh
Confidence            555                    45667776      999999999999999996   999999999998765432 345


Q ss_pred             ccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-ccccCCCHHHHHH
Q psy6046         140 ELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-ELFEDISPEAKDF  200 (379)
Q Consensus       140 ~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~l  200 (379)
                      ++.|||+||||                  ++|+...|+..-++|-....+...+....+..+..|. .....+++.+.+|
T Consensus       171 sfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~f  250 (829)
T KOG0576|consen  171 SFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNF  250 (829)
T ss_pred             cccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHH
Confidence            68999999999                  9999999999999998877777666666665555442 2224689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ++.+|..+|++|||++.+|.|||+...
T Consensus       251 vK~altknpKkRptaeklL~h~fvs~~  277 (829)
T KOG0576|consen  251 VKGALTKNPKKRPTAEKLLQHPFVSQT  277 (829)
T ss_pred             HHHHhcCCCccCCChhhheeceeeccc
Confidence            999999999999999999999999764

>KOG4278|consensus

Probab=99.94  E-value=2.5e-26  Score=220.93  Aligned_cols=200  Identities=18%  Similarity=0.175  Sum_probs=168.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ..++-||-|.||.||.|.++.-.-.|| +|.+..  -+.+.++.|+.+|+.+.|||+|++.++|..   +||+.||  -|
T Consensus       270 tMkhKLGGGQYGeVYeGvWKkyslTvA-VKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yG  348 (1157)
T KOG4278|consen  270 TMKHKLGGGQYGEVYEGVWKKYSLTVA-VKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYG  348 (1157)
T ss_pred             eeeeccCCCcccceeeeeeeccceeee-hhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCc
Confidence            455689999999999999888776677 565544  446789999999999999999999999876   8999999  78


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .|.++                      +|+.||..      +++|||||-..|+|+...   ..+|++|||+++.+..+.
T Consensus       349 NLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEk------knFIHRDLAARNCLVgEn---hiVKvADFGLsRlMtgDT  419 (1157)
T KOG4278|consen  349 NLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEK------KNFIHRDLAARNCLVGEN---HIVKVADFGLSRLMTGDT  419 (1157)
T ss_pred             cHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHH------hhhhhhhhhhhhcccccc---ceEEeeccchhhhhcCCc
Confidence            88887                      67899998      999999999999999984   889999999999886654


Q ss_pred             ccccccc---CCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLG---TPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~g---t~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      . +...|   ...|.||               ++||++||+.| |-.||+|-+..+++..+.++. ....+  ..|++..
T Consensus       420 Y-TAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgy-RM~~P--eGCPpkV  495 (1157)
T KOG4278|consen  420 Y-TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGY-RMDGP--EGCPPKV  495 (1157)
T ss_pred             e-ecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccc-cccCC--CCCCHHH
Confidence            3 22233   3368888               99999999998 899999999888888777653 33322  3799999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHh
Q psy6046         198 KDFIAKILIKNPMERMTAKEAL  219 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l  219 (379)
                      .+|++.||.++|++||++.|+-
T Consensus       496 YeLMraCW~WsPsDRPsFaeiH  517 (1157)
T KOG4278|consen  496 YELMRACWNWSPSDRPSFAEIH  517 (1157)
T ss_pred             HHHHHHHhcCCcccCccHHHHH
Confidence            9999999999999999998874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1e-25  Score=243.23  Aligned_cols=201  Identities=15%  Similarity=0.110  Sum_probs=141.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~   83 (379)
                      .+||+|+||.||+|++..+|..||+++......  ....|+.+++.++|||||++++++.+   .|++|||  +|+|.+.
T Consensus       696 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~  773 (968)
T PLN00113        696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVNS--IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEV  773 (968)
T ss_pred             cEEccCCCeeEEEEEECCCCcEEEEEEccCCcc--ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHH
Confidence            389999999999999999998888554433222  23467999999999999999999764   8999999  7777665


Q ss_pred             -----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCC
Q psy6046          84 -----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPD  146 (379)
Q Consensus        84 -----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~  146 (379)
                                       .|++|||.   .++.+|+||||||+||+++.+   +..++. ||.......   .....||+.
T Consensus       774 l~~l~~~~~~~i~~~ia~~L~yLH~---~~~~~iiH~dlkp~Nil~~~~---~~~~~~-~~~~~~~~~---~~~~~~t~~  843 (968)
T PLN00113        774 LRNLSWERRRKIAIGIAKALRFLHC---RCSPAVVVGNLSPEKIIIDGK---DEPHLR-LSLPGLLCT---DTKCFISSA  843 (968)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcc---CCCCCeecCCCCHHhEEECCC---CceEEE-ecccccccc---CCCcccccc
Confidence                             56777773   014799999999999999875   556654 555543221   123468899


Q ss_pred             Ccch---------------HHHHHHHHHhhCCCCCCCCC-----hHHHHHHHHhC-C------CCCCc--ccccCCCHHH
Q psy6046         147 YVGK---------------SLGVTAYVLLTGFSPFGGET-----DSETFRNISKA-Q------LDFPD--ELFEDISPEA  197 (379)
Q Consensus       147 y~aP---------------SlGvil~~lltg~~Pf~~~~-----~~~~~~~i~~~-~------~~~~~--~~~~~~s~~~  197 (379)
                      |+||               |+||++|||+||+.||....     ..+........ .      .....  ........++
T Consensus       844 y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  923 (968)
T PLN00113        844 YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEV  923 (968)
T ss_pred             ccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHH
Confidence            9999               99999999999999985321     11111111000 0      00000  0000112356


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+++.+||..||++|||+.|+++.
T Consensus       924 ~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        924 MNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             HHHHHhhCcCCchhCcCHHHHHHH
Confidence            789999999999999999999873

>KOG3653|consensus

Probab=99.93  E-value=9.8e-26  Score=211.36  Aligned_cols=203  Identities=16%  Similarity=0.133  Sum_probs=157.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC--CCCCcceeeeecC-------cceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI--KVEPIEKYYSLDP-------EPLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l--~hpnIv~~~~~~~-------~~~~v~e~--~   77 (379)
                      ++||+|.||.||+|+  .+++.|| +|+....+.+.+..|-+|.+..  +|+||++++..-.       ++++|++|  .
T Consensus       216 eli~~Grfg~V~Kaq--L~~~~VA-VKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~k  292 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQ--LDNRLVA-VKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPK  292 (534)
T ss_pred             HHhhcCccceeehhh--ccCceeE-EEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccC
Confidence            489999999999998  4456666 8999998889999888887754  5999999998732       59999999  8


Q ss_pred             chhhHH-------------------HHHHHHhcccC---CCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA-------------------SATTKAGSVLF---PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~---~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|.++                   .+++|||.-.-   -|+..|+|||||..|||+.++   .+..|+|||+|..+..+
T Consensus       293 GsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~D---lTccIaDFGLAl~~~p~  369 (534)
T KOG3653|consen  293 GSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKND---LTCCIADFGLALRLEPG  369 (534)
T ss_pred             CcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccC---CcEEeeccceeEEecCC
Confidence            999998                   67999997433   678889999999999999997   99999999999888654


Q ss_pred             cc---ccccccCCCCcch---------------------HHHHHHHHHhhCC------------CCCC-----CCChHHH
Q psy6046         136 IE---IRELLGTPDYVGK---------------------SLGVTAYVLLTGF------------SPFG-----GETDSET  174 (379)
Q Consensus       136 ~~---~~~~~gt~~y~aP---------------------SlGvil~~lltg~------------~Pf~-----~~~~~~~  174 (379)
                      ..   ....+||..||||                     |+|.+++||++..            +||.     ..+.+++
T Consensus       370 ~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~m  449 (534)
T KOG3653|consen  370 KPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEM  449 (534)
T ss_pred             CCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHH
Confidence            32   3347899999999                     9999999998753            2342     1233344


Q ss_pred             HHHHHh--CCCCCCcccccC-CCHHHHHHHHHhcccCCCCCCCHHH
Q psy6046         175 FRNISK--AQLDFPDELFED-ISPEAKDFIAKILIKNPMERMTAKE  217 (379)
Q Consensus       175 ~~~i~~--~~~~~~~~~~~~-~s~~~~~li~~~L~~dP~~Rpt~~e  217 (379)
                      ...+.+  ....+|...... -...+++.+.-||..||+.|.|+.=
T Consensus       450 q~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~C  495 (534)
T KOG3653|consen  450 QELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGC  495 (534)
T ss_pred             HHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHH
Confidence            444433  233334322122 2355789999999999999999753

>KOG2052|consensus

Probab=99.93  E-value=3.4e-25  Score=206.39  Aligned_cols=206  Identities=14%  Similarity=0.135  Sum_probs=155.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHH--hCCCCCcceeeeecC-------cceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLK--LIKVEPIEKYYSLDP-------EPLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~--~l~hpnIv~~~~~~~-------~~~~v~e~--~   77 (379)
                      +.||+|.||+||+|.  ..|+.|| +|+....+.....+|.+|.+  .|+|+||..++....       .+|++.+|  .
T Consensus       217 e~IGkGRyGEVwrG~--wrGe~VA-VKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~  293 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGR--WRGEDVA-VKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEH  293 (513)
T ss_pred             EEecCccccceeecc--ccCCceE-EEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccC
Confidence            589999999999998  5677777 89988888888888888876  578999999998643       48999999  8


Q ss_pred             chhhHH-------------------HHHHHHhcccC--CCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA-------------------SATTKAGSVLF--PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~~~--~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+||++                   .++..||.-.+  .-+-.|.|||||..|||+...   +.+.|+|+|+|-......
T Consensus       294 GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn---~~C~IADLGLAv~h~~~t  370 (513)
T KOG2052|consen  294 GSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN---GTCCIADLGLAVRHDSDT  370 (513)
T ss_pred             CcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccC---CcEEEeeceeeEEecccC
Confidence            999999                   56777775322  124469999999999999984   999999999998765442


Q ss_pred             -----cccccccCCCCcch---------------------HHHHHHHHHhhC----------CCCCCCC----ChHHHHH
Q psy6046         137 -----EIRELLGTPDYVGK---------------------SLGVTAYVLLTG----------FSPFGGE----TDSETFR  176 (379)
Q Consensus       137 -----~~~~~~gt~~y~aP---------------------SlGvil~~lltg----------~~Pf~~~----~~~~~~~  176 (379)
                           ..+..+||..||||                     |+|.++||++..          ++||.+-    ...+.+.
T Consensus       371 ~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMr  450 (513)
T KOG2052|consen  371 DTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMR  450 (513)
T ss_pred             CcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHh
Confidence                 35668999999999                     999999999863          5788642    2223333


Q ss_pred             HHH-hCCCC-CCcccccCCC--HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         177 NIS-KAQLD-FPDELFEDIS--PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       177 ~i~-~~~~~-~~~~~~~~~s--~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++. -.++. ..+..|...+  ..+..+|+.||..+|+-|.||-.+.+
T Consensus       451 kVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKK  498 (513)
T KOG2052|consen  451 KVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKK  498 (513)
T ss_pred             cceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHH
Confidence            332 22221 1223333321  33567899999999999999876644

>KOG0984|consensus

Probab=99.92  E-value=1.4e-25  Score=190.02  Aligned_cols=172  Identities=16%  Similarity=0.212  Sum_probs=132.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc---cccchHHHHHHHH-HHhCCCCCcceeeeecC---cceEEeeC-C---
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN---VSQGVVIVDEEQL-LKLIKVEPIEKYYSLDP---EPLLGLNP-R---   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~---~~~~~~~~~E~~i-l~~l~hpnIv~~~~~~~---~~~~v~e~-~---   77 (379)
                      +-||+|+||.|-+.++..+|...|++.+..   ..+..++++|+.+ ++...+|.+|.+|+...   +.++.||+ .   
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~tSl  131 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDTSL  131 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhhhH
Confidence            469999999999999999999998644432   2445668889886 55566999999999754   38999998 1   


Q ss_pred             chhhHH---------------HHHHHHhcccCCC-CCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc
Q psy6046          78 PPVYQA---------------SATTKAGSVLFPP-LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL  141 (379)
Q Consensus        78 g~l~~~---------------~al~~lh~~~~~h-~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~  141 (379)
                      ..+|..               .|+..+|.+.++| +..++|||+||+|||++.+   |.+|+||||++..+.++-..+-.
T Consensus       132 dkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~---GqVKiCDFGIsG~L~dSiAkt~d  208 (282)
T KOG0984|consen  132 DKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYD---GQVKICDFGISGYLVDSIAKTMD  208 (282)
T ss_pred             HHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccC---CcEEEcccccceeehhhhHHHHh
Confidence            112221               4444444444444 5789999999999999997   99999999999887655433436


Q ss_pred             ccCCCCcch-------------------HHHHHHHHHhhCCCCCC-CCChHHHHHHHHhCCC
Q psy6046         142 LGTPDYVGK-------------------SLGVTAYVLLTGFSPFG-GETDSETFRNISKAQL  183 (379)
Q Consensus       142 ~gt~~y~aP-------------------SlGvil~~lltg~~Pf~-~~~~~~~~~~i~~~~~  183 (379)
                      .|-..||||                   |||+++.||.+++.||. ..++.+++.++...+.
T Consensus       209 aGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVeep~  270 (282)
T KOG0984|consen  209 AGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPS  270 (282)
T ss_pred             cCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcCCC
Confidence            677899999                   99999999999999996 4678888888877653

>KOG1094|consensus

Probab=99.92  E-value=1.1e-24  Score=208.46  Aligned_cols=203  Identities=15%  Similarity=0.103  Sum_probs=158.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecC---cceEEeeC--C
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDP---EPLLGLNP--R   77 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~---~~~~v~e~--~   77 (379)
                      .++-||+|-||.|-+|.-. .+..|| +|.....    .+..+.+|+++|.+|+|||||.+++++.   .+|+++||  .
T Consensus       542 ~~ekiGeGqFGEVhLCeve-g~lkVA-VK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEn  619 (807)
T KOG1094|consen  542 FKEKIGEGQFGEVHLCEVE-GPLKVA-VKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMEN  619 (807)
T ss_pred             hhhhhcCcccceeEEEEec-CceEEE-EeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhc
Confidence            4568999999999999822 235566 5655542    2456999999999999999999999954   38999999  6


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|-++                      .++.||.+      .++|||||-+.|+|++.+   +++||+|||+++.+..+
T Consensus       620 GDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes------~nfVHrd~a~rNcLv~~e---~~iKiadfgmsR~lysg  690 (807)
T KOG1094|consen  620 GDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES------LNFVHRDLATRNCLVDGE---FTIKIADFGMSRNLYSG  690 (807)
T ss_pred             CcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh------hchhhccccccceeecCc---ccEEecCcccccccccC
Confidence            666655                      67999999      999999999999999985   99999999999976555


Q ss_pred             cccc---ccccCCCCcch---------------HHHHHHHHHh--hCCCCCCCCChHHHHHHHHhCCC----CCCccccc
Q psy6046         136 IEIR---ELLGTPDYVGK---------------SLGVTAYVLL--TGFSPFGGETDSETFRNISKAQL----DFPDELFE  191 (379)
Q Consensus       136 ~~~~---~~~gt~~y~aP---------------SlGvil~~ll--tg~~Pf~~~~~~~~~~~i~~~~~----~~~~~~~~  191 (379)
                      ....   ..+-...|||+               ++|+++||++  +...||...+.++...+...-..    ..-...++
T Consensus       691 ~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~  770 (807)
T KOG1094|consen  691 DYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPP  770 (807)
T ss_pred             CceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCC
Confidence            4322   23445689999               9999999985  58899998888777665433211    11112334


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      -++..+.++|.+||..|.++|||++++-.
T Consensus       771 ~cp~~lyelml~Cw~~es~~RPsFe~lh~  799 (807)
T KOG1094|consen  771 ACPQGLYELMLRCWRRESEQRPSFEQLHL  799 (807)
T ss_pred             cCcHHHHHHHHHHhchhhhcCCCHHHHHH
Confidence            68899999999999999999999999854

>KOG1167|consensus

Probab=99.91  E-value=5.3e-25  Score=204.18  Aligned_cols=212  Identities=22%  Similarity=0.237  Sum_probs=153.9

Q ss_pred             cCcCCCCceEEEEEEEcC---CCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--C--
Q psy6046           9 HVGGNRARSSCSRKPEKT---TKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--R--   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~---tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~--   77 (379)
                      +.||.|+|++||+|.+..   ..+.||++++.....-.++..|+++|..+. +.||+++.+.+..   .++++||  .  
T Consensus        42 ~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~  121 (418)
T KOG1167|consen   42 NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDR  121 (418)
T ss_pred             ccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccC
Confidence            389999999999999887   566677666666677788999999999998 8999999887653   7899999  1  


Q ss_pred             -chhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec---------
Q psy6046          78 -PPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL---------  133 (379)
Q Consensus        78 -g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~---------  133 (379)
                       -+++..              .|+.++|.      .|||||||||+|+|++..  .+.-.|+|||+|....         
T Consensus       122 f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~------~GIvHRDiKpsNFL~n~~--t~rg~LvDFgLA~~~d~~~~~~~s~  193 (418)
T KOG1167|consen  122 FRDLYRSLSLAEIRWYLRNLLKALAHLHK------NGIVHRDIKPSNFLYNRR--TQRGVLVDFGLAQRYDGYQQTEHSR  193 (418)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhhc------cCccccCCCccccccccc--cCCceEEechhHHHHHhhhhhhhhh
Confidence             111111              45555555      999999999999999987  5778999999997210         


Q ss_pred             --------c--C--------------------------ccccccccCCCCcch----------------HHHHHHHHHhh
Q psy6046         134 --------D--G--------------------------IEIRELLGTPDYVGK----------------SLGVTAYVLLT  161 (379)
Q Consensus       134 --------~--~--------------------------~~~~~~~gt~~y~aP----------------SlGvil~~llt  161 (379)
                              .  +                          ..-....||++|.||                |.|+|+..+++
T Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls  273 (418)
T KOG1167|consen  194 SYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLS  273 (418)
T ss_pred             hhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhc
Confidence                    0  0                          000124699999999                99999999999


Q ss_pred             CCCCCCCCC-hHHHHHHH--------------HhCC--C-----------------CC--------------CcccccCC
Q psy6046         162 GFSPFGGET-DSETFRNI--------------SKAQ--L-----------------DF--------------PDELFEDI  193 (379)
Q Consensus       162 g~~Pf~~~~-~~~~~~~i--------------~~~~--~-----------------~~--------------~~~~~~~~  193 (379)
                      +..||.-.. +...+..|              .-|.  +                 ..              ........
T Consensus       274 ~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~  353 (418)
T KOG1167|consen  274 RRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVF  353 (418)
T ss_pred             cccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccc
Confidence            999995322 11111110              0011  0                 00              00111234


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +..+.||+.+||..||.+|+|++++|.||||....
T Consensus       354 ~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  354 PALLLDLLDKCLELNPQKRITAEDALKHPFFDEAD  388 (418)
T ss_pred             cHHHHHHHHHHccCChhhcccHHHHhcCcCCcchh
Confidence            66899999999999999999999999999997543

>KOG1025|consensus

Probab=99.90  E-value=2.1e-23  Score=206.38  Aligned_cols=199  Identities=16%  Similarity=0.132  Sum_probs=161.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEE---EEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREV---VQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      +||+|+||+||+|..-..|+.|   |++|+...    +....++.|+-+|..|+|||++++.+++..  +.++++|  .|
T Consensus       703 vLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP~G  782 (1177)
T KOG1025|consen  703 VLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMPLG  782 (1177)
T ss_pred             eeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcccc
Confidence            8999999999999987777664   33565543    334679999999999999999999999775  6778888  78


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      .|.++                     +|+.|||.      +.++||||-..|+|+.+-   ..+||.|||+++.......
T Consensus       783 ~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~------qrlVHrdLaaRNVLVksP---~hvkitdfgla~ll~~d~~  853 (1177)
T KOG1025|consen  783 CLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEE------QRLVHRDLAARNVLVKSP---NHVKITDFGLAKLLAPDEK  853 (1177)
T ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh------cchhhhhhhhhheeecCC---CeEEEEecchhhccCcccc
Confidence            88877                     77889998      999999999999999986   7999999999998754432


Q ss_pred             -cccccc--CCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 -IRELLG--TPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 -~~~~~g--t~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                       .....|  ...|||-               |+||++||++| |..|+.+....++-..+..+.. ++.  ++.++-++-
T Consensus       854 ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geR-Lsq--PpiCtiDVy  930 (1177)
T KOG1025|consen  854 EYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGER-LSQ--PPICTIDVY  930 (1177)
T ss_pred             cccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhcccc-CCC--CCCccHHHH
Confidence             111111  2234443               99999999998 9999999999988888877654 222  246899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      -++.+||..|+..||+++++-.
T Consensus       931 ~~mvkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  931 MVMVKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             HHHHHHhccCcccCccHHHHHH
Confidence            9999999999999999988764

>KOG1290|consensus

Probab=99.89  E-value=7.4e-23  Score=192.65  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=83.0

Q ss_pred             CCCccC-cc-----CcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCC-----CC---Ccceeee
Q psy6046           2 ITDPMA-SH-----VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIK-----VE---PIEKYYS   65 (379)
Q Consensus         2 ~~d~~~-~~-----~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~-----hp---nIv~~~~   65 (379)
                      |.|+|. +.     -||-|.|++||+|.|..+.+.|| +|+....+  .+..+.||++|++++     |+   +||++++
T Consensus        71 IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VA-lKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD  149 (590)
T KOG1290|consen   71 IGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVA-LKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLD  149 (590)
T ss_pred             ccccccCceEEEEEeccccccceeEEEeeccCCeEEE-EEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeec
Confidence            446666 32     69999999999999998876666 77766533  467899999999997     33   3899998


Q ss_pred             ecCc-------ceEEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEe
Q psy6046          66 LDPE-------PLLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMM  113 (379)
Q Consensus        66 ~~~~-------~~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~  113 (379)
                      .|..       .|+|+|+ |-.|...                      .||.|||.     +.||||.||||+|||+.
T Consensus       150 ~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~-----ecgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  150 HFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHR-----ECGIIHTDLKPENVLLC  222 (590)
T ss_pred             cceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH-----hcCccccCCCcceeeee
Confidence            7653       8999999 4444444                      67888887     58999999999999986

>KOG0200|consensus

Probab=99.89  E-value=5.2e-22  Score=202.79  Aligned_cols=199  Identities=18%  Similarity=0.157  Sum_probs=154.7

Q ss_pred             CcCCCCceEEEEEEEcCC------CcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTT------KREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~t------g~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e   75 (379)
                      .||+|+||.|++|.-..-      ...-|++|....    .+...+..|+.+|+.+. ||||+.+.+.+..   ++++.|
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~E  382 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVE  382 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEE
Confidence            899999999999874311      133344555433    34567999999999998 9999999998876   899999


Q ss_pred             C--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC
Q psy6046          76 P--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP  117 (379)
Q Consensus        76 ~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~  117 (379)
                      |  .|.|..+                                    .++.||++      ..++||||-..|||+...  
T Consensus       383 y~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~------~~~vHRDLAaRNVLi~~~--  454 (609)
T KOG0200|consen  383 YAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS------VPCVHRDLAARNVLITKN--  454 (609)
T ss_pred             eccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh------CCccchhhhhhhEEecCC--
Confidence            9  3333222                                    56777777      999999999999999985  


Q ss_pred             CCcEEEeecccceeeccCcccc--ccccCC--CCcch---------------HHHHHHHHHhh-CCCCCCCCC-hHHHHH
Q psy6046         118 NCDIKVCDFEISRVILDGIEIR--ELLGTP--DYVGK---------------SLGVTAYVLLT-GFSPFGGET-DSETFR  176 (379)
Q Consensus       118 ~~~ikl~DFG~a~~~~~~~~~~--~~~gt~--~y~aP---------------SlGvil~~llt-g~~Pf~~~~-~~~~~~  176 (379)
                       ..+||+|||+|+.........  ...|+.  .||||               |+||++||+.+ |..||.+-. ..+++.
T Consensus       455 -~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~  533 (609)
T KOG0200|consen  455 -KVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLE  533 (609)
T ss_pred             -CEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHH
Confidence             799999999998755443322  222223  49999               99999999998 999999855 667777


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+..|.....+   ..+++++.++++.||..+|++||++.++.+
T Consensus       534 ~l~~G~r~~~P---~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  534 FLKEGNRMEQP---EHCSDEIYDLMKSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             HHhcCCCCCCC---CCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            77777543222   257999999999999999999999999977

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.88  E-value=1.1e-21  Score=171.99  Aligned_cols=167  Identities=28%  Similarity=0.380  Sum_probs=136.3

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      ||+|++|.||+|.+..+|+.++ +|......    ...+.+|+..++.+.|+++++++++...   .++++|+  ++++.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~-~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVA-IKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEE-EEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            7999999999999988888887 45554433    3679999999999999999999998775   7899999  34444


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee-cCCCCcEEEeecccceeeccCc-cc
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~-~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      +.                     .++.+||.      .|++|+||+|.||+++. .   +.++|+|||.+....... ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~~~H~dl~~~ni~~~~~~---~~~~l~d~~~~~~~~~~~~~~  150 (215)
T cd00180          80 DLLKENEGKLSEDEILRILLQILEGLEYLHS------NGIIHRDLKPENILLDSDN---GKVKLADFGLSKLLTSDKSLL  150 (215)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHhhEEEeCCC---CcEEEecCCceEEccCCcchh
Confidence            33                     45677777      99999999999999998 4   789999999998764432 12


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+...|++|                ++|+++++|                                   ..+.+++.
T Consensus       151 ~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------------------------------~~~~~~l~  195 (215)
T cd00180         151 KTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------------------------------PELKDLIR  195 (215)
T ss_pred             hcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-----------------------------------HHHHHHHH
Confidence            334456667766                888888887                                   67899999


Q ss_pred             HhcccCCCCCCCHHHHhcCc
Q psy6046         203 KILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      +|+..+|.+||++.++++|+
T Consensus       196 ~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         196 KMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             HHhhCCcccCcCHHHHhhCC
Confidence            99999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1152|consensus

Probab=99.88  E-value=6.6e-23  Score=196.29  Aligned_cols=154  Identities=18%  Similarity=0.169  Sum_probs=127.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----------ccchHHHHHHHHHHhCC---CCCcceeeeecCc---ceE
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----------SQGVVIVDEEQLLKLIK---VEPIEKYYSLDPE---PLL   72 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----------~~~~~~~~E~~il~~l~---hpnIv~~~~~~~~---~~~   72 (379)
                      .+|+|+||.|++|.++....+|++ |.+..           ...-.+-.||.||..|+   |+||+++.+++++   +|+
T Consensus       568 ~lG~GAyGkV~lai~K~n~~eVVi-K~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl  646 (772)
T KOG1152|consen  568 PLGEGAYGKVNLAIHKENNYEVVI-KMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDYYYL  646 (772)
T ss_pred             eccccccceEEEeeecccceEEEe-eehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCeeEE
Confidence            799999999999999999878774 44332           12234788999999999   9999999999987   899


Q ss_pred             EeeC---CchhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          73 GLNP---RPPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        73 v~e~---~g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      .+|-   +-+||++              ..-|..-++-.||++||||||||-+|+.+++.   |.+||+|||.|....++
T Consensus       647 ~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~---g~~klidfgsaa~~ksg  723 (772)
T KOG1152|consen  647 ETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSN---GFVKLIDFGSAAYTKSG  723 (772)
T ss_pred             EecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecC---CeEEEeeccchhhhcCC
Confidence            9999   5577777              22344445556788999999999999999985   99999999998765554


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCC
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGG  168 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~  168 (379)
                       +...++||..|.||                ++|+++|.+....-||..
T Consensus       724 -pfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  724 -PFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             -CcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence             67889999999999                999999999988888853

>KOG1345|consensus

Probab=99.86  E-value=4.7e-22  Score=174.98  Aligned_cols=205  Identities=19%  Similarity=0.188  Sum_probs=148.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC-CCCcceeeee-cCc---ceEEeeC--Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK-VEPIEKYYSL-DPE---PLLGLNP--RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~-hpnIv~~~~~-~~~---~~~v~e~--~g~l   80 (379)
                      .||+|-||.+-+|.|+.+...+| +|....  .....+.+|..---.|. |.||+.-|++ ++.   +..++|+  .|+|
T Consensus        31 ~lgeG~FgkIlL~eHr~s~t~iv-lKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL  109 (378)
T KOG1345|consen   31 QLGEGRFGKILLAEHRQSKTRIV-LKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDL  109 (378)
T ss_pred             HhcccceeeEEeeeccCCceEEE-eeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchh
Confidence            79999999999999999999988 555444  22355788876555555 8999998886 332   5678888  6666


Q ss_pred             hHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc
Q psy6046          81 YQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL  141 (379)
Q Consensus        81 ~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~  141 (379)
                      -+.                   +|+.|+|+      .++||||||.+|||+-..+ ...+||||||..+....  .....
T Consensus       110 ~snv~~~GigE~~~K~v~~ql~SAi~fMHs------knlVHRdlK~eNiLif~~d-f~rvKlcDFG~t~k~g~--tV~~~  180 (378)
T KOG1345|consen  110 RSNVEAAGIGEANTKKVFAQLLSAIEFMHS------KNLVHRDLKAENILIFDAD-FYRVKLCDFGLTRKVGT--TVKYL  180 (378)
T ss_pred             hhhcCcccccHHHHHHHHHHHHHHHHHhhc------cchhhcccccceEEEecCC-ccEEEeeecccccccCc--eehhh
Confidence            555                   78888888      9999999999999997653 35899999999875321  11112


Q ss_pred             ccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCC-----hHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         142 LGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGET-----DSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       142 ~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~-----~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      -.+..|.+|                    .+|+++|.+|||.+||....     ..+..+-..+..... +..+..+|+.
T Consensus       181 ~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~-P~~F~~fs~~  259 (378)
T KOG1345|consen  181 EYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPAL-PKKFNPFSEK  259 (378)
T ss_pred             hhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccC-chhhcccCHH
Confidence            223345555                    89999999999999997432     222222222222333 3445678999


Q ss_pred             HHHHHHHhcccCCCCC---CCHHHHhcCcccc
Q psy6046         197 AKDFIAKILIKNPMER---MTAKEALKHPWLM  225 (379)
Q Consensus       197 ~~~li~~~L~~dP~~R---pt~~e~l~hp~~~  225 (379)
                      +..+.++-|..+|++|   .++.......|..
T Consensus       260 a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~E  291 (378)
T KOG1345|consen  260 ALRLFKKSLTPRFKDRCKIWTAKKMRKCLWKE  291 (378)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHHHHHHH
Confidence            9999999999999999   5666666667764

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=1.7e-21  Score=185.44  Aligned_cols=134  Identities=18%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             CccCcCCCCceEEEEEEEcC-CCcEEEEEEecccc--------cchHHHHHHHHHHhCCCCCcceeeeecCcceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKT-TKREVVQWKERNVS--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~-tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~v~e~-   76 (379)
                      ..++||+|+||+||+|+++. ++..+| +|.....        ....+.+|+++|+.|+|+|++..+......|++||| 
T Consensus        22 ~~~~IG~G~fg~Vy~a~~~~~~~~~vA-iK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~LVmE~~  100 (365)
T PRK09188         22 ETAVLKRDVFSTVERGYFAGDPGTARA-VRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGLVRGWT  100 (365)
T ss_pred             EccEEeecCcEEEEEEEEcCCCCeEEE-EEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEEEEEcc
Confidence            45589999999999999887 555556 4543211        245689999999999999998533344568999999 


Q ss_pred             -CchhhHH-------------HHHHHHhcccCCCCCCeEeCCC-CCCcEEEeecCCCCcEEEeecccceeeccCc-----
Q psy6046          77 -RPPVYQA-------------SATTKAGSVLFPPLMDFIFFFL-QPQNLVMMGDFPNCDIKVCDFEISRVILDGI-----  136 (379)
Q Consensus        77 -~g~l~~~-------------~al~~lh~~~~~h~~~ivHrDl-kp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-----  136 (379)
                       ++.|+..             .++.|||+      +||+|||| ||+|||++.+   +.+||+|||+|+.+....     
T Consensus       101 ~G~~L~~~~~~~~~~~~~~i~~aL~~lH~------~gIiHrDL~KP~NILv~~~---~~ikLiDFGlA~~~~~~~~~~~~  171 (365)
T PRK09188        101 EGVPLHLARPHGDPAWFRSAHRALRDLHR------AGITHNDLAKPQNWLMGPD---GEAAVIDFQLASVFRRRGALYRI  171 (365)
T ss_pred             CCCCHHHhCccchHHHHHHHHHHHHHHHH------CCCeeCCCCCcceEEEcCC---CCEEEEECccceecccCcchhhh
Confidence             5555432             56667777      99999999 9999999764   789999999998764332     


Q ss_pred             ----cccccccCCCCcch
Q psy6046         137 ----EIRELLGTPDYVGK  150 (379)
Q Consensus       137 ----~~~~~~gt~~y~aP  150 (379)
                          .....++++.|+||
T Consensus       172 ~~~~d~~~~~~~~~~~~p  189 (365)
T PRK09188        172 AAYEDLRHLLKHKRTYAP  189 (365)
T ss_pred             hhhhhhhhhhccCccCCc
Confidence                12345677777777

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=1.6e-21  Score=206.03  Aligned_cols=134  Identities=18%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec----------------CCCCcEEEeecccceeeccCc-----------
Q psy6046          84 SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD----------------FPNCDIKVCDFEISRVILDGI-----------  136 (379)
Q Consensus        84 ~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~----------------~~~~~ikl~DFG~a~~~~~~~-----------  136 (379)
                      .|+.|||+      +||+||||||+|||++..                +..+.+|++|||+++......           
T Consensus        91 ~al~~lH~------~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~  164 (793)
T PLN00181         91 EIVNAAHS------QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVK  164 (793)
T ss_pred             HHHHHHHh------CCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccc
Confidence            56667666      999999999999999641                123568888888886432100           


Q ss_pred             ------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         137 ------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       137 ------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                            .....+||++||||               |+||++|||++|.+|+....  .....+.....  |+.. ....+
T Consensus       165 ~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~--~~~~~~~~~~~--~~~~-~~~~~  239 (793)
T PLN00181        165 KQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS--RTMSSLRHRVL--PPQI-LLNWP  239 (793)
T ss_pred             cCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH--HHHHHHHHhhc--Chhh-hhcCH
Confidence                  01124689999999               99999999999999875422  22222322211  2211 12246


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ...+++.+||..+|.+|||+.|++.||||....
T Consensus       240 ~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~~  272 (793)
T PLN00181        240 KEASFCLWLLHPEPSCRPSMSELLQSEFINEPR  272 (793)
T ss_pred             HHHHHHHHhCCCChhhCcChHHHhhchhhhhhh
Confidence            678999999999999999999999999997643

>KOG1165|consensus

Probab=99.85  E-value=9.5e-21  Score=171.10  Aligned_cols=208  Identities=20%  Similarity=0.245  Sum_probs=164.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-C---ch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-R---PP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~---g~   79 (379)
                      +.-||+|+||+.+.|.+.-+++.||++-.....++.++..|.+..+.|. .+.|..+|++..+   -.+|+|+ +   .+
T Consensus        33 GkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLGPSLED  112 (449)
T KOG1165|consen   33 GKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLGPSLED  112 (449)
T ss_pred             ccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhCcCHHH
Confidence            4479999999999999999999999655666677889999999999998 6889999998776   4688888 3   44


Q ss_pred             hhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC--CCcEEEeecccceeeccCc--------c
Q psy6046          80 VYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP--NCDIKVCDFEISRVILDGI--------E  137 (379)
Q Consensus        80 l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~~~~~~~--------~  137 (379)
                      ||+.            .|++.|+.+-..|++.+|+|||||+|+|+...+.  ...+.++|||+|+.+.+..        .
T Consensus       113 LFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE  192 (449)
T KOG1165|consen  113 LFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYRE  192 (449)
T ss_pred             HHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCcccc
Confidence            5555            5666666666677799999999999999986532  3568999999999876543        2


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC---CChHHHHHHHHhCCCCCC-cccccCCCHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFP-DELFEDISPEAK  198 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~---~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~  198 (379)
                      ..+..||..||+-               |+|-++++.|.|.+||.|   .+..+-+++|-......| ...+.++|.++.
T Consensus       193 ~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa  272 (449)
T KOG1165|consen  193 HKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFA  272 (449)
T ss_pred             ccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHH
Confidence            3456799999998               999999999999999976   566677888866544433 445567888888


Q ss_pred             HHHHHhcccCCCCCCCH
Q psy6046         199 DFIAKILIKNPMERMTA  215 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~  215 (379)
                      .-++-.-.++-.+-|..
T Consensus       273 ~Yl~yvR~L~F~E~PDY  289 (449)
T KOG1165|consen  273 TYLRYVRRLDFFETPDY  289 (449)
T ss_pred             HHHHHHHhcCcccCCCH
Confidence            77777777777777763

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.84  E-value=4.2e-20  Score=164.71  Aligned_cols=166  Identities=27%  Similarity=0.275  Sum_probs=130.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|++|.||+|.+..+++.++ +|.....    ....+.+|++.++.++|+|++++++.+..   .++++|+  ++
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~-iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~   82 (225)
T smart00221        4 GKKLGEGAFGKVYLARDKGTGELVA-VKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGG   82 (225)
T ss_pred             eeEeecCCCeEEEEEEEcCCCcEEE-EEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCC
Confidence            3578999999999999998888887 4554443    45678999999999999999999887553   7889998  33


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      ++.+.                     .++.+||+      .+++|+||+|+||+++..   +.++|+|||.+....... 
T Consensus        83 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~------~~i~h~di~~~ni~v~~~---~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       83 DLFDYLRKKGGKLSEEEARFYLRQILEALEYLHS------LGIVHRDLKPENILLGMD---GLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEeeCceeeEecCccc
Confidence            44433                     44566666      999999999999999985   899999999998775442 


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCC--CChHHHHHHHHhCCC
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGG--ETDSETFRNISKAQL  183 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~--~~~~~~~~~i~~~~~  183 (379)
                       ......++..|++|                ++|+++++|++|+.||.+  .+..++.+.+..+..
T Consensus       154 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  219 (225)
T smart00221      154 ALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFGVP  219 (225)
T ss_pred             ccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcCCc
Confidence             33445667777777                889999999999999977  444467777777653

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1163|consensus

Probab=99.84  E-value=2e-20  Score=162.21  Aligned_cols=200  Identities=18%  Similarity=0.180  Sum_probs=151.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCC-CCcceeeeecCc---ceEEeeC-C---chhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKV-EPIEKYYSLDPE---PLLGLNP-R---PPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~h-pnIv~~~~~~~~---~~~v~e~-~---g~l~   81 (379)
                      -||+|+||.+|.|....+|++||++-......-.++..|.++.+.|+| +.|..+..+..+   -.+||++ +   .+||
T Consensus        22 kiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLLGPsLEdLf  101 (341)
T KOG1163|consen   22 KIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLLGPSLEDLF  101 (341)
T ss_pred             eecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeeccCccHHHHH
Confidence            699999999999999999999995434444444679999999999995 445555555444   5789999 3   3333


Q ss_pred             HH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-------
Q psy6046          82 QA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-------  136 (379)
Q Consensus        82 ~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-------  136 (379)
                      ..                  .-+.|+|.      ++++||||||+|+|+.-...-..+-++|||+|+.+.+..       
T Consensus       102 nfC~R~ftmkTvLMLaDQml~RiEyvH~------r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpy  175 (341)
T KOG1163|consen  102 NFCSRRFTMKTVLMLADQMLSRIEYVHL------RNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPY  175 (341)
T ss_pred             HHHhhhhhHHhHHHHHHHHHHHHHHHHh------hccccccCCccceeeccccccceEEEEeccchhhhccccccccCcc
Confidence            33                  34677777      999999999999999875444679999999998865322       


Q ss_pred             -cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCC-cccccCCCHH
Q psy6046         137 -EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFP-DELFEDISPE  196 (379)
Q Consensus       137 -~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~-~~~~~~~s~~  196 (379)
                       .-....||..|.+-               |+|.++.++..|..||.+.   +..+-+.+|.......| ...+..+|.+
T Consensus       176 re~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~E  255 (341)
T KOG1163|consen  176 REDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAE  255 (341)
T ss_pred             ccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHH
Confidence             12346789999877               9999999999999999874   34455667766665554 4456789999


Q ss_pred             HHHHHHHhcccCCCCCCCH
Q psy6046         197 AKDFIAKILIKNPMERMTA  215 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~  215 (379)
                      +.-.+.-|-..--++-|..
T Consensus       256 F~myl~Y~R~L~F~E~Pdy  274 (341)
T KOG1163|consen  256 FAMYLNYCRGLGFEEKPDY  274 (341)
T ss_pred             HHHHHHHHhhcCCCCCCcH
Confidence            9999999987777777763

>KOG0590|consensus

Probab=99.83  E-value=9.7e-22  Score=198.82  Aligned_cols=215  Identities=18%  Similarity=0.219  Sum_probs=157.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEec----cc-c--c-chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKER----NV-S--Q-GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~----~~-~--~-~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.++|.|++|.|+.+......+.++..+..    .. .  . ...+..|..+-..|.|||++.....+.+   ++-.|||
T Consensus       323 ~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~  402 (601)
T KOG0590|consen  323 GRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEY  402 (601)
T ss_pred             cceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhhc
Confidence            349999999999998887777665532221    11 1  1 1226778888889999998776555433   3334788


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       .++||..                    .++.|+|.      .||.||||||+|+++...   +.+||+|||.+..+...
T Consensus       403 ~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~------~GiahrdlK~enll~~~~---g~lki~Dfg~~~vf~~~  473 (601)
T KOG0590|consen  403 CPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHS------MGLAHRDLKLENLLVTEN---GILKIIDFGAASVFRYP  473 (601)
T ss_pred             ccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHh------cCceeccCccccEEEecC---CceEEeecCcceeeccC
Confidence             3366655                    56677777      999999999999999985   89999999999776422


Q ss_pred             -----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHH-HHHH-hC---CCCCCccc
Q psy6046         136 -----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETF-RNIS-KA---QLDFPDEL  189 (379)
Q Consensus       136 -----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~-~~i~-~~---~~~~~~~~  189 (379)
                           ......+|+..|+||                |+|++++.|.+|+.||......+.. .... ..   ...-+...
T Consensus       474 ~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~  553 (601)
T KOG0590|consen  474 WEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRL  553 (601)
T ss_pred             cchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHH
Confidence                 134567899999999                9999999999999999754433221 1111 11   11123345


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      +..++...+.+|.+||++||.+|.|+++|++++||+......
T Consensus       554 ~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~~c~  595 (601)
T KOG0590|consen  554 LSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIECCH  595 (601)
T ss_pred             HHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcceEE
Confidence            567899999999999999999999999999999999876443

>KOG0603|consensus

Probab=99.81  E-value=8.3e-21  Score=184.68  Aligned_cols=200  Identities=23%  Similarity=0.311  Sum_probs=162.4

Q ss_pred             CcCCCCceEEEEEEE---cCCCcEEEEEEecc-----cccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-
Q psy6046          10 VGGNRARSSCSRKPE---KTTKREVVQWKERN-----VSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~---~~tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++|.|+||.|++++.   ...|..|| .|...     ......-..|..++..++ ||.+|++.+.++.   .+++.++ 
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~ya-mkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~   79 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYA-MKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL   79 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhh-hhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence            589999999998652   22344454 22222     222335667888999998 9999999888765   7788887 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+++..                    .++..+|+      .||+|||+|++||+++..   |++++.|||+++.....
T Consensus        80 rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~------l~iiyrd~k~enilld~~---Ghi~~tdfglske~v~~  150 (612)
T KOG0603|consen   80 RGGDLFTRLSKEVMFDELDVAFYLAELALALDHLHK------LGIAYRDYKLENVLLLLE---GHIKLTDFGLSKEAVKE  150 (612)
T ss_pred             ccchhhhccccCCchHHHHHHHHHHHHHHHHhhcch------hHHHHhcccccceeeccc---CccccCCchhhhHhHhh
Confidence             6677766                    45666666      999999999999999986   99999999999876544


Q ss_pred             ccccccccCCCCcch-------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK-------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP-------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      +..   |||..||||             |+|+++++|+||..||.+    +....|....+.+|..    ++..+.+++.
T Consensus       151 ~~~---cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~~~~~p~~----l~~~a~~~~~  219 (612)
T KOG0603|consen  151 KIA---CGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKAELEMPRE----LSAEARSLFR  219 (612)
T ss_pred             hhc---ccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhhccCCchh----hhHHHHHHHH
Confidence            322   999999999             999999999999999988    7888888878777764    7899999999


Q ss_pred             HhcccCCCCCCC-----HHHHhcCccccCCccc
Q psy6046         203 KILIKNPMERMT-----AKEALKHPWLMNKKQI  230 (379)
Q Consensus       203 ~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~  230 (379)
                      .++..+|..|.-     +.++++|+||....|.
T Consensus       220 ~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~  252 (612)
T KOG0603|consen  220 QLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWN  252 (612)
T ss_pred             HHHhhCHHHHhccCcchhHHHhccchheeeeHh
Confidence            999999999984     6799999999988876

>KOG0606|consensus

Probab=99.81  E-value=4.6e-20  Score=187.85  Aligned_cols=199  Identities=25%  Similarity=0.360  Sum_probs=156.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCcceEEeeCCchhhH--HHHHH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNPRPPVYQ--ASATT   87 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~v~e~~g~l~~--~~al~   87 (379)
                      +|-.|+||.||.++|+.|.+.+|. |+.....   +.|-  |+.....|.+|   +-+..++-.   -|.+-.  ..|++
T Consensus        90 lisngAygavylvrh~~trqrfa~-kiNkq~l---ilRn--ilt~a~npfvv---gDc~tllk~---~g~lPvdmvla~E  157 (1205)
T KOG0606|consen   90 LISNGAYGAVYLVRHKETRQRFAM-KINKQNL---ILRN--ILTFAGNPFVV---GDCATLLKN---IGPLPVDMVLAVE  157 (1205)
T ss_pred             eeccCCCCceeeeeccccccchhh-cccccch---hhhc--cccccCCccee---chhhhhccc---CCCCcchhhHHhH
Confidence            788999999999999999999996 6554421   1111  44555556555   111111111   122221  36899


Q ss_pred             HHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC---------------c-cccccccCCCCcch-
Q psy6046          88 KAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG---------------I-EIRELLGTPDYVGK-  150 (379)
Q Consensus        88 ~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~---------------~-~~~~~~gt~~y~aP-  150 (379)
                      |+|.      .||+|||+||+|.+++.-   |.+|++|||+++.....               + .-...||||.|+|| 
T Consensus       158 ylh~------ygivhrdlkpdnllIT~m---GhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  158 YLHS------YGIVHRDLKPDNLLITSM---GHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhcc------CCeecCCCCCCcceeeec---ccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            9999      999999999999999996   99999999999764211               0 12336899999999 


Q ss_pred             --------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCC---
Q psy6046         151 --------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---  213 (379)
Q Consensus       151 --------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---  213 (379)
                                    ++|+|+|+.+-|..||.+.++++++..+......+|+. -..++++++++|.++|..+|..|.   
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~-dea~p~Ea~dli~~LL~qnp~~Rlgt~  307 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEE-DEALPPEAQDLIEQLLRQNPLCRLGTG  307 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhcccccc-CcCCCHHHHHHHHHHHHhChHhhcccc
Confidence                          99999999999999999999999999999988888876 356789999999999999999998   


Q ss_pred             CHHHHhcCccccCCccc
Q psy6046         214 TAKEALKHPWLMNKKQI  230 (379)
Q Consensus       214 t~~e~l~hp~~~~~~~~  230 (379)
                      .+-++..|+||+...|.
T Consensus       308 ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  308 GALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             hhhhhhhccceeecccc
Confidence            57789999999988876

>KOG1164|consensus

Probab=99.80  E-value=2.3e-18  Score=163.38  Aligned_cols=213  Identities=15%  Similarity=0.087  Sum_probs=146.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc---chHHHHHHHHHHhCCC----CCcceeeeecC-c---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ---GVVIVDEEQLLKLIKV----EPIEKYYSLDP-E---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~---~~~~~~E~~il~~l~h----pnIv~~~~~~~-~---~~~v~e~   76 (379)
                      ...||+|+||.||+|.+..++...+++|......   ...+..|+.++..+..    +++..+++... .   .|+||++
T Consensus        23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l  102 (322)
T KOG1164|consen   23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSL  102 (322)
T ss_pred             eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEec
Confidence            3489999999999999988864344466554422   2268999999999983    57888887772 3   5899999


Q ss_pred             -CchhhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC--CCCcEEEeecccce--eeccC
Q psy6046          77 -RPPVYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF--PNCDIKVCDFEISR--VILDG  135 (379)
Q Consensus        77 -~g~l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~--~~~~ikl~DFG~a~--~~~~~  135 (379)
                       +.+|.+.                .|++.+..+-.+|+.|++||||||+|+.+....  +...+.|.|||+++  .+...
T Consensus       103 ~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~  182 (322)
T KOG1164|consen  103 LGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGD  182 (322)
T ss_pred             cCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCC
Confidence             4444433                333333333334449999999999999998752  12469999999998  43211


Q ss_pred             c-----c----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-cc
Q psy6046         136 I-----E----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-LF  190 (379)
Q Consensus       136 ~-----~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-~~  190 (379)
                      .     .    ...+.||..|+++               |++.++.+++.|..||.+.........+.......... ..
T Consensus       183 ~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~  262 (322)
T KOG1164|consen  183 SGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFG  262 (322)
T ss_pred             CCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhcccccc
Confidence            1     1    1235599999998               99999999999999997755332222222221111111 22


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ...+.++..+...+-..+...+|....+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~  292 (322)
T KOG1164|consen  263 DLKPEEFAKILEYIDSLDYEDKPDYEKLAE  292 (322)
T ss_pred             CCChHHHHHHHHHhhccCCcCCCCHHHHHH
Confidence            345678888888888889999998777655

>KOG1024|consensus

Probab=99.79  E-value=3.5e-19  Score=163.96  Aligned_cols=201  Identities=16%  Similarity=0.074  Sum_probs=150.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcE----EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKRE----VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~----~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e   75 (379)
                      +.++-+|.||+||+|..+.....    -|.+|....    -+...++.|.-.+..+.|||+..+.++..+    +++.+.
T Consensus       289 ~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~  368 (563)
T KOG1024|consen  289 SCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYP  368 (563)
T ss_pred             hhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEe
Confidence            34788999999999976543221    111333222    223458899999999999999998887443    455555


Q ss_pred             C--CchhhHH----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          76 P--RPPVYQA----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        76 ~--~g~l~~~----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                      +  -|.|-..                            .|+.+||.      +||||.||-..|+++++.   -.+||+|
T Consensus       369 ~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~------~~ViHkDiAaRNCvIdd~---LqVkltD  439 (563)
T KOG1024|consen  369 ATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN------HGVIHKDIAARNCVIDDQ---LQVKLTD  439 (563)
T ss_pred             ccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh------cCcccchhhhhcceehhh---eeEEecc
Confidence            4  1222111                            67888888      999999999999999986   8999999


Q ss_pred             cccceeeccCc--cccc-cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCC
Q psy6046         126 FEISRVILDGI--EIRE-LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFP  186 (379)
Q Consensus       126 FG~a~~~~~~~--~~~~-~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~  186 (379)
                      =.+++-+-...  .+.. .-....||+|               |+|+++|||+| |+.|+..-++.+....++.|..- .
T Consensus       440 saLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRl-a  518 (563)
T KOG1024|consen  440 SALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRL-A  518 (563)
T ss_pred             chhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhcccee-c
Confidence            99998653322  1111 1123468988               99999999998 99999999999999999887532 2


Q ss_pred             cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       187 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+  .++|+++..++..||+.+|++||+++|+..
T Consensus       519 QP--~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  519 QP--FNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             CC--CCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence            22  379999999999999999999999999864

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1.9e-18  Score=150.87  Aligned_cols=152  Identities=11%  Similarity=0.036  Sum_probs=111.6

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-------chHHHHHHHHHHhCC-CCCcceeeeecCcceEEeeC-
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-------GVVIVDEEQLLKLIK-VEPIEKYYSLDPEPLLGLNP-   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-------~~~~~~E~~il~~l~-hpnIv~~~~~~~~~~~v~e~-   76 (379)
                      ....+||+|+||+||.+..  .+..++ .+......       ...+.+|+++|+.|. |+++.+++++ ...|++||| 
T Consensus         5 ~~~~~l~~~~f~~v~~~~~--~~~k~~-~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~-~~~~lvmeyI   80 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG--GERKFV-RRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW-DGRHLDRSYL   80 (218)
T ss_pred             ccceeecCCCcceEEEeec--CCceee-ecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE-cCEEEEEeee
Confidence            3456999999999998864  455555 33322211       225789999999996 4778888886 457899999 


Q ss_pred             -CchhhHH-------------HHHHHHhcccCCCCCCeEeCCC-CCCcEEEeecCCCCcEEEeecccceeeccCccc---
Q psy6046          77 -RPPVYQA-------------SATTKAGSVLFPPLMDFIFFFL-QPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI---  138 (379)
Q Consensus        77 -~g~l~~~-------------~al~~lh~~~~~h~~~ivHrDl-kp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~---  138 (379)
                       +++|+..             .++.++|.      +||+|||| ||+|||++.+   +.++|+|||+|.........   
T Consensus        81 ~G~~L~~~~~~~~~~~~~qi~~~L~~lH~------~GIvHrDL~kp~NILv~~~---g~i~LIDFG~A~~~~~~~~~~r~  151 (218)
T PRK12274         81 AGAAMYQRPPRGDLAYFRAARRLLQQLHR------CGVAHNDLAKEANWLVQED---GSPAVIDFQLAVRGNPRARWMRL  151 (218)
T ss_pred             cCccHHhhhhhhhHHHHHHHHHHHHHHHH------CcCccCCCCCcceEEEcCC---CCEEEEECCCceecCCcchHHHH
Confidence             5555433             46677777      99999999 7999999865   78999999999865433211   


Q ss_pred             -c----------ccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCC
Q psy6046         139 -R----------ELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGET  170 (379)
Q Consensus       139 -~----------~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~  170 (379)
                       .          -...++.|++|                 +.|.-+|.++|+..|+.+.+
T Consensus       152 L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        152 LAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence             0          12257788888                 88999999999999886543

>KOG1023|consensus

Probab=99.77  E-value=4e-19  Score=172.65  Aligned_cols=283  Identities=16%  Similarity=0.154  Sum_probs=199.4

Q ss_pred             HHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCC
Q psy6046          52 LKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFL  105 (379)
Q Consensus        52 l~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDl  105 (379)
                      |+.+.|.|+.++++...+   .+++.+|  +|++.+.                     .++.|+|.     +....|+.|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~-----s~i~~hg~l   75 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHN-----SPIGYHGAL   75 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhc-----Ccceeeeee
Confidence            467899999999998654   7888899  8888887                     67899987     244499999


Q ss_pred             CCCcEEEeecCCCCcEEEeecccceeeccC---ccccccccCCCCcch----------------------HHHHHHHHHh
Q psy6046         106 QPQNLVMMGDFPNCDIKVCDFEISRVILDG---IEIRELLGTPDYVGK----------------------SLGVTAYVLL  160 (379)
Q Consensus       106 kp~Nill~~~~~~~~ikl~DFG~a~~~~~~---~~~~~~~gt~~y~aP----------------------SlGvil~~ll  160 (379)
                      ++.|++++..   ..+||+|||+.......   .......-...|.||                      |+|+++||++
T Consensus        76 ~s~nClvd~~---w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~  152 (484)
T KOG1023|consen   76 KSSNCLVDSR---WVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEIL  152 (484)
T ss_pred             ccccceeeee---EEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHH
Confidence            9999999995   99999999998765321   011111123345555                      9999999999


Q ss_pred             hCCCCCCC----CChHHHHHHHHh-CCCCCCcccc--cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccc
Q psy6046         161 TGFSPFGG----ETDSETFRNISK-AQLDFPDELF--EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       161 tg~~Pf~~----~~~~~~~~~i~~-~~~~~~~~~~--~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~  233 (379)
                      +...||..    ..+.++...+.. +...+-+..+  ..+++++..++..||..+|..||+++++-.-  +.........
T Consensus       153 ~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~--~~~~~~~~~~  230 (484)
T KOG1023|consen  153 FRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSK--LLTINKGGSS  230 (484)
T ss_pred             hccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhh--hhhhcccccc
Confidence            99999975    233567777777 3322322222  1466789999999999999999999988652  1111100000


Q ss_pred             cCCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHhhhhccccccccccccccccchhhhhHHhHHhh
Q psy6046         234 VGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAI  313 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  313 (379)
                      .............+...++.+.+.++..++.++..     +.+.++.+.++..        ...+++.+.++..  +.|.
T Consensus       231 ~~nl~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~-----k~d~LL~~mLP~~--------VA~~lk~G~~v~p--e~~~  295 (484)
T KOG1023|consen  231 KGNLMDSLFRMLESYADNLEKLVDERTAELEEEKK-----KTDTLLGQMLPKS--------VAESLKLGKTVDP--ESFD  295 (484)
T ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHhcCHH--------HhhHhhcCCcCCc--cccC
Confidence            00111111223344455555555554444433332     5666777776655        5666777777777  8999


Q ss_pred             hccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCC
Q psy6046         314 SLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNK  360 (379)
Q Consensus       314 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  360 (379)
                      .++..+++|+|++.+++...+++.++..+| .+..||.+|+..+--|
T Consensus       296 ~vti~fsDiv~fT~l~~~~~P~~vv~~lNd-lyt~Fd~ii~~~d~yK  341 (484)
T KOG1023|consen  296 SVTIYFSDIVGFTVLSSNSTPIQVVTLLND-LYTTFDRIIDKHDVYK  341 (484)
T ss_pred             ceeeeeHHHHHHHHHHhcCCCceeeeeccc-hHHhhhhcccccCCee
Confidence            999999999999999999999999999999 9999999999888655

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.73  E-value=8e-18  Score=145.14  Aligned_cols=121  Identities=20%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch-------------
Q psy6046          84 SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------  150 (379)
Q Consensus        84 ~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-------------  150 (379)
                      .|+.|||.      ++      ||+||+++.+   +.+|+  ||++......    ...||+.|+||             
T Consensus        28 ~~L~~lH~------~~------kp~Nil~~~~---~~~~~--fG~~~~~~~~----~~~g~~~y~aPE~~~~~~~~~~~D   86 (176)
T smart00750       28 RALRELHR------QA------KSGNILLTWD---GLLKL--DGSVAFKTPE----QSRVDPYFMAPEVIQGQSYTEKAD   86 (176)
T ss_pred             HHHHHHHh------cC------CcccEeEcCc---cceee--ccceEeeccc----cCCCcccccChHHhcCCCCcchhh
Confidence            67888887      77      9999999875   78888  9999876432    23689999999             


Q ss_pred             --HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCCC-Cc--ccccCCCH--HHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         151 --SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDF-PD--ELFEDISP--EAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       151 --SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~~-~~--~~~~~~s~--~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                        |+||++|+|++|+.||..... ...+..+....... +.  .....++.  +++++|.+||..+|.+|||+.+++.|+
T Consensus        87 iwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~  166 (176)
T smart00750       87 IYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHC  166 (176)
T ss_pred             HHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHH
Confidence              999999999999999976543 23333333322211 10  11123344  699999999999999999999999999


Q ss_pred             ccc
Q psy6046         223 WLM  225 (379)
Q Consensus       223 ~~~  225 (379)
                      |+.
T Consensus       167 ~~~  169 (176)
T smart00750      167 RAL  169 (176)
T ss_pred             HHH
Confidence            985

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.72  E-value=2.9e-16  Score=146.18  Aligned_cols=207  Identities=26%  Similarity=0.345  Sum_probs=154.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----c--cchHHHHHHHHHHhCCCC-CcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----S--QGVVIVDEEQLLKLIKVE-PIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~--~~~~~~~E~~il~~l~hp-nIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..||.|+||.||++.+.   ..++ +|....    .  ....+.+|+.+++.+.|+ +|+++++.+..   .++++++  
T Consensus         6 ~~l~~g~~~~v~~~~~~---~~~~-~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   81 (384)
T COG0515           6 RKLGEGSFGEVYLARDR---KLVA-LKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVD   81 (384)
T ss_pred             EeecCCCCeEEEEEEec---cEEE-EEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCC
Confidence            47899999999999987   4444 343332    2  255689999999999998 79999888754   4888888  


Q ss_pred             CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC-cEEEeecccceee
Q psy6046          77 RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC-DIKVCDFEISRVI  132 (379)
Q Consensus        77 ~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~-~ikl~DFG~a~~~  132 (379)
                      ++.+...                       .++.|+|.      .|++|||+||+||+++..   . .++++|||.+...
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~------~~~~hrd~kp~nil~~~~---~~~~~l~dfg~~~~~  152 (384)
T COG0515          82 GGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS------KGIIHRDIKPENILLDRD---GRVVKLIDFGLAKLL  152 (384)
T ss_pred             CCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHeeecCC---CCeEEEeccCcceec
Confidence            3333311                       33556666      999999999999999985   4 7999999999865


Q ss_pred             ccCc-------cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCCh----HHHHHHHHhCCC
Q psy6046         133 LDGI-------EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETD----SETFRNISKAQL  183 (379)
Q Consensus       133 ~~~~-------~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~----~~~~~~i~~~~~  183 (379)
                      ....       .....+||..|+||                  |+|++++++++|..||.....    ......+.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  232 (384)
T COG0515         153 PDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPT  232 (384)
T ss_pred             CCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCC
Confidence            4332       24567788888888                  799999999999999877653    455555555443


Q ss_pred             C-CCcccccCC----CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         184 D-FPDELFEDI----SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       184 ~-~~~~~~~~~----s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      . .........    ...+.+++.+++..+|..|.+..+...++|.....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  282 (384)
T COG0515         233 PSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLK  282 (384)
T ss_pred             cccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhCcc
Confidence            3 222221122    25789999999999999999999999987776544

>PRK10345 hypothetical protein; Provisional

Probab=99.72  E-value=2.9e-17  Score=145.37  Aligned_cols=111  Identities=14%  Similarity=0.041  Sum_probs=83.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc---cchHHHHHHHHHHhC-----CCCCcceeeeecCcc------e-EE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS---QGVVIVDEEQLLKLI-----KVEPIEKYYSLDPEP------L-LG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---~~~~~~~E~~il~~l-----~hpnIv~~~~~~~~~------~-~v   73 (379)
                      .+||+|+||.||.  ++.++.. + +|.....   ....+.+|+.+++.|     .||||+++|+++++-      + ++
T Consensus         8 ~~LG~G~~~~Vy~--hp~~~~k-~-IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          8 SPLGTGRHRKCYA--HPEDAQR-C-IKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             ceecCCCceEEEE--CCCCcCe-E-EEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence            4899999999995  7777665 3 4443332   346799999999999     579999999997762      2 67


Q ss_pred             eeC----CchhhHH-----------------HHH-HHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccc
Q psy6046          74 LNP----RPPVYQA-----------------SAT-TKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEIS  129 (379)
Q Consensus        74 ~e~----~g~l~~~-----------------~al-~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a  129 (379)
                      +||    +|+|.+.                 .++ .|||+      ++|+||||||+|||++..+ .+..++|+||+.+
T Consensus        84 ~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~------~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         84 ADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLD------NRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             ecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHH------CCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            898    3566554                 233 67777      9999999999999998542 2358999995444

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.72  E-value=1.3e-17  Score=146.05  Aligned_cols=113  Identities=12%  Similarity=-0.040  Sum_probs=80.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----c-------c-----------------hHHHHHHHHHHhCCCC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----Q-------G-----------------VVIVDEEQLLKLIKVE   58 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~-------~-----------------~~~~~E~~il~~l~hp   58 (379)
                      ...||+|+||.||+|.+. +|+.||+ |+....     .       .                 ....+|+.++..+.++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAv-Kv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   79 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAI-KIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTA   79 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEE-EEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            357999999999999987 8988884 544321     0       0                 1234599999999987


Q ss_pred             Ccceeeee-cCcceEEeeC-Cc-hhhHH--------------------HHHHHH-hcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          59 PIEKYYSL-DPEPLLGLNP-RP-PVYQA--------------------SATTKA-GSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        59 nIv~~~~~-~~~~~~v~e~-~g-~l~~~--------------------~al~~l-h~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      ++...+.+ ....+++||| +| .+...                    .++.++ |.      .||+||||||+||++++
T Consensus        80 ~v~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~------~giiHrDlkP~NIli~~  153 (190)
T cd05147          80 GIPCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQD------CRLVHADLSEYNLLYHD  153 (190)
T ss_pred             CCCCCcEEEecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEEEC
Confidence            76332221 2346899999 33 22111                    445555 45      99999999999999984


Q ss_pred             cCCCCcEEEeecccceee
Q psy6046         115 DFPNCDIKVCDFEISRVI  132 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~  132 (379)
                          +.++|+|||+|...
T Consensus       154 ----~~v~LiDFG~a~~~  167 (190)
T cd05147         154 ----GKLYIIDVSQSVEH  167 (190)
T ss_pred             ----CcEEEEEccccccC
Confidence                68999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.71  E-value=2.5e-17  Score=144.32  Aligned_cols=120  Identities=9%  Similarity=-0.100  Sum_probs=86.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----------------------------chHHHHHHHHHHhCCCCC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----------------------------GVVIVDEEQLLKLIKVEP   59 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----------------------------~~~~~~E~~il~~l~hpn   59 (379)
                      ..||+|+||.||+|.+. +|+.|| +|+.....                             ...+.+|...+..+.|++
T Consensus         3 ~~ig~G~~~~Vy~a~~~-~g~~va-vKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           3 GCISTGKEANVYHARTG-DGEELA-VKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             ceeecCCCcEEEEEEcC-CCCEEE-EEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            47999999999999987 898888 45543311                             112467899999999998


Q ss_pred             cceeeee-cCcceEEeeC-Cch-hhHH--------------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcE
Q psy6046          60 IEKYYSL-DPEPLLGLNP-RPP-VYQA--------------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDI  121 (379)
Q Consensus        60 Iv~~~~~-~~~~~~v~e~-~g~-l~~~--------------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~i  121 (379)
                      +.....+ ....|++||| .|. +...              .+.+.+..+.++|+ .||+||||||+||+++ +   +.+
T Consensus        81 i~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~---~~~  156 (190)
T cd05145          81 VPVPEPILLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-D---GKP  156 (190)
T ss_pred             CCCceEEEecCCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-C---CCE
Confidence            7432222 2346899999 332 2111              33444455555776 9999999999999998 3   789


Q ss_pred             EEeecccceeecc
Q psy6046         122 KVCDFEISRVILD  134 (379)
Q Consensus       122 kl~DFG~a~~~~~  134 (379)
                      +|+|||++.....
T Consensus       157 ~liDFG~a~~~~~  169 (190)
T cd05145         157 YIIDVSQAVELDH  169 (190)
T ss_pred             EEEEcccceecCC
Confidence            9999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.69  E-value=1.6e-16  Score=145.64  Aligned_cols=187  Identities=16%  Similarity=0.146  Sum_probs=111.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCC-CC---------------ccee--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKV-EP---------------IEKY--   63 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~h-pn---------------Iv~~--   63 (379)
                      .+.+||.|++|.||.+++..||+.+|++-....     ...+.+.+|.-....+.+ .+               ++++  
T Consensus        16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~   95 (288)
T PF14531_consen   16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPG   95 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETT
T ss_pred             EccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcC
Confidence            345999999999999999999999995322221     223456666655555433 11               1111  


Q ss_pred             ----eee--------cCcceEEeeC-CchhhHH---------------------------HHHHHHhcccCCCCCCeEeC
Q psy6046          64 ----YSL--------DPEPLLGLNP-RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFF  103 (379)
Q Consensus        64 ----~~~--------~~~~~~v~e~-~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHr  103 (379)
                          +..        +...++.+.- .++|...                           ..+++||.      .|++|+
T Consensus        96 ~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~------~GlVHg  169 (288)
T PF14531_consen   96 KPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS------YGLVHG  169 (288)
T ss_dssp             S-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH------TTEEES
T ss_pred             CCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh------cceEec
Confidence                111        1112334433 3333332                           33567777      999999


Q ss_pred             CCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch-----------------------HHHHHHHHHh
Q psy6046         104 FLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----------------------SLGVTAYVLL  160 (379)
Q Consensus       104 Dlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----------------------SlGvil~~ll  160 (379)
                      ||+|+|++++.+   |.+.|+||+...........  ...+..|.+|                       +||+++|.|+
T Consensus       170 di~~~nfll~~~---G~v~Lg~F~~~~r~g~~~~~--~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lW  244 (288)
T PF14531_consen  170 DIKPENFLLDQD---GGVFLGDFSSLVRAGTRYRC--SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLW  244 (288)
T ss_dssp             T-SGGGEEE-TT---S-EEE--GGGEEETTEEEEG--GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEcCC---CCEEEcChHHHeecCceeec--cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHH
Confidence            999999999986   99999999987654322111  2233445555                       9999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCC
Q psy6046         161 TGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMER  212 (379)
Q Consensus       161 tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  212 (379)
                      ||..||...........      .|..  +.++|+..++||.++|..||.+|
T Consensus       245 C~~lPf~~~~~~~~~~~------~f~~--C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  245 CGRLPFGLSSPEADPEW------DFSR--CRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HSS-STCCCGGGSTSGG------GGTT--SS---HHHHHHHHHHT-SSGGGS
T ss_pred             HccCCCCCCCccccccc------cchh--cCCcCHHHHHHHHHHccCCcccC
Confidence            99999976543211100      1211  22689999999999999999988

>KOG1240|consensus

Probab=99.64  E-value=1.1e-16  Score=163.81  Aligned_cols=202  Identities=14%  Similarity=0.121  Sum_probs=137.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      +.||++.|=+|.+|+++. |. +| +|+.-.       ....+-+.|++ ....+|||.+.+..+...   -|++-+| .
T Consensus        29 ~~LGstRFlKv~r~k~~e-G~-vV-vKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqyvk  104 (1431)
T KOG1240|consen   29 ENLGSTRFLKVARAKDRE-GL-VV-VKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQYVK  104 (1431)
T ss_pred             cccCchhhhhhhhccCCC-ce-EE-EEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHHHh
Confidence            489999999999998654 43 33 343221       22344556666 777889999998776543   5677777 5


Q ss_pred             chhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee--ccCcc--cc
Q psy6046          78 PPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI--LDGIE--IR  139 (379)
Q Consensus        78 g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~--~~~~~--~~  139 (379)
                      -.||+.              .|-+.|..+-.||..||+|||||.+|||+++=   +.+.|+||..-+..  +.+.+  ..
T Consensus       105 hnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSW---NW~~LtDFAsFKPtYLPeDNPadf~  181 (1431)
T KOG1240|consen  105 HNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSW---NWLYLTDFASFKPTYLPEDNPADFT  181 (1431)
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeee---chhhhhcccccCCccCCCCCcccce
Confidence            666666              56677777777888999999999999999985   68999999876432  11111  11


Q ss_pred             ----ccccCCCCcch--------------------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         140 ----ELLGTPDYVGK--------------------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       140 ----~~~gt~~y~aP--------------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                          +...-..|+||                          |+||+++||++ |++||.-    .++-.-+++.-..++.
T Consensus       182 fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L----SQL~aYr~~~~~~~e~  257 (1431)
T KOG1240|consen  182 FFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL----SQLLAYRSGNADDPEQ  257 (1431)
T ss_pred             EEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH----HHHHhHhccCccCHHH
Confidence                11122357777                          99999999987 7999841    1222223332111211


Q ss_pred             cccC-CCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         189 LFED-ISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       189 ~~~~-~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .... -+...+.||..|++.||++|.+|++.|+-
T Consensus       258 ~Le~Ied~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  258 LLEKIEDVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHhCcCccHHHHHHHHHccCchhccCHHHHHHh
Confidence            1111 24578999999999999999999999874

>smart00090 RIO RIO-like kinase

Probab=99.57  E-value=1.1e-14  Score=131.77  Aligned_cols=113  Identities=11%  Similarity=-0.010  Sum_probs=82.6

Q ss_pred             ccCcCCCCceEEEEEE-EcCCCcEEEEEEeccccc---------------------------chHHHHHHHHHHhCCCCC
Q psy6046           8 SHVGGNRARSSCSRKP-EKTTKREVVQWKERNVSQ---------------------------GVVIVDEEQLLKLIKVEP   59 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~-~~~tg~~~a~~k~~~~~~---------------------------~~~~~~E~~il~~l~hpn   59 (379)
                      .+.||+|+||.||+|. +..+|+.||+ |......                           ...+.+|+.++..+.+..
T Consensus        33 ~~~Lg~G~~g~Vy~a~~~~~~g~~vai-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~  111 (237)
T smart00090       33 GGCISTGKEANVYHALDFDGSGKERAV-KIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAG  111 (237)
T ss_pred             CCeeccCcceeEEEEEecCCCCcEEEE-EEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4589999999999999 7778998885 4333210                           022568999999998633


Q ss_pred             --cceeeeecCcceEEeeC-Cc-hhhHH--------------------HHHHHHhcccCCCCCC-eEeCCCCCCcEEEee
Q psy6046          60 --IEKYYSLDPEPLLGLNP-RP-PVYQA--------------------SATTKAGSVLFPPLMD-FIFFFLQPQNLVMMG  114 (379)
Q Consensus        60 --Iv~~~~~~~~~~~v~e~-~g-~l~~~--------------------~al~~lh~~~~~h~~~-ivHrDlkp~Nill~~  114 (379)
                        +.++++. ...+++||| .| .+...                    .++.+||.      .| |+||||||+||+++ 
T Consensus       112 i~~p~~~~~-~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~g~iiH~Dikp~NIli~-  183 (237)
T smart00090      112 VPVPKPIAW-RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYK------EGELVHGDLSEYNILVH-  183 (237)
T ss_pred             CCCCeeeEe-cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHh------cCCEEeCCCChhhEEEE-
Confidence              4455554 346899999 33 22111                    45566666      99 99999999999998 


Q ss_pred             cCCCCcEEEeecccceee
Q psy6046         115 DFPNCDIKVCDFEISRVI  132 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~  132 (379)
                      .   +.++|+|||.+...
T Consensus       184 ~---~~i~LiDFg~a~~~  198 (237)
T smart00090      184 D---GKVVIIDVSQSVEL  198 (237)
T ss_pred             C---CCEEEEEChhhhcc
Confidence            3   78999999998754

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.55  E-value=3.8e-14  Score=126.00  Aligned_cols=111  Identities=11%  Similarity=0.013  Sum_probs=81.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCCCCCcceeeee---cCcceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIKVEPIEKYYSL---DPEPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~hpnIv~~~~~---~~~~~~v~e   75 (379)
                      .+||+|++|.||+|..  +|..+++++.....          ....+.+|+.++..+.|+++.....+   ....+++||
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            4789999999999986  56666643322111          12357889999999999987543322   234789999


Q ss_pred             C--CchhhHH----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          76 P--RPPVYQA----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        76 ~--~g~l~~~----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |  ++++.+.                .++.++|.      .|++|||++|.||+++ .   +.++|+|||.+..
T Consensus        80 ~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~Dl~p~Nil~~-~---~~~~liDf~~a~~  143 (211)
T PRK14879         80 YIEGEPLKDLINSNGMEELELSREIGRLVGKLHS------AGIIHGDLTTSNMILS-G---GKIYLIDFGLAEF  143 (211)
T ss_pred             EeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHh------CCcccCCCCcccEEEE-C---CCEEEEECCcccC
Confidence            9  4455432                45666666      9999999999999998 3   7899999999865

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.53  E-value=4.5e-14  Score=124.48  Aligned_cols=122  Identities=13%  Similarity=0.020  Sum_probs=83.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-------------------------chHHHHHHHHHHhCCCCC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-------------------------GVVIVDEEQLLKLIKVEP--   59 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-------------------------~~~~~~E~~il~~l~hpn--   59 (379)
                      ..+.||+|+||.||+|... +|+.+|+ |......                         .....+|..++..+.|++  
T Consensus        19 ~~~~i~~G~~g~Vy~~~~~-~g~~vav-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          19 LGNQIGVGKESDVYLALDP-DGNPVAL-KFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             cCCccccCcceEEEEEEcC-CCCEEEE-EEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            3568999999999999875 7888884 4322110                         123678999999998874  


Q ss_pred             cceeeeecCcceEEeeC--CchhhHH--------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccc
Q psy6046          60 IEKYYSLDPEPLLGLNP--RPPVYQA--------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEIS  129 (379)
Q Consensus        60 Iv~~~~~~~~~~~v~e~--~g~l~~~--------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a  129 (379)
                      +...+.. ...+++|||  ++.+...        .+.+.+..+..+|+.||+||||||+||+++.+   +.++|+|||.+
T Consensus        97 v~~~~~~-~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~---~~~~liDfg~~  172 (198)
T cd05144          97 VPKPIDW-NRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDD---EKIYIIDWPQM  172 (198)
T ss_pred             CCceeec-CCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCC---CcEEEEECCcc
Confidence            4555543 346899999  3332221        12222222333444999999999999999875   89999999999


Q ss_pred             eeecc
Q psy6046         130 RVILD  134 (379)
Q Consensus       130 ~~~~~  134 (379)
                      .....
T Consensus       173 ~~~~~  177 (198)
T cd05144         173 VSTDH  177 (198)
T ss_pred             ccCCC
Confidence            76543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.53  E-value=3.6e-14  Score=126.41  Aligned_cols=111  Identities=7%  Similarity=-0.042  Sum_probs=83.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc--c----hH------HHHHHHHHHhCCCCCcceeeeecC---------
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--G----VV------IVDEEQLLKLIKVEPIEKYYSLDP---------   68 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~----~~------~~~E~~il~~l~hpnIv~~~~~~~---------   68 (379)
                      +||.|+||.||++..  ++..+| +|......  .    +.      +.+|+..+.+|.||+|.....++.         
T Consensus        38 ~l~~~~f~~v~l~~~--~~~~~i-iKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~  114 (232)
T PRK10359         38 VFRNIDDTKVSLIDT--DYGKYI-LKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRY  114 (232)
T ss_pred             EecCCCceEEEEEec--CCCcEE-EEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccc
Confidence            899999999999754  455666 56654311  1    12      578999999999999988766522         


Q ss_pred             --cceEEeeC--CchhhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          69 --EPLLGLNP--RPPVYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        69 --~~~~v~e~--~g~l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                        ..+++|||  |.++.+.            .++..+|.      .|++|||+||+||+++.+   + ++|+|||.....
T Consensus       115 ~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~------~gi~H~Dikp~Nili~~~---g-i~liDfg~~~~~  184 (232)
T PRK10359        115 AHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQ------HGMVSGDPHKGNFIVSKN---G-LRIIDLSGKRCT  184 (232)
T ss_pred             cCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHH------cCCccCCCChHHEEEeCC---C-EEEEECCCcccc
Confidence              36899999  4455332            55666666      999999999999999875   6 999999998765


Q ss_pred             c
Q psy6046         133 L  133 (379)
Q Consensus       133 ~  133 (379)
                      .
T Consensus       185 ~  185 (232)
T PRK10359        185 A  185 (232)
T ss_pred             c
Confidence            3

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.52  E-value=1.2e-13  Score=139.82  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEE-EEeccc---c------cchHHHHHHHHHHhCCCCCcceeeeec---CcceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQ-WKERNV---S------QGVVIVDEEQLLKLIKVEPIEKYYSLD---PEPLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~-~k~~~~---~------~~~~~~~E~~il~~l~hpnIv~~~~~~---~~~~~v~   74 (379)
                      .++||+|+||.||+|......  +++ ++....   .      ..+.+.+|+++++.++|++++..+.+.   ...+++|
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~~~--~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~  415 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVM  415 (535)
T ss_pred             cceeccCCcEEEEEEeecCcc--ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEE
Confidence            458999999999999864433  332 222111   1      124588999999999999987644332   2478999


Q ss_pred             eC--CchhhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +++|.+.            .++.+||+      .|++||||||+||++++    +.++|+|||+++..
T Consensus       416 E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~------~giiHrDlkp~NILl~~----~~~~liDFGla~~~  477 (535)
T PRK09605        416 EYIGGKDLKDVLEGNPELVRKVGEIVAKLHK------AGIVHGDLTTSNFIVRD----DRLYLIDFGLGKYS  477 (535)
T ss_pred             EecCCCcHHHHHHHHHHHHHHHHHHHHHHHh------CCCccCCCChHHEEEEC----CcEEEEeCcccccC
Confidence            99  6666654            56677777      99999999999999943    78999999999763

>KOG0590|consensus

Probab=99.52  E-value=1.1e-15  Score=154.95  Aligned_cols=214  Identities=19%  Similarity=0.259  Sum_probs=161.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      -||+|+|+.|-.+....+.+..++.+.....     ...++..|..+-..+. |+|++.+++...+   .++..++  +|
T Consensus        27 ~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~  106 (601)
T KOG0590|consen   27 SIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGG  106 (601)
T ss_pred             cccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCccccc
Confidence            5899999999999877776666666655442     2244666888988998 9999999998665   6778888  66


Q ss_pred             hhhHH------------HHHHHHh----cccCCC-CCCeEeCCCCCCcEEEeecCCCC-cEEEeecccceeecc-Cc---
Q psy6046          79 PVYQA------------SATTKAG----SVLFPP-LMDFIFFFLQPQNLVMMGDFPNC-DIKVCDFEISRVILD-GI---  136 (379)
Q Consensus        79 ~l~~~------------~al~~lh----~~~~~h-~~~ivHrDlkp~Nill~~~~~~~-~ikl~DFG~a~~~~~-~~---  136 (379)
                      ++|..            .+-.|+.    .+-++| ..++.|||+||+|.+++..   + .++++|||+|..+.. ..   
T Consensus       107 ~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s---~~~l~~~df~~At~~~~~~g~~~  183 (601)
T KOG0590|consen  107 SLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDES---GSALKIADFGLATAYRNKNGAER  183 (601)
T ss_pred             ccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccC---CCcccCCCchhhccccccCCcce
Confidence            66655            1222222    233355 6999999999999999986   5 899999999988765 22   


Q ss_pred             ccccccc-CCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHH-HHHHHhCCCCCCcccccCCCHHHH
Q psy6046         137 EIRELLG-TPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSET-FRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       137 ~~~~~~g-t~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .....+| ++.|+||                |+|+++..+++|..||........ +.........+....|..++....
T Consensus       184 ~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (601)
T KOG0590|consen  184 SLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAH  263 (601)
T ss_pred             eeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhh
Confidence            2445778 9999999                999999999999999965433221 111122222223445678999999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      +++.++|..+|..|.+.+++..+||+..
T Consensus       264 ~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  264 DLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             hcccccccCCchhccccccccccccccc
Confidence            9999999999999999999999999988

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.51  E-value=1.6e-13  Score=120.92  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=80.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----c------cchHHHHHHHHHHhCCCCCc--ceeeeecC-cceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----S------QGVVIVDEEQLLKLIKVEPI--EKYYSLDP-EPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~------~~~~~~~E~~il~~l~hpnI--v~~~~~~~-~~~~v~e~   76 (379)
                      +||+|+||.||+|.  .+|..++++.....    .      ...++.+|+++++.+.|+++  ..++.... ..+++||+
T Consensus         1 ~ig~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            58999999999998  45666664332221    1      12457789999999998764  34444433 36899999


Q ss_pred             --CchhhHH-------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 --RPPVYQA-------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 --~g~l~~~-------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                        ++++.+.             .++.++|.      .|++|||++|.||+++ .   +.++++|||++..
T Consensus        79 ~~g~~l~~~~~~~~~~~~~~i~~~l~~lH~------~gi~H~Dl~~~Nil~~-~---~~~~liDfg~a~~  138 (199)
T TIGR03724        79 IEGKPLKDVIEEGNDELLREIGRLVGKLHK------AGIVHGDLTTSNIIVR-D---DKLYLIDFGLGKY  138 (199)
T ss_pred             ECCccHHHHHhhcHHHHHHHHHHHHHHHHH------CCeecCCCCcceEEEE-C---CcEEEEECCCCcC
Confidence              5555433             45566666      9999999999999998 3   7899999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG4158|consensus

Probab=99.48  E-value=1.2e-13  Score=128.11  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeecccceeeccC-------ccccccccCCCCcch-----
Q psy6046          84 SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISRVILDG-------IEIRELLGTPDYVGK-----  150 (379)
Q Consensus        84 ~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~~~~~~-------~~~~~~~gt~~y~aP-----  150 (379)
                      +|..+||.      +||.|||+|.+|||+.-+++ --.+.|+|||.+-.-...       +..-..-|.-.-|||     
T Consensus       352 Eav~hL~~------hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta  425 (598)
T KOG4158|consen  352 EAVTHLHK------HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATA  425 (598)
T ss_pred             HHHHHHHH------ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhc
Confidence            56666666      99999999999999976532 246899999987432210       111223466677888     


Q ss_pred             ----------------HHHHHHHHHhhCCCCCCCCChH--HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCC
Q psy6046         151 ----------------SLGVTAYVLLTGFSPFGGETDS--ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMER  212 (379)
Q Consensus       151 ----------------SlGvil~~lltg~~Pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  212 (379)
                                      +.|.+.||++...-||.+....  +... -....++   .....+++.+++++..+|..||++|
T Consensus       426 ~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~-Yqe~qLP---alp~~vpp~~rqlV~~lL~r~pskR  501 (598)
T KOG4158|consen  426 VPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT-YQESQLP---ALPSRVPPVARQLVFDLLKRDPSKR  501 (598)
T ss_pred             CCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhh-hhhhhCC---CCcccCChHHHHHHHHHhcCCcccc
Confidence                            9999999999999999873321  1111 1122222   2334689999999999999999999


Q ss_pred             CCHH---HHhcCcccc
Q psy6046         213 MTAK---EALKHPWLM  225 (379)
Q Consensus       213 pt~~---e~l~hp~~~  225 (379)
                      +++.   -+++-..+.
T Consensus       502 vsp~iAANvl~LsLw~  517 (598)
T KOG4158|consen  502 VSPNIAANVLNLSLWR  517 (598)
T ss_pred             CCccHHHhHHHHHHhc
Confidence            9843   444433333

>KOG1166|consensus

Probab=99.44  E-value=2.9e-13  Score=140.81  Aligned_cols=154  Identities=16%  Similarity=0.069  Sum_probs=98.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC---CCCcceeeee--c-CcceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK---VEPIEKYYSL--D-PEPLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~---hpnIv~~~~~--~-~~~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|.+.. |+.+| +|.......-.+.-=.+++.+|+   -|-|..++..  + ..-++++||  -|+|
T Consensus       704 ~e~G~g~y~~vy~a~~~~-~~~~a-lK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtl  781 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATHSN-GKLVA-LKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTL  781 (974)
T ss_pred             eeeccccceEEEEeecCC-CcEEE-EEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccccccH
Confidence            379999999999999877 77777 66655533222222233444444   1233333322  2 236889999  7888


Q ss_pred             hHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec----CCCCcEEEeeccccee---eccCcccc
Q psy6046          81 YQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD----FPNCDIKVCDFEISRV---ILDGIEIR  139 (379)
Q Consensus        81 ~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~----~~~~~ikl~DFG~a~~---~~~~~~~~  139 (379)
                      .+.              .+.+.|.-+-.+|..+|||+||||+|+++...    .++..++|+|||-+--   ++++....
T Consensus       782 ld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~  861 (974)
T KOG1166|consen  782 LDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFK  861 (974)
T ss_pred             HHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEe
Confidence            888              22333333333555999999999999999753    3356799999999853   34444444


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCC
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFS  164 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~  164 (379)
                      ..++|-.+-.+               .+..++|.||.|+.
T Consensus       862 ~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  862 AVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             eeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            44555444333               66777888887753

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.42  E-value=6.6e-13  Score=115.69  Aligned_cols=120  Identities=12%  Similarity=-0.048  Sum_probs=80.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----chH----------------------HHHHHHHHHhCCCCC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----GVV----------------------IVDEEQLLKLIKVEP-   59 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----~~~----------------------~~~E~~il~~l~hpn-   59 (379)
                      ...||+|+||.||+|.+. +|+.|| +|......     ...                      ...|...+..+.+.. 
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~va-vKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~   79 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVA-VKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGV   79 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEE-EEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCC
Confidence            357999999999999977 788877 45433211     111                      135666666665443 


Q ss_pred             -cceeeeecCcceEEeeC-Cc------hhhHH--------HHHHHHhcccCCCC-CCeEeCCCCCCcEEEeecCCCCcEE
Q psy6046          60 -IEKYYSLDPEPLLGLNP-RP------PVYQA--------SATTKAGSVLFPPL-MDFIFFFLQPQNLVMMGDFPNCDIK  122 (379)
Q Consensus        60 -Iv~~~~~~~~~~~v~e~-~g------~l~~~--------~al~~lh~~~~~h~-~~ivHrDlkp~Nill~~~~~~~~ik  122 (379)
                       +.+.+.. ...++++|| .|      .+...        .+.+.+..+..+|. .||+||||||+||+++ +   +.++
T Consensus        80 ~~~~~~~~-~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~---~~~~  154 (187)
T cd05119          80 PVPKPIDL-NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-D---GKVY  154 (187)
T ss_pred             CCCceEec-CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-C---CcEE
Confidence             3444443 357899999 33      12111        23344444555777 9999999999999999 4   7999


Q ss_pred             Eeecccceeecc
Q psy6046         123 VCDFEISRVILD  134 (379)
Q Consensus       123 l~DFG~a~~~~~  134 (379)
                      |+|||.+.....
T Consensus       155 liDfg~a~~~~~  166 (187)
T cd05119         155 IIDVPQAVEIDH  166 (187)
T ss_pred             EEECcccccccC
Confidence            999999976533

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0195|consensus

Probab=99.32  E-value=2.8e-12  Score=113.71  Aligned_cols=194  Identities=15%  Similarity=0.101  Sum_probs=140.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      -|.+...|+.|+|+...+  .+| .|+.+..+     ...+..|.-.|+-+.||||..+.+.+..   +.++..|  .|+
T Consensus       197 kl~e~hsgelwrgrwqgn--div-akil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  197 KLAESHSGELWRGRWQGN--DIV-AKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhccCCCcccccccccCc--chh-hhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            366778899999985544  343 23333322     2347889999999999999999999876   6677777  788


Q ss_pred             hhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          80 VYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        80 l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      ||..                      .++.|||++-    .-|.---|....++++++- ...+-.+|--++.+      
T Consensus       274 lynvlhe~t~vvvd~sqav~faldiargmaflhsle----p~ipr~~lns~hvmidedl-tarismad~kfsfq------  342 (448)
T KOG0195|consen  274 LYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE----PMIPRFYLNSKHVMIDEDL-TARISMADTKFSFQ------  342 (448)
T ss_pred             HHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc----hhhhhhhcccceEEecchh-hhheecccceeeee------
Confidence            8877                      5678888741    1133335677788888761 13344555444432      


Q ss_pred             ccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         138 IRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       138 ~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .....-+|.||+|                  |+.++++||-|...||...++.++-.+|.-..+..  .+++.+|+.+..
T Consensus       343 e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv--~ippgis~hm~k  420 (448)
T KOG0195|consen  343 EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRV--HIPPGISRHMNK  420 (448)
T ss_pred             ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccc--cCCCCccHHHHH
Confidence            2223457889999                  99999999999999999999888877775544332  233579999999


Q ss_pred             HHHHhcccCCCCCCCHHHHh
Q psy6046         200 FIAKILIKNPMERMTAKEAL  219 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l  219 (379)
                      |+.-|+..||.+||.+..+.
T Consensus       421 lm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  421 LMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             HHHHHhcCCCCcCCCcceeh
Confidence            99999999999999987653

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.32  E-value=7.5e-12  Score=113.50  Aligned_cols=111  Identities=11%  Similarity=0.043  Sum_probs=80.0

Q ss_pred             CcC-CCCceEEEEEEEcCCCcEEEEEEeccc----------------ccchHHHHHHHHHHhCCCCCc--ceeeeecC--
Q psy6046          10 VGG-NRARSSCSRKPEKTTKREVVQWKERNV----------------SQGVVIVDEEQLLKLIKVEPI--EKYYSLDP--   68 (379)
Q Consensus        10 ~lG-~G~fG~V~~a~~~~tg~~~a~~k~~~~----------------~~~~~~~~E~~il~~l~hpnI--v~~~~~~~--   68 (379)
                      +|| .||.|+||.+...  +..+|+ |....                .....+.+|+.++..|.|++|  ...+.+..  
T Consensus        38 ~lg~~~g~gtv~~v~~~--~~~~vl-k~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         38 VVGSAKGRGTTWFVQTP--GVNWVL-RHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             eeecCCCCccEEEEEeC--CceEEE-EEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            798 8999999999753  556664 32211                123468899999999998885  44444321  


Q ss_pred             -----cceEEeeC--C-chhhHH---------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          69 -----EPLLGLNP--R-PPVYQA---------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        69 -----~~~~v~e~--~-g~l~~~---------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                           ..++++|+  + +++.+.               .++.+||.      .||+||||||.|||++.+   +.++|+|
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~------~GI~HrDlkp~NILv~~~---~~v~LID  185 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHD------AGVYHADLNAHNILLDPD---GKFWLID  185 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHH------CCCCCCCCCchhEEEcCC---CCEEEEE
Confidence                 13589998  3 344432               55666666      999999999999999875   6899999


Q ss_pred             cccceee
Q psy6046         126 FEISRVI  132 (379)
Q Consensus       126 FG~a~~~  132 (379)
                      ||.+...
T Consensus       186 fg~~~~~  192 (239)
T PRK01723        186 FDRGELR  192 (239)
T ss_pred             CCCcccC
Confidence            9998653

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.30  E-value=2.7e-11  Score=100.67  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-chHHHHHHHHHHhCCC--CCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-GVVIVDEEQLLKLIKV--EPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-~~~~~~E~~il~~l~h--pnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+++.||++....  ..++ +|...... ...+.+|+.+++.++|  +++.+++.....   .++++|+  ++.+
T Consensus         4 ~~i~~g~~~~v~~~~~~~--~~~~-iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~   80 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKD--EDYV-LKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETL   80 (155)
T ss_pred             eecccccccceEEEEecC--CeEE-EEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeec
Confidence            468999999999999644  4555 55554432 3578999999999987  488888887764   8999999  4433


Q ss_pred             hH----H---------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          81 YQ----A---------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        81 ~~----~---------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..    .         .++.++|.   .+..+++|+|++|.||+++..   +.++++|||.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~lh~---~~~~~i~H~Dl~~~Nil~~~~---~~~~l~Df~~~~~  138 (155)
T cd05120          81 DEVSEEEKEDIAEQLAELLAKLHQ---LPLLVLCHGDLHPGNILVDDG---KILGIIDWEYAGY  138 (155)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhC---CCceEEEecCCCcceEEEECC---cEEEEEecccccC
Confidence            31    1         45666665   222579999999999999974   7899999998864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.26  E-value=2.6e-11  Score=119.30  Aligned_cols=123  Identities=17%  Similarity=0.086  Sum_probs=77.5

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchH-----------------------------------------
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVV-----------------------------------------   44 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~-----------------------------------------   44 (379)
                      |..+.||+|++|.||+|+.+ +|+.|| +|+....-...                                         
T Consensus       120 fd~~plasaSigQVh~A~l~-~G~~Va-VKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       120 FEEKPLAAASIAQVHRARLV-DGKEVA-VKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             CCCcceeeeehhheEEEEec-CCCEEE-EEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            44568999999999999864 688877 56654432222                                         


Q ss_pred             --HHHHHHHHHhCC-----CCCc--ceeee-ecCcceEEeeC--CchhhHH------------HHHHHHhc-ccCCCCCC
Q psy6046          45 --IVDEEQLLKLIK-----VEPI--EKYYS-LDPEPLLGLNP--RPPVYQA------------SATTKAGS-VLFPPLMD   99 (379)
Q Consensus        45 --~~~E~~il~~l~-----hpnI--v~~~~-~~~~~~~v~e~--~g~l~~~------------~al~~lh~-~~~~h~~~   99 (379)
                        +.+|+..+..+.     +|++  .++|. +....+++|||  ++++.+.            .+...+.. +..+|..|
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g  277 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDG  277 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Confidence              333444444442     2332  22222 23447899999  4444332            11111110 11134599


Q ss_pred             eEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046         100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus       100 ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      ++|+|++|.||+++.+   +.++++|||++..+.
T Consensus       278 ~~H~D~hPgNilv~~~---g~i~liDfG~~~~l~  308 (437)
T TIGR01982       278 FFHADLHPGNIFVLKD---GKIIALDFGIVGRLS  308 (437)
T ss_pred             ceeCCCCcccEEECCC---CcEEEEeCCCeeECC
Confidence            9999999999999875   899999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1033|consensus

Probab=99.16  E-value=2.2e-11  Score=117.21  Aligned_cols=118  Identities=26%  Similarity=0.380  Sum_probs=88.6

Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-------cccccccCCCCcch---------------HHHHH
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-------EIRELLGTPDYVGK---------------SLGVT  155 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-------~~~~~~gt~~y~aP---------------SlGvi  155 (379)
                      +|.+|||+||.||++..+   ..+||+|||+........       ..+...||++||+|               |||+|
T Consensus       375 k~~ihrdlkp~nif~~~d---~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGli  451 (516)
T KOG1033|consen  375 KGLIHRDLKPSNIFFSDD---DQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLI  451 (516)
T ss_pred             ccchhhhccccccccccc---hhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHH
Confidence            789999999999999986   789999999998776544       34557899999999               99999


Q ss_pred             HHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         156 AYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       156 l~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      ++|+++ =..+|.   ....+..+..+.+  |+..+.+. ++-.+|+..||.+.|.+||++.+.-.|+|.
T Consensus       452 l~EL~~~f~T~~e---r~~t~~d~r~g~i--p~~~~~d~-p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  452 LAELLIQFSTQFE---RIATLTDIRDGII--PPEFLQDY-PEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             HHHHHHHhccHHH---HHHhhhhhhcCCC--ChHHhhcC-cHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence            999987 222221   1223444555544  33333333 556689999999999999988877777764

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.12  E-value=3.2e-10  Score=113.35  Aligned_cols=125  Identities=16%  Similarity=0.067  Sum_probs=81.9

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccc-------------------------------------hH----
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQG-------------------------------------VV----   44 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~-------------------------------------~~----   44 (379)
                      |...-||+|++|.||+|+.+.+|+.|| +|+....-.                                     ..    
T Consensus       122 fd~~PlasaSiaQVh~A~l~~~G~~VA-VKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~E  200 (537)
T PRK04750        122 FDIKPLASASIAQVHFARLKDNGREVV-VKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDE  200 (537)
T ss_pred             cChhhhcCCCccEEEEEEECCCCCEEE-EEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHh
Confidence            444589999999999999998899988 566543210                                     11    


Q ss_pred             --HHHHHHHHHhCC----CCCcce---ee-eecCcceEEeeC--CchhhHH----------------HHHHHHhcccCCC
Q psy6046          45 --IVDEEQLLKLIK----VEPIEK---YY-SLDPEPLLGLNP--RPPVYQA----------------SATTKAGSVLFPP   96 (379)
Q Consensus        45 --~~~E~~il~~l~----hpnIv~---~~-~~~~~~~~v~e~--~g~l~~~----------------~al~~lh~~~~~h   96 (379)
                        +.+|+..+.++.    +.+.+.   +| +++...+++|||  |+.+.+.                .+-.|+.++   .
T Consensus       201 lD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi---f  277 (537)
T PRK04750        201 LDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV---F  277 (537)
T ss_pred             hCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH---H
Confidence              344444444443    333232   22 234457899999  6565442                122333333   2


Q ss_pred             CCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceeecc
Q psy6046          97 LMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVILD  134 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~~~  134 (379)
                      ..|++|+|++|.||+++.++ ..+.++++|||++..++.
T Consensus       278 ~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        278 RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            48999999999999999762 123899999999987744

>KOG0601|consensus

Probab=99.11  E-value=7.2e-11  Score=115.53  Aligned_cols=211  Identities=16%  Similarity=0.077  Sum_probs=152.1

Q ss_pred             CcCC--CCceEEEEEEE--cCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-
Q psy6046          10 VGGN--RARSSCSRKPE--KTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus        10 ~lG~--G~fG~V~~a~~--~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      .+|+  |++|.||.+..  ..++..+|++|....    .....=.+|+.-.+.++ |++.++.+..+++   .++-+|+ 
T Consensus       121 ~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~  200 (524)
T KOG0601|consen  121 RTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFIQTELC  200 (524)
T ss_pred             ccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcceeeeccc
Confidence            6899  99999999998  888988886553222    22333467777777777 9999997777665   6777888 


Q ss_pred             CchhhHH---------------HHHHHHh----cccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          77 RPPVYQA---------------SATTKAG----SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        77 ~g~l~~~---------------~al~~lh----~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +..+.++               .-...+.    ++-.+|..+++|-|+||.||+...+  ....+++|||+...+.++..
T Consensus       201 ~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~--~~s~~~~df~~v~~i~~~~~  278 (524)
T KOG0601|consen  201 GESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSD--WTSCKLTDFGLVSKISDGNF  278 (524)
T ss_pred             cchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccc--cceeecCCcceeEEccCCcc
Confidence            5555554               1111111    2222555999999999999999985  26789999999998866542


Q ss_pred             ccc------cccCCCCcch--------------HHHHHHHHHhhCCCCCCCC--ChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         138 IRE------LLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGE--TDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       138 ~~~------~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ...      ..|...|++|              ++|.+..+..+|..++...  +.+.   .+..+.  .|.+++...+.
T Consensus       279 ~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~---~~r~~~--ip~e~~~~~s~  353 (524)
T KOG0601|consen  279 SSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWS---QLRQGY--IPLEFCEGGSS  353 (524)
T ss_pred             ccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcc---cccccc--CchhhhcCcch
Confidence            221      2577789999              9999998888887666433  2222   222222  45556666788


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      .+...+..|+..+|..|++++.+++|+++...
T Consensus       354 ~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  354 SLRSVTSQMLDEDPRLRLTAQILTALNVIHSK  385 (524)
T ss_pred             hhhhHHHHhcCcchhhhhHHHHHhccccccch
Confidence            88889999999999999999999999999743

>KOG0606|consensus

Probab=99.06  E-value=8.7e-11  Score=120.98  Aligned_cols=215  Identities=22%  Similarity=0.253  Sum_probs=161.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEE--EEe---cccccchHHHHHHHHHHhCCCCCcceeeeecC---cceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQ--WKE---RNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP---EPLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~--~k~---~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~---~~~~v~e~--~g~   79 (379)
                      -+-+|++|.++.+.-..+|...++  .+.   +...+.+.+.++-.++-...+|-++..+.-+.   ..+++++|  +|.
T Consensus       811 p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~  890 (1205)
T KOG0606|consen  811 PSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNGGD  890 (1205)
T ss_pred             cccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHhccCC
Confidence            567899999999988777744331  111   11223344555555655566788887666522   27889998  566


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec------
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL------  133 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~------  133 (379)
                      ++..                    .+.+|||.      ..+.|||++|.|++....   +..+++|||......      
T Consensus       891 ~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s------~~r~h~~~~p~~~l~~~~---gh~~l~~~~t~~~vg~~~p~~  961 (1205)
T KOG0606|consen  891 LPSKLHNSGCLSAEPARSPILERVQSLESLHS------SLRKHRDLKPDSLLIAYD---GHRPLTDFGTLSKVGLIPPTT  961 (1205)
T ss_pred             chhhhhcCCCcccccccchhHHHHhhhhcccc------chhhcccccccchhhccc---CCcccCccccccccccccCcC
Confidence            6665                    45677777      779999999999999886   899999998433210      


Q ss_pred             c---------------C-----------ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH
Q psy6046         134 D---------------G-----------IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS  172 (379)
Q Consensus       134 ~---------------~-----------~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~  172 (379)
                      .               .           .......||+.|.+|               +.|+++++.++|.+||...+++
T Consensus       962 ~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq 1041 (1205)
T KOG0606|consen  962 DLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQ 1041 (1205)
T ss_pred             CcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchh
Confidence            0               0           001235689999999               9999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHH---HHhcCccccCCccccccc
Q psy6046         173 ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAK---EALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~---e~l~hp~~~~~~~~~~~~  234 (379)
                      ..++.|..+..+.|.- ....+..+.+++.++|..+|.+|..+.   ++-.||||+...|.....
T Consensus      1042 ~~f~ni~~~~~~~p~g-~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~~l~~ 1105 (1205)
T KOG0606|consen 1042 QIFENILNRDIPWPEG-PEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWENLAL 1105 (1205)
T ss_pred             hhhhccccCCCCCCCC-ccccChhhhhhhhhhhccCchhccCcccccccccCCccCCCCcccccc
Confidence            9999998888776642 235789999999999999999999877   899999999999887644

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.01  E-value=1.7e-09  Score=92.43  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCcc-eeeeecC-cceEEeeC--CchhhH-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIE-KYYSLDP-EPLLGLNP--RPPVYQ-   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv-~~~~~~~-~~~~v~e~--~g~l~~-   82 (379)
                      .|+.|.++.||+++..  |..++ +|......  .....+|+.+++.+.+.+++ +++.... ..+++||+  +..+.. 
T Consensus         5 ~l~~G~~~~vy~~~~~--~~~~~-lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~   81 (170)
T cd05151           5 PLKGGMTNKNYRVEVA--NKKYV-VRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTE   81 (170)
T ss_pred             ecCCcccCceEEEEEC--CeEEE-EEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccccc
Confidence            5788999999999854  66676 56554432  34568899999999765543 4555443 26899999  433331 


Q ss_pred             ----H-------HHHHHHhcccCCCCCC-----eEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          83 ----A-------SATTKAGSVLFPPLMD-----FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        83 ----~-------~al~~lh~~~~~h~~~-----ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                          .       .++..||.      .+     ++|+|++|.||+++.    +.++++|||.+..
T Consensus        82 ~~~~~~~~~~l~~~l~~LH~------~~~~~~~~~HgD~~~~Nil~~~----~~~~liDf~~a~~  136 (170)
T cd05151          82 DFSDPENLEKIAKLLKKLHS------SPLPDLVPCHNDLLPGNFLLDD----GRLWLIDWEYAGM  136 (170)
T ss_pred             cccCHHHHHHHHHHHHHHhC------CCCCCceeecCCCCcCcEEEEC----CeEEEEecccccC
Confidence                0       55677776      66     599999999999983    6799999999853

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.88  E-value=2.2e-08  Score=85.09  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----------chHHHHHHHHHHhCCC--CCcceeeeecCc-ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----------GVVIVDEEQLLKLIKV--EPIEKYYSLDPE-PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----------~~~~~~E~~il~~l~h--pnIv~~~~~~~~-~~~v~   74 (379)
                      .++++|+=+.+|.+..  -|.. |++|..-.+.           ..+..+|++++..+.-  -+...+|++... ..++|
T Consensus         2 ~~i~~GAEa~i~~~~~--~g~~-av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~m   78 (204)
T COG3642           2 DLIKQGAEAIIYLTDF--LGLP-AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVM   78 (204)
T ss_pred             chhhCCcceeEEeeec--cCcc-eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEE
Confidence            3688999999999853  3334 4455443311           3457889999998874  344556666655 67999


Q ss_pred             eC-CchhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          75 NP-RPPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        75 e~-~g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      || .|.+...              .-+.-||.      .||+|+||.++||++.+    +.+.++|||++..
T Consensus        79 e~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~------~givHGDLTtsNiIl~~----~~i~~IDfGLg~~  140 (204)
T COG3642          79 EYIEGELLKDALEEARPDLLREVGRLVGKLHK------AGIVHGDLTTSNIILSG----GRIYFIDFGLGEF  140 (204)
T ss_pred             EEeCChhHHHHHHhcchHHHHHHHHHHHHHHh------cCeecCCCccceEEEeC----CcEEEEECCcccc
Confidence            99 6666652              33555666      99999999999999997    4699999999975

>KOG3087|consensus

Probab=98.77  E-value=8.9e-08  Score=81.17  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------cchHHHHHHHHHHhCCCCCc--ceeeeecC-cc
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------QGVVIVDEEQLLKLIKVEPI--EKYYSLDP-EP   70 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------~~~~~~~E~~il~~l~hpnI--v~~~~~~~-~~   70 (379)
                      |+.-.++-+|+=+.|+++.  ..|+.++ +|..-.+           .+.+.++|+++|.++.--.|  ..++.+.. .-
T Consensus         9 ~~~l~likQGAEArv~~~~--~~Ge~~i-IK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~   85 (229)
T KOG3087|consen    9 PDSLELIKQGAEARVPRGS--FSGEAAI-IKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGG   85 (229)
T ss_pred             CCcceeeeccceeeEeeec--cCCceeE-EeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            3434588899999999997  6676655 4544331           13458899999999884343  33444332 26


Q ss_pred             eEEeeC-Cc--hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          71 LLGLNP-RP--PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        71 ~~v~e~-~g--~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                      ++.||+ .|  .+-++                      ..+.-||.      .+|+|+||..+||++.+++....+.++|
T Consensus        86 ~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~------ndiiHGDLTTSNill~~~~~~~~~~lId  159 (229)
T KOG3087|consen   86 QIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD------NDIIHGDLTTSNILLRSDGNQITPILID  159 (229)
T ss_pred             eEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh------CCeecccccccceEEecCCCcCceEEEe
Confidence            788998 33  22111                      34566666      9999999999999999886555669999


Q ss_pred             ccccee
Q psy6046         126 FEISRV  131 (379)
Q Consensus       126 FG~a~~  131 (379)
                      ||++..
T Consensus       160 fgls~~  165 (229)
T KOG3087|consen  160 FGLSSV  165 (229)
T ss_pred             ecchhc
Confidence            999864

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.76  E-value=5.5e-08  Score=84.92  Aligned_cols=113  Identities=14%  Similarity=0.037  Sum_probs=75.8

Q ss_pred             cCcCCCCceEEEEEEEcC------CCcEEEEEEeccc-------------------------ccchH----HHHHHHHHH
Q psy6046           9 HVGGNRARSSCSRKPEKT------TKREVVQWKERNV-------------------------SQGVV----IVDEEQLLK   53 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~------tg~~~a~~k~~~~-------------------------~~~~~----~~~E~~il~   53 (379)
                      -.||.|-=+.||.|....      .+..+| +|+...                         ..+..    ..+|++.|+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~a-vKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECA-IKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEE-EEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            368999999999998543      235666 343211                         00112    348999999


Q ss_pred             hCCC--CCcceeeeecCcceEEeeC-Cch-h----h-HH---------------HHHHHH-hcccCCCCCCeEeCCCCCC
Q psy6046          54 LIKV--EPIEKYYSLDPEPLLGLNP-RPP-V----Y-QA---------------SATTKA-GSVLFPPLMDFIFFFLQPQ  108 (379)
Q Consensus        54 ~l~h--pnIv~~~~~~~~~~~v~e~-~g~-l----~-~~---------------~al~~l-h~~~~~h~~~ivHrDlkp~  108 (379)
                      ++..  -++...+.+ .+-+++||| +|. +    . +.               .++..+ |.      .||+|+||+|.
T Consensus        82 rl~~~Gv~vP~pi~~-~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~------~glVHGDLs~~  154 (197)
T cd05146          82 RMQKAGIPCPEVVVL-KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKE------CNLVHADLSEY  154 (197)
T ss_pred             HHHHcCCCCCeEEEe-cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHH
Confidence            9873  445555554 568899999 432 1    0 00               233333 45      99999999999


Q ss_pred             cEEEeecCCCCcEEEeecccceeec
Q psy6046         109 NLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus       109 Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      ||++.+    +.+.|+|||.+-...
T Consensus       155 NIL~~~----~~v~iIDF~qav~~~  175 (197)
T cd05146         155 NMLWHD----GKVWFIDVSQSVEPT  175 (197)
T ss_pred             HEEEEC----CcEEEEECCCceeCC
Confidence            999975    689999999987653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1243|consensus

Probab=98.65  E-value=1.1e-06  Score=87.53  Aligned_cols=134  Identities=12%  Similarity=0.036  Sum_probs=94.8

Q ss_pred             EEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC----------CchhhHH--
Q psy6046          21 RKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP----------RPPVYQA--   83 (379)
Q Consensus        21 ~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~----------~g~l~~~--   83 (379)
                      .|..+.++..+.+........  .+.+.+-++.|+.|+||+|++|++..++   .|+++|-          .|..+-.  
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~l~~~~v~~G  109 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKELGKEEVCLG  109 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHHhHHHHHHHH
Confidence            466677887776544433333  5668889999999999999999998765   7999998          2322222  


Q ss_pred             -----HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-ccccccCCCCc---------
Q psy6046          84 -----SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-IRELLGTPDYV---------  148 (379)
Q Consensus        84 -----~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-~~~~~gt~~y~---------  148 (379)
                           .|+.+||.     +.+++|++|.-+.++++..   |..||++|-.+........ .....---.|.         
T Consensus       110 l~qIl~AL~FL~~-----d~~lvHgNv~~~SVfVn~~---GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~  181 (690)
T KOG1243|consen  110 LFQILAALSFLND-----DCNLVHGNVCKDSVFVNES---GEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE  181 (690)
T ss_pred             HHHHHHHHHHHhc-----cCCeeeccEeeeeEEEcCC---CcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc
Confidence                 56777763     5899999999999999997   9999999998865543221 11111111122         


Q ss_pred             -ch---HHHHHHHHHhhC
Q psy6046         149 -GK---SLGVTAYVLLTG  162 (379)
Q Consensus       149 -aP---SlGvil~~lltg  162 (379)
                       ++   -|||+++++..|
T Consensus       182 ~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  182 WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cchhhhhHHHHHHHHhCc
Confidence             22   799999999998

>KOG3741|consensus

Probab=98.45  E-value=4.9e-06  Score=80.83  Aligned_cols=180  Identities=13%  Similarity=0.121  Sum_probs=127.4

Q ss_pred             eEEEEEEEcCCCcEEEEEEeccccc---chHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC---CchhhHH
Q psy6046          17 SSCSRKPEKTTKREVVQWKERNVSQ---GVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP---RPPVYQA   83 (379)
Q Consensus        17 G~V~~a~~~~tg~~~a~~k~~~~~~---~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~---~g~l~~~   83 (379)
                      .+-|+|....+|..|+.+++ +...   ......-+++++++.|+|+|++.+++..       ++++++|   .++|++.
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRl-hg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~  368 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRL-HGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDL  368 (655)
T ss_pred             ceeEeeeeccCCceeeeeee-ccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHH
Confidence            56899999999999996555 2211   1223456789999999999999887662       7888888   5666666


Q ss_pred             -----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          84 -----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        84 -----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                                                         .|+.++|+      .|+.-+=|.|.+|+++.+   ..++|...|+
T Consensus       369 ~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs------sGLAck~L~~~kIlv~G~---~RIriS~C~i  439 (655)
T KOG3741|consen  369 YFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS------SGLACKTLDLKKILVTGK---MRIRISGCGI  439 (655)
T ss_pred             HccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh------cCceeecccHhHeEeeCc---ceEEEecccc
Confidence                                               56788888      999999999999999975   5888888887


Q ss_pred             ceeeccCc--cccccccCCCCcchHHHHHHHHHhhCCCC-CCCCChHHH-HHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         129 SRVILDGI--EIRELLGTPDYVGKSLGVTAYVLLTGFSP-FGGETDSET-FRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       129 a~~~~~~~--~~~~~~gt~~y~aPSlGvil~~lltg~~P-f~~~~~~~~-~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ......+.  .... .....|.  .+|.++..|.||..- +......+. +..|.           +..|.+++++|.-+
T Consensus       440 ~Dvl~~d~~~~le~-~Qq~D~~--~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I~-----------~~yS~D~rn~v~yl  505 (655)
T KOG3741|consen  440 MDVLQEDPTEPLES-QQQNDLR--DLGLLLLALATGTENSNRTDSTQSSHLTRIT-----------TTYSTDLRNVVEYL  505 (655)
T ss_pred             eeeecCCCCcchhH-HhhhhHH--HHHHHHHHHhhcccccccccchHHHHHHHhh-----------hhhhHHHHHHHHHH
Confidence            76554332  0000 0000111  899999999999654 233333333 33332           24789999999999


Q ss_pred             cccCCCCCCCHHHHhcC
Q psy6046         205 LIKNPMERMTAKEALKH  221 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~h  221 (379)
                      ...++.+ -++.+++.|
T Consensus       506 ~s~~~~~-ksI~~llp~  521 (655)
T KOG3741|consen  506 ESLNFRE-KSIQDLLPM  521 (655)
T ss_pred             HhcCccc-ccHHHHHHH
Confidence            9999987 588888865

>KOG0601|consensus

Probab=98.39  E-value=2.6e-07  Score=90.87  Aligned_cols=204  Identities=13%  Similarity=0.019  Sum_probs=130.2

Q ss_pred             CcCCCCceEEEEEEEc-CCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEK-TTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~-~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      -||.|.|+.|+.+..+ .++..|++.-..+.    .+...-+.|+.+...+. |.+++.++..+..   .|+-.||  ++
T Consensus       272 ~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~  351 (524)
T KOG0601|consen  272 KISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGG  351 (524)
T ss_pred             EccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCc
Confidence            6899999999998766 56666774222221    22233567777777666 8899988776654   5666677  22


Q ss_pred             hhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccc-c
Q psy6046          79 PVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL-G  143 (379)
Q Consensus        79 ~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~-g  143 (379)
                      +.-..              .-.+.+-.+...|+..++|+|+||+||++...+  +..++.|||..+.+.-.  ..... .
T Consensus       352 s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~--~~~~~~~~~~~t~~~~~--~~~~~~~  427 (524)
T KOG0601|consen  352 SSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDG--FFSKLGDFGCWTRLAFS--SGVFHHI  427 (524)
T ss_pred             chhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccch--hhhhcccccccccccee--ccccccc
Confidence            22221              111112222224459999999999999999752  78899999998642111  11111 1


Q ss_pred             CCCC-cch---------------HHHHHHHHHhhCCCC-CCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         144 TPDY-VGK---------------SLGVTAYVLLTGFSP-FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       144 t~~y-~aP---------------SlGvil~~lltg~~P-f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +..| .+|               |+|..+++.++|.+- ..+.    ....|..+..+..+    +.+.++..+.+.++.
T Consensus       428 ~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~----~~~~i~~~~~p~~~----~~~~~~q~~~kv~~~  499 (524)
T KOG0601|consen  428 DRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV----QSLTIRSGDTPNLP----GLKLQLQVLLKVMIN  499 (524)
T ss_pred             ccccccchhhccccccccccccccccccccccccCcccCcccc----cceeeecccccCCC----chHHhhhhhhhhhcC
Confidence            2223 133               899999998888653 2222    23344455443332    345888899999999


Q ss_pred             cCCCCCCCHHHHhcCcccc
Q psy6046         207 KNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~  225 (379)
                      .++..|+.+.++..|+=|.
T Consensus       500 ~~~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  500 PDRKRRPSAVELSLHSEFY  518 (524)
T ss_pred             Cccccchhhhhhcccchhh
Confidence            9999999999998887653

>KOG1266|consensus

Probab=98.24  E-value=3.2e-07  Score=84.11  Aligned_cols=165  Identities=18%  Similarity=0.081  Sum_probs=104.9

Q ss_pred             HHHHhCCCCCcceeeeecCc--------ceEEeeC--CchhhHH------------------------HHHHHHhcccCC
Q psy6046          50 QLLKLIKVEPIEKYYSLDPE--------PLLGLNP--RPPVYQA------------------------SATTKAGSVLFP   95 (379)
Q Consensus        50 ~il~~l~hpnIv~~~~~~~~--------~~~v~e~--~g~l~~~------------------------~al~~lh~~~~~   95 (379)
                      .-|-++.|.|||++..++.+        ...+.||  .|.+-+.                        .|+.|||+    
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs----  194 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS----  194 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc----
Confidence            44556679999999888765        4567788  4444443                        56777776    


Q ss_pred             CCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-----ccccccccCCCCcch---------------HHHHH
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-----IEIRELLGTPDYVGK---------------SLGVT  155 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-----~~~~~~~gt~~y~aP---------------SlGvi  155 (379)
                      -+--|+|+++.+..|++..   ++-+|++---....-..-     .......+-++|.||               ++|..
T Consensus       195 ~~PpiihgnlTc~tifiq~---ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmc  271 (458)
T KOG1266|consen  195 CDPPIIHGNLTCDTIFIQH---NGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMC  271 (458)
T ss_pred             cCCccccCCcchhheeecC---CceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHH
Confidence            1345999999999999985   477777543222111100     011112355677777               88888


Q ss_pred             HHHHhhCCCC-CCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         156 AYVLLTGFSP-FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       156 l~~lltg~~P-f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+|..|..- -.+.+..+.-..+.+..+...       .+--++++.+||.-.|..||++.+++.||..-+..
T Consensus       272 AlemailEiq~tnseS~~~~ee~ia~~i~~le-------n~lqr~~i~kcl~~eP~~rp~ar~llfHpllfeVh  338 (458)
T KOG1266|consen  272 ALEMAILEIQSTNSESKVEVEENIANVIIGLE-------NGLQRGSITKCLEGEPNGRPDARLLLFHPLLFEVH  338 (458)
T ss_pred             HHHHHHheeccCCCcceeehhhhhhhheeecc-------CccccCcCcccccCCCCCCcchhhhhcCceeeecc
Confidence            8888877654 333333223233332222111       12236789999999999999999999999876554

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.23  E-value=1.1e-05  Score=71.73  Aligned_cols=120  Identities=13%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCC--CcceeeeecCc------ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVE--PIEKYYSLDPE------PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hp--nIv~~~~~~~~------~~~v~e~   76 (379)
                      +.||.|..+.||++.... |+.++ +|.....    ....+.+|..+++.+.+.  .+.+++.+..+      .++++|+
T Consensus         4 ~~l~~G~~n~~~~v~~~~-g~~~i-lK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~   81 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-GRRLV-LRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMER   81 (223)
T ss_pred             eecCCCccceEEEEEecC-CcceE-EEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEE
Confidence            368999999999998643 56666 5554432    245789999999999863  34556665433      5899999


Q ss_pred             --CchhhH-----------------H--HHHHHHhcccC-----------------------------------------
Q psy6046          77 --RPPVYQ-----------------A--SATTKAGSVLF-----------------------------------------   94 (379)
Q Consensus        77 --~g~l~~-----------------~--~al~~lh~~~~-----------------------------------------   94 (379)
                        ++.+..                 .  .++..||+.-.                                         
T Consensus        82 i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (223)
T cd05154          82 VDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLL  161 (223)
T ss_pred             eCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence              222211                 0  45666775311                                         


Q ss_pred             ---------CCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          95 ---------PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        95 ---------~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                               .-...++|+|+.|.||+++.+ ..+.+.|+||+.+..
T Consensus       162 ~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~-~~~~~~iID~e~~~~  206 (223)
T cd05154         162 RWLEAHLPADSRPGLVHGDYRLGNVLFHPD-EPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHhhCCCCCCcEEEECCCCcccEEEcCC-CCcEEEEEecccccc
Confidence                     013569999999999999873 115689999998853

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2137|consensus

Probab=98.19  E-value=1.2e-06  Score=87.57  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=96.0

Q ss_pred             HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---------ccc-cccCCCCcch---
Q psy6046          84 SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---------IRE-LLGTPDYVGK---  150 (379)
Q Consensus        84 ~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---------~~~-~~gt~~y~aP---  150 (379)
                      .|+.|+|.     +.++||++|.|++|.++..   +..||+.|+++........         ... ..-...|.||   
T Consensus       110 dgl~flh~-----sAk~VH~ni~p~~i~~na~---~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~  181 (700)
T KOG2137|consen  110 DGLAFLHR-----SAKVVHGNIQPEAIVVNAN---GDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYL  181 (700)
T ss_pred             chhhhhcc-----CcceeecccchhheeeccC---cceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhh
Confidence            67899997     5899999999999999985   8999999999865443211         000 1123457777   


Q ss_pred             ------------HHHHHHHHHh-hCCCCCCCCChHHHHHHHHhCCCCCC-cccccCCCHHHHHHHHHhcccCCCCCCCHH
Q psy6046         151 ------------SLGVTAYVLL-TGFSPFGGETDSETFRNISKAQLDFP-DELFEDISPEAKDFIAKILIKNPMERMTAK  216 (379)
Q Consensus       151 ------------SlGvil~~ll-tg~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  216 (379)
                                  |+|+.+|.+. .|+.-+.+.+...... ......... ...-.++++++++=|.++|..++..||++.
T Consensus       182 ~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~  260 (700)
T KOG2137|consen  182 LGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-FSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLD  260 (700)
T ss_pred             ccccccccccceeeeeEEEEEecCCcchhhccCCcchhh-hhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchh
Confidence                        9999999988 5666555443222211 111111111 011147899999999999999999999999


Q ss_pred             HHhcCccccCCc
Q psy6046         217 EALKHPWLMNKK  228 (379)
Q Consensus       217 e~l~hp~~~~~~  228 (379)
                      +++..|||.+..
T Consensus       261 ~l~~~~ff~D~~  272 (700)
T KOG2137|consen  261 LLLSIPFFSDPG  272 (700)
T ss_pred             hhhcccccCCch
Confidence            999999998754

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.11  E-value=1.4e-05  Score=67.70  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCcceEEeeC-Cc-hhhHH----
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGLNP-RP-PVYQA----   83 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~v~e~-~g-~l~~~----   83 (379)
                      .||+|++|.||+|.  ..|..+|++.......+..+..|+++|..+...++..=.+.+.+..+.||| .| .|...    
T Consensus        29 ~L~KG~~s~Vyl~~--~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~~~i~me~i~G~~L~~~~~~~  106 (201)
T COG2112          29 ELAKGTTSVVYLGE--WRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGEDFIRMEYIDGRPLGKLEIGG  106 (201)
T ss_pred             hhhcccccEEEEee--ccCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEechhhhhhhhhcCcchhhhhhcc
Confidence            79999999999998  666677755555556678899999999999988886644444444555999 33 33333    


Q ss_pred             ---HHHHHHhcccCCCCCCeEeCCCC-CCcEEEeecCCCCcEEEeecccceee
Q psy6046          84 ---SATTKAGSVLFPPLMDFIFFFLQ-PQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        84 ---~al~~lh~~~~~h~~~ivHrDlk-p~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                         .-+..+..-+.|...||-|..|. |...++..+   ..+-|+||--|+..
T Consensus       107 ~rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~---~~~~iIDFd~At~k  156 (201)
T COG2112         107 DRKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVND---RDVYIIDFDSATFK  156 (201)
T ss_pred             cHHHHHHHHHHHHHHHHhccchhhhcCCceeEEecC---CcEEEEEccchhhc
Confidence               11222222223445999999997 665555543   58999999998743

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.06  E-value=1.5e-05  Score=69.23  Aligned_cols=78  Identities=13%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCC--CcceeeeecCcceEEeeC-C--chhhHH-------------------H-HHHHHhcccCCCCC
Q psy6046          44 VIVDEEQLLKLIKVE--PIEKYYSLDPEPLLGLNP-R--PPVYQA-------------------S-ATTKAGSVLFPPLM   98 (379)
Q Consensus        44 ~~~~E~~il~~l~hp--nIv~~~~~~~~~~~v~e~-~--g~l~~~-------------------~-al~~lh~~~~~h~~   98 (379)
                      ...+|.+.|..+..-  ++.+.+.+ ..-+++||| +  |.....                   . ....+|.      .
T Consensus        54 ~~~~E~~~L~~l~~~Gv~vP~p~~~-~~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~------~  126 (188)
T PF01163_consen   54 WAKKEFRNLKRLYEAGVPVPKPYDY-NRNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHK------A  126 (188)
T ss_dssp             HHHHHHHHHHHCCCTT-SS--EEEE-ETTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHCCccCCcEEEE-eCCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHh------c
Confidence            378899999999965  45556654 367899999 3  322211                   1 1223455      9


Q ss_pred             CeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          99 DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        99 ~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||+|+||.+.||++++    +.+.++|||.+...
T Consensus       127 givHGDLs~~NIlv~~----~~~~iIDf~qav~~  156 (188)
T PF01163_consen  127 GIVHGDLSEYNILVDD----GKVYIIDFGQAVDS  156 (188)
T ss_dssp             TEEESS-STTSEEEET----TCEEE--GTTEEET
T ss_pred             CceecCCChhhEEeec----ceEEEEecCcceec
Confidence            9999999999999997    58999999998764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.97  E-value=4.2e-05  Score=69.15  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------------------------ccchHHHHHHHHHHhCCCC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------------------------SQGVVIVDEEQLLKLIKVE--PI   60 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------------------------~~~~~~~~E~~il~~l~hp--nI   60 (379)
                      +..||-|-=+.||.|.+. .|..+|+ |....                         -.+....+|.++|..|...  .+
T Consensus        96 G~~IGvGKEsdVY~~~~~-~g~~~~v-KfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          96 GTKIGVGKESDVYVAIDP-KGRKVAV-KFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             ccccccCccceEEEEECC-CCCEEEE-EEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            468999999999999976 5667763 32211                         0134478999999999744  45


Q ss_pred             ceeeeecCcceEEeeC--CchhhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeec
Q psy6046          61 EKYYSLDPEPLLGLNP--RPPVYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDF  126 (379)
Q Consensus        61 v~~~~~~~~~~~v~e~--~g~l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DF  126 (379)
                      .+.+++- .-+++||+  +-.|+..            ..+..+..   .-..||||+|+.+-||+++++   |.+.++||
T Consensus       174 P~P~~~n-RHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~---~~~~GiVHGDlSefNIlV~~d---g~~~vIDw  246 (304)
T COG0478         174 PKPIAWN-RHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRK---AYRRGIVHGDLSEFNILVTED---GDIVVIDW  246 (304)
T ss_pred             CCccccc-cceeeeehcccceeecccCcccCHHHHHHHHHHHHHH---HHHcCccccCCchheEEEecC---CCEEEEeC
Confidence            5544432 34677888  3333322            11111111   113899999999999999986   89999999


Q ss_pred             cccee
Q psy6046         127 EISRV  131 (379)
Q Consensus       127 G~a~~  131 (379)
                      --+..
T Consensus       247 PQ~v~  251 (304)
T COG0478         247 PQAVP  251 (304)
T ss_pred             ccccc
Confidence            76643

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.82  E-value=6.3e-05  Score=75.16  Aligned_cols=121  Identities=15%  Similarity=0.086  Sum_probs=78.5

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchH-----------------------------------------
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVV-----------------------------------------   44 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~-----------------------------------------   44 (379)
                      |...-||.+|-|.||+|+.++ |+.|| +|+....-.+.                                         
T Consensus       128 F~~~PiAsASIaQVH~A~L~s-G~~VA-VKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~E  205 (517)
T COG0661         128 FEPEPIASASIAQVHRAVLKS-GEEVA-VKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREE  205 (517)
T ss_pred             cCCCchhhhhHhhheeEEecC-CCEEE-EEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHH
Confidence            555689999999999999665 88888 67665532222                                         


Q ss_pred             --HHHHHHHHHhCC-----CCC--cceee-eecCcceEEeeC--CchhhHH----------------HHHHHHhcccCCC
Q psy6046          45 --IVDEEQLLKLIK-----VEP--IEKYY-SLDPEPLLGLNP--RPPVYQA----------------SATTKAGSVLFPP   96 (379)
Q Consensus        45 --~~~E~~il~~l~-----hpn--Iv~~~-~~~~~~~~v~e~--~g~l~~~----------------~al~~lh~~~~~h   96 (379)
                        +.+|...+..++     .|+  |.++| ++...-.++|||  |-.+.+.                .+-.++.+++   
T Consensus       206 lDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~---  282 (517)
T COG0661         206 LDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLL---  282 (517)
T ss_pred             hCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence              344444444443     122  12222 233446789999  3333333                1122222222   


Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      ..|+.|.|..|.||++..+   +.+.+.|||+...+..
T Consensus       283 ~dgffHaDpHpGNi~v~~~---g~i~~lDfGi~g~l~~  317 (517)
T COG0661         283 RDGFFHADPHPGNILVRSD---GRIVLLDFGIVGRLDP  317 (517)
T ss_pred             hcCccccCCCccceEEecC---CcEEEEcCcceecCCH
Confidence            2899999999999999997   8999999999987654

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.71  E-value=0.00036  Score=64.25  Aligned_cols=82  Identities=5%  Similarity=-0.062  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhCC-----CCCcceeeee-----cCcceEEeeC-Cch--hhHH----------------------HHHHH
Q psy6046          44 VIVDEEQLLKLIK-----VEPIEKYYSL-----DPEPLLGLNP-RPP--VYQA----------------------SATTK   88 (379)
Q Consensus        44 ~~~~E~~il~~l~-----hpnIv~~~~~-----~~~~~~v~e~-~g~--l~~~----------------------~al~~   88 (379)
                      .+.+|...+..|.     .|.+|-+...     ...-++++|+ .|.  +-+.                      ..+.-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            3778998887775     3444444322     2236789997 332  2111                      22344


Q ss_pred             HhcccCCCCCCeEeCCCCCCcEEEeec----CCCCcEEEeeccccee
Q psy6046          89 AGSVLFPPLMDFIFFFLQPQNLVMMGD----FPNCDIKVCDFEISRV  131 (379)
Q Consensus        89 lh~~~~~h~~~ivHrDlkp~Nill~~~----~~~~~ikl~DFG~a~~  131 (379)
                      ||      ..||+|+||+|+|||++.+    .....+.++||+.+..
T Consensus       154 LH------~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        154 MH------AAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HH------HCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            44      5999999999999999852    2246899999998853

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.65  E-value=0.00032  Score=67.00  Aligned_cols=123  Identities=17%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch-------------
Q psy6046          84 SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------  150 (379)
Q Consensus        84 ~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-------------  150 (379)
                      .|..-||.      .|.+-+|+.++|+|++++   +.+.|.|=..-....++......+|.+.|.+|             
T Consensus       128 ~aFA~lH~------~Gh~vGDVn~~~~lVsd~---~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r  198 (637)
T COG4248         128 SAFATLHE------HGHVVGDVNQNSFLVSDD---SKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFER  198 (637)
T ss_pred             HHHHHHHh------cCCcccccCccceeeecC---ceEEEEcccceeeccCCceEecccCccccCCHHHhccccccccCC
Confidence            44555666      999999999999999986   78888875443333344445556789999999             


Q ss_pred             -------HHHHHHHHHhhC-CCCCCCC-------ChHHHHHHHHhCC-----------CCCC-cccccCCCHHHHHHHHH
Q psy6046         151 -------SLGVTAYVLLTG-FSPFGGE-------TDSETFRNISKAQ-----------LDFP-DELFEDISPEAKDFIAK  203 (379)
Q Consensus       151 -------SlGvil~~lltg-~~Pf~~~-------~~~~~~~~i~~~~-----------~~~~-~~~~~~~s~~~~~li~~  203 (379)
                             .||++++++|.| +.||.|-       ++-+  ..|..+.           .+.| ...|.-+++++..|..+
T Consensus       199 ~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E--~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~q  276 (637)
T COG4248         199 TANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLE--TDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQ  276 (637)
T ss_pred             CccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcch--hhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHH
Confidence                   888999999886 9999752       1211  1222221           1222 12345689999999999


Q ss_pred             hcccC--CCCCCCHHH
Q psy6046         204 ILIKN--PMERMTAKE  217 (379)
Q Consensus       204 ~L~~d--P~~Rpt~~e  217 (379)
                      |+...  +.-|||++.
T Consensus       277 aF~~~~~~~~RP~a~a  292 (637)
T COG4248         277 AFTESGVATPRPTAKA  292 (637)
T ss_pred             HhcccCCCCCCCCHHH
Confidence            99753  568998654

>KOG0576|consensus

Probab=97.60  E-value=7.8e-06  Score=81.36  Aligned_cols=199  Identities=15%  Similarity=0.059  Sum_probs=124.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCC-cceeeeecCc---ceEEeeC--Cc--hhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEP-IEKYYSLDPE---PLLGLNP--RP--PVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~---~~~v~e~--~g--~l~   81 (379)
                      =+++|+++++++++...+....  .+.....  ....-++++|.+++||| .+.+++-.+.   .++.+++  +|  ...
T Consensus       249 ~fvK~altknpKkRptaeklL~--h~fvs~~--l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~  324 (829)
T KOG0576|consen  249 NFVKGALTKNPKKRPTAEKLLQ--HPFVSQT--LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSAL  324 (829)
T ss_pred             HHHHHHhcCCCccCCChhhhee--ceeeccc--hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccccc
Confidence            4788999999999866655433  3333332  44566889999999999 5555443322   5667777  22  000


Q ss_pred             HH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc
Q psy6046          82 QA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL  141 (379)
Q Consensus        82 ~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~  141 (379)
                      ..                    .++.++|+      .-=+|||    ||+..+    +..+.+||+....+......++.
T Consensus       325 ~~~~se~~~~~~~~~~~~r~et~~l~~l~~------~~~~~~d----~~l~s~----~~~~~~~~~v~~~L~~~~~~~t~  390 (829)
T KOG0576|consen  325 EMTVSEIALEQYQFAYPLRKETRPLAELHS------SYKVHRD----NILGSE----EEVKLLDFAVPPQLTRTMKPRTA  390 (829)
T ss_pred             cCChhhHhhhhhhhhhhhhhhccccccccc------ccccCcc----cccccc----cccccccccCCcccCcccccccC
Confidence            00                    34555555      4457888    888776    68999999999887766566778


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH-HHHHHhc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK-DFIAKIL  205 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~-~li~~~L  205 (379)
                      .+++.++||               ++|+-..+|.-|-+|-....  .....+-.+.-.+.-..-...++... ++...|+
T Consensus       391 ~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~P~--~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~  468 (829)
T KOG0576|consen  391 IGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSSPP--AVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCL  468 (829)
T ss_pred             CCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCCCc--cccCCCCCCCCccccchhhhcCcccccCCccccc
Confidence            899999999               55555556767777654311  11111111110000000001122222 4778899


Q ss_pred             ccCCCCCCCHHHHhcCccccCCc
Q psy6046         206 IKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..-|..|+....++.|.+|....
T Consensus       469 ~g~P~~pkv~mgacfsKvfngCp  491 (829)
T KOG0576|consen  469 NGLPPTPKVHMGACFSKVFNGCP  491 (829)
T ss_pred             CCCCCCCcchhhHHHHHHhccCc
Confidence            99999999999999999987643

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.60  E-value=0.0014  Score=63.68  Aligned_cols=67  Identities=16%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----------ccchHHHHHHHHHHhCC---CCCcceeeeecCc-ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----------SQGVVIVDEEQLLKLIK---VEPIEKYYSLDPE-PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----------~~~~~~~~E~~il~~l~---hpnIv~~~~~~~~-~~~v~   74 (379)
                      +-||-|.+..||++.....++.++ +|....          -..++...|.+.|+.+.   ...+.+++.+..+ .+++|
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svI-VKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D~~~~~lVM  110 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVI-VKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYDEELAVTVM  110 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEE-EEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEECCCCCEEEE
Confidence            368999999999999764434555 454221          12356788888888864   3457778888766 67899


Q ss_pred             eC
Q psy6046          75 NP   76 (379)
Q Consensus        75 e~   76 (379)
                      |+
T Consensus       111 E~  112 (401)
T PRK09550        111 ED  112 (401)
T ss_pred             ec
Confidence            98

>KOG1235|consensus

Probab=97.57  E-value=0.00037  Score=69.68  Aligned_cols=124  Identities=13%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccc----------------------------------hH------H
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQG----------------------------------VV------I   45 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~----------------------------------~~------~   45 (379)
                      |..+-||.-+.|.|++|+.+. |+.|| +|+....-.                                  +.      +
T Consensus       164 f~~~piaaASlaQVhrA~L~~-G~~Va-VKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF  241 (538)
T KOG1235|consen  164 FDEEPIAAASLAQVHRARLKN-GEDVA-VKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDF  241 (538)
T ss_pred             cCcchhhhcchhheEEEEecC-CCEEE-EEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcch
Confidence            566789999999999999776 88777 565544110                                  11      3


Q ss_pred             HHHHHHHH----hCCCCC------cceeeeec-CcceEEeeC--CchhhHH----------------HHHHHHhcccCCC
Q psy6046          46 VDEEQLLK----LIKVEP------IEKYYSLD-PEPLLGLNP--RPPVYQA----------------SATTKAGSVLFPP   96 (379)
Q Consensus        46 ~~E~~il~----~l~hpn------Iv~~~~~~-~~~~~v~e~--~g~l~~~----------------~al~~lh~~~~~h   96 (379)
                      .+|++...    .+.|-+      |.++|.-+ ..-.++|||  |..+.+.                ..-.|++.++.  
T Consensus       242 ~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~--  319 (538)
T KOG1235|consen  242 TKEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFK--  319 (538)
T ss_pred             HHHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHh--
Confidence            44443322    333444      33333333 236899999  5555544                22233333322  


Q ss_pred             CCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceeecc
Q psy6046          97 LMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVILD  134 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~~~  134 (379)
                       .|++|+|-.|.||++..+. ..+.+.+.|||+...+..
T Consensus       320 -~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  320 -TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             -cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence             8999999999999999542 357899999999877643

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.49  E-value=0.0014  Score=57.51  Aligned_cols=112  Identities=12%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-------------------chHHHHHHHHHHhCC------CCCccee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-------------------GVVIVDEEQLLKLIK------VEPIEKY   63 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-------------------~~~~~~E~~il~~l~------hpnIv~~   63 (379)
                      .+||+|+.-.||.--+..+  .+  +|+.....                   .....+|+.-...+.      +.+|.++
T Consensus         7 ~~i~~G~~R~cy~HP~dp~--~c--IKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    7 DLIAQGGERDCYQHPDDPN--LC--IKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             cccccCCCceEEECCCCCC--eE--EEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            4899999999998543322  22  34433332                   456788888777777      7889999


Q ss_pred             eeecCc---ceEEeeC----Cc----hhhHH---------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC
Q psy6046          64 YSLDPE---PLLGLNP----RP----PVYQA---------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP  117 (379)
Q Consensus        64 ~~~~~~---~~~v~e~----~g----~l~~~---------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~  117 (379)
                      |++.++   +-+++|.    .|    +|.++               ....||-.      ++|+.+|++|.||++...+.
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~~~~~~L~~f~~~l~~------~~Iv~~dl~~~NIv~~~~~~  156 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTEELRQALDEFKRYLLD------HHIVIRDLNPHNIVVQRRDS  156 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccHHHHHHHHHHHHHHHH------cCCeecCCCcccEEEEecCC
Confidence            999876   5566666    22    22222               33556666      99999999999999998754


Q ss_pred             CC-cEEEee-cccce
Q psy6046         118 NC-DIKVCD-FEISR  130 (379)
Q Consensus       118 ~~-~ikl~D-FG~a~  130 (379)
                      .. .+.|+| ||...
T Consensus       157 ~~~~lvlIDG~G~~~  171 (199)
T PF10707_consen  157 GEFRLVLIDGLGEKE  171 (199)
T ss_pred             CceEEEEEeCCCCcc
Confidence            44 678888 56543

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.37  E-value=0.0012  Score=58.35  Aligned_cols=85  Identities=13%  Similarity=0.007  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHhCCC-----CCcceeeee----cCcceEEeeC-Cc--hhhHH--------------------HHHHHH
Q psy6046          42 GVVIVDEEQLLKLIKV-----EPIEKYYSL----DPEPLLGLNP-RP--PVYQA--------------------SATTKA   89 (379)
Q Consensus        42 ~~~~~~E~~il~~l~h-----pnIv~~~~~----~~~~~~v~e~-~g--~l~~~--------------------~al~~l   89 (379)
                      .....+|...+..|..     |..+-+...    ....++++|. .|  +|.+.                    ..+.-|
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~l  134 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKL  134 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence            4568889888887763     444444332    1124778887 22  12221                    335555


Q ss_pred             hcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          90 GSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        90 h~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      |.      .||+|+|++|.|||++.++....+.++||+-++..
T Consensus       135 H~------~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  135 HD------AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HH------CcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            55      99999999999999998743357999999988653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.32  E-value=0.0021  Score=57.77  Aligned_cols=113  Identities=13%  Similarity=-0.052  Sum_probs=71.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCCC--cceeeeec---CcceEEeeC-Cchh-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVEP--IEKYYSLD---PEPLLGLNP-RPPV-   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpn--Iv~~~~~~---~~~~~v~e~-~g~l-   80 (379)
                      ..||+|..+.||+.    .|..++ +|.... .....+.+|.++++.+..-.  +.+.+.+.   ....++||+ .|.- 
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~V-lR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~   81 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWM-LKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRS   81 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEE-EEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccc
Confidence            36899999999984    244555 455443 33456899999998887332  23444443   235778888 4431 


Q ss_pred             ----hH--------H-----HHHHHHhcccC-------------------------------------CCCCCeEeCCCC
Q psy6046          81 ----YQ--------A-----SATTKAGSVLF-------------------------------------PPLMDFIFFFLQ  106 (379)
Q Consensus        81 ----~~--------~-----~al~~lh~~~~-------------------------------------~h~~~ivHrDlk  106 (379)
                          ..        .     ..+.-||++-.                                     .-...++|+|+.
T Consensus        82 ~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~  161 (226)
T TIGR02172        82 FSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQ  161 (226)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCC
Confidence                10        0     22333454200                                     012347899999


Q ss_pred             CCcEEEeecCCCCcEEEeecccce
Q psy6046         107 PQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus       107 p~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      |.||+++++   + +.++||+.+.
T Consensus       162 ~~Nii~~~~---~-~~iIDwe~a~  181 (226)
T TIGR02172       162 IGNLITSGK---G-TYWIDLGDFG  181 (226)
T ss_pred             CCcEEEcCC---C-cEEEechhcC
Confidence            999999875   5 9999999875

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.31  E-value=0.0016  Score=57.70  Aligned_cols=54  Identities=15%  Similarity=0.125  Sum_probs=40.0

Q ss_pred             CcceEEeeC--CchhhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          68 PEPLLGLNP--RPPVYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        68 ~~~~~v~e~--~g~l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      .+.++++||  |.++.+.            .++.-+|.      .|++|+|..|.|++++.    +.++++||+..+.
T Consensus       116 ~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~------~G~~HGD~hpgNFlv~~----~~i~iID~~~k~~  183 (229)
T PF06176_consen  116 SSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHK------HGFYHGDPHPGNFLVSN----NGIRIIDTQGKRM  183 (229)
T ss_pred             eEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHH------cCCccCCCCcCcEEEEC----CcEEEEECccccc
Confidence            346689999  4333221            34555555      99999999999999996    5699999987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.06  E-value=0.0064  Score=58.03  Aligned_cols=65  Identities=12%  Similarity=0.018  Sum_probs=43.4

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecc----------cccchHHHHHHHHHHhCC--CC-CcceeeeecCcc-eEEeeC
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERN----------VSQGVVIVDEEQLLKLIK--VE-PIEKYYSLDPEP-LLGLNP   76 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~----------~~~~~~~~~E~~il~~l~--hp-nIv~~~~~~~~~-~~v~e~   76 (379)
                      ||-|....||++.+...++.+++ |--.          .-...+...|...|+...  -| .+.++|.+..+. .++||+
T Consensus         3 igdGnlN~VfrV~~~~g~~svIV-KQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D~e~~~~vMEd   81 (370)
T TIGR01767         3 VGDGNLNLVFHVYDQEGDRAAIV-KQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFDTEMAVTVMED   81 (370)
T ss_pred             CCCCceEEEEEEEcCCCCeeEEE-EEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEccccceehHhh
Confidence            68899999999997543345553 3211          122355677888887766  34 467788887774 478887

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK09902 hypothetical protein; Provisional

Probab=97.05  E-value=0.004  Score=54.91  Aligned_cols=112  Identities=13%  Similarity=0.005  Sum_probs=70.7

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecc--------cccchHHHHHHHHHHhCCCCC--cceee--eecC-----cceEE
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERN--------VSQGVVIVDEEQLLKLIKVEP--IEKYY--SLDP-----EPLLG   73 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~--------~~~~~~~~~E~~il~~l~hpn--Iv~~~--~~~~-----~~~~v   73 (379)
                      =|+||.+.|++...  .|+.+.+++-.+        ......+.+|...++.|..-+  +.+..  +...     .-+++
T Consensus        26 ~~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LV  103 (216)
T PRK09902         26 YRRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLV  103 (216)
T ss_pred             cCCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEE
Confidence            47899999999763  333455333221        223567999999999887322  33322  2111     14566


Q ss_pred             ee-CC--chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          74 LN-PR--PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        74 ~e-~~--g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      +| ++  -+|.+.                      .++.-||.      .|+.|+|+-+.||+++.++ ...++++||--
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~------~Gv~Hgdly~khIll~~~g-~~~v~lIDlEk  176 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS------VNRQHGCCYVRHIYVKTEG-KAEAGFLDLEK  176 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH------CCCcCCCCCHhheeecCCC-CeeEEEEEhhc
Confidence            66 32  122111                      45666666      9999999999999998652 23599999987


Q ss_pred             cee
Q psy6046         129 SRV  131 (379)
Q Consensus       129 a~~  131 (379)
                      ++.
T Consensus       177 ~r~  179 (216)
T PRK09902        177 SRR  179 (216)
T ss_pred             cch
Confidence            754

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.86  E-value=0.0064  Score=58.79  Aligned_cols=67  Identities=15%  Similarity=0.061  Sum_probs=43.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEE------Eecc--cccchHHHHHHHHHHhCC--CC-CcceeeeecCc-ceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQW------KERN--VSQGVVIVDEEQLLKLIK--VE-PIEKYYSLDPE-PLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~------k~~~--~~~~~~~~~E~~il~~l~--hp-nIv~~~~~~~~-~~~v~e~   76 (379)
                      -||-|.-..||++.+...++.++++      ++..  .-..++..-|.++|+.+.  -| .+.++|.+..+ ..++||+
T Consensus        36 eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D~e~~~~vMEd  114 (409)
T PRK12396         36 EIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFDSVMNCCVMED  114 (409)
T ss_pred             EcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEECcHHhhHHHHh
Confidence            6899999999999974434455532      1111  122456778888888776  34 46678887766 3567777

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.86  E-value=0.015  Score=52.68  Aligned_cols=114  Identities=10%  Similarity=-0.045  Sum_probs=70.4

Q ss_pred             cCCCCc-eEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC-CchhhHH-
Q psy6046          11 GGNRAR-SSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP-RPPVYQA-   83 (379)
Q Consensus        11 lG~G~f-G~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~-~g~l~~~-   83 (379)
                      |-.|.. ..||+....  +..++ +|.........+.+|+.+++.+. +--+.+++.+...   .++++|+ .|..... 
T Consensus         6 ~~~g~~~~~v~~~~~~--~~~~~-vk~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~   82 (244)
T cd05150           6 VTEGQSGATVYRLDGK--NPGLY-LKIAPSGPTYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAAL   82 (244)
T ss_pred             cCCCCCcCeEEEEcCC--CCcEE-EEecCCCcccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHh
Confidence            334544 789999743  33344 56655543556788999999886 2224455555443   6888998 3321111 


Q ss_pred             --------------HHHHHHhcccC----------------------------------------------------CCC
Q psy6046          84 --------------SATTKAGSVLF----------------------------------------------------PPL   97 (379)
Q Consensus        84 --------------~al~~lh~~~~----------------------------------------------------~h~   97 (379)
                                    ..+.-||++-.                                                    ...
T Consensus        83 ~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (244)
T cd05150          83 WEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEED  162 (244)
T ss_pred             hcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCc
Confidence                          22333333200                                                    123


Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ..++|+|+.|.||+++.+   ..+.|+||+.+.
T Consensus       163 ~~l~HgD~~~~Nil~~~~---~~~~iIDwe~a~  192 (244)
T cd05150         163 LVVTHGDACLPNIIVDPG---KFSGFIDLGRLG  192 (244)
T ss_pred             eEEECCCCCCccEEEeCC---cEEEEEEccccc
Confidence            448999999999999974   567899999874

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.78  E-value=0.0051  Score=54.68  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc-cchHHHHHHHHHHhCCCCC--cceeeeecC------cceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS-QGVVIVDEEQLLKLIKVEP--IEKYYSLDP------EPLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-~~~~~~~E~~il~~l~hpn--Iv~~~~~~~------~~~~v~e~--~g   78 (379)
                      .|+.|..+.||++.... + .++ +|..... ....+.+|..+++.|....  +.+++....      ..+.++++  +.
T Consensus         4 ~l~~G~~n~~~~v~~~~-~-~~v-lK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~   80 (239)
T PF01636_consen    4 PLSGGFSNRVYRVTTDD-G-RYV-LKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGR   80 (239)
T ss_dssp             EEEESSSSEEEEEEETT-S-EEE-EEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSE
T ss_pred             cCCCCCeeeEEEEEECC-c-EEE-EEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEeccc
Confidence            57889999999998655 4 555 4554443 4567889999999887332  344444211      15778888  44


Q ss_pred             hhhH------H--------HHHHHHhcc---------------------------------------------------c
Q psy6046          79 PVYQ------A--------SATTKAGSV---------------------------------------------------L   93 (379)
Q Consensus        79 ~l~~------~--------~al~~lh~~---------------------------------------------------~   93 (379)
                      .+..      .        ..+.-||++                                                   .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (239)
T PF01636_consen   81 PLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALL  160 (239)
T ss_dssp             EHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhh
Confidence            4444      0        111122211                                                   0


Q ss_pred             C-CCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          94 F-PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        94 ~-~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      . -....++|+|+.|.||+++.+  ++.+.|+||+.+..
T Consensus       161 ~~~~~~~~~HgD~~~~Nil~~~~--~~~i~iID~e~a~~  197 (239)
T PF01636_consen  161 PKPLPPVLIHGDLHPGNILVDPS--DGRIGIIDFEDAGW  197 (239)
T ss_dssp             HCCSCEEEE-SS-SGGGEEEESS--TTEEEE--GTT-EE
T ss_pred             ccCCCcEEEEeccccccceeeec--cceeEEEecccceE
Confidence            0 145679999999999999932  25668999998854

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.76  E-value=0.011  Score=54.04  Aligned_cols=112  Identities=16%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecccccc---hHHHHHHHHHHhCCCCCc-ceeeeecCcceEEeeC-CchhhH---
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVSQG---VVIVDEEQLLKLIKVEPI-EKYYSLDPEPLLGLNP-RPPVYQ---   82 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~---~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~v~e~-~g~l~~---   82 (379)
                      +..|-.+.+|+..  .+|+.++ +|.......   ....+|..+++.+..-.+ .+++... +-++++|+ .|....   
T Consensus         4 ~~~G~tn~~y~~~--~~~~~~v-lR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~-~~~~v~e~i~G~~~~~~~   79 (256)
T TIGR02721         4 LSGGLTNRSWRIE--HPGISFV-WRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN-EHWLLVEWLEGEVITLDQ   79 (256)
T ss_pred             CCCcCcCCeEEEE--eCCccEE-EeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe-CCEEEEEeccCccccccc
Confidence            4457888999987  4555666 455433211   235789999999975433 3344444 35678888 222111   


Q ss_pred             --------H--HHHHHHhcccC------------------------------------C-----CCCCeEeCCCCCCcEE
Q psy6046          83 --------A--SATTKAGSVLF------------------------------------P-----PLMDFIFFFLQPQNLV  111 (379)
Q Consensus        83 --------~--~al~~lh~~~~------------------------------------~-----h~~~ivHrDlkp~Nil  111 (379)
                              .  ..+.-||++-.                                    .     -...++|+|+.|.||+
T Consensus        80 ~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil  159 (256)
T TIGR02721        80 FVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLV  159 (256)
T ss_pred             ccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcEE
Confidence                    1  23333343210                                    0     0235899999999999


Q ss_pred             EeecCCCCcEEEeecccce
Q psy6046         112 MMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus       112 l~~~~~~~~ikl~DFG~a~  130 (379)
                      ++.+   + +.|+||..|.
T Consensus       160 ~~~~---~-~~lIDwE~a~  174 (256)
T TIGR02721       160 VTPQ---G-LKLIDWEYAS  174 (256)
T ss_pred             EeCC---C-CEEEeccccC
Confidence            9874   3 7899999874

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.75  E-value=0.0085  Score=53.88  Aligned_cols=115  Identities=11%  Similarity=-0.042  Sum_probs=68.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc----------------------cchH-----HHHHHHHHHhCCCC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS----------------------QGVV-----IVDEEQLLKLIKVE--PI   60 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------------------~~~~-----~~~E~~il~~l~hp--nI   60 (379)
                      .|.+|--..||+|.. .++..+| +|+....                      ....     ..+|...|+++..-  .+
T Consensus        55 ~istGKEA~Vy~a~~-~~~~~~a-vKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrv  132 (268)
T COG1718          55 CISTGKEANVYLAET-GDGRYVA-VKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRV  132 (268)
T ss_pred             eecCCcceEEEeecc-CCCceEE-EEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            456677778999873 3345555 4443220                      0000     45677777776632  23


Q ss_pred             ceeeeecCcceEEeeC-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcE
Q psy6046          61 EKYYSLDPEPLLGLNP-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDI  121 (379)
Q Consensus        61 v~~~~~~~~~~~v~e~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~i  121 (379)
                      .+-+.+. +-.++||| +..-+.+                  ..+++++.+  .+..|+||+||+.-|||+.+    +.+
T Consensus       133 P~Pi~~~-~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l--~~~a~LVHgDLSEyNiL~~~----~~p  205 (268)
T COG1718         133 PEPIAFR-NNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRL--YKEAGLVHGDLSEYNILVHD----GEP  205 (268)
T ss_pred             CCceeec-CCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHH--HHhcCcccccchhhheEEEC----CeE
Confidence            3334333 35678888 2111111                  233444332  12389999999999999995    799


Q ss_pred             EEeecccceeec
Q psy6046         122 KVCDFEISRVIL  133 (379)
Q Consensus       122 kl~DFG~a~~~~  133 (379)
                      .++|||-|....
T Consensus       206 ~iID~~QaV~~~  217 (268)
T COG1718         206 YIIDVSQAVTID  217 (268)
T ss_pred             EEEECccccccC
Confidence            999999986653

>PLN02876 acyl-CoA dehydrogenase

Probab=96.72  E-value=0.014  Score=62.67  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             cCcCCCCceEEEEEEEcCCC--cEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCc--ceeeeecCc------ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTK--REVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPI--EKYYSLDPE------PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg--~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnI--v~~~~~~~~------~~~v~   74 (379)
                      ..|+.|.++.+|+......+  ..+|+.+....   .....+.+|.++|+.|. |+++  .+++.++.+      .|++|
T Consensus        44 ~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flVM  123 (822)
T PLN02876         44 SQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYIM  123 (822)
T ss_pred             EEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEEE
Confidence            36788999999998754432  34554443221   22356889999999996 6664  666666443      68999


Q ss_pred             eC
Q psy6046          75 NP   76 (379)
Q Consensus        75 e~   76 (379)
                      |+
T Consensus       124 E~  125 (822)
T PLN02876        124 EY  125 (822)
T ss_pred             Ee
Confidence            99

>PRK05231 homoserine kinase; Provisional

Probab=96.42  E-value=0.018  Score=54.36  Aligned_cols=31  Identities=23%  Similarity=0.129  Sum_probs=25.9

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ..|++|+|+.|.||+++.+   ...-|+||+.+.
T Consensus       186 p~~liHgD~~~~Nil~~~~---~~~~iIDf~~~~  216 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGD---RLSGFIDFYFAC  216 (319)
T ss_pred             CcccCCCCCCCCcEEEECC---ceEEEEeccccc
Confidence            4589999999999999863   445899999874

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.32  E-value=0.019  Score=53.57  Aligned_cols=115  Identities=11%  Similarity=-0.085  Sum_probs=70.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCC--cceeeee---------cCcceEEeeC-C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEP--IEKYYSL---------DPEPLLGLNP-R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpn--Iv~~~~~---------~~~~~~v~e~-~   77 (379)
                      .|..|.-..+|+...  .+..++ +|.........+..|+.+++.|.+-.  +.+.+..         ....+.++++ .
T Consensus        21 ~i~~G~~n~~y~v~~--~~~~~v-Lr~~~~~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~   97 (296)
T cd05153          21 GISAGIENTNYFVTT--DSGRYV-LTLFEKVSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEFLA   97 (296)
T ss_pred             cccCccccceEEEEe--CCCcEE-EEEcCCCChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEeCC
Confidence            677787789999863  333555 45554444567888999988886332  3333332         1124677777 2


Q ss_pred             chhhH--------H--HHHHHHhcccC-----------------------------------------------CCCCCe
Q psy6046          78 PPVYQ--------A--SATTKAGSVLF-----------------------------------------------PPLMDF  100 (379)
Q Consensus        78 g~l~~--------~--~al~~lh~~~~-----------------------------------------------~h~~~i  100 (379)
                      |....        .  .++.-||....                                               .-..++
T Consensus        98 G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l  177 (296)
T cd05153          98 GEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLPRGV  177 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCCCcC
Confidence            22110        0  23333332211                                               012579


Q ss_pred             EeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046         101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus       101 vHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|+|+.|.|++++++   +.+.|+||+.+.
T Consensus       178 ~HgD~~~~Nil~~~~---~~~~iIDfe~a~  204 (296)
T cd05153         178 IHADLFRDNVLFDGD---ELSGVIDFYFAC  204 (296)
T ss_pred             CccCcCcccEEEeCC---ceEEEeehhhhc
Confidence            999999999999974   567899999874

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.29  E-value=0.041  Score=49.55  Aligned_cols=32  Identities=25%  Similarity=0.127  Sum_probs=25.5

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..+++|+|+.|.|++++..   ....|+||+.+..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~---~i~giIDw~~a~~  194 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDG---RLSAVIDFGCLGV  194 (235)
T ss_pred             CceEEeCCCCCCcEEEECC---CEEEEEeCcccCc
Confidence            3458999999999999863   4457999998743

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=96.15  E-value=0.041  Score=51.72  Aligned_cols=31  Identities=29%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ..+++|+|+.+.|++++.+   +.+.|+||+.+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~---~~~~vIDfd~~~  216 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGD---SVKGVIDFYFAC  216 (307)
T ss_pred             CCccCCCCCCcCcEEEECC---ceEEEeeccccc
Confidence            4689999999999999874   556899999874

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.07  E-value=0.035  Score=48.66  Aligned_cols=110  Identities=13%  Similarity=0.014  Sum_probs=70.5

Q ss_pred             cCcCCCCc-eEEEEEEEcCCCcEEEEEEec---cc----------c-----------cchHHHHHHHHHHhCC---CCCc
Q psy6046           9 HVGGNRAR-SSCSRKPEKTTKREVVQWKER---NV----------S-----------QGVVIVDEEQLLKLIK---VEPI   60 (379)
Q Consensus         9 ~~lG~G~f-G~V~~a~~~~tg~~~a~~k~~---~~----------~-----------~~~~~~~E~~il~~l~---hpnI   60 (379)
                      +.||.|+- |.||++.  -.|+.|| +|..   ..          .           ....+..|.+...+|+   +.++
T Consensus        43 efLg~g~~~~~V~kv~--I~g~~YA-LKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~e~~  119 (207)
T PF13095_consen   43 EFLGHGSHDGYVFKVE--IDGRIYA-LKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGREGL  119 (207)
T ss_pred             eecCCCCceeEEEEEE--ECCeEEE-EEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccccCc
Confidence            38999999 9999998  5677888 4541   00          0           1124778888766666   4455


Q ss_pred             --ceeeeecC----c-----------------ceEEeeC--Cch-hhHHHHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          61 --EKYYSLDP----E-----------------PLLGLNP--RPP-VYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        61 --v~~~~~~~----~-----------------~~~v~e~--~g~-l~~~~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                        |+.++++.    .                 ..||.||  ... +.....-+.+..+..+|..||+-+|+++.|..   
T Consensus       120 ~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~~~~~~~~~~~~~dl~~~~k~gI~~~Dv~~~ny~---  196 (207)
T PF13095_consen  120 WAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDPPLQIRDIPQMLRDLKILHKLGIVPRDVKPRNYR---  196 (207)
T ss_pred             eEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCccccchhHHHHHHHHHHHHHHCCeeeccCcccccc---
Confidence              88888641    0                 2467787  222 22222333333333445599999999999987   


Q ss_pred             cCCCCcEEEeecccc
Q psy6046         115 DFPNCDIKVCDFEIS  129 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a  129 (379)
                           .-||+|||.+
T Consensus       197 -----~G~lvDfs~~  206 (207)
T PF13095_consen  197 -----GGKLVDFSSS  206 (207)
T ss_pred             -----CCEEEecccC
Confidence                 2378999864

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.03  E-value=0.066  Score=47.99  Aligned_cols=47  Identities=13%  Similarity=0.154  Sum_probs=34.4

Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcchHHHHHHHHHh
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLL  160 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aPSlGvil~~ll  160 (379)
                      .+++|+|+.|.||++++.  .+.+.++||-.|..           |.+.|   -+|+++.|+.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~--~~~~~lIDwe~a~~-----------~~~~~---Dla~~~~e~~  216 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEE--KNSVKFIDYEYAGY-----------NYRAF---DIANHFNEWA  216 (235)
T ss_pred             EEEEcCCCCcCcEEEeCC--CCCEEEEEcccCCc-----------Cchhe---eHHHHHHHHc
Confidence            469999999999999972  15799999988743           22222   6777777753

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.43  E-value=0.26  Score=48.10  Aligned_cols=64  Identities=14%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecc-----c-----ccchHHHHHHHHHHhCC---CCCcceeeeecCc-ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERN-----V-----SQGVVIVDEEQLLKLIK---VEPIEKYYSLDPE-PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-----~-----~~~~~~~~E~~il~~l~---hpnIv~~~~~~~~-~~~v~e   75 (379)
                      -||-|....||+..+.  +..++ +|...     .     -...+...|...|+.+.   ...+.++|.++.+ -+++||
T Consensus        39 eiggGn~N~VyrV~~~--~~svV-VKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~ded~~vlvME  115 (418)
T PLN02756         39 EVGDGNLNFVYIVVSS--SGSFV-IKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDRTMALIGMR  115 (418)
T ss_pred             EcCCCceeeEEEEEcC--CccEE-EEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECCCCCEEEEe
Confidence            6788999999998863  33455 44332     1     13455667777777765   2467788888876 577888


Q ss_pred             C
Q psy6046          76 P   76 (379)
Q Consensus        76 ~   76 (379)
                      +
T Consensus       116 ~  116 (418)
T PLN02756        116 Y  116 (418)
T ss_pred             e
Confidence            8

>KOG1035|consensus

Probab=95.34  E-value=0.066  Score=57.72  Aligned_cols=163  Identities=20%  Similarity=0.169  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhCCCCCcceeeeecCc-ceEE------eeC------Cchh-------------hHH---HHHHHHhcccCC
Q psy6046          45 IVDEEQLLKLIKVEPIEKYYSLDPE-PLLG------LNP------RPPV-------------YQA---SATTKAGSVLFP   95 (379)
Q Consensus        45 ~~~E~~il~~l~hpnIv~~~~~~~~-~~~v------~e~------~g~l-------------~~~---~al~~lh~~~~~   95 (379)
                      ...|...+..+.|+|++.++.+-.+ .+..      .++      .+.+             +..   .++.|+|.    
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~----  304 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLHS----  304 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHHH----
Confidence            5567778899999999999887432 2211      111      1111             111   67888888    


Q ss_pred             CCCCeEeCCCCCCcEEEeecCCCCcEEEe--ecccceeeccCccccccccCCCCcch-----------------HHHHHH
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFPNCDIKVC--DFEISRVILDGIEIRELLGTPDYVGK-----------------SLGVTA  156 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~~~~ikl~--DFG~a~~~~~~~~~~~~~gt~~y~aP-----------------SlGvil  156 (379)
                        ....|.-|..+-..-......+.+..+  ||+.++.............+..+.+|                 .+|...
T Consensus       305 --~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~  382 (1351)
T KOG1035|consen  305 --LSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLL  382 (1351)
T ss_pred             --hccceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHH
Confidence              544443333331111111122556666  88888776544333333333333333                 555555


Q ss_pred             HHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC-HHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         157 YVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS-PEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       157 ~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s-~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..+..|..+-...              ..+....+..+ ....+++.+|+.-++++|+++.+++.|||.+..
T Consensus       383 ~~~~~~~~i~~~~--------------~~~~~~l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~  440 (1351)
T KOG1035|consen  383 LQLSQGEDISEKS--------------AVPVSLLDVLSTSELLDALPKCLDEDSEERLSALELLTHPFLRFP  440 (1351)
T ss_pred             hhhhhcCcccccc--------------cchhhhhccccchhhhhhhhhhcchhhhhccchhhhhhchhcccc
Confidence            5555554331100              00111111122 267889999999999999999999999998754

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=94.18  E-value=0.54  Score=43.51  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ...++|+|+.|.||+++++  ....-|.||+.+..
T Consensus       184 ~~~lvHGD~~~~Nilv~~~--~~~~gviDWe~a~i  216 (276)
T cd05152         184 HTVLVHGDLHPGHILIDED--ARVTGLIDWTEAKV  216 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCC--CCEEEEECcHhccc
Confidence            3459999999999999863  13457999998854

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG1826|consensus

Probab=93.93  E-value=0.0072  Score=66.46  Aligned_cols=176  Identities=14%  Similarity=-0.025  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC--CchhhHH-------------HHHHHHhccc-----CCCC-
Q psy6046          44 VIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP--RPPVYQA-------------SATTKAGSVL-----FPPL-   97 (379)
Q Consensus        44 ~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~--~g~l~~~-------------~al~~lh~~~-----~~h~-   97 (379)
                      .+..|..-++...|++++..+.-...     .|..+++  .|.+|..             ....-+|++.     .+|+ 
T Consensus      1275 mll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~ 1354 (2724)
T KOG1826|consen 1275 MLLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSL 1354 (2724)
T ss_pred             hhhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhc
Confidence            35566666777889999887765432     5666766  6777777             2233334331     1331 


Q ss_pred             ----CCeEeCCCCCCcEEEeecCCCCcEEEeecccce-eeccCccccccccCCCCcch---------------HHHHHHH
Q psy6046          98 ----MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR-VILDGIEIRELLGTPDYVGK---------------SLGVTAY  157 (379)
Q Consensus        98 ----~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~-~~~~~~~~~~~~gt~~y~aP---------------SlGvil~  157 (379)
                          +--+|++||+-|.++...   ..+|++++|+.+ .-+.........+++.|++|               +.|+-+|
T Consensus      1355 tnlg~T~v~~~Lkf~lpmIVtn---y~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly 1431 (2724)
T KOG1826|consen 1355 TNLGNTNVSKSLKFTLPMIVTN---YNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLY 1431 (2724)
T ss_pred             ccCCccchhhhhhhhccceecC---CcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                227899999999999874   789999999998 33333345567788889998               5588889


Q ss_pred             HHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         158 VLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       158 ~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ....|..||........-..+..+.. +.-+  .-.|.++-.....+|-..-..||.-...+.-+.|.
T Consensus      1432 ~rs~~n~~fi~flq~~Lkgiidn~tf-~sIe--~l~pgdaNve~~~~Ll~K~~~rp~q~isls~d~~a 1496 (2724)
T KOG1826|consen 1432 LRSDGNAYFIFFLQPALKGIIDNHTF-FSIE--KLKPGDANVEALHRLLWKYMERPGQYISLSRDHFA 1496 (2724)
T ss_pred             HHhcccHHHHHHHHHHHcCccccccc-cccc--ccCCCcccHHHHHHHHHHhhhcchhhhhccccccc
Confidence            88888888743222222112222111 1111  11234444444555555566778777777766654

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=93.81  E-value=0.13  Score=44.71  Aligned_cols=83  Identities=22%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             HHHHHHHHhCCC-CCcceeeeecCcceEEeeC--Cchhh-------HH----------HHHHHHhcccCCC---CCCeEe
Q psy6046          46 VDEEQLLKLIKV-EPIEKYYSLDPEPLLGLNP--RPPVY-------QA----------SATTKAGSVLFPP---LMDFIF  102 (379)
Q Consensus        46 ~~E~~il~~l~h-pnIv~~~~~~~~~~~v~e~--~g~l~-------~~----------~al~~lh~~~~~h---~~~ivH  102 (379)
                      ..|.-+|+.+.+ +++.++++.+-++| +.|+  .++++       +.          .|++.|.-+..++   ...+.-
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~~~-v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~l   85 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGRFY-VVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYL   85 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCCEE-EEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            458889999997 68999999997755 5566  34332       11          4554444433333   344888


Q ss_pred             CCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046         103 FFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus       103 rDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      .|++|+|+-++++   +.+|++|...+...
T Consensus        86 cDv~~~nfgv~~~---~~lk~iDld~v~~~  112 (188)
T PF12260_consen   86 CDVSPDNFGVNDD---GRLKLIDLDDVFVE  112 (188)
T ss_pred             eecchHHeEEeCC---CcEEEEechhcchh
Confidence            9999999999975   89999999987544

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK10593 hypothetical protein; Provisional

Probab=93.23  E-value=1.6  Score=40.80  Aligned_cols=64  Identities=11%  Similarity=-0.025  Sum_probs=43.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCC---CCcceeeeecC------cceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKV---EPIEKYYSLDP------EPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~h---pnIv~~~~~~~------~~~~v~e~   76 (379)
                      -||.|..+.||+.... +++ ++ +|.... .....+..|...|+.|..   ..+.++++++.      ..+++||+
T Consensus        21 ~i~~G~~~~vy~~~~~-~~~-~~-~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~   94 (297)
T PRK10593         21 CISEQPYAALWALYDS-QGN-PM-PLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLER   94 (297)
T ss_pred             ecCCccceeEEEEEcC-CCC-EE-EEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEec
Confidence            6899999999998632 233 33 344333 234678999999998863   24566665432      27999999

>KOG2268|consensus

Probab=92.86  E-value=0.19  Score=47.27  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------------------------ccchHHHHHHHHHHhCCC--CCc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------------------------SQGVVIVDEEQLLKLIKV--EPI   60 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------------------------~~~~~~~~E~~il~~l~h--pnI   60 (379)
                      +.-||-|-=+-||.+-+. .|++.++ |....                         -.+-...+|...|+.|..  --+
T Consensus        97 GnqIGVGKESDIY~v~d~-~G~~~~l-K~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfpV  174 (465)
T KOG2268|consen   97 GNQIGVGKESDIYVVADE-EGNPLIL-KLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFPV  174 (465)
T ss_pred             ccccccccccceEEEecC-CCCchhH-HHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCCCC
Confidence            446888888889998754 3555552 22111                         012346789988888873  223


Q ss_pred             ceeeeecCcceEEeeC--C------------chhhHH--HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          61 EKYYSLDPEPLLGLNP--R------------PPVYQA--SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        61 v~~~~~~~~~~~v~e~--~------------g~l~~~--~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                      .+.++.. .-|++||+  +            ..+|+.  ..+.-|..      +|+||+|..-=||+++++   +.++++
T Consensus       175 PkpiD~~-RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~lm~~Iv~la~------~GlIHgDFNEFNimv~dd---~~i~vI  244 (465)
T KOG2268|consen  175 PKPIDHN-RHCVVMELVDGYPLRQVRHVEDPPTLYDDLMGLIVRLAN------HGLIHGDFNEFNIMVKDD---DKIVVI  244 (465)
T ss_pred             CCccccc-ceeeHHHhhcccceeeeeecCChHHHHHHHHHHHHHHHH------cCceecccchheeEEecC---CCEEEe
Confidence            3344332 24666666  2            334433  23444455      999999999999999976   889999


Q ss_pred             ecccc
Q psy6046         125 DFEIS  129 (379)
Q Consensus       125 DFG~a  129 (379)
                      ||--.
T Consensus       245 DFPQm  249 (465)
T KOG2268|consen  245 DFPQM  249 (465)
T ss_pred             echHh
Confidence            99754

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=92.76  E-value=1.3  Score=41.32  Aligned_cols=64  Identities=17%  Similarity=0.041  Sum_probs=41.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC--CCC-cceeeee---cCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK--VEP-IEKYYSL---DPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~--hpn-Iv~~~~~---~~~~~~v~e~   76 (379)
                      -+|-|....+|+..  .+++.+. +|.........+..|..-|+.|.  .+- +.+++.+   -...++++|+
T Consensus        24 ~v~GG~i~~a~~~~--~~~~~~F-vK~~~~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~   93 (288)
T PF03881_consen   24 PVSGGDINEAYRLD--TDGGSYF-VKVNSESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEF   93 (288)
T ss_dssp             EE--SSSSEEEEEE--TTS-EEE-EEEEEGGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE-
T ss_pred             ecCCCChhheEEEE--CCCccEE-EEecChhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEe
Confidence            46668889999987  5666666 56666555677899999999885  222 3344443   3347899999

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=91.36  E-value=0.1  Score=41.76  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=37.3

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI   55 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l   55 (379)
                      |...-||.|+.|.||+|+.+. |+.|| +|+....-.+.+...+.+|+.+
T Consensus        14 fd~~PlasASiaQVh~a~l~~-g~~Va-VKV~rP~i~~~i~~Dl~~l~~~   61 (119)
T PF03109_consen   14 FDPEPLASASIAQVHRARLKD-GEEVA-VKVQRPGIEEQIEADLRILRRL   61 (119)
T ss_pred             CCcchhhheehhhheeeeecc-cchhh-hhhcchHHHHHHHHHHHHHHHH
Confidence            555689999999999998654 87887 7888886666677777766654

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG1033|consensus

Probab=91.02  E-value=0.045  Score=53.84  Aligned_cols=59  Identities=12%  Similarity=0.087  Sum_probs=48.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP   68 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~   68 (379)
                      ..+|.|+||+|+.+.+..++..+|| |.+..    ....+..+|+.-+..+.||+++.+++.+.
T Consensus        55 ~~~~~~g~~~~~~~~n~~d~~~~av-kritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~  117 (516)
T KOG1033|consen   55 QCLGRGGFGVVFSAQNKADENKYAV-KRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWY  117 (516)
T ss_pred             ccccccCccccCCccccccchhhHH-HHhcccchhhhhhhhhccccchhhhcccchhhheecee
Confidence            4899999999999999988888884 44433    22456889999999999999999988764

>KOG2270|consensus

Probab=90.69  E-value=0.62  Score=44.66  Aligned_cols=82  Identities=13%  Similarity=-0.004  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhCCCCCcceeeeec-CcceEEeeC-CchhhHH------------------HHHHHHhcccCCCCCCeEeCC
Q psy6046          45 IVDEEQLLKLIKVEPIEKYYSLD-PEPLLGLNP-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFF  104 (379)
Q Consensus        45 ~~~E~~il~~l~hpnIv~~~~~~-~~~~~v~e~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrD  104 (379)
                      ...|++-|.+|+...|..---+. ..-.+||++ ++.=+.+                  ..+.++..+  -+..++||.|
T Consensus       213 AEKE~RNLkRl~~aGIP~PePIlLk~hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~l--Y~~c~LVHAD  290 (520)
T KOG2270|consen  213 AEKEMRNLKRLNNAGIPCPEPILLKNHVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRL--YQKCRLVHAD  290 (520)
T ss_pred             HHHHHHHHHHHHhcCCCCCCceeeecceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHH--HHHhceeccc
Confidence            56788888888754432211111 124578888 2111111                  223333221  2248899999


Q ss_pred             CCCCcEEEeecCCCCcEEEeecccceee
Q psy6046         105 LQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus       105 lkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      |.--|+|+-+    |.+.++|.+-+...
T Consensus       291 LSEfN~Lyhd----G~lyiIDVSQSVE~  314 (520)
T KOG2270|consen  291 LSEFNLLYHD----GKLYIIDVSQSVEH  314 (520)
T ss_pred             hhhhhheEEC----CEEEEEEccccccC
Confidence            9999999986    89999999988654

>smart00027 EH Eps15 homology domain

Probab=89.40  E-value=1  Score=34.29  Aligned_cols=56  Identities=7%  Similarity=0.027  Sum_probs=43.5

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +.+.+..+.++|..+|.+     |.|.++ .+++...+... ++...++++++..++.++++.
T Consensus         5 s~~~~~~l~~~F~~~D~d-----~~G~Is-~~el~~~l~~~-~~~~~ev~~i~~~~d~~~~g~   60 (96)
T smart00027        5 SPEDKAKYEQIFRSLDKN-----QDGTVT-GAQAKPILLKS-GLPQTLLAKIWNLADIDNDGE   60 (96)
T ss_pred             CHHHHHHHHHHHHHhCCC-----CCCeEe-HHHHHHHHHHc-CCCHHHHHHHHHHhcCCCCCC
Confidence            445666778999999999     899998 88888888775 347778888888887765443

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>PRK10271 thiK thiamine kinase; Provisional

Probab=88.68  E-value=0.39  Score=41.62  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ...+|+|+.|.|++++++   + ++|+||+.|..
T Consensus        77 ~~p~H~D~~~~N~~~~~~---~-~~lIDwe~a~~  106 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSAS---G-LRLIDWEYAGD  106 (188)
T ss_pred             eeeecCCCCCccEEEECC---C-EEEEeCCcccC
Confidence            457999999999999874   4 99999998854

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.57  E-value=0.37  Score=45.01  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=26.7

Q ss_pred             CCCeEeCCCCCCcEEEeec-CCCCcEEEeecccce
Q psy6046          97 LMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFEISR  130 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG~a~  130 (379)
                      ..+++|+|+.|.||+++.+ ...+.+.++||..|.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            4579999999999999862 001579999999884

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=87.81  E-value=1.3  Score=33.32  Aligned_cols=53  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             hhHHhHHhhhccc-cchhhcCCcccCChHHHHHHHHh-ccc-Cch-hhHHHHHHhcccCCCCC
Q psy6046         305 EKSLGDMAISLGR-SKEKLYGFKCLSKSQEVLNLYKS-MKD-INN-ICIDEIIKNINDNKGTW  363 (379)
Q Consensus       305 ~~~~~~~f~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~~-~~~~e~~~~~~~~~~~~  363 (379)
                      +..+.++|..+++ +     |.+.++ .+++...+.. ... +.. .+++++++.+|.|..+-
T Consensus         7 i~~l~~~F~~fd~~~-----~~g~i~-~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~   63 (89)
T cd05022           7 IETLVSNFHKASVKG-----GKESLT-ASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSK   63 (89)
T ss_pred             HHHHHHHHHHHhCCC-----CCCeEC-HHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCC
Confidence            4455677777777 6     777777 6666666666 433 233 56777777666655443

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=87.74  E-value=0.48  Score=44.34  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=25.5

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ..+++|+|+.+.||+++.    +.+.|+||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~----~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD----NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC----CcEEEEECcccc
Confidence            368999999999999986    467899999763

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PLN02236 choline kinase

Probab=87.60  E-value=0.55  Score=44.99  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +...++|+|+++.||+++++  ++.+.++||..|.
T Consensus       198 ~~~~~cH~Dl~~~Nil~~~~--~~~~~lID~Eya~  230 (344)
T PLN02236        198 QEIGFCHNDLQYGNIMIDEE--TRAITIIDYEYAS  230 (344)
T ss_pred             CCceEEeCCCCcCcEEEeCC--CCcEEEEeehhcc
Confidence            34579999999999999864  2679999998875

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=87.17  E-value=0.54  Score=41.06  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             CCCCeEeCCCCCCcEEEeecCC--CCcEEEeecccce
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFP--NCDIKVCDFEISR  130 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~  130 (379)
                      +...++|||+.+.|+++..+..  ...+.++||..++
T Consensus       118 ~~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      118 EFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             CceEEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            3467999999999999986421  1268999999875

subfamily of choline kinases

>KOG1093|consensus

Probab=86.70  E-value=2  Score=43.12  Aligned_cols=162  Identities=17%  Similarity=0.086  Sum_probs=98.4

Q ss_pred             chHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC-CchhhHHHHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC
Q psy6046          42 GVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP-RPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF  116 (379)
Q Consensus        42 ~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~-~g~l~~~~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~  116 (379)
                      ..+++-...+++.+.|+|...+.++..    ...+|+|+ +-++++......+.. ..+-.+|+.|-             
T Consensus        26 s~~ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~~~Sled~~~~~~l~~-~s~~~~~~~~~-------------   91 (725)
T KOG1093|consen   26 SIQILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHYTMSLEDILKTGNLKD-ESLLAHGVLHL-------------   91 (725)
T ss_pred             HHHHhhhhHHHHhhcCccceeeEeeecCccceEEEEehhhccchHHHHHhcccch-hhhccccccee-------------
Confidence            456788889999999999999988754    37788999 667776522222111 00001333221             


Q ss_pred             CCCcEEEeecccceeeccCccccccccCCCCcchHHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc--------c
Q psy6046         117 PNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD--------E  188 (379)
Q Consensus       117 ~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aPSlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~--------~  188 (379)
                        +.++.+| -++..   .   .+..| |.|--=|+|.++.++.-|...|......+....+.+-......        .
T Consensus        92 --~~~~~td-~~~t~---~---~~~~~-pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~  161 (725)
T KOG1093|consen   92 --NIIYITD-HFLTK---Y---PSPIG-PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHL  161 (725)
T ss_pred             --hhhhccc-ccccc---C---CCCCC-cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence              2233344 11110   0   11111 1110009999999999998888766665555555442211100        0


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..-.++.-...+..+|+...|..||...++++++-|...
T Consensus       162 ~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  162 IQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHH
Confidence            112356777889999999999999999999999999765

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=85.86  E-value=0.68  Score=26.87  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             hHHHHHHHHhcccCchhhHHHHHHhc
Q psy6046         331 SQEVLNLYKSMKDINNICIDEIIKNI  356 (379)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~e~~~~~  356 (379)
                      ..++++.+|.++| |.++++||..-+
T Consensus         2 ~~~~F~~~D~d~d-G~I~~~Ef~~~~   26 (29)
T PF00036_consen    2 LKEAFREFDKDGD-GKIDFEEFKEMM   26 (29)
T ss_dssp             HHHHHHHHSTTSS-SEEEHHHHHHHH
T ss_pred             HHHHHHHHCCCCC-CcCCHHHHHHHH

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=85.16  E-value=0.65  Score=40.90  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CCeEeCCCCCCcEEE-eecCCCCcEEEeeccccee
Q psy6046          98 MDFIFFFLQPQNLVM-MGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        98 ~~ivHrDlkp~Nill-~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..+.|.||.|.||++ +.   ++.++++||-.|..
T Consensus       143 ~v~cHnDl~~~Nil~~~~---~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNK---DGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSS---SSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccC---CCeEEEecHHHHhh
Confidence            568999999999999 33   38999999999865

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=85.00  E-value=2  Score=29.73  Aligned_cols=47  Identities=15%  Similarity=0.068  Sum_probs=36.4

Q ss_pred             HHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         310 DMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       310 ~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +.|..+|.+     +.|.++ .+++...+...+- ...+++++++.++.++++-
T Consensus         3 ~~F~~~D~~-----~~G~i~-~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~   49 (67)
T cd00052           3 QIFRSLDPD-----GDGLIS-GDEARPFLGKSGL-PRSVLAQIWDLADTDKDGK   49 (67)
T ss_pred             HHHHHhCCC-----CCCcCc-HHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCc
Confidence            678888988     888888 8888888877643 6777888888888766443

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=84.39  E-value=0.8  Score=43.54  Aligned_cols=30  Identities=23%  Similarity=0.192  Sum_probs=25.5

Q ss_pred             eEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046         100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus       100 ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +||+|+.|.|++++.+.  ..+.+.|||-+..
T Consensus       199 iIH~D~~~~NVl~d~~~--~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDT--DVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCC--CeeeEEEcccccc
Confidence            99999999999999862  2589999998853

>COG4857 Predicted kinase [General function prediction only]

Probab=84.34  E-value=3.9  Score=37.76  Aligned_cols=66  Identities=9%  Similarity=-0.103  Sum_probs=39.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----------ccchHHHHHHHHHHhCC--CCCcceeeeecCc--ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----------SQGVVIVDEEQLLKLIK--VEPIEKYYSLDPE--PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----------~~~~~~~~E~~il~~l~--hpnIv~~~~~~~~--~~~v~e   75 (379)
                      -||-|..-.||.+..+..|+..++ |-...          -...+..-|..+|+.-.  -|+.|.=++++.+  ..++||
T Consensus        37 EIGDGNlNyvF~V~~~~~~ka~iv-KQA~py~r~vGeswPL~l~Rs~iE~~aL~rq~~~aPh~VPeIyf~De~mavivME  115 (408)
T COG4857          37 EIGDGNLNYVFIVEGKIGGKAAIV-KQALPYVRLVGESWPLPLKRSFIEYHALRRQNARAPHFVPEIYFFDEIMAVIVME  115 (408)
T ss_pred             EecCCceeEEEEEecCCCCeehhh-hhhhhHHHhcCCcCCCcchHHHHHHHHHHHhhccCCCCcceeEeecchhhhhhHh
Confidence            488999999999998888766543 32111          11233445665555543  6887774444433  345677


Q ss_pred             C
Q psy6046          76 P   76 (379)
Q Consensus        76 ~   76 (379)
                      +
T Consensus       116 d  116 (408)
T COG4857         116 D  116 (408)
T ss_pred             h
Confidence            6

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=84.33  E-value=2.6  Score=33.46  Aligned_cols=56  Identities=20%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCCCc
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPS  365 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  365 (379)
                      +......+.-.|..+|.|     |+|.++ .+|+...+  ... .+.+++.|++.+|-|+.+-+|
T Consensus        43 ~~~~~~~l~w~F~~lD~d-----~DG~Ls-~~EL~~~~--l~~-~e~~~~~f~~~~D~n~Dg~IS   98 (116)
T cd00252          43 YPMCKDPVGWMFNQLDGN-----YDGKLS-HHELAPIR--LDP-NEHCIKPFFESCDLDKDGSIS   98 (116)
T ss_pred             hHHHHHHHHHHHHHHCCC-----CCCcCC-HHHHHHHH--ccc-hHHHHHHHHHHHCCCCCCCCC
Confidence            455667778999999999     999999 88888765  222 466777888888877776665

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		2e-26
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		3e-25
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		3e-25
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-25
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		7e-25
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		1e-24
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		1e-24
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-23
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-23
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		3e-23
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-23
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		4e-23
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		5e-23
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		5e-23
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		5e-23
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		5e-23
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		5e-23
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		5e-23
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		5e-23
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		6e-23
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		6e-23
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		7e-23
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		1e-22
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		1e-22
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		5e-21
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-20
2jam_B	304	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-19
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		3e-19
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-19
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		1e-18
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-18
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-18
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-18
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-18
3soa_A	444	Full-Length Human Camkii Length = 444		4e-18
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		5e-18
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		5e-18
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		7e-18
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		7e-18
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		8e-18
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		1e-17
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-17
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-17
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		4e-17
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		4e-17
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		5e-17
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		1e-16
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		5e-16
3kk9_A	282	Camkii Substrate Complex B Length = 282		5e-16
3kk8_A	284	Camkii Substrate Complex A Length = 284		5e-16
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-15
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		3e-15
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		3e-15
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-15
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		3e-15
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		3e-15
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		4e-15
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		5e-15
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-15
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		9e-15
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-14
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		6e-13
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		7e-13
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		1e-12
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		2e-12
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-12
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-12
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-12
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-12
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-12
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		4e-12
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		5e-12
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		6e-12
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		7e-12
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-12
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		9e-12
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		9e-12
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-11
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-11
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-11
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-11
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-11
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-11
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-11
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		1e-11
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-11
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		2e-11
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		2e-11
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-11
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		2e-11
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-11
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		3e-11
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		3e-11
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		3e-11
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		3e-11
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		3e-11
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		3e-11
2oza_A	356	Structure Of P38alpha Complex Length = 356		3e-11
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		3e-11
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		3e-11
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		3e-11
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		3e-11
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		5e-11
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		5e-11
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		7e-11
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		7e-11
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		8e-11
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		8e-11
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		8e-11
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		8e-11
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		8e-11
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		9e-11
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		9e-11
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		9e-11
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		9e-11
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		9e-11
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-10
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-10
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		2e-10
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-10
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-10
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-10
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		3e-10
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		6e-10
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		7e-10
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		9e-10
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		1e-09
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		1e-09
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		1e-09
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		1e-09
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		1e-09
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		1e-09
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		1e-09
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-09
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-09
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		5e-09
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		5e-09
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		5e-09
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		5e-09
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		8e-09
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		1e-08
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		1e-08
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		1e-08
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-08
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		3e-08
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		5e-08
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		6e-08
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-07
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		3e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-07
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		4e-07
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		4e-07
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		5e-07
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		5e-07
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		5e-07
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		5e-07
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		5e-07
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		6e-07
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		7e-07
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-07
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		9e-07
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		9e-07
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		1e-06
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		1e-06
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		5e-06
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		5e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		5e-06
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		6e-06
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-06
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		6e-06
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-06
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		7e-06
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		7e-06
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		7e-06
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		7e-06
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-06
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		9e-06
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		9e-06
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-05
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		1e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-05
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-05
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		1e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		1e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		1e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		1e-05
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		1e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		1e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		1e-05
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		2e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-05
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		2e-05
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		2e-05
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-05
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-05
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-05
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		2e-05
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		3e-05
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		3e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		4e-05
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		4e-05
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		6e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		6e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		7e-05
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		9e-05
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		9e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		1e-04
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		1e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		1e-04
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		2e-04
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		3e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		9e-04

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 27/211 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N +K   + R  L 
Sbjct: 259 KETRKRLTIQEALRHPWITPVDTQQAMVR-----RESVV----NLENFKKQYVRRRWKLS 309
Query: 265 EKVISASKLQQENLRKSALLKYNKTRRLCES 295
             ++S       +L K   L+ ++  R CES
Sbjct: 310 FSIVSLCNHLTRSLMKKVHLRTSEDLRNCES 340

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 27/185 (14%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N RK   + R  L 
Sbjct: 259 KETRKRLTIQEALRHPWITPVDNQQAMVR-----RESVV----NLENFRKQYVRRRSKLA 309
Query: 265 EKVIS 269
             ++S
Sbjct: 310 FSIVS 314

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 27/185 (14%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N RK   + R  L 
Sbjct: 259 KETRKRLTIQEALRHPWITPVDNQQAMVR-----RESVV----NLENFRKQYVRRRSKLA 309
Query: 265 EKVIS 269
             ++S
Sbjct: 310 FSIVS 314

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 15/141 (10%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           + +   L+PQN+++   +P  DIK+ DF +SR I    E+RE++GTP+Y+          
Sbjct: 151 NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPI 210
Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E F  +S  A DFI  
Sbjct: 211 TTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQS 270
Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+KNP +R TA+  L H WL
Sbjct: 271 LLVKNPEKRPTAEICLSHSWL 291

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 27/185 (14%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           K   +R+T +EAL+HPW+  ++ +Q M R       S++    N +N RK   + R  L 
Sbjct: 259 KETRKRLTIQEALRHPWITPVDNQQAMVR-----RESVV----NLENFRKQYVRRRWKLS 309
Query: 265 EKVIS 269
             ++S
Sbjct: 310 FSIVS 314

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTR 233
           K   +R+T +EAL+HPW+  ++ +Q M R
Sbjct: 259 KETRKRLTIQEALRHPWITPVDNQQAMVR 287

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLV 258
Query: 207 KNPMERMTAKEALKHPWL--MNKKQIMTR 233
           K   +R+T +EAL+HPW+  ++ +Q M R
Sbjct: 259 KETRKRLTIQEALRHPWITPVDNQQAMVR 287

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWLMNK--KQIMTR 233
           K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 258 KDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + PN  IK+ DF I+  I  G E + + GTP++V             
Sbjct: 132 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLE 191
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF GET  ET  NIS    DF +E F + S  AKDFI ++L+
Sbjct: 192 ADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLV 251
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P  RMT  ++L+H W+
Sbjct: 252 KDPKRRMTIAQSLEHSWI 269

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWLMNK--KQIMTR 233
           K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 258 KDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWLMNK--KQIMTR 233
           K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 258 KDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWLMNK--KQIMTR 233
           K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 258 KDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP +V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPAFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWLMNK--KQIMTR 233
           K+P +RMT +++L+HPW+  K  +Q ++R
Sbjct: 258 KDPKKRMTIQDSLQHPWIKPKDTQQALSR 286

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 137 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 196
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 197 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 256
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 257 KDPKKRMTIQDSLQHPWI 274

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 137 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 196
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 197 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 256
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 257 KDPKKRMTIQDSLQHPWI 274

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + P   IK+ DF ++  I  G E + + GTP++V             
Sbjct: 138 FDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 197
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+
Sbjct: 198 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV 257
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P +RMT +++L+HPW+
Sbjct: 258 KDPKKRMTIQDSLQHPWI 275

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + PN  IK+ DF I+  I  G E + + GTP++V             
Sbjct: 153 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLE 212
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF GET  ET  NIS    DF +E F + S  AKDFI ++L+
Sbjct: 213 ADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLV 272
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P  RM   ++L+H W+
Sbjct: 273 KDPKRRMXIAQSLEHSWI 290

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 16/138 (11%)
Query: 103 FFLQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------- 150
           F L+P+N++++  + PN  IK+ DF I+  I  G E + + GTP++V             
Sbjct: 139 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               S+GV  Y+LL+G SPF GET  ET  NIS    DF +E F + S  AKDFI ++L+
Sbjct: 199 ADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLV 258
Query: 207 KNPMERMTAKEALKHPWL 224
           K+P  RM   ++L+H W+
Sbjct: 259 KDPKRRMXIAQSLEHSWI 276

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 22/149 (14%)
Query: 98  MDFIFFFLQPQNLVMMGDFPNCD---IKVCDFEISRVILDGIEIRELLGTPDYVGK---- 150
           M  +   L+P+N++ +    N D   IK+ DF ++R      +++   GTP+++      
Sbjct: 206 MYILHLDLKPENILCV----NRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVN 261
Query: 151 -----------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
                      S+GV AY+LL+G SPF G+ D+ET  NI   + D  DE F+DIS EAK+
Sbjct: 262 YDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKE 321
Query: 200 FIAKILIKNPMERMTAKEALKHPWLMNKK 228
           FI+K+LIK    R++A EALKHPWL + K
Sbjct: 322 FISKLLIKEKSWRISASEALKHPWLSDHK 350

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 86  TTKAGSVLFPPLMDFIFFF---------LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI 136
           T K  S L   ++D +++          L+P+NL+         I + DF +S++   G 
Sbjct: 118 TEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD 177
Query: 137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA 181
            +    GTP YV                 S+GV AY+LL G+ PF  E DS+ F  I KA
Sbjct: 178 VMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKA 237
Query: 182 QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPS 241
           + +F    ++DIS  AKDFI  ++ K+P +R T ++A +HPW+     +   +  S    
Sbjct: 238 EYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQ 297
Query: 242 IIQN 245
           I +N
Sbjct: 298 IRKN 301

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 16/141 (11%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-- 150
           +++   L+P+N++      N ++K+ DF ++  +     ++   GT ++       GK  
Sbjct: 169 NYVHLDLKPENIMFTTKRSN-ELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPV 227
Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GV +Y+LL+G SPFGGE D ET RN+     +  D  F  IS + KDFI K
Sbjct: 228 GYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRK 287
Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+ +P  RMT  +AL+HPWL
Sbjct: 288 LLLADPNTRMTIHQALEHPWL 308

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 16/141 (11%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-- 150
           +++   L+P+N++      N ++K+ DF ++  +     ++   GT ++       GK  
Sbjct: 275 NYVHLDLKPENIMFTTKRSN-ELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPV 333
Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S+GV +Y+LL+G SPFGGE D ET RN+     +  D  F  IS + KDFI K
Sbjct: 334 GYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRK 393
Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L+ +P  RMT  +AL+HPWL
Sbjct: 394 LLLADPNTRMTIHQALEHPWL 414

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 17/148 (11%)
Query: 103 FFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------------ 150
           F ++P+N++      +  IK+ +F  +R +  G   R L   P+Y               
Sbjct: 126 FDIRPENIIYQTR-RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTAT 184
Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK 207
              SLG   YVLL+G +PF  ET+ +   NI  A+  F +E F++IS EA DF+ ++L+K
Sbjct: 185 DMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVK 244
Query: 208 NPMERMTAKEALKHPWLMNK-KQIMTRV 234
               RMTA EAL+HPWL  K +++ T+V
Sbjct: 245 ERKSRMTASEALQHPWLKQKIERVSTKV 272

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL+      +  I + DF +S++   G  +    GTP YV                
Sbjct: 142 LKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDC 201
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV AY+LL G+ PF  E D++ F  I KA+ +F    ++DIS  AKDFI  ++ K+P
Sbjct: 202 WSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDP 261
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
            +R T ++AL+HPW+     +   +  S       ++Q KKN  K  SK ++A 
Sbjct: 262 EKRFTCEQALQHPWIAGDTALDKNIHQSV------SEQIKKNFAK--SKWKQAF 307

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           ++GV  YVLL+G SPF GE D ET +N+ +   +F ++ F  +SPEAKDFI  +L K P 
Sbjct: 235 AIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPR 294
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKY 255
           +R+T  +AL+HPWL      +T    S  PS   N+  +K   KY
Sbjct: 295 KRLTVHDALEHPWLKGDHSNLT----SRIPSSRYNKIRQKIKEKY 335

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL+      +  I + DF +S++   G  +    GTP YV                
Sbjct: 142 LKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDC 201
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV AY+LL G+ PF  E D++ F  I KA+ +F    ++DIS  AKDFI  ++ K+P
Sbjct: 202 WSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDP 261
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
            +R T ++AL+HPW+     +   +  S       ++Q KKN  K  SK ++A 
Sbjct: 262 EKRFTCEQALQHPWIAGDTALDKNIHQSV------SEQIKKNFAK--SKWKQAF 307

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL+      +  I + DF +S++   G  +    GTP YV                
Sbjct: 142 LKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDC 201
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV AY+LL G+ PF  E D++ F  I KA+ +F    ++DIS  AKDFI  ++ K+P
Sbjct: 202 WSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDP 261
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
            +R T ++AL+HPW+     +   +  S       ++Q KKN  K  SK ++A 
Sbjct: 262 EKRFTCEQALQHPWIAGDTALDKNIHQSV------SEQIKKNFAK--SKWKQAF 307

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 91  SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR--ELLGTPDYV 148
           +VL    M  +   L+P+NL++        +K+ DF ++ + ++G +       GTP Y+
Sbjct: 122 AVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLA-IEVEGEQQAWFGFAGTPGYL 180
Query: 149 ----------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI 193
                     GK     + GV  Y+LL G+ PF  E     ++ I     DFP   ++ +
Sbjct: 181 SPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTV 240
Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLR 253
           +PEAKD I K+L  NP +R+TA EALKHPW+ ++         S+  S +  Q+    L+
Sbjct: 241 TPEAKDLINKMLTINPSKRITAAEALKHPWISHR---------STVASCMHRQETVDCLK 291
Query: 254 KYLSKSR 260
           K+ ++ +
Sbjct: 292 KFNARRK 298

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 37/192 (19%)
Query: 91  SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE-------LLG 143
           +VL    M  +   L+P+NL++        +K+ DF ++      IE+           G
Sbjct: 133 AVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLA------IEVEGEQQAWFGFAG 186
Query: 144 TPDYV----------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE 188
           TP Y+          GK     + GV  Y+LL G+ PF  E     ++ I     DFP  
Sbjct: 187 TPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSP 246
Query: 189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            ++ ++PEAKD I K+L  NP +R+TA EALKHPW+ ++         S+  S +  Q+ 
Sbjct: 247 EWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHR---------STVASCMHRQET 297
Query: 249 KKNLRKYLSKSR 260
              L+K+ ++ +
Sbjct: 298 VDCLKKFNARRK 309

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL+      +  I + DF +S++   G  +    GTP YV                
Sbjct: 142 LKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDC 201
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV AY+LL G+ PF  E D++ F  I KA+ +F    ++DIS  AKDFI  ++ K+P
Sbjct: 202 WSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDP 261
Query: 210 MERMTAKEALKHPWL 224
            +R T ++AL+HPW+
Sbjct: 262 EKRFTCEQALQHPWI 276

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+NL++        +K+ DF ++  V  D        GTP Y+          GK   
Sbjct: 129 LKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVD 188
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             + GV  Y+LL G+ PF  E     ++ I     DFP   ++ ++PEAKD I K+L  N
Sbjct: 189 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTIN 248
Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR 260
           P +R+TA EALKHPW+  +         S+  S++  Q+    L+K+ ++ +
Sbjct: 249 PAKRITASEALKHPWICQR---------STVASMMHRQETVDCLKKFNARRK 291

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+NL++        +K+ DF ++  V  D        GTP Y+          GK   
Sbjct: 129 LKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVD 188
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             + GV  Y+LL G+ PF  E     ++ I     DFP   ++ ++PEAKD I K+L  N
Sbjct: 189 MWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTIN 248
Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR 260
           P +R+TA EALKHPW+  +         S+  S++  Q+    L+K+ ++ +
Sbjct: 249 PAKRITASEALKHPWICQR---------STVASMMHRQETVDCLKKFNARRK 291

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 25/186 (13%)
Query: 91  SVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYV- 148
           +VL    M  +   L+P+NL++        +K+ DF ++  V  D        GTP Y+ 
Sbjct: 115 AVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLS 174
Query: 149 ---------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS 194
                    GK     + GV  Y+LL G+ PF  E   + ++ I     DFP   ++ ++
Sbjct: 175 PEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVT 234
Query: 195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK 254
           PEAK+ I ++L  NP +R+TA EALKHPW+  +         S+  S++  Q+  + L+K
Sbjct: 235 PEAKNLINQMLTINPAKRITAHEALKHPWVCQR---------STVASMMHRQETVECLKK 285
Query: 255 YLSKSR 260
           + ++ +
Sbjct: 286 FNARRK 291

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 19/183 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     +  IK+ DF +S V  +  +++E LGT  Y+                
Sbjct: 162 LKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVW 221
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S+GV  ++LL G+ PFGG+TD E  R + K +  F    ++++S  AKD I ++L  +  
Sbjct: 222 SIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQ 281
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R++A++AL+HPW+  K+    +      PS+    +   N+RK+ +  + A    +  A
Sbjct: 282 RRISAQQALEHPWI--KEMCSKKESGIELPSLANAIE---NMRKFQNSQKLAQAALLYMA 336
Query: 271 SKL 273
           SKL
Sbjct: 337 SKL 339

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     +  IK+ DF +S     G +++E LGT  Y+                
Sbjct: 130 LKPENLLLESKSRDALIKIVDFGLSAHFEVGGKMKERLGTAYYIAPEVLRKKYDEKCDVW 189
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL G+ PFGG+TD E  + + K +  F    +  +S EAK  +  +L   P 
Sbjct: 190 SCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPS 249
Query: 211 ERMTAKEALKHPWLMN-KKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
           +R++A+EAL HPW++    Q  T VG  +    +       N++K+ S  + A    +  
Sbjct: 250 KRISAEEALNHPWIVKFCSQKHTDVGKHALTGAL------GNMKKFQSSQKLAQAAMLFM 303
Query: 270 ASKL 273
            SKL
Sbjct: 304 GSKL 307

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     +  IK+ DF +S     G +++E LGT  Y+                
Sbjct: 147 LKPENLLLESKSRDALIKIVDFGLSAHFEVGGKMKERLGTAYYIAPEVLRKKYDEKCDVW 206
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL G+ PFGG+TD E  + + K +  F    +  +S EAK  +  +L   P 
Sbjct: 207 SCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPS 266
Query: 211 ERMTAKEALKHPWLM 225
           +R++A+EAL HPW++
Sbjct: 267 KRISAEEALNHPWIV 281

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N + + D P+  +K+ DF ++     G  +R  +GTP YV                
Sbjct: 149 LKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEW 208
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  YVLL G+ PF   TD E    I +    FP++ + ++SP+A+  I ++L K+P 
Sbjct: 209 SAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPK 268
Query: 211 ERMTAKEALKHPWL 224
           +R+T+ +AL+H W 
Sbjct: 269 QRITSLQALEHEWF 282

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N + + D P+  +K+ DF ++     G  +R  +GTP YV                
Sbjct: 132 LKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEW 191
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  YVLL G+ PF   TD E    I +    FP++ + ++SP+A+  I ++L K+P 
Sbjct: 192 SAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPK 251
Query: 211 ERMTAKEALKHPWL 224
           +R+T+ +AL+H W 
Sbjct: 252 QRITSLQALEHEWF 265

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 37/184 (20%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE-------LLGTPDYV--- 148
           D +   L+P+NL++        +K+ DF ++      IE++          GTP Y+   
Sbjct: 150 DIVHRDLKPENLLLASKCKGAAVKLADFGLA------IEVQGEQQAWFGFAGTPGYLSPE 203
Query: 149 -------GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE 196
                  GK     + GV  Y+LL G+ PF  E   + ++ I     DFP   ++ ++PE
Sbjct: 204 VLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPE 263
Query: 197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYL 256
           AK+ I ++L  NP +R+TA +ALKHPW+  +         S+  S++  Q+  + LRK+ 
Sbjct: 264 AKNLINQMLTINPAKRITADQALKHPWVCQR---------STVASMMHRQETVECLRKFN 314
Query: 257 SKSR 260
           ++ +
Sbjct: 315 ARRK 318

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL+     P+  +K+ DF +S+++   + ++ + GTP Y                 
Sbjct: 174 LKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDM 233
Query: 151 -SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
            S+G+  Y+LL GF PF  E  D   FR I   +  F    ++++S  AKD + K+++ +
Sbjct: 234 WSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLD 293
Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR-EALFEKV 267
           P +R+T  +AL+HPW+  K             + +     +K L+++ ++ + +A  + V
Sbjct: 294 PKKRLTTFQALQHPWVTGK-----------AANFVHMDTAQKKLQEFNARRKLKAAVKAV 342
Query: 268 ISASKL 273
           +++S+L
Sbjct: 343 VASSRL 348

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSL------------ 152
           L+P+NL++        +K+ DF ++  + D        GTP Y+   +            
Sbjct: 154 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 213
Query: 153 ---GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 214 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 273
Query: 210 MERMTAKEALKHPWLMNKKQIMTRV 234
            +R+TA +ALK PW+ N++++ + +
Sbjct: 274 KKRITADQALKVPWICNRERVASAI 298

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSL------------ 152
           L+P+NL++        +K+ DF ++  + D        GTP Y+   +            
Sbjct: 130 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 189
Query: 153 ---GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 190 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 249
Query: 210 MERMTAKEALKHPWLMNKKQIMTRV 234
            +R+TA +ALK PW+ N++++ + +
Sbjct: 250 KKRITADQALKVPWICNRERVASAI 274

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSL------------ 152
           L+P+NL++        +K+ DF ++  + D        GTP Y+   +            
Sbjct: 131 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 190
Query: 153 ---GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 191 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRV 234
            +R+TA +ALK PW+ N++++ + +
Sbjct: 251 KKRITADQALKVPWICNRERVASAI 275

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 140 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 199
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 200 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 259
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 260 VVDPKARFTTEEALRHPWLQDE 281

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKSL------------ 152
           L+P+NL++        +K+ DF ++  + D        GTP Y+   +            
Sbjct: 131 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 190
Query: 153 ---GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 191 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 250
Query: 210 MERMTAKEALKHPWLMNKK 228
            +R+TA +ALK PW+ N++
Sbjct: 251 KKRITADQALKVPWICNRE 269

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 139 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 198
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 199 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 258
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 259 VVDPKARFTTEEALRHPWLQDE 280

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 140 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 199
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 200 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 259
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 260 VVDPKARFTTEEALRHPWLQDE 281

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 140 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 199
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 200 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 259
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 260 VVDPKARFTTEEALRHPWLQDE 281

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 146 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 205
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 206 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 265
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 266 VVDPKARFTTEEALRHPWLQDE 287

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 279 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 338
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 339 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 398
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 399 VVDPKARFTTEEALRHPWLQDE 420

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+                
Sbjct: 265 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 324
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF       + ++ I+  + +F  E++ ++S +A D + K+L
Sbjct: 325 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 384
Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 385 VVDPKARFTTEEALRHPWLQDE 406

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +CDIK+ DF +S       ++++ +GT  Y+                
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVW 206
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G+ + +  + +   +  F    +  IS +AKD I K+L  +P 
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPS 266
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R+TA + L+HPW+  +K        S  PS+   +    N+R++ ++ + A    +  A
Sbjct: 267 LRITATQCLEHPWI--QKYSSETPTISDLPSL---ESAMTNIRQFQAEKKLAQAALLYMA 321
Query: 271 SKL 273
           SKL
Sbjct: 322 SKL 324

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +CDIK+ DF +S       ++++ +GT  Y+                
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVW 206
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G+ + +  + +   +  F    +  IS +AKD I K+L  +P 
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPS 266
Query: 211 ERMTAKEALKHPWL 224
            R+TA + L+HPW+
Sbjct: 267 LRITATQCLEHPWI 280

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     +CDIK+ DF +S       ++++ +GT  Y+                
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVW 206
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G+ + +  + +   +  F    +  IS +AKD I K+L  +P 
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPS 266
Query: 211 ERMTAKEALKHPWL 224
            R+TA + L+HPW+
Sbjct: 267 LRITATQCLEHPWI 280

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+N+++       +IK+ DF +S       ++R+ LGT  Y+                
Sbjct: 172 IKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVW 231
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL G+ PFGG+ D +  + + K +  F    +++IS EAK+ I  +L  +  
Sbjct: 232 SCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYN 291
Query: 211 ERMTAKEALKHPWL 224
           +R TA+EAL   W+
Sbjct: 292 KRCTAEEALNSRWI 305

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 47/165 (28%)
Query: 105 LQPQNLVMMGDFPN--CDIKVCDFEI-SRVILDG----IEIRELL---GTPDYVGK---- 150
           L+P+N++   + PN    +K+CDF++ S + L+G    I   ELL   G+ +Y+      
Sbjct: 137 LKPENILC--EHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVE 194
Query: 151 ----------------SLGVTAYVLLTGFSPFGGETDSET---------------FRNIS 179
                           SLGV  Y+LL+G+ PF G   S+                F +I 
Sbjct: 195 AFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQ 254
Query: 180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           + + +FPD+ +  IS  AKD I+K+L+++  +R++A + L+HPW+
Sbjct: 255 EGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWV 299

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++     N ++K+ DF  S V         L GT DY+      G+        
Sbjct: 138 IKPENLLLGS---NGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 193
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET+R IS+ +  FPD + E     A+D I+++L  N 
Sbjct: 194 WSLGVLCYEFLVGMPPFEAHTYQETYRRISRVEFTFPDFVTEG----ARDLISRLLKHNA 249
Query: 210 MERMTAKEALKHPWL 224
            +R+T  E L+HPW+
Sbjct: 250 SQRLTLAEVLEHPWI 264

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 47/165 (28%)
Query: 105 LQPQNLVMMGDFPN--CDIKVCDFEI-SRVILDG----IEIRELL---GTPDYVGK---- 150
           L+P+N++   + PN    +K+CDF + S + L+G    I   ELL   G+ +Y+      
Sbjct: 137 LKPENILC--EHPNQVSPVKICDFGLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVE 194
Query: 151 ----------------SLGVTAYVLLTGFSPFGGETDSET---------------FRNIS 179
                           SLGV  Y+LL+G+ PF G   S+                F +I 
Sbjct: 195 AFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQ 254
Query: 180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           + + +FPD+ +  IS  AKD I+K+L+++  +R++A + L+HPW+
Sbjct: 255 EGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWV 299

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++     N ++K+ DF  S V         L GT DY+      G+        
Sbjct: 138 IKPENLLLGS---NGELKIADFGWS-VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDL 193
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET+R IS+ +  FPD + E     A+D I+++L  N 
Sbjct: 194 WSLGVLCYEFLVGMPPFEAHTYQETYRRISRVEFTFPDFVTEG----ARDLISRLLKHNA 249
Query: 210 MERMTAKEALKHPWL 224
            +R+T  E L+HPW+
Sbjct: 250 SQRLTLAEVLEHPWI 264

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     + +I++ DF +S       ++++ +GT  Y+                
Sbjct: 175 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVW 234
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K+L   P 
Sbjct: 235 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPS 294
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R++A++AL H W+    +    V   S  + I       N+R++    + A    +   
Sbjct: 295 MRISARDALDHEWIQTYTKEQISVDVPSLDNAIL------NIRQFQGTQKLAQAALLYMG 348
Query: 271 SKLQQENLRKSALLKYNKTRRLCESQM 297
           SKL  ++  K     ++K  +  + Q+
Sbjct: 349 SKLTSQDETKELTAIFHKMDKNGDGQL 375

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     + +I++ DF +S       ++++ +GT  Y+                
Sbjct: 176 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVW 235
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K+L   P 
Sbjct: 236 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPS 295
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R++A++AL H W+    +    V   S  + I       N+R++    + A    +   
Sbjct: 296 MRISARDALDHEWIQTYTKEQISVDVPSLDNAIL------NIRQFQGTQKLAQAALLYMG 349
Query: 271 SKLQQENLRKSALLKYNKTRRLCESQM 297
           SKL  ++  K     ++K  +  + Q+
Sbjct: 350 SKLTSQDETKELTAIFHKMDKNGDGQL 376

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     + +I++ DF +S       ++++ +GT  Y+                
Sbjct: 152 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVW 211
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K+L   P 
Sbjct: 212 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPS 271
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R++A++AL H W+    +    V   S  + I       N+R++    + A    +   
Sbjct: 272 MRISARDALDHEWIQTYTKEQISVDVPSLDNAIL------NIRQFQGTQKLAQAALLYMG 325
Query: 271 SKLQQENLRKSALLKYNKTRRLCESQM 297
           SKL  ++  K     ++K  +  + Q+
Sbjct: 326 SKLTSQDETKELTAIFHKMDKNGDGQL 352

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     + +I++ DF +S       + ++ +GT  Y+                
Sbjct: 152 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKIGTAYYIAPEVLHGTYDEKCDVW 211
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K L   P 
Sbjct: 212 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKXLTYVPS 271
Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISA 270
            R++A++AL H W+    +    V   S  + I       N+R++    + A    +   
Sbjct: 272 XRISARDALDHEWIQTYTKEQISVDVPSLDNAIL------NIRQFQGTQKLAQAALLYXG 325
Query: 271 SKLQQENLRKSALLKYNKTRRLCESQM 297
           SKL  ++  K     ++K  +  + Q+
Sbjct: 326 SKLTSQDETKELTAIFHKXDKNGDGQL 352

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        EL GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 246 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 275

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+NL++     + +I++ DF +S       ++++ +GT  Y+                
Sbjct: 158 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVW 217
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K+L   P 
Sbjct: 218 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPS 277
Query: 211 ERMTAKEALKHPWL 224
            R++A++AL H W+
Sbjct: 278 MRISARDALDHEWI 291

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 15/92 (16%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSET---------------FRNISKAQLDFPDELFEDISP 195
           SLGV  Y++L+G+ PF G   ++                F +I + + +FPD+ +  IS 
Sbjct: 211 SLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISS 270
Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNK 227
           EAKD I+K+L+++  +R++A + L+HPW+  +
Sbjct: 271 EAKDLISKLLVRDAKQRLSAAQVLQHPWVQGQ 302

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       + E   TP YV                
Sbjct: 141 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTEPCYTPYYVAPEVLGPEKYDKSCDM 200
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 201 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 260
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 261 KTEPTQRMTITEFMNHPWIMQSTKV 285

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 139 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 194
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 195 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 251 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 280

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 160 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDL 215
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 216 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 271
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 272 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 301

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 135 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 190
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 191 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 246
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 247 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 276

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 139 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDL 194
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 195 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 251 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 280

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 246 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 275

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 246 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 275

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 160 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 215
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 216 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 271
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 272 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 301

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 136 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 191
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 192 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 247
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 248 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 277

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 151 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 206
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 207 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 262
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 263 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 292

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 249 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 278

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 49/210 (23%)
Query: 105 LQPQNLVMMGDFPNCD-IKVCDFEISRVILDGIEIRE---LLGTPDYVGK---------- 150
           L+P N++ + +  N + I++CDF  ++      ++R    LL TP Y             
Sbjct: 142 LKPSNILYVDESGNPESIRICDFGFAK------QLRAENGLLMTPCYTANFVAPEVLERQ 195
Query: 151 ---------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPEAK 198
                    SLGV  Y +LTG++PF     +T  E    I   +       +  +S  AK
Sbjct: 196 GYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAK 255
Query: 199 DFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK---- 254
           D ++K+L  +P +R+TA   L+HPW+++  Q+         P    N+Q+  +L K    
Sbjct: 256 DLVSKMLHVDPHQRLTAALVLRHPWIVHWDQL---------PQYQLNRQDAPHLVKGAMA 306
Query: 255 ----YLSKSREALFEKVISASKLQQENLRK 280
                L++++  + E V  ++  Q+  ++K
Sbjct: 307 ATYSALNRNQSPVLEPVGRSTLAQRRGIKK 336

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 139 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDL 194
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 195 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 251 SQRPXLREVLEHPWI---------TANSSKPSNCQNKES 280

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 139 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 194
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 195 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 251 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 280

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 139 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 194
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 195 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 250
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 251 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 280

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 249 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 278

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 246 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 275

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 135 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDL 190
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 191 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 246
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 247 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 276

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     N ++K+ DF +S ++ DG  ++   G+P+Y       GK        
Sbjct: 134 LKPENLLLDD---NLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVD 190
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S G+  YV+L G  PF  E     F+ ++      PD L    SP A+  I ++++ +
Sbjct: 191 VWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFL----SPGAQSLIRRMIVAD 246
Query: 209 PMERMTAKEALKHPWL 224
           PM+R+T +E  + PW 
Sbjct: 247 PMQRITIQEIRRDPWF 262

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 149 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 208
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 209 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 268
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 269 KTEPTQRMTITEFMNHPWIMQSTKV 293

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 148 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 207
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 208 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 267
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 268 KTEPTQRMTITEFMNHPWIMQSTKV 292

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 193 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 252
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 253 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 312
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 313 KTEPTQRMTITEFMNHPWIMQSTKV 337

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 147 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 206
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 207 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 266
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 267 KTEPTQRMTITEFMNHPWIMQSTKV 291

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 141 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 200
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 201 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 260
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 261 KTEPTQRMTITEFMNHPWIMQSTKV 285

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 143 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 202
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 203 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 262
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 263 KTEPTQRMTITEFMNHPWIMQSTKV 287

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 187 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 246
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 247 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 306
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 307 KTEPTQRMTITEFMNHPWIMQSTKV 331

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 142 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 201
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 202 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 261
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 262 KTEPTQRMTITEFMNHPWIMQSTKV 286

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 157 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 216
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 217 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 276
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 277 KTEPTQRMTITEFMNHPWIMQSTKV 301

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 143 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 202
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 203 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 262
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +RMT  E + HPW+M   ++
Sbjct: 263 KTEPTQRMTITEFMNHPWIMQSTKV 287

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 49/210 (23%)
Query: 105 LQPQNLVMMGDFPNCD-IKVCDFEISRVILDGIEIRE---LLGTPDYVGK---------- 150
           L+P N++ + +  N + I++CDF  ++      ++R    LL TP Y             
Sbjct: 142 LKPSNILYVDESGNPESIRICDFGFAK------QLRAENGLLXTPCYTANFVAPEVLERQ 195
Query: 151 ---------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPEAK 198
                    SLGV  Y  LTG++PF     +T  E    I   +       +  +S  AK
Sbjct: 196 GYDAACDIWSLGVLLYTXLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAK 255
Query: 199 DFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK---- 254
           D ++K L  +P +R+TA   L+HPW+++  Q+         P    N+Q+  +L K    
Sbjct: 256 DLVSKXLHVDPHQRLTAALVLRHPWIVHWDQL---------PQYQLNRQDAPHLVKGAXA 306
Query: 255 ----YLSKSREALFEKVISASKLQQENLRK 280
                L++++  + E V  ++  Q+  ++K
Sbjct: 307 ATYSALNRNQSPVLEPVGRSTLAQRRGIKK 336

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ +F  S V         L GT DY+      G+        
Sbjct: 136 IKPENLLLGS---AGELKIANFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 191
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 192 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 247
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQN 248
            +R   +E L+HPW+            SS PS  QN+++
Sbjct: 248 SQRPMLREVLEHPWI---------TANSSKPSNCQNKES 277

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 249 SQRPMLREVLEHPWI 263

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 34/153 (22%)
Query: 105 LQPQNLVMMGDF--PNCDIKVCDFEISRVILDGIEIRE---LLGTPDYVGK--------- 150
           L+P N++ + +   P C +++CDF  ++      ++R    LL TP Y            
Sbjct: 147 LKPSNILYVDESGNPEC-LRICDFGFAK------QLRAENGLLMTPCYTANFVAPEVLKR 199
Query: 151 ----------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPEA 197
                     SLG+  Y +L G++PF     +T  E    I   +       +  +S  A
Sbjct: 200 QGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETA 259
Query: 198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQI 230
           KD ++K+L  +P +R+TAK+ L+HPW+  K ++
Sbjct: 260 KDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKL 292

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 246 SQRPMLREVLEHPWI 260

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 35/165 (21%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S           L GT DY+      G+        
Sbjct: 135 IKPENLLLGS---AGELKIADFGWS-CHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDL 190
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 191 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 246
Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK 254
            +R   +E L+HPW+            SS PS   N QNK++  K
Sbjct: 247 SQRPMLREVLEHPWI---------TANSSKPS---NSQNKESASK 279

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 246 SQRPMLREVLEHPWI 260

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N+++  D    +IK+ DF  S  +  G ++RE+ GTP Y+                
Sbjct: 150 LKPENILLDDDM---NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGY 206
Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     S GV  Y LL G  PF         R I      F    ++D S   KD +++
Sbjct: 207 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSR 266
Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L+  P +R TA+EAL HP+ 
Sbjct: 267 FLVVQPQKRYTAEEALAHPFF 287

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 249 SQRPMLREVLEHPWI 263

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 249 SQRPMLREVLEHPWI 263

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 133 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 188
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 189 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 244
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 245 SQRPMLREVLEHPWI 259

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 246 SQRPMLREVLEHPWI 260

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 34/153 (22%)
Query: 105 LQPQNLVMMGDF--PNCDIKVCDFEISRVILDGIEIRE---LLGTPDYVGK--------- 150
           L+P N++ + +   P C +++CDF  ++      ++R    LL TP Y            
Sbjct: 147 LKPSNILYVDESGNPEC-LRICDFGFAK------QLRAENGLLMTPCYTANFVAPEVLKR 199
Query: 151 ----------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPEA 197
                     SLG+  Y +L G++PF     +T  E    I   +       +  +S  A
Sbjct: 200 QGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETA 259
Query: 198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQI 230
           KD ++K+L  +P +R+TAK+ L+HPW+  K ++
Sbjct: 260 KDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKL 292

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N+++  D    +IK+ DF  S  +  G ++RE+ GTP Y+                
Sbjct: 137 LKPENILLDDDM---NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGY 193
Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     S GV  Y LL G  PF         R I      F    ++D S   KD +++
Sbjct: 194 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSR 253
Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L+  P +R TA+EAL HP+ 
Sbjct: 254 FLVVQPQKRYTAEEALAHPFF 274

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 138 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 193
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 194 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 249
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 250 SQRPMLREVLEHPWI 264

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 131 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 186
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 187 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 242
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 243 SQRPMLREVLEHPWI 257

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+CDF  S+  +   + +  +GTP Y+           GK   
Sbjct: 140 LKLENTLLDGS-PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVAD 198
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFR----NISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    + + FR     I   Q   PD  +  ISPE +  I++I
Sbjct: 199 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPD--YVHISPECRHLISRI 256
Query: 205 LIKNPMERMTAKEALKHPW--------LMNKKQIMTRVGCSSCP--SIIQNQQ------- 247
            + +P +R++  E   H W        LMN   + T+   S  P  SI +  Q       
Sbjct: 257 FVADPAKRISIPEIRNHEWFLKNLPADLMNDNTMTTQFAASDQPGQSIEEIMQIIAEATV 316
Query: 248 ---NKKNLRKYLSKS 259
                +NL  YL+ S
Sbjct: 317 PPAGTQNLNHYLTGS 331

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 24/141 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N +++ D  N  I++ DF  S  +  G ++REL GTP Y+                
Sbjct: 226 LKPEN-ILLDD--NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGY 282
Query: 149 GKSL-----GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK +     GV  + LL G  PF         R I + Q  F    ++D S   KD I++
Sbjct: 283 GKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISR 342
Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L  +P  R+TA++AL+HP+ 
Sbjct: 343 LLQVDPEARLTAEQALQHPFF 363

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S V         L GT DY+      G+        
Sbjct: 134 IKPENLLLGS---AGELKIADFGWS-VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  +T++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 190 WSLGVLCYEFLVGKPPFEANTYQDTYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 245
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 246 SQRPMLREVLEHPWI 260

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ +F  S V         L GT DY+      G+        
Sbjct: 137 IKPENLLLGS---AGELKIANFGWS-VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD + E     A+D I+++L  NP
Sbjct: 193 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG----ARDLISRLLKHNP 248
Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 249 SQRPMLREVLEHPWI 263

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N+++  D    +IK+ DF  S  +  G ++R + GTP Y+                
Sbjct: 150 LKPENILLDDDM---NIKLTDFGFSCQLDPGEKLRSVCGTPSYLAPEIIECSMNDNHPGY 206
Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     S GV  Y LL G  PF         R I      F    ++D S   KD +++
Sbjct: 207 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSR 266
Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L+  P +R TA+EAL HP+ 
Sbjct: 267 FLVVQPQKRYTAEEALAHPFF 287

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 187 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDX 246
Query: 151 -SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF    G          I   Q +FP+  + ++S E K  I  +L
Sbjct: 247 WSLGVIXYILLCGYPPFYSNHGLAISPGXKTRIRXGQYEFPNPEWSEVSEEVKXLIRNLL 306
Query: 206 IKNPMERMTAKEALKHPWLMNKKQI 230
              P +R T  E   HPW+    ++
Sbjct: 307 KTEPTQRXTITEFXNHPWIXQSTKV 331

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYVGKSL----------- 152
           ++P+N+++     +  +K+ DF ++ ++   G+     +GTP ++   +           
Sbjct: 156 VKPENVLLASKENSAPVKLGDFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVD 215
Query: 153 ----GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
               GV  ++LL+G  PF G T    F  I K +       +  IS  AKD + ++L+ +
Sbjct: 216 VWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLD 274
Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYL 256
           P ER+T  EAL HPWL  + +   ++     P  ++ Q  K N R+ L
Sbjct: 275 PAERITVYEALNHPWLKERDRYAYKI---HLPETVE-QLRKFNARRKL 318

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+CDF  S+  +   + +  +GTP Y+           GK   
Sbjct: 141 LKLENTLLDGS-PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVAD 199
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRN----ISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    + + FR     I   Q   PD  +  ISPE +  I++I
Sbjct: 200 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPD--YVHISPECRHLISRI 257
Query: 205 LIKNPMERMTAKEALKHPW--------LMNKKQIMTRVGCSSCP--SIIQNQQ------- 247
            + +P +R++  E   H W        LMN   + T+   S  P  SI +  Q       
Sbjct: 258 FVADPAKRISIPEIRNHEWFLKNLPADLMNDNTMTTQFDESDQPGQSIEEIMQIIAEATV 317
Query: 248 ---NKKNLRKYLSKS 259
                +NL  YL+ S
Sbjct: 318 PPAGTQNLNHYLTGS 332

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 32/161 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GKS------- 151
           ++P+NL+M       ++K+ DF  S V    +  R + GT DY+      GK+       
Sbjct: 140 IKPENLLMGY---KGELKIADFGWS-VHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDL 195
Query: 152 --LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y  L G  PF   + +ET R I    L FP  L    S  +KD I+K+L  +P
Sbjct: 196 WCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFL----SDGSKDLISKLLRYHP 251
Query: 210 MERMTAKEALKHPWL-MNKKQIMTRVGCSSCPSIIQNQQNK 249
            +R+  K  ++HPW+  N ++++        P + Q+ Q+K
Sbjct: 252 PQRLPLKGVMEHPWVKANSRRVL--------PPVYQSTQSK 284

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 32/161 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GKS------- 151
           ++P+NL+M       ++K+ DF  S V    +  R + GT DY+      GK+       
Sbjct: 141 IKPENLLMGY---KGELKIADFGWS-VHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDL 196
Query: 152 --LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y  L G  PF   + +ET R I    L FP  L    S  +KD I+K+L  +P
Sbjct: 197 WCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFL----SDGSKDLISKLLRYHP 252
Query: 210 MERMTAKEALKHPWL-MNKKQIMTRVGCSSCPSIIQNQQNK 249
            +R+  K  ++HPW+  N ++++        P + Q+ Q+K
Sbjct: 253 PQRLPLKGVMEHPWVKANSRRVL--------PPVYQSTQSK 285

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGKS-----LGVTAYVL 159
           ++P+NL+     PN  +K+ DF  ++             T +   KS     LGV  Y+L
Sbjct: 143 VKPENLLYTSKRPNAILKLTDFGFAKET-----------TGEKYDKSCDMWSLGVIMYIL 191
Query: 160 LTGFSPF----GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA 215
           L G+ PF    G          I   Q +FP+  + ++S E K  I  +L   P +RMT 
Sbjct: 192 LCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI 251
Query: 216 KEALKHPWLMNKKQI 230
            E + HPW+M   ++
Sbjct: 252 TEFMNHPWIMQSTKV 266

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     + ++K+ DF +S ++ DG  ++   G+P+Y       GK        
Sbjct: 139 LKPENLLLD---EHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  YV+L    PF  E+    F+NIS      P  L    SP A   I ++LI N
Sbjct: 196 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFL----SPGAAGLIKRMLIVN 251
Query: 209 PMERMTAKEALKHPWL 224
           P+ R++  E ++  W 
Sbjct: 252 PLNRISIHEIMQDDWF 267

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     + ++K+ DF +S ++ DG  ++   G+P+Y       GK        
Sbjct: 138 LKPENLLLD---EHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVD 194
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  YV+L    PF  E+    F+NIS      P  L    SP A   I ++LI N
Sbjct: 195 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFL----SPGAAGLIKRMLIVN 250
Query: 209 PMERMTAKEALKHPWL 224
           P+ R++  E ++  W 
Sbjct: 251 PLNRISIHEIMQDDWF 266

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     + ++K+ DF +S ++ DG  ++   G+P+Y       GK        
Sbjct: 129 LKPENLLLD---EHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVD 185
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  YV+L    PF  E+    F+NIS      P  L    SP A   I ++LI N
Sbjct: 186 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFL----SPGAAGLIKRMLIVN 241
Query: 209 PMERMTAKEALKHPWL 224
           P+ R++  E ++  W 
Sbjct: 242 PLNRISIHEIMQDDWF 257

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+NL++     + ++K+ DF +S ++ DG  ++   G+P+Y       GK        
Sbjct: 133 LKPENLLLD---EHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVD 189
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  YV+L    PF  E+    F+NIS      P  L    SP A   I ++LI N
Sbjct: 190 VWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFL----SPGAAGLIKRMLIVN 245
Query: 209 PMERMTAKEALKHPWL 224
           P+ R++  E ++  W 
Sbjct: 246 PLNRISIHEIMQDDWF 261

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------- 150
           D I+  L+P+N+++     N  IK+ DF  ++ + D      L GTPDY+          
Sbjct: 126 DIIYRDLKPENILLDK---NGHIKITDFGFAKYVPD--VTYXLCGTPDYIAPEVVSTKPY 180
Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S G+  Y +L G++PF      +T+  I  A+L FP    ED+    KD +++
Sbjct: 181 NKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDV----KDLLSR 236
Query: 204 ILIKNPMERM-----TAKEALKHPW---LMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKY 255
           ++ ++  +R+       ++   HPW   ++ +K +   +     P I Q Q +     KY
Sbjct: 237 LITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKY 296

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+ DF  S+  +   + +  +GTP Y+           GK   
Sbjct: 141 LKLENTLLDGS-PAPRLKIADFGYSKASVLHSQPKSAVGTPAYIAPEVLLKKEYDGKVAD 199
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFR----NISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    + + FR     I   Q   PD  +  ISPE +  I++I
Sbjct: 200 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPD--YVHISPECRHLISRI 257
Query: 205 LIKNPMERMTAKEALKHPW--------LMNKKQIMTRVGCSSCPS 241
            + +P +R++  E   H W        LMN   + T+   S  P 
Sbjct: 258 FVADPAKRISIPEIRNHEWFLKNLPADLMNDNTMTTQFDESDQPG 302

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 139 RELLGTP-DYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA 197
           RE  G P D  G   GV  ++LL+G  PF G T    F  I K +       +  IS  A
Sbjct: 209 REPYGKPVDVWG--CGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHISESA 265
Query: 198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYL 256
           KD + ++L+ +P ER+T  EAL HPWL  + +   ++     P  ++ Q  K N R+ L
Sbjct: 266 KDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKI---HLPETVE-QLRKFNARRKL 320

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+C F  S+  +   + ++ +GTP Y+           GK   
Sbjct: 141 LKLENTLLDGS-PAPRLKICAFGYSKSSVLHSQPKDTVGTPAYIAPEVLLKKEYDGKVAD 199
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRN----ISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    + + FR     I   Q   PD  +  ISPE +  I++I
Sbjct: 200 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPD--YVHISPECRHLISRI 257
Query: 205 LIKNPMERMTAKEALKHPW--------LMNKKQIMTRVGCSSCP--SIIQNQQ------- 247
            + +P +R++  E   H W        LMN   + T+   S  P  SI +  Q       
Sbjct: 258 FVADPAKRISIPEIRNHEWFLKNLPADLMNDNTMTTQFDESDQPGQSIEEIMQIIAEATV 317
Query: 248 ---NKKNLRKYLSKS 259
                +NL  YL+ S
Sbjct: 318 PPAGTQNLNHYLTGS 332

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 139 RELLGTP-DYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA 197
           RE  G P D  G   GV  ++LL+G  PF G T    F  I K +       +  IS  A
Sbjct: 207 REPYGKPVDVWG--CGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHISESA 263
Query: 198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYL 256
           KD + ++L+ +P ER+T  EAL HPWL  + +   ++     P  ++ Q  K N R+ L
Sbjct: 264 KDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKI---HLPETVE-QLRKFNARRKL 318

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 43/195 (22%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+C F  S+  +   + +  +GTP Y+           GK   
Sbjct: 141 LKLENTLLDGS-PAPRLKICAFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVAD 199
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRN----ISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    + + FR     I   Q   PD  +  ISPE +  I++I
Sbjct: 200 VWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPD--YVHISPECRHLISRI 257
Query: 205 LIKNPMERMTAKEALKHPW--------LMNKKQIMTRVGCSSCP--SIIQNQQ------- 247
            + +P +R++  E   H W        LMN   + T+   S  P  SI +  Q       
Sbjct: 258 FVADPAKRISIPEIRNHEWFLKNLPADLMNDNTMTTQFDESDQPGQSIEEIMQIIAEATV 317
Query: 248 ---NKKNLRKYLSKS 259
                +NL  YL+ S
Sbjct: 318 PPAGTQNLNHYLTGS 332

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+      +  +K+ DF  ++       ++    TP YV                
Sbjct: 135 VKPENLLYTSKEKDAVLKLTDFGFAKETTQNA-LQTPCYTPYYVAPEVLGPEKYDKSCDM 193
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETF----RNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL GF PF   T         R I   Q  FP+  + ++S +AK  I  +L
Sbjct: 194 WSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 253
Query: 206 IKNPMERMTAKEALKHPWL 224
             +P ER+T  + + HPW+
Sbjct: 254 KTDPTERLTITQFMNHPWI 272

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+      +  +K+ DF  ++       ++    TP YV                
Sbjct: 154 VKPENLLYTSKEKDAVLKLTDFGFAKETTQNA-LQTPCYTPYYVAPEVLGPEKYDKSCDM 212
Query: 151 -SLGVTAYVLLTGFSPFGGETDSETF----RNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL GF PF   T         R I   Q  FP+  + ++S +AK  I  +L
Sbjct: 213 WSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 272
Query: 206 IKNPMERMTAKEALKHPWL 224
             +P ER+T  + + HPW+
Sbjct: 273 KTDPTERLTITQFMNHPWI 291

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  ++LL G  PF G  D++T   +   +L F +  +  +SP A+D ++ +L +N  
Sbjct: 261 SAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVD 320
Query: 211 ERMTAKEALKHPWL 224
           ER  A  AL+HPW+
Sbjct: 321 ERFDAMRALQHPWI 334

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 152 LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPME 211
           +GV  Y LL G  PF   + +ET+R I K  L FP      +   A+D I+K+L  NP E
Sbjct: 207 IGVLCYELLVGNPPFESASHNETYRRIVKVDLKFP----ASVPTGAQDLISKLLRHNPSE 262
Query: 212 RMTAKEALKHPWL-MNKKQIM 231
           R+   +   HPW+  N ++++
Sbjct: 263 RLPLAQVSAHPWVRANSRRVL 283

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 20/109 (18%)
Query: 121 IKVCDFEISR-VILDGIEIRELLGTPDYV----------GKSL-----GVTAYVLLTGFS 164
           IK+ DF + +  ++DG+  RE  GTPDY+          GKS+     GV  Y +L G  
Sbjct: 159 IKIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQP 218
Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           PF GE + E F++I +  + +P  L    S EA      ++ K+P +R+
Sbjct: 219 PFDGEDEDELFQSIMEHNVSYPKSL----SKEAVSICKGLMTKHPAKRL 263

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           N +IK+ DF + +++ +   +   L GTP+Y+                 SLG   Y LL 
Sbjct: 148 NMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLI 207
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH 221
           G  PF  +T   T   +  A  + P  L    S EAKD I ++L +NP +R++    L H
Sbjct: 208 GRPPFDTDTVKNTLNKVVLADYEMPSFL----SIEAKDLIHQLLRRNPADRLSLSSVLDH 263
Query: 222 PWL 224
           P++
Sbjct: 264 PFM 266

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GK--- 150
           L+ +N ++ G  P   +K+CDF  S+  +   + +  +GTP Y+           GK   
Sbjct: 142 LKLENTLLDGS-PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIAD 200
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFR----NISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    +   +R     I   +   PD++   ISPE    I++I
Sbjct: 201 VWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDI--RISPECCHLISRI 258
Query: 205 LIKNPMERMTAKEALKHPWLM 225
            + +P  R++  E   H W +
Sbjct: 259 FVADPATRISIPEIKTHSWFL 279

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N++     P+  IK+ DF ++ +           GT  Y+                
Sbjct: 150 LKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIW 209
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y LLTG  PF G +  E  +  +  + ++  E    ++P+A D + ++L K+P 
Sbjct: 210 SAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVEC-RPLTPQAVDLLKQMLTKDPE 268
Query: 211 ERMTAKEALKHPWL 224
            R +A + L H W 
Sbjct: 269 RRPSAAQVLHHEWF 282

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV------------ILDGIEIRELLGTPDYVGK-- 150
           L+P+NL+   +  N +IK+ DF  +R+                    ELL    Y     
Sbjct: 132 LKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCD 191
Query: 151 --SLGVTAYVLLTGFSPFGGETDS-------ETFRNISKAQLDFPDELFEDISPEAKDFI 201
             SLGV  Y +L+G  PF     S       E  + I K    F  E ++++S EAKD I
Sbjct: 192 LWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLI 251
Query: 202 AKILIKNPMERMTAKEALKHPWLMNKKQI 230
             +L  +P +R+       + WL +  Q+
Sbjct: 252 QGLLTVDPNKRLKMSGLRYNEWLQDGSQL 280

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 80  VYQASATTKAGSVLFPPLMDFIFFFLQPQNLV--------MMGDFPNCDIKVCDFEISRV 131
           + Q     +  +V +   +    FFLQ + ++        +M D     IK+ DF + + 
Sbjct: 433 IQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKE 491
Query: 132 -ILDGIEIRELLGTPDYV----------GKSL-----GVTAYVLLTGFSPFGGETDSETF 175
            I DG+  +   GTPDY+          GKS+     GV  Y +L G +PF GE + E F
Sbjct: 492 NIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELF 551
Query: 176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           ++I +  + +P    + +S EA      ++ K+P +R+
Sbjct: 552 QSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRL 585

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 128 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND 184
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 185 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 240
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 241 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 269

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVI--LDGIEIRELLGTPDYV-------------G 149
           ++P NL++  D     IK+ DF +S      D + +   +GTP ++             G
Sbjct: 163 IKPSNLLVGED---GHIKIADFGVSNEFKGSDAL-LSNTVGTPAFMAPESLSETRKIFSG 218
Query: 150 KSL-----GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
           K+L     GVT Y  + G  PF  E        I    L+FPD+   DI+ + KD I ++
Sbjct: 219 KALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQ--PDIAEDLKDLITRM 276
Query: 205 LIKNPMERMTAKEALKHPWL 224
           L KNP  R+   E   HPW+
Sbjct: 277 LDKNPESRIVVPEIKLHPWV 296

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 125 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND 181
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 237
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 238 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 125 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDND 181
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 237
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 238 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 125 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDND 181
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 237
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 238 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 125 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND 181
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 237
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 238 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 125 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDND 181
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 237
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 238 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 266

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 99  DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV--------- 148
           D ++  ++ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+         
Sbjct: 130 DVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDND 186
Query: 149 -GKS-----LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G++     LGV  Y ++ G  PF  +     F  I   ++ FP  L    SPEAK  +A
Sbjct: 187 YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLA 242
Query: 203 KILIKNPMERM-----TAKEALKHPWLMN 226
            +L K+P +R+      AKE ++H + ++
Sbjct: 243 GLLKKDPKQRLGGGPSDAKEVMEHRFFLS 271

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           IK+ DF + +  +L   +  E  GTPDY+                 S GV  Y +L G S
Sbjct: 158 IKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQS 217
Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK-HP 222
           PF G+ + E F +I      +P  L      EAKD + K+ ++ P +R+  +  ++ HP
Sbjct: 218 PFHGQDEEELFHSIRMDNPFYPRWL----EKEAKDLLVKLFVREPEKRLGVRGDIRQHP 272

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 80  VYQASATTKAGSVLFPPLMDFIFFFLQPQNLV--------MMGDFPNCDIKVCDFEISRV 131
           + Q     +  +V +   +    FFLQ + ++        +M D     IK+ DF + + 
Sbjct: 112 IQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKE 170
Query: 132 -ILDGIEIRELLGTPDYV----------GKSL-----GVTAYVLLTGFSPFGGETDSETF 175
            I DG+  +   GTPDY+          GKS+     GV  Y +L G +PF GE + E F
Sbjct: 171 NIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELF 230
Query: 176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
           ++I +  + +P    + +S EA      ++ K+P +R+
Sbjct: 231 QSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRL 264

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 30/156 (19%)
Query: 101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISR-VILDGIEIRELLGTPDYVGK--------- 150
           I+  L+P+N+++        +K+ DF + +  I DG       GT +Y+           
Sbjct: 143 IYRDLKPENIMLN---HQGHVKLTDFGLCKESIHDGTVTHXFCGTIEYMAPEILMRSGHN 199
Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 SLG   Y +LTG  PF GE   +T   I K +L+ P  L    + EA+D + K+
Sbjct: 200 RAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYL----TQEARDLLKKL 255
Query: 205 LIKNPMERMT-----AKEALKHPWL--MNKKQIMTR 233
           L +N   R+      A E   HP+   +N ++++ R
Sbjct: 256 LKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLAR 291

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 30/156 (19%)
Query: 101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISR-VILDGIEIRELLGTPDYVGK--------- 150
           I+  L+P+N+++        +K+ DF + +  I DG       GT +Y+           
Sbjct: 143 IYRDLKPENIMLN---HQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHN 199
Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 SLG   Y +LTG  PF GE   +T   I K +L+ P  L    + EA+D + K+
Sbjct: 200 RAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYL----TQEARDLLKKL 255
Query: 205 LIKNPMERM-----TAKEALKHPWL--MNKKQIMTR 233
           L +N   R+      A E   HP+   +N ++++ R
Sbjct: 256 LKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLAR 291

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++ E  G+P Y       GK        
Sbjct: 139 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 252 PSKRGTLEQIMKDRWM 267

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-- 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+          G++  
Sbjct: 275 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVD 331
Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+
Sbjct: 332 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKD 387
Query: 209 PMERM-----TAKEALKH 221
           P +R+      AKE ++H
Sbjct: 388 PKQRLGGGSEDAKEIMQH 405

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-- 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+          G++  
Sbjct: 278 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVD 334
Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+
Sbjct: 335 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKD 390
Query: 209 PMERM-----TAKEALKH 221
           P +R+      AKE ++H
Sbjct: 391 PKQRLGGGSEDAKEIMQH 408

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     + + K+ DF +S ++ DG  +R   G+P+Y                 
Sbjct: 142 LKPENVLLDA---HMNAKIADFGLSNMMSDGEFLRXSCGSPNYAAPEVISGRLYAGPEVD 198
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  Y LL G  PF  +     F+ I       P  L    +P     +  +L  +
Sbjct: 199 IWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYL----NPSVISLLKHMLQVD 254
Query: 209 PMERMTAKEALKHPWL 224
           PM+R T K+  +H W 
Sbjct: 255 PMKRATIKDIREHEWF 270

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     + + K+ DF +S ++ DG  +R+  G+P+Y                 
Sbjct: 137 LKPENVLLDA---HMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYAGPEVD 193
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  Y LL G  PF  E     F+ I       P+ L   ++      +  +L  +
Sbjct: 194 IWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVAT----LLMHMLQVD 249
Query: 209 PMERMTAKEALKHPWL 224
           P++R T K+  +H W 
Sbjct: 250 PLKRATIKDIREHEWF 265

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G+P Y       GK        
Sbjct: 139 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 252 PSKRGTLEQIMKDRWM 267

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-- 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+          G++  
Sbjct: 135 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVD 191
Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+
Sbjct: 192 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKD 247
Query: 209 PMERM-----TAKEALKHPWL 224
           P +R+      AKE ++H + 
Sbjct: 248 PKQRLGGGSEDAKEIMQHRFF 268

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G+P Y       GK        
Sbjct: 139 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 252 PSKRGTLEQIMKDRWM 267

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G+P Y       GK        
Sbjct: 139 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 252 PSKRGTLEQIMKDRWM 267

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-- 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+          G++  
Sbjct: 136 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVD 192
Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+
Sbjct: 193 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKD 248
Query: 209 PMERM-----TAKEALKHPWL 224
           P +R+      AKE ++H + 
Sbjct: 249 PKQRLGGGSEDAKEIMQHRFF 269

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G+P Y       GK        
Sbjct: 132 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVD 188
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 189 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 244
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 245 PSKRGTLEQIMKDRWM 260

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRV-ILDGIEIRELLGTPDYV----------GKS-- 151
           L+ +NL++  D     IK+ DF + +  I DG  ++   GTP+Y+          G++  
Sbjct: 137 LKLENLMLDKD---GHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVD 193
Query: 152 ---LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+
Sbjct: 194 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKD 249
Query: 209 PMERM-----TAKEALKHPWL 224
           P +R+      AKE ++H + 
Sbjct: 250 PKQRLGGGSEDAKEIMQHRFF 270

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G P Y       GK        
Sbjct: 139 LKAENLLLDADM---NIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPWL 224
           P +R T ++ +K  W+
Sbjct: 252 PSKRGTLEQIMKDRWM 267

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 135 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 191
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 192 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 247
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 248 LDATKRLGCEE 258

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 134 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 190
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 191 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 246
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 247 LDATKRLGCEE 257

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 133 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 189
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 190 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 245
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 246 LDATKRLGCEE 256

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G+P Y       GK        
Sbjct: 137 LKAENLLLDADM---NIKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVD 193
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + + L+ N
Sbjct: 194 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKRFLVLN 249
Query: 209 PMERMTAKEALKHPWL 224
           P++R T ++ +K  W+
Sbjct: 250 PIKRGTLEQIMKDRWI 265

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 136 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 192
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 193 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 248
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 249 LDATKRLGCEE 259

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 155 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 211
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 267
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 268 LDATKRLGCEE 278

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G P Y       GK        
Sbjct: 140 LKAENLLLDADM---NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVD 196
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + + L+ N
Sbjct: 197 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKRFLVLN 252
Query: 209 PMERMTAKEALKHPWL 224
           P++R T ++ +K  W+
Sbjct: 253 PIKRGTLEQIMKDRWI 268

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 140 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 196
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 197 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 252
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 253 LDATKRLGCEE 263

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 155 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 211
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 267
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 268 LDATKRLGCEE 278

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 159 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 215
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 271
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 272 LDATKRLGCEE 282

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++     + + K+ DF +S ++ DG  +R   G+P+Y                 
Sbjct: 137 LKPENVLLDA---HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVD 193
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S GV  Y LL G  PF  E     F+ I       P+ L   ++      +  +L  +
Sbjct: 194 IWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVAT----LLMHMLQVD 249
Query: 209 PMERMTAKEALKHPWL 224
           P++R T K+  +H W 
Sbjct: 250 PLKRATIKDIREHEWF 265

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 156 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 268
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 269 LDATKRLGCEE 279

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 213 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 266

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 156 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKS 212
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 268
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 269 LDATKRLGCEE 279

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 156 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 268
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 269 LDATKRLGCEE 279

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 156 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 268
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 269 LDATKRLGCEE 279

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 213 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 266

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 157 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 216
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 217 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 270

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 25/155 (16%)
Query: 101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK---------- 150
           ++  L+P+N +++ D  +  I++ D  ++  + +G  I+  +GT  Y+            
Sbjct: 308 VYRDLKPEN-ILLDDHGH--IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTF 364
Query: 151 -----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
                +LG   Y ++ G SPF           + +   + P+E  E  SP+A+   +++L
Sbjct: 365 SPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLL 424
Query: 206 IKNPMERM-----TAKEALKHPWLMNKKQIMTRVG 235
            K+P ER+     +A+E  +HP  + KK    R+G
Sbjct: 425 CKDPAERLGCRGGSAREVKEHP--LFKKLNFKRLG 457

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 151 SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFEDISP-------------- 195
           SLG+  YV+     PF  +    E F NI    +++P +    + P              
Sbjct: 237 SLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLS 296
Query: 196 -EAKDFIAKILIKNPMERMTAKEALKHPWL 224
            E  DF+   L KNP ER+T+++ALKH WL
Sbjct: 297 NEDIDFLKLFLRKNPAERITSEDALKHEWL 326

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 159 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 215
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 271
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 272 LDATKRLGCEE 282

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 163 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 219
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP++ F    P+A+D + K+L+
Sbjct: 220 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF----PKARDLVEKLLV 275
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 276 LDATKRLGCEE 286

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 25/155 (16%)
Query: 101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK---------- 150
           ++  L+P+N +++ D  +  I++ D  ++  + +G  I+  +GT  Y+            
Sbjct: 308 VYRDLKPEN-ILLDDHGH--IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTF 364
Query: 151 -----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
                +LG   Y ++ G SPF           + +   + P+E  E  SP+A+   +++L
Sbjct: 365 SPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLL 424
Query: 206 IKNPMERM-----TAKEALKHPWLMNKKQIMTRVG 235
            K+P ER+     +A+E  +HP  + KK    R+G
Sbjct: 425 CKDPAERLGCRGGSAREVKEHP--LFKKLNFKRLG 457

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F  I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 158 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKS 214
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F  I K + DFP++ F    P+A+D + K+L+
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFF----PKARDLVEKLLV 270
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 271 LDATKRLGCEE 281

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 177 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 236
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 237 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 290

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 175 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 234
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 235 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 288

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK------------- 150
           L+  NL +  D    D+K+ DF + +++  DG   ++L GTP+Y+               
Sbjct: 168 LKLGNLFLNDDM---DVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVD 224
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y LL G  PF      ET+  I K +   P      I+P A   I ++L  +
Sbjct: 225 IWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVP----RHINPVASALIRRMLHAD 280
Query: 209 PMERMTAKEAL 219
           P  R +  E L
Sbjct: 281 PTLRPSVAELL 291

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 122 KVCDFEISRV-ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSP 165
           K+ DF + +  I +G+      GTPDY+                 ++GV  Y +L G +P
Sbjct: 164 KLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAP 223
Query: 166 FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA------KEAL 219
           F  E + + F  I   ++ +P  L ED +   K F+     KNP  R+ +         L
Sbjct: 224 FEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMT----KNPTMRLGSLTQGGEHAIL 279
Query: 220 KHPWL-------MNKKQI 230
           +HP+        +N +QI
Sbjct: 280 RHPFFKEIDWAQLNHRQI 297

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK------------- 150
           L+  NL +  D    D+K+ DF + +++  DG   ++L GTP+Y+               
Sbjct: 152 LKLGNLFLNDDM---DVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVD 208
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y LL G  PF      ET+  I K +   P      I+P A   I ++L  +
Sbjct: 209 IWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVP----RHINPVASALIRRMLHAD 264
Query: 209 PMERMTAKEAL 219
           P  R +  E L
Sbjct: 265 PTLRPSVAELL 275

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 118 NCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT 161
           + ++K+ DF + ++V  DG   + L GTP+Y+                 S+G   Y LL 
Sbjct: 151 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 210
Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           G  PF      ET+  I K +   P    + I+P A   I K+L  +P  R T  E L
Sbjct: 211 GKPPFETSCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINELL 264

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK------------- 150
           L+  NL +  D    D+K+ DF + +++  DG   + L GTP+Y+               
Sbjct: 168 LKLGNLFLNDDM---DVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVD 224
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y LL G  PF      ET+  I K +   P      I+P A   I ++L  +
Sbjct: 225 IWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVP----RHINPVASALIRRMLHAD 280
Query: 209 PMERMTAKEAL 219
           P  R +  E L
Sbjct: 281 PTLRPSVAELL 291

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEI-SRVILDGIEIRELLGTPDYVGK------------- 150
           L+  NL +  D    D+K+ DF + +++  DG   + L GTP+Y+               
Sbjct: 168 LKLGNLFLNDDM---DVKIGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVD 224
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y LL G  PF      ET+  I K +   P      I+P A   I ++L  +
Sbjct: 225 IWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVP----RHINPVASALIRRMLHAD 280
Query: 209 PMERMTAKEAL 219
           P  R +  E L
Sbjct: 281 PTLRPSVAELL 291

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK----------- 150
           L+P+N+++  D     I++ DF  ++V+            +GT  YV             
Sbjct: 161 LKPENILLNEDM---HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 217
Query: 151 ----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
               +LG   Y L+ G  PF    +   F+ I K + DFP   F    P+A+D + K+L+
Sbjct: 218 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPAAFF----PKARDLVEKLLV 273
Query: 207 KNPMERMTAKE 217
            +  +R+  +E
Sbjct: 274 LDATKRLGCEE 284

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GVT Y + TG  PF G+   + F NI K     P     D  P   D +  +L   P 
Sbjct: 198 SAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPG----DCGPPLSDLLKGMLEYEPA 253
Query: 211 ERMTAKEALKHPWLMNK 227
           +R + ++  +H W   K
Sbjct: 254 KRFSIRQIRQHSWFRKK 270

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRELLGTPDYVGK------ 150
           +  I+  L+P+N+++        IK+ DF +S+  +D   +     GT +Y+        
Sbjct: 146 LGIIYRDLKPENILLD---EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 202
Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    S GV  + +LTG  PF G+   ET   I KA+L  P  L    SPEA+  +
Sbjct: 203 GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFL----SPEAQSLL 258
Query: 202 AKILIKNPMERMTA 215
             +  +NP  R+ A
Sbjct: 259 RMLFKRNPANRLGA 272

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRELLGTPDYVGK------ 150
           +  I+  L+P+N+++        IK+ DF +S+  +D   +     GT +Y+        
Sbjct: 145 LGIIYRDLKPENILLD---EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    S GV  + +LTG  PF G+   ET   I KA+L  P  L    SPEA+  +
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFL----SPEAQSLL 257
Query: 202 AKILIKNPMERMTA 215
             +  +NP  R+ A
Sbjct: 258 RMLFKRNPANRLGA 271

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRELLGTPDYVGK------ 150
           +  I+  L+P+N+++  +     IK+ DF +S+  +D   +     GT +Y+        
Sbjct: 145 LGIIYRDLKPENILLDEE---GHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    S GV  + +LTG  PF G+   ET   I KA+L  P  L    SPEA+  +
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFL----SPEAQSLL 257
Query: 202 AKILIKNPMERMTA 215
             +  +NP  R+ A
Sbjct: 258 RMLFKRNPANRLGA 271

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 120 DIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------------SLGVTAYVLL 160
           +IK+CDF IS  ++D I      G   Y+                     SLG+T Y L 
Sbjct: 164 NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELA 223
Query: 161 TGFSPFGGETDSETFRNISKAQLDFPDELF----EDISPEAKDFIAKILIKNPMERMTAK 216
           TG  P+     +  F  +++     P +L      + SP   +F+   L K+  +R   K
Sbjct: 224 TGRFPYPKW--NSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYK 281
Query: 217 EALKHPWLMNKKQIMTRVGCSSC 239
           E LKHP+++  ++    V C  C
Sbjct: 282 ELLKHPFILMYEERAVEVACYVC 304

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++  D    +IK+ DF  S     G ++    G P Y       GK        
Sbjct: 139 LKAENLLLDAD---XNIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPEVD 195
Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P       S + ++ + K LI N
Sbjct: 196 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFY----XSTDCENLLKKFLILN 251
Query: 209 PMERMTAKEALKHPW 223
           P +R T ++  K  W
Sbjct: 252 PSKRGTLEQIXKDRW 266

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P  L     +SP  K F+ ++L+++
Sbjct: 210 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRD 266
Query: 209 PMERMTAKEALKHPWL 224
           P +R TA E LKHP+L
Sbjct: 267 PAQRATAAELLKHPFL 282

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P  L     +SP  K F+ ++L+++
Sbjct: 255 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRD 311
Query: 209 PMERMTAKEALKHPWL 224
           P +R TA E LKHP+L
Sbjct: 312 PAQRATAAELLKHPFL 327

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 121 IKVCDFEISRVILDGIEIRE-LLGTPDYVGK---------------SLGVTAYVLLTGFS 164
           +K+ DF     +   +  R+ L+GTP ++                 SLG+    ++ G  
Sbjct: 286 VKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEP 345
Query: 165 PFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKNPMERMTAKEALKHP 222
           P+  E   +  + I     + P  L     +SP  K F+ ++L+++P +R TA E LKHP
Sbjct: 346 PYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 402
Query: 223 WL 224
           +L
Sbjct: 403 FL 404

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P  L     +SP  K F+ ++L+++
Sbjct: 212 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRD 268
Query: 209 PMERMTAKEALKHPWL 224
           P +R TA E LKHP+L
Sbjct: 269 PAQRATAAELLKHPFL 284

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 8/67 (11%)
Query: 151 SLGVTAYVLLTGFSPF--GGETDS--ETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
           SLGV  Y LLTG SPF   GE +S  E  R I K++  +P E+    S  AKD I ++L+
Sbjct: 247 SLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEM----SALAKDLIQRLLM 302
Query: 207 KNPMERM 213
           K+P +R+
Sbjct: 303 KDPKKRL 309

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  ++  +  + +  +    P +L     +SP  +DF+ ++L+++
Sbjct: 226 SLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSP---PPKLKNSHKVSPVLRDFLERMLVRD 282
Query: 209 PMERMTAKEALKHPWLMN 226
           P ER TA+E L HP+L+ 
Sbjct: 283 PQERATAQELLDHPFLLQ 300

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P  L     +SP  K F+ ++L+++
Sbjct: 201 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRD 257
Query: 209 PMERMTAKEALKHPWL 224
           P +R TA E LKHP+L
Sbjct: 258 PAQRATAAELLKHPFL 273

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--FEDISPEAKDFIAKILIKN 208
           SLG+    ++ G  P+  E   +  + I     + P  L     +SP  K F+ ++L+++
Sbjct: 205 SLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPRLKNLHKVSPSLKGFLDRLLVRD 261
Query: 209 PMERMTAKEALKHPWL 224
           P +R TA E LKHP+L
Sbjct: 262 PAQRATAAELLKHPFL 277

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           +L   IS EA DF+ +IL  +PM+R+TA+EAL HP++
Sbjct: 273 QLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYM 309

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 30/146 (20%)
Query: 105 LQPQNLVMMGDFPNCDIKVCDF-EISRVILDG-IEIRELLGTPDYV----------GK-- 150
           ++P N++M  D  N  I++ DF    +++ DG ++    +GTPDY+          GK  
Sbjct: 201 IKPDNILM--DM-NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGR 257
Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEAKDF 200
                   SLGV  Y +L G +PF  E+  ET+  I   K +  FP ++  D+S  AKD 
Sbjct: 258 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQV-TDVSENAKDL 316
Query: 201 IAKILI--KNPMERMTAKEALKHPWL 224
           I +++   ++ + +   ++  KHP+ 
Sbjct: 317 IRRLICSREHRLGQNGIEDFKKHPFF 342

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCS 237
           +SPEA DF+ K+L  +   R+TA+EA++HP+     +   R+G S
Sbjct: 293 VSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSS 337

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG----IEIRELLGTPDYVGK----- 150
            I   ++P N+++        +KV DF I+R I D      +   ++GT  Y+       
Sbjct: 137 IIHRDVKPANIMISA---TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG 193
Query: 151 ----------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAKD 199
                     SLG   Y +LTG  PF G++ DS  ++++ +  +  P    E +S +   
Sbjct: 194 DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIP-PSARHEGLSADLDA 252
Query: 200 FIAKILIKNPMER-MTAKE 217
            + K L KNP  R  TA E
Sbjct: 253 VVLKALAKNPENRYQTAAE 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-51
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-51
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-49
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-49
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-48
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-46
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-46
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-46
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-44
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-41
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-41
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-40
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-40
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-40
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-40
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-40
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-39
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-39
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-39
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-39
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-38
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	3e-38
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	6e-38
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-36
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	9e-36
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-35
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-34
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-33
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-33
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-33
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-33
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-30
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	8e-29
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-27
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-26
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	7e-25
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-24
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-24
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-24
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	8e-24
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-23
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-23
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-23
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-22
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-22
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-22
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-22
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-22
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-21
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-21
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-21
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-21
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-21
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-21
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	6e-21
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-20
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-20
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-20
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-20
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-18
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	9e-18
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-17
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-17
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	7e-17
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-16
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-16
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-16
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-16
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	8e-16
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	1e-15
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-15
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-15
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-14
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-14
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-14
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	3e-14
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-14
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	5e-14
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-14
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	6e-14
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	6e-14
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	7e-14
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	8e-14
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-13
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-13
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-13
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-12
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-12
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-12
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-12
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-12
3fme_A	290	Dual specificity mitogen-activated protein kinase;	8e-12
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-11
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-11
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-11
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	9e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-10
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-10
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-10
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-09
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-08
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-08
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-08
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-08
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-08
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	4e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	6e-08
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-08
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	8e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	5e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	7e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-07
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	8e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	8e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-06
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	5e-06
3uqc_A	286	Probable conserved transmembrane protein; structur	6e-06
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	6e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	6e-06
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	7e-06
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	9e-06
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	9e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-05
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  172 bits (439), Expect = 3e-51
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 16/166 (9%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+PQN+++   +P  DIK+ DF +SR I    E+RE++GTP+Y+                
Sbjct: 157 LKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDM 216

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            ++G+ AY+LLT  SPF GE + ET+ NIS+  +D+ +E F  +S  A DFI  +L+KNP
Sbjct: 217 WNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNP 276

Query: 210 MERMTAKEALKHPWLMNKKQI-MTRVGCSSCPSIIQNQQNKKNLRK 254
            +R TA+  L H WL       +     +S  S  Q+   + +  K
Sbjct: 277 EKRPTAEICLSHSWLQQWDFENLFHPEETSSSSQTQDHSVRSSEDK 322

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  172 bits (439), Expect = 8e-51
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 23/217 (10%)

Query: 105 LQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V          G    
Sbjct: 141 LKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEAD 200

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+K 
Sbjct: 201 MWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKE 260

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVI 268
             +R+T +EAL+HPW+                   ++  N +N +K   + R  L   ++
Sbjct: 261 TRKRLTIQEALRHPWITPVDT-------QQAMVRRESVVNLENFKKQYVRRRWKLSFSIV 313

Query: 269 SASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTRE 305
           S       +L K   L+ ++  R CES        R+
Sbjct: 314 SLCNHLTRSLMKKVHLRTSEDLRNCESDTEENIARRK 350

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  168 bits (428), Expect = 1e-49
 Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 23/182 (12%)

Query: 105 LQPQNLVMMG-DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+N++++  + P   IK+ DF ++  I DG+E + + GTP++V          G    
Sbjct: 141 LKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEAD 200

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+GV  Y+LL+G SPF G+T  ET  NI+    DF +E F   S  AKDFI K+L+K 
Sbjct: 201 MWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKE 260

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVI 268
             +R+T +EAL+HPW+                   ++  N +N RK   + R  L   ++
Sbjct: 261 TRKRLTIQEALRHPWITPVDN-------QQAMVRRESVVNLENFRKQYVRRRWKLSFSIV 313

Query: 269 SA 270
           S 
Sbjct: 314 SL 315

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  165 bits (420), Expect = 9e-49
 Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 16/141 (11%)

Query: 105 LQPQNLVMM-GDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+N++++  + PN  IK+ DF I+  I  G E + + GTP++V          G    
Sbjct: 134 LKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEAD 193

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+GV  Y+LL+G SPF GET  ET  NIS    DF +E F + S  AKDFI ++L+K+
Sbjct: 194 MWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKD 253

Query: 209 PMERMTAKEALKHPWLMNKKQ 229
           P  RMT  ++L+H W+   ++
Sbjct: 254 PKRRMTIAQSLEHSWIKAIRR 274

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  164 bits (418), Expect = 4e-48
 Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 24/183 (13%)

Query: 105 LQPQN-LVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK--- 150
           L+P+N +++  + P   IK+ DF ++  I  G E + + GTP++V          G    
Sbjct: 140 LKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEAD 199

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI ++L+K+
Sbjct: 200 MWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKD 259

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR-EALFEKV 267
           P +RMT +++L+HPW+  K             S   +  N +  +K+ ++ +        
Sbjct: 260 PKKRMTIQDSLQHPWIKPKDT-------QQALSRKASAVNMEKFKKFAARKKSNNGSGGG 312

Query: 268 ISA 270
           ++ 
Sbjct: 313 LND 315

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  159 bits (405), Expect = 3e-46
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 27/192 (14%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           ++P+N+ +     +  IK+ +F  +R +  G   R L   P+Y                 
Sbjct: 128 IRPENI-IYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDM 186

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLG   YVLL+G +PF  ET+ +   NI  A+  F +E F++IS EA DF+ ++L+K  
Sbjct: 187 WSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKER 246

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
             RMTA EAL+HPWL  K              +          R+Y     +     V+S
Sbjct: 247 KSRMTASEALQHPWLKQKI-----------ERVSTKVIRTLKHRRYYHTLIKKDLNMVVS 295

Query: 270 ASKLQQENLRKS 281
           A+++      +S
Sbjct: 296 AARISCGGAIRS 307

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  161 bits (408), Expect = 3e-46
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 23/169 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+P+N+ +  +     IK+ DF ++R      +++   GTP+++                
Sbjct: 213 LKPENI-LCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDM 271

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV AY+LL+G SPF G+ D+ET  NI   + D  DE F+DIS EAK+FI+K+LIK  
Sbjct: 272 WSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEK 331

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSK 258
             R++A EALKHPWL + K         S  S  + +    + + +++K
Sbjct: 332 SWRISASEALKHPWLSDHKL-------HSRLSAQKKKNRGSDAQDFVTK 373

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  161 bits (408), Expect = 6e-46
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           ++P+N+ M        +K+ DF ++  +     ++    T ++           G     
Sbjct: 175 IKPENI-MCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDM 233

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            ++GV  YVLL+G SPF GE D ET +N+ +   +F ++ F  +SPEAKDFI  +L K P
Sbjct: 234 WAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEP 293

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
            +R+T  +AL+HPWL      +T    SS  + I+ +  +K       +          S
Sbjct: 294 RKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSS 353

Query: 270 ASKLQQENLRKSA 282
             K + +  +   
Sbjct: 354 LRKHRPQEYQIYD 366

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  158 bits (402), Expect = 8e-44
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 25/229 (10%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+P+N++      N ++K+ DF ++  +     ++   GT ++           G     
Sbjct: 281 LKPENIMFTTKRSN-ELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDM 339

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV +Y+LL+G SPFGGE D ET RN+     +  D  F  IS + KDFI K+L+ +P
Sbjct: 340 WSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADP 399

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
             RMT  +AL+HPWL             S             +R  +    +A  E +  
Sbjct: 400 NTRMTIHQALEHPWLTPGNAPGRDSQIPS--------SRYTKIRDSIKTKYDAWPEPLPP 451

Query: 270 ASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRS 318
             ++   +  +    +   + R      S              +  G+S
Sbjct: 452 LGRISNYSSLRKHRPQ-EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQS 499

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  147 bits (374), Expect = 3e-41
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+P+NL++        +K+ DF ++  + D        GTP Y+           K    
Sbjct: 154 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 213

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            + GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 214 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 273

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
            +R+TA +ALK PW+ N++++          S I  Q     L+K+ ++ +    +  I 
Sbjct: 274 KKRITADQALKVPWICNRERV---------ASAIHRQDTVDCLKKFNARRK---LKGAIL 321

Query: 270 ASKLQQENLRKSALLKYNK 288
            + +   NL        NK
Sbjct: 322 TTMIATRNLSNLGRNLLNK 340

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  149 bits (377), Expect = 8e-41
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 24/193 (12%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+N+++     +CDIK+ DF +S       ++++ +GT  Y+          +     
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVW 206

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G+ + +  + +   +  F    +  IS +AKD I K+L  +P 
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPS 266

Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS---REALFEKV 267
            R+TA + L+HPW+             +   +   +    N+R++ ++    + AL    
Sbjct: 267 LRITATQCLEHPWIQKYSSE-----TPTISDLPSLESAMTNIRQFQAEKKLAQAAL--LY 319

Query: 268 ISASKLQQENLRK 280
           +++     +  ++
Sbjct: 320 MASKLTTLDETKQ 332

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  148 bits (375), Expect = 2e-40
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 25/193 (12%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           ++P+N+++       +IK+ DF +S       ++R+ LGT  Y+          +     
Sbjct: 172 IKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVW 231

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL G+ PFGG+ D +  + + K +  F    +++IS EAK+ I  +L  +  
Sbjct: 232 SCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYN 291

Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS---REALFEKV 267
           +R TA+EAL   W+             +            N+RK+       + A+    
Sbjct: 292 KRCTAEEALNSRWIKKYANN------INKSDQKTLCGALSNMRKFEGSQKLAQAAI--LF 343

Query: 268 ISASKLQQENLRK 280
           I +     E  ++
Sbjct: 344 IGSKLTTLEERKE 356

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  143 bits (362), Expect = 3e-40
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 14/139 (10%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+N + + D P+  +K+ DF ++     G  +R  +GTP YV         G      
Sbjct: 132 LKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEW 191

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  YVLL G+ PF   TDSE    I +    FP++ + ++SP+A+  I ++L K+P 
Sbjct: 192 SAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPK 251

Query: 211 ERMTAKEALKHPWLMNKKQ 229
           +R+T+ +AL+H W   +  
Sbjct: 252 QRITSLQALEHEWFEKQLS 270

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  147 bits (373), Expect = 3e-40
 Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 25/193 (12%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+NL++     + +I++ DF +S       ++++ +GT  Y+          +     
Sbjct: 152 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVW 211

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G  + +  + + K +  F    ++ +S  AKD I K+L   P 
Sbjct: 212 STGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPS 271

Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS---REALFEKV 267
            R++A++AL H W+    +            +        N+R++       + AL    
Sbjct: 272 MRISARDALDHEWIQTYTKE------QISVDVPSLDNAILNIRQFQGTQKLAQAAL--LY 323

Query: 268 ISASKLQQENLRK 280
           + +    Q+  ++
Sbjct: 324 MGSKLTSQDETKE 336

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  147 bits (372), Expect = 5e-40
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 24/193 (12%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+NL++     +  IK+ DF +S V  +  +++E LGT  Y+          +     
Sbjct: 162 LKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVW 221

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S+GV  ++LL G+ PFGG+TD E  R + K +  F    ++++S  AKD I ++L  +  
Sbjct: 222 SIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQ 281

Query: 211 ERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS---REALFEKV 267
            R++A++AL+HPW+                 +       +N+RK+ +     + AL    
Sbjct: 282 RRISAQQALEHPWIKEMCSKKESG-----IELPSLANAIENMRKFQNSQKLAQAAL--LY 334

Query: 268 ISASKLQQENLRK 280
           +++    QE  ++
Sbjct: 335 MASKLTSQEETKE 347

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  142 bits (360), Expect = 5e-40
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+P+NL++        +K+ DF ++  + D        GTP Y+           K    
Sbjct: 131 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDI 190

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            + GV  Y+LL G+ PF  E     +  I     D+P   ++ ++PEAK  I  +L  NP
Sbjct: 191 WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNP 250

Query: 210 MERMTAKEALKHPWLMNKKQ 229
            +R+TA +ALK PW+ N+++
Sbjct: 251 KKRITADQALKVPWICNRER 270

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  141 bits (357), Expect = 1e-39
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+N++     P+  IK+ DF ++ +           GT  Y+                
Sbjct: 150 LKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIW 209

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y LLTG  PF G +  E  +  +  + ++  E    ++P+A D + ++L K+P 
Sbjct: 210 SAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVE-CRPLTPQAVDLLKQMLTKDPE 268

Query: 211 ERMTAKEALKHPWLMN 226
            R +A + L H W   
Sbjct: 269 RRPSAAQVLHHEWFKQ 284

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  142 bits (360), Expect = 2e-39
 Identities = 49/186 (26%), Positives = 96/186 (51%), Gaps = 28/186 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           L+P+NL+     P+  +K+ DF +S+++   + ++ + GTP Y           G     
Sbjct: 174 LKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDM 233

Query: 151 -SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
            S+G+  Y+LL GF PF  E  D   FR I   +  F    ++++S  AKD + K+++ +
Sbjct: 234 WSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLD 293

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR-EALFEKV 267
           P +R+T  +AL+HPW+  K             + +     +K L+++ ++ + +A  + V
Sbjct: 294 PKKRLTTFQALQHPWVTGK-----------AANFVHMDTAQKKLQEFNARRKLKAAVKAV 342

Query: 268 ISASKL 273
           +++S+L
Sbjct: 343 VASSRL 348

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  140 bits (355), Expect = 3e-39
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------GK----- 150
           L+P+N+++     +CDIK+ DF +S       ++++ +GT  Y+          +     
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVW 206

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y+LL+G  PF G+ + +  + +   +  F    +  IS +AKD I K+L  +P 
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPS 266

Query: 211 ERMTAKEALKHPWLMNKKQ 229
            R+TA + L+HPW+     
Sbjct: 267 LRITATQCLEHPWIQKYSS 285

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  139 bits (353), Expect = 2e-38
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 27/198 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILD-GIEIRELLGTPDYV----------GK--- 150
           ++P  +++     +  +K+  F ++  + + G+     +GTP ++          GK   
Sbjct: 156 VKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVD 215

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
               GV  ++LL+G  PF G T    F  I K +       +  IS  AKD + ++L+ +
Sbjct: 216 VWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLD 274

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSR-EALFEKV 267
           P ER+T  EAL HPWL  + +             I   +  + LRK+ ++ + +      
Sbjct: 275 PAERITVYEALNHPWLKERDR---------YAYKIHLPETVEQLRKFNARRKLKGAVLAA 325

Query: 268 ISASKLQQENLRKSALLK 285
           +S+ K           L 
Sbjct: 326 VSSHKFNSFYGDPPEELP 343

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  139 bits (352), Expect = 3e-38
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL-----DGIEIRELLGTPDYV----------- 148
           ++P+N +   +  + +IK+ DF +S+        +   +    GTP +V           
Sbjct: 194 IKPENFLFSTN-KSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES 252

Query: 149 -GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            G      S GV  ++LL G  PF G  D++T   +   +L F +  +  +SP A+D ++
Sbjct: 253 YGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLS 312

Query: 203 KILIKNPMERMTAKEALKHPWLMNKKQ 229
            +L +N  ER  A  AL+HPW+     
Sbjct: 313 NLLNRNVDERFDAMRALQHPWISQFSD 339

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  140 bits (355), Expect = 6e-38
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 30/203 (14%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVI-LDGIEIRELLGTPDYV----------GK--- 150
           L+P+NL++        +K+ DF ++  +  +        GTP Y+          GK   
Sbjct: 136 LKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVD 195

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             + GV  Y+LL G+ PF  E     ++ I     DFP   ++ ++PEAKD I K+L  N
Sbjct: 196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTIN 255

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVI 268
           P +R+TA EALKHPW+ ++         S+  S +  Q+    L+K+ ++ +    +  I
Sbjct: 256 PSKRITAAEALKHPWISHR---------STVASCMHRQETVDCLKKFNARRK---LKGAI 303

Query: 269 SASKLQQENL--RKSALLKYNKT 289
               L   N   RK  ++K  + 
Sbjct: 304 LTVMLATRNFSVRKQEIIKVTEQ 326

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  133 bits (338), Expect = 1e-36
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N+++  D    +IK+ DF  S  +  G ++RE+ GTP Y+                
Sbjct: 150 LKPENILLDDD---MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGY 206

Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     S GV  Y LL G  PF         R I      F    ++D S   KD +++
Sbjct: 207 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSR 266

Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L+  P +R TA+EAL HP+ 
Sbjct: 267 FLVVQPQKRYTAEEALAHPFF 287

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  132 bits (333), Expect = 9e-36
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-------------GK- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+              + 
Sbjct: 140 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 199

Query: 151 ----SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF    T       I+  + +F  E++ ++S +A D + K+L
Sbjct: 200 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 259

Query: 206 IKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSK 258
           + +P  R T +EAL+HPWL ++              ++  +     L + L++
Sbjct: 260 VVDPKARFTTEEALRHPWLQDEDMK------RKFQDLLSEENESTALPQVLAQ 306

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  131 bits (332), Expect = 3e-35
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 24/141 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P+N+++  +     I++ DF  S  +  G ++REL GTP Y+                
Sbjct: 226 LKPENILLDDNMQ---IRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGY 282

Query: 149 GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
           GK     + GV  + LL G  PF         R I + Q  F    ++D S   KD I++
Sbjct: 283 GKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISR 342

Query: 204 ILIKNPMERMTAKEALKHPWL 224
           +L  +P  R+TA++AL+HP+ 
Sbjct: 343 LLQVDPEARLTAEQALQHPFF 363

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  130 bits (328), Expect = 2e-34
 Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 37/222 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV           K    
Sbjct: 187 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 246

Query: 151 -SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF               I   Q +FP+  + ++S E K  I  +L
Sbjct: 247 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 306

Query: 206 IKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFE 265
              P +RMT  E + HPW+M   ++         P    +        K   +  +    
Sbjct: 307 KTEPTQRMTITEFMNHPWIMQSTKV---------PQTPLHTSRVLKEDKERWEDVKEEMT 357

Query: 266 KVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKS 307
             ++  ++  E +         K +++ ++   L+ K R+K+
Sbjct: 358 SALATMRVDYEQI---------KIKKIEDASNPLLLKRRKKA 390

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  126 bits (318), Expect = 2e-33
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELLGTPDYV----------GK--- 150
           L+P+NL+   +  N +IK+ DF  +R+   D   ++    T  Y            +   
Sbjct: 132 LKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCD 191

Query: 151 --SLGVTAYVLLTGFSPFGGETDS-------ETFRNISKAQLDFPDELFEDISPEAKDFI 201
             SLGV  Y +L+G  PF     S       E  + I K    F  E ++++S EAKD I
Sbjct: 192 LWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLI 251

Query: 202 AKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK 254
             +L  +P +R+       + WL +  Q+ +    +              ++ 
Sbjct: 252 QGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGAAVHTCVKA 304

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  127 bits (322), Expect = 2e-33
 Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 19/142 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-------------GK- 150
           L+P+N+++     +C IK+ DF  S+++ +   +R L GTP Y+              + 
Sbjct: 265 LKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 324

Query: 151 ----SLGVTAYVLLTGFSPFGGE-TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
               SLGV  ++ L+G+ PF    T       I+  + +F  E++ ++S +A D + K+L
Sbjct: 325 VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLL 384

Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +P  R T +EAL+HPWL ++
Sbjct: 385 VVDPKARFTTEEALRHPWLQDE 406

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  125 bits (317), Expect = 2e-33
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV----------GK---- 150
           ++P+NL+      +  +K+ DF  ++       ++    TP YV           K    
Sbjct: 154 VKPENLLYTSKEKDAVLKLTDFGFAKETTQN-ALQTPCYTPYYVAPEVLGPEKYDKSCDM 212

Query: 151 -SLGVTAYVLLTGFSPFGGETDSET----FRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL GF PF   T         R I   Q  FP+  + ++S +AK  I  +L
Sbjct: 213 WSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 272

Query: 206 IKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFE 265
             +P ER+T  + + HPW+     +         P  +   +  +  + +  + +E +  
Sbjct: 273 KTDPTERLTITQFMNHPWINQSMVV------PQTP--LHTARVLQEDKDHWDEVKEEMT- 323

Query: 266 KVISASKLQQENL 278
             ++  ++  + +
Sbjct: 324 SALATMRVDYDQV 336

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  125 bits (316), Expect = 5e-33
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 38/216 (17%)

Query: 105 LQPQNLVMMGDFPNCD-IKVCDFEISRVILDGIEI-RELLGTPDYV----------GK-- 150
           L+P N++ + +  N + I++CDF  ++ +     +      T ++V              
Sbjct: 142 LKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAAC 201

Query: 151 ---SLGVTAYVLLTGFSPF---GGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
              SLGV  Y +LTG++PF     +T  E    I   +       +  +S  AKD ++K+
Sbjct: 202 DIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKM 261

Query: 205 LIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
           L  +P +R+TA   L+HPW+++  Q+         P    N+Q+  +L K       A+ 
Sbjct: 262 LHVDPHQRLTAALVLRHPWIVHWDQL---------PQYQLNRQDAPHLVK------GAMA 306

Query: 265 EKVISASKLQQENLR---KSALLKYNKTRRLCESQM 297
               + ++ Q   L    +S L +    +++  + +
Sbjct: 307 ATYSALNRNQSPVLEPVGRSTLAQRRGIKKITSTAL 342

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score =  116 bits (292), Expect = 4e-30
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 29/177 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----SLGVTAYVL 159
           ++P+NL+     PN  +K+ DF  ++         E  G   Y  K     SLGV  Y+L
Sbjct: 143 VKPENLLYTSKRPNAILKLTDFGFAK---------ETTGEK-Y-DKSCDMWSLGVIMYIL 191

Query: 160 LTGFSPFGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA 215
           L G+ PF               I   Q +FP+  + ++S E K  I  +L   P +RMT 
Sbjct: 192 LCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI 251

Query: 216 KEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVISASK 272
            E + HPW+M   ++         P    +        K   +  +      ++  +
Sbjct: 252 TEFMNHPWIMQSTKV---------PQTPLHTSRVLKEDKERWEDVKEEMTSALATMR 299

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  113 bits (284), Expect = 8e-29
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 43/166 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL--------GTPDYV-------- 148
           L+P+N++         +K+CDF++   I    +   +         G+ +Y+        
Sbjct: 137 LKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAF 196

Query: 149 -------GK-----SLGVTAYVLLTGFSPFGGETDSET---------------FRNISKA 181
                   K     SLGV  Y+LL+G+ PF G   S+                F +I + 
Sbjct: 197 SEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEG 256

Query: 182 QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK 227
           + +FPD+ +  IS  AKD I+K+L+++  +R++A + L+HPW+   
Sbjct: 257 KYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC 302

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  107 bits (269), Expect = 5e-27
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 23/134 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL ++G     ++K+ DF  S V        +L GT DY+      G+        
Sbjct: 135 IKPENL-LLGS--AGELKIADFGWS-VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 190

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD     ++  A+D I+++L  NP
Sbjct: 191 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD----FVTEGARDLISRLLKHNP 246

Query: 210 MERMTAKEALKHPW 223
            +R   +E L+HPW
Sbjct: 247 SQRPMLREVLEHPW 260

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  106 bits (267), Expect = 1e-26
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 24/144 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL+M   +   ++K+ DF  S V    +  R + GT DY+      GK        
Sbjct: 140 IKPENLLM--GY-KGELKIADFGWS-VHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDL 195

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
              GV  Y  L G  PF   + +ET R I    L FP      +S  +KD I+K+L  +P
Sbjct: 196 WCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPP----FLSDGSKDLISKLLRYHP 251

Query: 210 MERMTAKEALKHPW-LMNKKQIMT 232
            +R+  K  ++HPW   N ++++ 
Sbjct: 252 PQRLPLKGVMEHPWVKANSRRVLP 275

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  101 bits (254), Expect = 7e-25
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL-GTPDYV------GK------- 150
           L   NL ++    N +IK+ DF ++  +    E    L GTP+Y+               
Sbjct: 138 LTLSNL-LLTR--NMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESD 194

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y LL G  PF  +T   T   +  A  + P      +S EAKD I ++L +N
Sbjct: 195 VWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPS----FLSIEAKDLIHQLLRRN 250

Query: 209 PMERMTAKEALKHPWLMN 226
           P +R++    L HP++  
Sbjct: 251 PADRLSLSSVLDHPFMSR 268

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  100 bits (251), Expect = 3e-24
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 36/156 (23%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL---------------GTPDYV- 148
           L+P N+ +     + ++K+ DF +++ +   ++I +L                GT  YV 
Sbjct: 142 LKPMNIFIDE---SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVA 198

Query: 149 -----GK----------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI 193
                G           SLG+  + ++       G       + +    ++FP +  ++ 
Sbjct: 199 TEVLDGTGHYNEKIDMYSLGIIFFEMIYP--FSTGMERVNILKKLRSVSIEFPPDFDDNK 256

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ 229
               K  I  ++  +P +R  A+  L   WL  K Q
Sbjct: 257 MKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVKHQ 292

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 99.6 bits (249), Expect = 4e-24
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYV------GK------- 150
           L+  NL  + +  + ++K+ DF ++ +V  DG   + L GTP+Y+       K       
Sbjct: 141 LKLGNL-FLNE--DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVD 197

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+G   Y LL G  PF      ET+  I K +   P      I+P A   I K+L  +
Sbjct: 198 VWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK----HINPVAASLIQKMLQTD 253

Query: 209 PMERMTAKEALKHPW 223
           P  R T  E L   +
Sbjct: 254 PTARPTINELLNDEF 268

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  100 bits (251), Expect = 5e-24
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 37/155 (23%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P N++M  D  N  +K+ DF  S  ++D  +I+   GT +++       +        
Sbjct: 178 VKPSNILM--DK-NGRVKLSDFGESEYMVDK-KIKGSRGTYEFMPPEFFSNESSYNGAKV 233

Query: 151 ---SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFED-------------- 192
              SLG+  YV+     PF  +    E F NI    +++P +                  
Sbjct: 234 DIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNN 293

Query: 193 -ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN 226
            +S E  DF+   L KNP ER+T+++ALKH WL +
Sbjct: 294 FLSNEDIDFLKLFLRKNPAERITSEDALKHEWLAD 328

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  101 bits (252), Expect = 8e-24
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 105 LQPQN--LVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV---------- 148
           L+P N  + M          + DF + + +  G           GT  ++          
Sbjct: 144 LKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCK 203

Query: 149 ---GK-----SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
                     S G   Y +++ G  PFG     +    +    LD      +     A++
Sbjct: 204 ENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHP-EKHEDVIARE 262

Query: 200 FIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS 259
            I K++  +P +R +AK  LKHP+  + ++ + +        I +   +   +++     
Sbjct: 263 LIEKMIAMDPQKRPSAKHVLKHPFFWSLEKQL-QFFQDVSDRIEKESLDGPIVKQLERGG 321

Query: 260 REALFEKVISA-SKLQQENLRKSALLKYNKTRRL 292
           R  +        +   Q +LRK    K    R L
Sbjct: 322 RAVVKMDWRENITVPLQTDLRKFRTYKGGSVRDL 355

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 23/187 (12%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +N ++ G  P   +K+CDF  S+  +   + +  +GTP Y+       +        
Sbjct: 142 LKLENTLLDGS-PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIAD 200

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRN----ISKAQLDFPDELFEDISPEAKDFIAKI 204
             S GVT YV+L G  PF    +   +R     I   +   PD++   ISPE    I++I
Sbjct: 201 VWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIR--ISPECCHLISRI 258

Query: 205 LIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALF 264
            + +P  R++  E   H W +           ++     + +Q  ++L   +    EA  
Sbjct: 259 FVADPATRISIPEIKTHSWFLKNLPADLMNESNTGSQFQEPEQPMQSLDTIMQIISEATI 318

Query: 265 EKVISAS 271
             V +  
Sbjct: 319 PAVRNRC 325

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 24/153 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEIS-RVILDGIEIRELLGTPDYV------GK------- 150
           L+  NL  + +  + ++K+ DF ++ +V  DG   + L GTP+Y+       K       
Sbjct: 167 LKLGNL-FLNE--DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVD 223

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             S+G   Y LL G  PF      ET+  I K +   P      I+P A   I K+L  +
Sbjct: 224 VWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK----HINPVAASLIQKMLQTD 279

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPS 241
           P  R T  E L   +      I  R+  +    
Sbjct: 280 PTARPTINELLNDEF-FTSGYIPARLPITCLTI 311

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 98.6 bits (245), Expect = 3e-23
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 27/147 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
             P NL +M   P+  + + D         G           Y                 
Sbjct: 220 FTPDNLFIM---PDGRLMLGDVSALWK--VGTRGPASSVPVTYAPREFLNASTATFTHAL 274

Query: 151 ---SLGVTAYVLLTGFSPFGGETDS--ETFRNISKAQLDFPDELFE---DISPEAKDFIA 202
               LG++ Y +   F PFG  T     +++  S          F     +    K  I 
Sbjct: 275 NAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIG 334

Query: 203 KILIKNPMERMTAKEALKHPWLMNKKQ 229
           + L  +   R+   EA++ P  +  + 
Sbjct: 335 RFLNFDRRRRLLPLEAMETPEFLQLQN 361

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 23/137 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+ +NL++     + +IK+ DF  S     G ++    G P Y       GK        
Sbjct: 140 LKAENLLL---DADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVD 196

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGV  Y L++G  PF G+   E    + + +   P  +    S + ++ + + L+ N
Sbjct: 197 VWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYM----STDCENLLKRFLVLN 252

Query: 209 PMERMTAKEALKHPWLM 225
           P++R T ++ +K  W+ 
Sbjct: 253 PIKRGTLEQIMKDRWIN 269

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 95.2 bits (237), Expect = 4e-22
 Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 57/235 (24%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDG---IEIRELLGTPDY-------------- 147
           L+P N +++    +  +K+ DF I+  +      +     +GT +Y              
Sbjct: 134 LKPANFLIV----DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRE 189

Query: 148 -------VGK-----SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDIS 194
                  +       SLG   Y +  G +PF    +       I     +      +   
Sbjct: 190 NGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFP--DIPE 247

Query: 195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRK 254
            + +D +   L ++P +R++  E L HP++                     Q     + +
Sbjct: 248 KDLQDVLKCCLKRDPKQRISIPELLAHPYV---------------------QIQTHPVNQ 286

Query: 255 YLSKSREALFEKVISASKLQQENLRKSALLKYNKTRRLCESQMSLVSKTREKSLG 309
               + E +   +     L   N    A     +     ES  S  SKT EK  G
Sbjct: 287 MAKGTTEEMKYVLGQLVGLNSPNSILKAAKTLYEHYSGGESHNSSSSKTFEKKRG 341

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 93.9 bits (234), Expect = 5e-22
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 30/142 (21%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------------ 148
           ++P NL++     +  IK+ DF +S           LL    GTP ++            
Sbjct: 163 IKPSNLLVGE---DGHIKIADFGVSNEFKGS---DALLSNTVGTPAFMAPESLSETRKIF 216

Query: 149 -GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
            GK     ++GVT Y  + G  PF  E        I    L+FPD    DI+ + KD I 
Sbjct: 217 SGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPD--QPDIAEDLKDLIT 274

Query: 203 KILIKNPMERMTAKEALKHPWL 224
           ++L KNP  R+   E   HPW+
Sbjct: 275 RMLDKNPESRIVVPEIKLHPWV 296

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 43/166 (25%)

Query: 105 LQPQNL----------VMMGDFPNCDIKVCDFEISRVILDG-----IEIRELLGTPDYV- 148
           L+PQN+                 N  I + DF + + +  G       +    GT  +  
Sbjct: 141 LKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRA 200

Query: 149 ----------------GK-----SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFP 186
                            +     S+G   Y +L+ G  PFG +   E+  NI +      
Sbjct: 201 PELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES--NIIRGIFSLD 258

Query: 187 DELF---EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ 229
           +        +  EA D I++++  +P++R TA + L+HP    K +
Sbjct: 259 EMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSK 304

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 93.9 bits (234), Expect = 7e-22
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 40/157 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDG---IEIRELLGTPDY-------------- 147
           L+P N +      +  +K+ DF I+  +      +     +GT +Y              
Sbjct: 153 LKPANFL----IVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRE 208

Query: 148 -------VGK-----SLGVTAYVLLTGFSPFGGETDS-ETFRNI--SKAQLDFPDELFED 192
                  +       SLG   Y +  G +PF    +       I     +++FPD     
Sbjct: 209 NGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPD----I 264

Query: 193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ 229
              + +D +   L ++P +R++  E L HP++  +  
Sbjct: 265 PEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH 301

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 93.5 bits (232), Expect = 2e-21
 Identities = 17/146 (11%), Positives = 40/146 (27%), Gaps = 40/146 (27%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------- 148
           L+P ++V+        + +  FE      DG        +  +                 
Sbjct: 232 LRPVDIVLDQR---GGVFLTGFEHLV--RDG-ARVVSSVSRGFEPPELEARRATISYHRD 285

Query: 149 -----GK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
                       +LG+  Y +     P   +        I ++         ++I    +
Sbjct: 286 RRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRSC--------KNIPQPVR 337

Query: 199 DFIAKILIKNPMERMTAKEALKHPWL 224
             +   L     +R+   +A++ P  
Sbjct: 338 ALLEGFLRYPKEDRLLPLQAMETPEY 363

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 42/218 (19%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDG---IEIRELLGTPDY-------------- 147
           L+P N +++    +  +K+ DF I+  +      +     +G  +Y              
Sbjct: 181 LKPANFLIV----DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRE 236

Query: 148 -------VGK-----SLGVTAYVLLTGFSPFGGETDS-ETFRNI--SKAQLDFPDELFED 192
                  +       SLG   Y +  G +PF    +       I     +++FPD     
Sbjct: 237 NGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPD----I 292

Query: 193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSI--IQNQQNKK 250
              + +D +   L ++P +R++  E L HP++  +   + ++   +   +  +  Q    
Sbjct: 293 PEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAKGTTEEMKYVLGQLVGL 352

Query: 251 NLRKYLSKSREALFEKVISASKLQQENLRKSALLKYNK 288
           N    + K+ + L+E           + +     +  K
Sbjct: 353 NSPNSILKAAKTLYEHYSGGESHNSSSSKTFEKKRGKK 390

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 91.1 bits (227), Expect = 3e-21
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 31/141 (21%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           L+P+N+++  D  + + K+ DF +S ++ DG    E L    G+P+Y       G+    
Sbjct: 137 LKPENVLL--D-AHMNAKIADFGLSNMMSDG----EFLRTSCGSPNYAAPEVISGRLYAG 189

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 S GV  Y LL G  PF  E     F+ I       P+ L    +      +  +
Sbjct: 190 PEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYL----NRSVATLLMHM 245

Query: 205 LIKNPMERMTAKEALKHPWLM 225
           L  +P++R T K+  +H W  
Sbjct: 246 LQVDPLKRATIKDIREHEWFK 266

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 91.7 bits (228), Expect = 4e-21
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 49/176 (27%)

Query: 105 LQPQN-LVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV--------------G 149
           ++P N + ++G+      K+ DF  +R + D  +   L GT +Y+               
Sbjct: 138 IKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 150 K---------SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQ-------------- 182
           K         S+GVT Y   TG  PF    G   + E    I   +              
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENG 257

Query: 183 -------LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM 231
                  +     L   +       +A IL  +  +     +       +  +   
Sbjct: 258 PIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRGNS 313

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 92.4 bits (229), Expect = 6e-21
 Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 33/142 (23%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR--ELLGTPDYVGK------------ 150
           L+P ++V+        + +  FE                   P+   +            
Sbjct: 237 LRPVDIVLDQR---GGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTL 293

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
                   +LG+  Y +     P   +        I      F     ++I    +  + 
Sbjct: 294 MTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWI------FRSC--KNIPQPVRALLE 345

Query: 203 KILIKNPMERMTAKEALKHPWL 224
             L     +R+   +A++ P  
Sbjct: 346 GFLRYPKEDRLLPLQAMETPEY 367

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 90.3 bits (225), Expect = 6e-21
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL---GTPDYV------GK----- 150
           ++P+NL++  D    ++K+ DF ++ V       R L    GT  YV       +     
Sbjct: 131 IKPENLLL--D-ERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAE 187

Query: 151 -----SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                S G+    +L G  P+   +DS + + +  + +       ++ I       + KI
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP--WKKIDSAPLALLHKI 245

Query: 205 LIKNPMERMTAKEALKHPW 223
           L++NP  R+T  +  K  W
Sbjct: 246 LVENPSARITIPDIKKDRW 264

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 31/140 (22%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           L+P+NL++  D  N ++K+ DF +S ++ DG      L    G+P+Y       GK    
Sbjct: 134 LKPENLLL--D-DNLNVKIADFGLSNIMTDG----NFLKTSCGSPNYAAPEVINGKLYAG 186

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 S G+  YV+L G  PF  E     F+ ++      PD L    SP A+  I ++
Sbjct: 187 PEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFL----SPGAQSLIRRM 242

Query: 205 LIKNPMERMTAKEALKHPWL 224
           ++ +PM+R+T +E  + PW 
Sbjct: 243 IVADPMQRITIQEIRRDPWF 262

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL---GTPDYV------GK----- 150
           ++P+NL++  D    ++K+ DF ++ V       R L    GT  YV       +     
Sbjct: 131 IKPENLLL--D-ERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAE 187

Query: 151 -----SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                S G+    +L G  P+   +DS + + +  + +       ++ I       + KI
Sbjct: 188 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP--WKKIDSAPLALLHKI 245

Query: 205 LIKNPMERMTAKEALKHPW 223
           L++NP  R+T  +  K  W
Sbjct: 246 LVENPSARITIPDIKKDRW 264

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 49/239 (20%), Positives = 94/239 (39%), Gaps = 38/239 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           L+P+N+++  D  + + K+ DF +S ++ DG    E L    G+P+Y       G+    
Sbjct: 142 LKPENVLL--D-AHMNAKIADFGLSNMMSDG----EFLRTSCGSPNYAAPEVISGRLYAG 194

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 S GV  Y LL G  PF  +     F+ I       P  L    +P     +  +
Sbjct: 195 PEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYL----NPSVISLLKHM 250

Query: 205 LIKNPMERMTAKEALKHPWL-MNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREAL 263
           L  +PM+R T K+  +H W   +  + +     S   ++I ++   K + +    S E +
Sbjct: 251 LQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMIDDEAL-KEVCEKFECSEEEV 309

Query: 264 FEKVISASKLQQENLRKSA--LLKYNKTRRLCESQMSLVSKTREKSLGDMAISLGRSKE 320
              + + +    ++    A  L+  N+          L +   +  L D  ++    + 
Sbjct: 310 LSCLYNRNH---QDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPER 365

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 29/142 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           ++P NL++        +K+    ++   L      +      G+P +       G     
Sbjct: 135 IKPGNLLL--T-TGGTLKISALGVAE-ALHPFAADDTCRTSQGSPAFQPPEIANGLDTFS 190

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S GVT Y + TG  PF G+   + F NI K     P     D  P   D +  
Sbjct: 191 GFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPG----DCGPPLSDLLKG 246

Query: 204 ILIKNPMERMTAKEALKHPWLM 225
           +L   P +R + ++  +H W  
Sbjct: 247 MLEYEPAKRFSIRQIRQHSWFR 268

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 29/137 (21%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++ +N+V+     +  IK+ DF  +  +  G       GT +Y       G         
Sbjct: 156 IKDENIVI---AEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELE 212

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLGVT Y L+   +PF             +A +  P  +    S E    ++ +L   
Sbjct: 213 MWSLGVTLYTLVFEENPF------CELEETVEAAIHPPYLV----SKELMSLVSGLLQPV 262

Query: 209 PMERMTAKEALKHPWLM 225
           P  R T ++ +  PW+ 
Sbjct: 263 PERRTTLEKLVTDPWVT 279

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           ++ +N+++  D      K+ DF    ++ D            GT  Y             
Sbjct: 165 IKDENILI--DLRRGCAKLIDFGSGALLHDE-----PYTDFDGTRVYSPPEWISRHQYHA 217

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 SLG+  Y ++ G  PF  +      + I +A+L FP  +    SP+    I + 
Sbjct: 218 LPATVWSLGILLYDMVCGDIPFERD------QEILEAELHFPAHV----SPDCCALIRRC 267

Query: 205 LIKNPMERMTAKEALKHPWL 224
           L   P  R + +E L  PW+
Sbjct: 268 LAPKPSSRPSLEEILLDPWM 287

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 82.0 bits (203), Expect = 9e-18
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 21/123 (17%)

Query: 117 PNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK--------------SLGVTAYVLLTG 162
           P    K+ DF +   +          G P Y+                SLG+T   +   
Sbjct: 192 PRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACN 251

Query: 163 FS-PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH 221
              P GGE   +  +         P E    +S E +  +  +L  +P  R TA+  L  
Sbjct: 252 MELPHGGEGWQQLRQGY------LPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305

Query: 222 PWL 224
           P L
Sbjct: 306 PVL 308

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYV------GK---- 150
           ++ +N+++  D    ++K+ DF    ++ D      +     GT  Y             
Sbjct: 175 IKDENILI--DLNRGELKLIDFGSGALLKDT-----VYTDFDGTRVYSPPEWIRYHRYHG 227

Query: 151 ------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                 SLG+  Y ++ G  PF  +        I + Q+ F   +    S E +  I   
Sbjct: 228 RSAAVWSLGILLYDMVCGDIPFEHD------EEIIRGQVFFRQRV----SSECQHLIRWC 277

Query: 205 LIKNPMERMTAKEALKHPWL 224
           L   P +R T +E   HPW+
Sbjct: 278 LALRPSDRPTFEEIQNHPWM 297

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYV-------------GK-----SLGVTAYVLLTG 162
           + + DF I+ ++    +I  + GT  Y+                    SLGVTAY LL G
Sbjct: 154 VHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRG 213

Query: 163 FSPFGGETDS---ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
             P+   + +   E         + +P       S E    + K+L  NP +R +    +
Sbjct: 214 RRPYHIRSSTSSKEIVHTFETTVVTYPS----AWSQEMVSLLKKLLEPNPDQRFSQLSDV 269

Query: 220 K-HPWL 224
           +  P++
Sbjct: 270 QNFPYM 275

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 22/141 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE-LLGTPDYV------GK------- 150
           L+P N+ + G     ++K+ DF ++R++       +  +GTP Y+               
Sbjct: 142 LKPANVFLDGK---QNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSD 198

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y L     PF   +  E    I + +      +    S E  + I ++L   
Sbjct: 199 IWSLGCLLYELCALMPPFTAFSQKELAGKIREGK---FRRIPYRYSDELNEIITRMLNLK 255

Query: 209 PMERMTAKEALKHPWLMNKKQ 229
              R + +E L++P ++    
Sbjct: 256 DYHRPSVEEILENPLILEHHH 276

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 28/127 (22%)

Query: 121 IKVCDFEISRVILDGIEIRE---LLGTPDYV----------GK-----SLGVTAYVLLTG 162
           I++ DF  ++V+    +       +GT  YV           K     +LG   Y L+ G
Sbjct: 169 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

Query: 163 FSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT------AK 216
             PF    +   F+ I K + DFP++      P+A+D + K+L+ +  +R+         
Sbjct: 229 LPPFRAGNEYLIFQKIIKLEYDFPEKF----FPKARDLVEKLLVLDATKRLGCEEMEGYG 284

Query: 217 EALKHPW 223
               HP+
Sbjct: 285 PLKAHPF 291

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 52/206 (25%)

Query: 105 LQPQN-LVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV--------------G 149
           ++P N + ++G+      K+ DF  +R + D  +   L GT +Y+               
Sbjct: 138 IKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 150 K---------SLGVTAYVLLTGFSPF----GGETDSETFRNISKAQ-------------- 182
           K         S+GVT Y   TG  PF    G   + E    I   +              
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENG 257

Query: 183 -------LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVG 235
                  +     L   +       +A IL  +  +     +       +  + ++    
Sbjct: 258 PIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRMVIHVFS 317

Query: 236 CSSCPSI---IQNQQNKKNLRKYLSK 258
                +    I +        + + K
Sbjct: 318 LQQMTAHKIYIHSYNTATIFHELVYK 343

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 28/174 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE-LLGTPDYV------GK------- 150
           ++ QN+ +  D     +++ DF I+RV+   +E+    +GTP Y+       K       
Sbjct: 151 IKSQNIFLTKDG---TVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSD 207

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             +LG   Y L T    F   +       I          +    S + +  ++++  +N
Sbjct: 208 IWALGCVLYELCTLKHAFEAGSMKNLVLKIISGS---FPPVSLHYSYDLRSLVSQLFKRN 264

Query: 209 PMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREA 262
           P +R +    L+  ++  + +          P +I  +   K   K+ S+   A
Sbjct: 265 PRDRPSVNSILEKGFIAKRIEKFLS------PQLIAEEFCLKTFSKFGSQPIPA 312

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 78.6 bits (193), Expect = 6e-16
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 35/155 (22%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P+N+V+         K+ D   ++ +  G    E +GT  Y+       K        
Sbjct: 147 LKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDY 206

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF--------------------PDEL 189
            S G  A+  +TGF PF        +    + + +                     P+ L
Sbjct: 207 WSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHL 266

Query: 190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
              ++ + + ++  +L+ +  +R T  +       
Sbjct: 267 SGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCF 301

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 76.8 bits (190), Expect = 8e-16
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 25/124 (20%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           +K+ DF + +  I DG       GT +Y+           +     SLG   Y +LTG  
Sbjct: 160 VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAP 219

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF GE   +T   I K +L+ P  L    + EA+D + K+L +N   R+      A E  
Sbjct: 220 PFTGENRKKTIDKILKCKLNLPPYL----TQEARDLLKKLLKRNAASRLGAGPGDAGEVQ 275

Query: 220 KHPW 223
            HP+
Sbjct: 276 AHPF 279

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)

Query: 121 IKVCDFEISR-VILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF + +  +L   +     GTPDY+                 S GV  Y +L G S
Sbjct: 157 IKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQS 216

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK-HPW 223
           PF G+ + E F +I      +P  L      EAKD + K+ ++ P +R+  +  ++ HP 
Sbjct: 217 PFHGQDEEELFHSIRMDNPFYPRWL----EKEAKDLLVKLFVREPEKRLGVRGDIRQHPL 272

Query: 224 --------LMNKK 228
                   L  K+
Sbjct: 273 FREINWEELERKE 285

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 25/124 (20%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF +S+  I    +     GT +Y+           +     S GV  + +LTG  
Sbjct: 165 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF G+   ET   I KA+L  P  L    SPEA+  +  +  +NP  R+       +E  
Sbjct: 225 PFQGKDRKETMTMILKAKLGMPQFL----SPEAQSLLRMLFKRNPANRLGAGPDGVEEIK 280

Query: 220 KHPW 223
           +H +
Sbjct: 281 RHSF 284

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 26/140 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+P N + + D     +K+ DF +   + +  +     GT  Y+       +        
Sbjct: 148 LKPSN-IFLVD--TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDL 204

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +LG+    LL           S+ F ++    +       +    + K  + K+L K P
Sbjct: 205 YALGLILAELLHVCDTA--FETSKFFTDLRDGIIS------DIFDKKEKTLLQKLLSKKP 256

Query: 210 MERMTAKEALKHPWLMNKKQ 229
            +R    E L+   +  K  
Sbjct: 257 EDRPNTSEILRTLTVWKKSP 276

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 25/124 (20%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF + +  I DG  ++   GTP+Y+          G+      LGV  Y ++ G  
Sbjct: 288 IKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 347

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF  +   + F  I   ++ FP  L     PEAK  ++ +L K+P +R+      AKE +
Sbjct: 348 PFYNQDHEKLFELILMEEIRFPRTL----GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIM 403

Query: 220 KHPW 223
           +H +
Sbjct: 404 QHRF 407

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 33/137 (24%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF + +  I DG  ++   GTP+Y+          G+      LGV  Y ++ G  
Sbjct: 144 IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 203

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF  +     F  I   ++ FP  L    SPEAK  +A +L K+P +R+      AKE +
Sbjct: 204 PFYNQDHERLFELILMEEIRFPRTL----SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVM 259

Query: 220 KHPW--------LMNKK 228
           +H +        ++ KK
Sbjct: 260 EHRFFLSINWQDVVQKK 276

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 121 IKVCDFEIS-RVILDGIEI-RELLGTPDYV--------------GK-----SLGVTAYVL 159
           +K+ DF    ++  +G+      +GTPDY+              G+     S+GV  Y +
Sbjct: 207 LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM 266

Query: 160 LTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT---AK 216
           L G +PF  ++   T+  I   +         DIS EAK+ I    + +   R+     +
Sbjct: 267 LVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICA-FLTDREVRLGRNGVE 325

Query: 217 EALKHPW 223
           E  +H +
Sbjct: 326 EIKRHLF 332

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 33/137 (24%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF + +  I DG+  +   GTPDY+          GK     + GV  Y +L G +
Sbjct: 160 IKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA 219

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF GE + E F++I +  + +P  +    S EA      ++ K+P +R+       ++  
Sbjct: 220 PFEGEDEDELFQSIMEHNVAYPKSM----SKEAVAICKGLMTKHPGKRLGCGPEGERDIK 275

Query: 220 KHPW--------LMNKK 228
           +H +        L  K+
Sbjct: 276 EHAFFRYIDWEKLERKE 292

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 26/123 (21%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFSP 165
           I+V DF  ++ +        L GTP+ +           K     +LGV  Y +  G+ P
Sbjct: 180 IQVTDFGFAKRVKG--RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237

Query: 166 FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEALK 220
           F  +   + +  I   ++ FP       S + KD +  +L  +  +R         +   
Sbjct: 238 FFADQPIQIYEKIVSGKVRFPS----HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293

Query: 221 HPW 223
           H W
Sbjct: 294 HKW 296

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 31/132 (23%)

Query: 121 IKVCDFEIS-RVILDGIEIRELL-GTPDYV-----------------GK-----SLGVTA 156
           I++ DF    ++  DG     +  GTPDY+                 G      +LGV A
Sbjct: 201 IRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFA 260

Query: 157 YVLLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT 214
           Y +  G +PF  ++ +ET+  I   K  L  P    E +  EA+DFI + L+  P  R+ 
Sbjct: 261 YEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVD-EGVPEEARDFIQR-LLCPPETRLG 318

Query: 215 ---AKEALKHPW 223
              A +   HP+
Sbjct: 319 RGGAGDFRTHPF 330

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 29/130 (22%)

Query: 121 IKVCDFEIS-RVILDGIEIRELL-GTPDYV---------------GK-----SLGVTAYV 158
           I++ DF    +++ DG     +  GTPDY+               G      SLGV  Y 
Sbjct: 214 IRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYE 273

Query: 159 LLTGFSPFGGETDSETFRNI--SKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMT-- 214
           +L G +PF  E+  ET+  I   K +  FP ++  D+S  AKD I + LI +   R+   
Sbjct: 274 MLYGETPFYAESLVETYGKIMNHKERFQFPTQV-TDVSENAKDLIRR-LICSREHRLGQN 331

Query: 215 -AKEALKHPW 223
             ++  KHP+
Sbjct: 332 GIEDFKKHPF 341

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 71.1 bits (175), Expect = 6e-14
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 34/138 (24%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
            K+ DF + +  I +G+      GTPDY+          G      ++GV  Y +L G +
Sbjct: 163 CKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHA 222

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF  E + + F  I   ++ +P  L      +A   +   + KNP  R+       + A+
Sbjct: 223 PFEAENEDDLFEAILNDEVVYPTWL----HEDATGILKSFMTKNPTMRLGSLTQGGEHAI 278

Query: 220 K-HPW--------LMNKK 228
             HP+        L +++
Sbjct: 279 LRHPFFKEIDWAQLNHRQ 296

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 72.4 bits (177), Expect = 6e-14
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 33/137 (24%)

Query: 121 IKVCDFEISR-VILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ DF + +  I DG+  +   GTPDY+          GK     + GV  Y +L G +
Sbjct: 481 IKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA 540

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEAL 219
           PF GE + E F++I +  + +P  +    S EA      ++ K+P +R+       ++  
Sbjct: 541 PFEGEDEDELFQSIMEHNVAYPKSM----SKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596

Query: 220 KHPW--------LMNKK 228
           +H +        L  K+
Sbjct: 597 EHAFFRYIDWEKLERKE 613

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 32/136 (23%)

Query: 121 IKVCDFEIS-RVILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           I + DF +    I          GTP+Y+           +      LG   Y +L G  
Sbjct: 178 IVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP 237

Query: 165 PFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM----TAKEALK 220
           PF     +E + NI    L     +    +  A+  +  +L K+  +R+       E   
Sbjct: 238 PFYSRNTAEMYDNILNKPLQLKPNI----TNSARHLLEGLLQKDRTKRLGAKDDFMEIKS 293

Query: 221 HPW--------LMNKK 228
           H +        L+NKK
Sbjct: 294 HVFFSLINWDDLINKK 309

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 70.6 bits (174), Expect = 8e-14
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 26/123 (21%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFSP 165
           IK+ DF  ++ + D      L GTPDY+           K     S G+  Y +L G++P
Sbjct: 145 IKITDFGFAKYVPDVT--YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 202

Query: 166 FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEALK 220
           F      +T+  I  A+L FP       + + KD +++++ ++  +R+       ++   
Sbjct: 203 FYDSNTMKTYEKILNAELRFPPFF----NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258

Query: 221 HPW 223
           HPW
Sbjct: 259 HPW 261

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 28/127 (22%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFSP 165
           I++ D  ++  + +G  I+  +GT  Y+                 +LG   Y ++ G SP
Sbjct: 325 IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP 384

Query: 166 FGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAK 216
           F          E  R + +   ++ +      SP+A+   +++L K+P ER+     +A+
Sbjct: 385 FQQRKKKIKREEVERLVKEVPEEYSERF----SPQARSLCSQLLCKDPAERLGCRGGSAR 440

Query: 217 EALKHPW 223
           E  +HP 
Sbjct: 441 EVKEHPL 447

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 34/150 (22%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----------GTPDYV------ 148
           L+P N +++GD       + D          +E                T  Y       
Sbjct: 160 LKPTN-ILLGD--EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFS 216

Query: 149 GK------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISP 195
            +            SLG   Y ++ G  P+       ++     + QL  P       S 
Sbjct: 217 VQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQ--SPRHSS 274

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWLM 225
                +  ++  +P +R      L     +
Sbjct: 275 ALWQLLNSMMTVDPHQRPHIPLLLSQLEAL 304

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 32/131 (24%)

Query: 121 IKVCDFEISRVILDGIEIRE--LLGTPDYV------------GK-----SLGVTAYVLLT 161
           + + DF +S+  +     R     GT +Y+             K     SLGV  Y LLT
Sbjct: 198 VVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 257

Query: 162 GFSPFGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM---- 213
           G SPF  +    + +E  R I K++  +P E+    S  AKD I ++L+K+P +R+    
Sbjct: 258 GASPFTVDGEKNSQAEISRRILKSEPPYPQEM----SALAKDLIQRLLMKDPKKRLGCGP 313

Query: 214 -TAKEALKHPW 223
             A E  +H +
Sbjct: 314 RDADEIKEHLF 324

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 23/141 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE-LLGTPDYV------GK------- 150
           ++P N V +       +K+ D  + R           L+GTP Y+               
Sbjct: 162 IKPAN-VFITA--TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSD 218

Query: 151 --SLGVTAYVLLTGFSPFGGETDS--ETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
             SLG   Y +    SPF G+  +     + I +   D+P    +  S E +  +   + 
Sbjct: 219 IWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC--DYPPLPSDHYSEELRQLVNMCIN 276

Query: 207 KNPMERMTAKEALKHPWLMNK 227
            +P +R            M+ 
Sbjct: 277 PDPEKRPDVTYVYDVAKRMHA 297

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 29/128 (22%)

Query: 121 IKVCDFEIS-RVILDGIEIRELLGTPDYV----------GKS-----LGVTAYVLLTGFS 164
           +++ D  ++  +     + +   GTP ++            S     LGVT Y ++    
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387

Query: 165 PFGGE----TDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TA 215
           PF        + E  + + +  + +PD+     SP +KDF   +L K+P +R+     + 
Sbjct: 388 PFRARGEKVENKELKQRVLEQAVTYPDKF----SPASKDFCEALLQKDPEKRLGFRDGSC 443

Query: 216 KEALKHPW 223
                HP 
Sbjct: 444 DGLRTHPL 451

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 115 DFPNCDIKVCDFEISRVILDGIEIRELLGTPDY----VGK----------SLGVTAYVLL 160
             P   +K+ D  ++  +      + ++GTP++    + +          + G+    + 
Sbjct: 165 TGPTGSVKIGDLGLAT-LKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMA 223

Query: 161 TGFSPFGGETD-SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEAL 219
           T   P+    + ++ +R ++      P    +   PE K+ I   + +N  ER + K+ L
Sbjct: 224 TSEYPYSECQNAAQIYRRVTSGVK--PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281

Query: 220 KHPWLMNK 227
            H +   +
Sbjct: 282 NHAFFQEE 289

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 29/127 (22%)

Query: 121 IKVCDFEISRVILDGIEIRELLGTPDYV-----------GK-----SLGVTAYVLLTGFS 164
           +++ D  ++       +    +GT  Y+                  SLG   + LL G S
Sbjct: 331 VRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389

Query: 165 PFGGETD---SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAK 216
           PF         E  R      ++ PD      SPE +  +  +L ++   R+      A+
Sbjct: 390 PFRQHKTKDKHEIDRMTLTMAVELPDSF----SPELRSLLEGLLQRDVNRRLGCLGRGAQ 445

Query: 217 EALKHPW 223
           E  + P+
Sbjct: 446 EVKESPF 452

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 22/133 (16%)

Query: 119 CDIKVCDFEISRVILDGIEIRELL------GTP-----------DYVGK----SLGVTAY 157
               +CDF  +  +      + LL      GT                K    S      
Sbjct: 188 SRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMML 247

Query: 158 VLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKE 217
            +L G  P+           I+        E+    +P     I + L K P+ R +A E
Sbjct: 248 HMLNGCHPWTQYFRGPLCLKIASEPPPIR-EIPPSCAPLTAQAIQEGLRKEPVHRASAME 306

Query: 218 ALKHPWLMNKKQI 230
             +      ++  
Sbjct: 307 LRRKVGKALQEVG 319

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           +L +T               + + +  I + +      + + +S E  + +  ++  +P 
Sbjct: 216 ALALTVVCAAGAEPLP---RNGDQWHEIRQGR---LPRIPQVLSQEFTELLKVMIHPDPE 269

Query: 211 ERMTAKEALKHPWLMNKKQ 229
            R +A   +KH  L++  +
Sbjct: 270 RRPSAMALVKHSVLLSASR 288

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 25/136 (18%)

Query: 115 DFPNCDIKVCDFEISRVILDGIEIRE-LLGTP-------------DYVGK----SLGVTA 156
           +  +  +K+ DF  S+ +       E   GT               Y       SLG T 
Sbjct: 156 NTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTI 215

Query: 157 YVLLTGFSPFGGETDSET---FRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
             + TG  PF  E        F+ +         E+ E +S EAK FI K    +P +R 
Sbjct: 216 IEMATGKPPFY-ELGEPQAAMFK-V--GMFKVHPEIPESMSAEAKAFILKCFEPDPDKRA 271

Query: 214 TAKEALKHPWLMNKKQ 229
            A + L   +L    +
Sbjct: 272 CANDLLVDEFLKVSSK 287

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 38/153 (24%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL-------------GTPDYV--- 148
           L+P N +      +  +KV DF +   +    E + +L             GT  Y+   
Sbjct: 144 LKPSN-IFFTM--DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPE 200

Query: 149 ---GK---------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFEDISP 195
              G          SLG+  + LL    PF  + +   T  ++   +  FP  LF    P
Sbjct: 201 QIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLK--FP-PLFTQKYP 254

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKK 228
                +  +L  +PMER  A   +++    +  
Sbjct: 255 CEYVMVQDMLSPSPMERPEAINIIENAVFEDLD 287

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 120 DIKVCDFEISRVILDGIEIRELLGTP---------------DYVGK----SLGVTAYVLL 160
            +K+CDF IS  ++D +      G                  Y  K    SLG+T   L 
Sbjct: 148 QVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA 207

Query: 161 TGFSPFGGETDSETFRNISKAQLDFPDELFEDI-SPEAKDFIAKILIKNPMERMTAKEAL 219
               P+  ++    F+ + +   +   +L  D  S E  DF ++ L KN  ER T  E +
Sbjct: 208 ILRFPY--DSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELM 265

Query: 220 KHPWLMNKKQIMTRV 234
           +HP+    +   T V
Sbjct: 266 QHPFFTLHESKGTDV 280

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 42/148 (28%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ D+ + +  +  G       GTP+Y+          G      +LGV  + ++ G S
Sbjct: 149 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 208

Query: 165 PFG---------GETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-- 213
           PF            T+   F+ I + Q+  P  L    S +A   +   L K+P ER+  
Sbjct: 209 PFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSL----SVKAASVLKSFLNKDPKERLGC 264

Query: 214 ----TAKEALKHPW-------LMNKKQI 230
                  +   HP+       +M +KQ+
Sbjct: 265 HPQTGFADIQGHPFFRNVDWDMMEQKQV 292

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 21/137 (15%)

Query: 120 DIKVCDFEISRVILDGIEIRELLGTP---------------DYVGK----SLGVTAYVLL 160
           +IK+CDF IS  ++D I      G                  Y  +    SLG+T Y L 
Sbjct: 164 NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELA 223

Query: 161 TGFSPFGG-ETDSETFRNISKAQL-DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEA 218
           TG  P+    +  +    + K       +    + SP   +F+   L K+  +R   KE 
Sbjct: 224 TGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKEL 283

Query: 219 LKHPWLMNKKQIMTRVG 235
           LKHP+++  ++    V 
Sbjct: 284 LKHPFILMYEERAVEVA 300

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 42/148 (28%)

Query: 121 IKVCDFEISRV-ILDGIEIRELLGTPDYV----------GK-----SLGVTAYVLLTGFS 164
           IK+ D+ + +  +  G       GTP+Y+          G      +LGV  + ++ G S
Sbjct: 192 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 251

Query: 165 PFG---------GETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-- 213
           PF            T+   F+ I + Q+  P  L    S +A   +   L K+P ER+  
Sbjct: 252 PFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSL----SVKAASVLKSFLNKDPKERLGC 307

Query: 214 ----TAKEALKHPW-------LMNKKQI 230
                  +   HP+       +M +KQ+
Sbjct: 308 HPQTGFADIQGHPFFRNVDWDMMEQKQV 335

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 120 DIKVCDFEISRVILDGIEIRELLGTPDY-----------VGK---------SLGVTAYVL 159
            IK+CDF IS  ++D        G   Y                       SLG++   L
Sbjct: 163 QIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVEL 222

Query: 160 LTGFSPFGGETDSETFRNISKAQLDFPDELFEDI--SPEAKDFIAKILIKNPMERMTAKE 217
            TG  P+  +     F  ++K   + P  L   +  S + + F+   L K+  +R    +
Sbjct: 223 ATGQFPY--KNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNK 280

Query: 218 ALKHPWLMNKKQIMTRV 234
            L+H ++   + +   V
Sbjct: 281 LLEHSFIKRYETLEVDV 297

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 28/139 (20%)

Query: 118 NCDIKVCDFEISRVILDGIEIRELL------GTP------------DYVGK----SLGVT 155
           +  +++ DF +S  +  G +I          GTP             Y  K    S G+T
Sbjct: 157 DGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGIT 216

Query: 156 AYVLLTGFSPFGGETDSETFRNISKA---QLDFPDELFEDI---SPEAKDFIAKILIKNP 209
           A  L TG +P+      +      +     L+   +  E +       +  I+  L K+P
Sbjct: 217 AIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDP 276

Query: 210 MERMTAKEALKHPWLMNKK 228
            +R TA E L+H +    K
Sbjct: 277 EKRPTAAELLRHKFFQKAK 295

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 38/151 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL-------------GTPDYV--- 148
           L+P N+    D     +KV DF +   +    E + +L             GT  Y+   
Sbjct: 190 LKPSNIFFTMD---DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPE 246

Query: 149 ---GK---------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-QLDFPDELFEDISP 195
              G          SLG+  + LL  FS     T  E  R I+    L FP  LF    P
Sbjct: 247 QIHGNNYSHKVDIFSLGLILFELLYSFS-----TQMERVRIITDVRNLKFP-LLFTQKYP 300

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWLMN 226
           +    +  +L  +P ER  A + +++    N
Sbjct: 301 QEHMMVQDMLSPSPTERPEATDIIENAIFEN 331

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 40/156 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-------------EIRELLGTPDY---- 147
           L+ +NL++        IK+CDF  +  I                 E      TP Y    
Sbjct: 164 LKVENLLLSN---QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPE 220

Query: 148 ---------VGK-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI 193
                    +G+     +LG   Y+L     PF    +      I   +   P    +  
Sbjct: 221 IIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF----EDGAKLRIVNGKYSIPP--HDTQ 274

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ 229
                  I  +L  NP ER++  E +     +   +
Sbjct: 275 YTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP-----------DYVGK----SLGVTAYVLLT 161
           + ++K+ DF ++  + D    R   +GTP            Y  K    SLG+TA  L  
Sbjct: 155 HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAR 214

Query: 162 GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH 221
           G  P       +    I K     P  L  + S   K+F+   L K P  R TAKE LKH
Sbjct: 215 GEPPHSELHPMKVLFLIPKNN---PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271

Query: 222 PWLMNKK 228
            +++   
Sbjct: 272 KFILRNA 278

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 52/170 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE------------LLGTPDYVGK-- 150
           ++P N+  M D  +  +++ D+ ++     G E               L+    Y     
Sbjct: 156 VKPHNV--MIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLD 213

Query: 151 --SLGVTAYVLLTGFSPF-----------------GGETDSETFRNI------------- 178
             SLG     ++    PF                 G E   +                  
Sbjct: 214 MWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG 273

Query: 179 --SKAQLD--FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
             S+ + +     E    +SPEA DF+ K+L  +   R+TA+EA++HP+ 
Sbjct: 274 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 50/164 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI------------EIRELLGTPDYVGK-- 150
           L+P NL +     +C++K+ DF ++R   D +            EI  +L    Y     
Sbjct: 158 LKPSNLAVNE---DCELKILDFGLARHTADEMTGYVATRWYRAPEI--MLNWMHYNQTVD 212

Query: 151 --SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS-------------K 180
             S+G     LLTG + F G                  +E  + IS              
Sbjct: 213 IWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272

Query: 181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            +++F   +F   +P A D + K+L+ +  +R+TA +AL H + 
Sbjct: 273 PKMNF-ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF 315

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 50/167 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE----------------LLGTPDYV 148
           L+P NL +  +  +  +K+ DF ++R++      +                 LL   +Y 
Sbjct: 146 LKPANLFI--NTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYT 203

Query: 149 GK----SLGVTAYVLLTGFSPFGGET---------------DSETFRNI-SKAQ------ 182
                 + G     +LTG + F G                   E  + + S         
Sbjct: 204 KAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRND 263

Query: 183 -----LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                     +L   IS EA DF+ +IL  +PM+R+TA+EAL HP++
Sbjct: 264 MTEPHKPL-TQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYM 309

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 53/190 (27%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           ++P+N+++     +  IK+CDF  +R++                       L+G   Y G
Sbjct: 128 VKPENILITK---HSVIKLCDFGFARLL--TGPSDYYDDEVATRWYRSPELLVGDTQY-G 181

Query: 150 K-----SLGVTAYVLLTGFSPFGGETDSETFRNISKA-------------------QLDF 185
                 ++G     LL+G   + G++D +    I K                     +  
Sbjct: 182 PPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKI 241

Query: 186 PD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCS 237
           PD          F +IS  A   +   L  +P ER+T ++ L HP+  N ++I       
Sbjct: 242 PDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREIEDLAKEH 301

Query: 238 SCPSIIQNQQ 247
             P+     Q
Sbjct: 302 DKPAENLYFQ 311

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 107 PQNLVMMGDFPNCDIKVCDFEISRVILDG--IEIRELLGTPDYV------GK-------- 150
           PQN +++    N  +K+ DF I++ + +    +   +LGT  Y       G+        
Sbjct: 139 PQN-ILIDS--NKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDI 195

Query: 151 -SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
            S+G+  Y +L G  PF GET  S   ++I  +  +   ++ +DI     + I +   K+
Sbjct: 196 YSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKD 255

Query: 209 PMER-MTAKE 217
              R  T +E
Sbjct: 256 KANRYKTIQE 265

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 50/164 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI------------EIRELLGTPDYVGK-- 150
           L+P NL +     +C++K+ DF ++R     +            E+  +L    Y     
Sbjct: 154 LKPGNLAVNE---DCELKILDFGLARQADSEMTGYVVTRWYRAPEV--ILNWMRYTQTVD 208

Query: 151 --SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS-------------K 180
             S+G     ++TG + F G                  +E  + +               
Sbjct: 209 IWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 268

Query: 181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            + DF   +  + SP A + + K+L+ +  +R+TA EAL HP+ 
Sbjct: 269 EKKDF-ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYF 311

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 50/164 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI------------EIRELLGTPDYVGK-- 150
           L+P NL +     +C++K+ DF ++R     +            E+  +L    Y     
Sbjct: 152 LKPGNLAVNE---DCELKILDFGLARHADAEMTGYVVTRWYRAPEV--ILSWMHYNQTVD 206

Query: 151 --SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS-------------K 180
             S+G     +LTG + F G+                 +E  + ++              
Sbjct: 207 IWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT 266

Query: 181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            + DF  +LF   SP+A D + K+L  +  +R+TA +AL HP+ 
Sbjct: 267 PRKDF-TQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFF 309

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 52/167 (31%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--------------EIRELLGTPDYVGK 150
           ++P N+++  +  +  +K+CDF  ++ +                  E+  + G   Y   
Sbjct: 157 IKPHNVLV--NEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPEL--IFGNQHYTTA 212

Query: 151 ----SLG-VTAYVLLTGFSPFGGET---------------DSETFRNIS--KAQLDFPD- 187
               S+G + A  ++ G   F G+                  E  R ++     +D  + 
Sbjct: 213 VDIWSVGCIFAE-MMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNS 271

Query: 188 ----------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                     +     + EA D ++ +L   P ERM   EAL HP+ 
Sbjct: 272 KGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYF 318

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 36/128 (28%)

Query: 107 PQNLVMMGDFPNCDIKVCDFEISRVILD-GIEIRELLGTPDYV------GK--------S 151
           P+N+++  +     +K+ D      I   G     L GTP +                 +
Sbjct: 210 PENIMLTEE----QLKLIDLGAVSRINSFGY----LYGTPGFQAPEIVRTGPTVATDIYT 261

Query: 152 LGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE-DISPEAKDFIAKILIKNPM 210
           +G T   L        G                 P++             + + +  +P 
Sbjct: 262 VGRTLAALTLDLPTRNGRYVDG-----------LPEDDPVLKTYDSYGRLLRRAIDPDPR 310

Query: 211 ER-MTAKE 217
           +R  TA+E
Sbjct: 311 QRFTTAEE 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 9e-09
 Identities = 49/355 (13%), Positives = 99/355 (27%), Gaps = 113/355 (31%)

Query: 99  DFIFFFLQPQNLVMMGDFPNCDIK-VCDFEISRVILDGIEIRELLGTPDYVGKSLGVTAY 157
           D +  F        + +F   D K V D    + IL   EI  ++ + D V  +      
Sbjct: 20  DILSVFEDA----FVDNF---DCKDVQDMP--KSILSKEEIDHIIMSKDAVSGT-----L 65

Query: 158 VLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD-------FIAK------- 203
            L         E   +    + +    F   L   I  E +        +I +       
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 204 --ILIKNPMER----MTAKEALK----HPWL----MNK--KQIMT--------------- 232
             +  K  + R    +  ++AL        +    +    K  +                
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 233 -----RVGCSSCP-SIIQNQQNKKNLRKYLSKSREALFEKVISAS-KLQQENLRKSALLK 285
                 +   + P ++++  Q    L   +  +  +  +   +   ++         LLK
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 286 YNKTRR-L------------------CESQMSLVSKTREKSLGDMAISLGRSKEKL---- 322
                  L                  C  ++ L++ TR K + D   +   +   L    
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC--KI-LLT-TRFKQVTDFLSAATTTHISLDHHS 295

Query: 323 YGF----------KCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWPSHW 367
                        K L    +  +L + +   N   +  I ++I D   TW  +W
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATW-DNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 48/338 (14%), Positives = 92/338 (27%), Gaps = 91/338 (26%)

Query: 15  ARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLLGL 74
           A   C     +      + W    ++       E  L  L K+      Y +DP      
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRS 217

Query: 75  NPRPPVYQASATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC-----DIKVCDFEIS 129
           +    +     + +A                + + L+    + NC     +  V + +  
Sbjct: 218 DHSSNIKLRIHSIQA----------------ELRRLLKSKPYENCLLVLLN--VQNAKAW 259

Query: 130 RVILDGIEIRELLGTPDY-VGKSLGVTAYVLLTGFSPFGGETDSET------FRNISKAQ 182
               + +  + LL T    V   L       ++        T  E       + +     
Sbjct: 260 NA-FN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 183 LDFPDELFEDISPEAKDFIAKILIKNPME----RMTAKEALKH----------PWLMNKK 228
           L  P E+    +P     IA+ +          +    + L            P    K 
Sbjct: 318 L--PREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 229 -----------QIMTRVGC-------SSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS- 269
                       I T +          S   ++ N+ +K +L   + K  +   E  IS 
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPK---ESTISI 428

Query: 270 -----ASKLQQEN---LRKSALLKYNKTRRLCESQMSL 299
                  K++ EN   L +S +  YN  +      +  
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 35/139 (25%)

Query: 107 PQNLVMMGDFPNCDIKVCDFEISRVILDGI----EIRELLGTPDYV------GK------ 150
           P N +M+       +KV DF I+R I D      +   ++GT  Y+      G       
Sbjct: 144 PAN-IMIS--ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARS 200

Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNISKA------QLDFPDELFEDISPEAKDFI 201
              SLG   Y +LTG  PF G++       +S A          P    E +S +    +
Sbjct: 201 DVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVREDPIPPSARHEGLSADLDAVV 254

Query: 202 AKILIKNPMER-MTAKEAL 219
            K L KNP  R  TA E  
Sbjct: 255 LKALAKNPENRYQTAAEMR 273

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 23/130 (17%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP-----------DYVGK----SLGVTAYVLLT 161
               K+ DF ++  + D +  R  ++GTP            Y       SLG+TA  +  
Sbjct: 161 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAE 220

Query: 162 GFSPFGGETDSETFRNISKA---QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEA 218
           G  P+           I          P+      S    DF+ + L+K+P +R TA + 
Sbjct: 221 GKPPYADIHPMRAIFMIPTNPPPTFRKPELW----SDNFTDFVKQCLVKSPEQRATATQL 276

Query: 219 LKHPWLMNKK 228
           L+HP++ + K
Sbjct: 277 LQHPFVRSAK 286

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 53/166 (31%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           ++P+N+++     +  +K+CDF  +R +                       L+G   Y G
Sbjct: 150 IKPENILVSQ---SGVVKLCDFGFARTL--AAPGEVYDDEVATRWYRAPELLVGDVKY-G 203

Query: 150 K-----SLGVTAYVLLTGFSPFGGETDSETFRNISKA-------------------QLDF 185
           K     ++G     +  G   F G++D +   +I                       +  
Sbjct: 204 KAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRL 263

Query: 186 PD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           P+          +  +S    D   K L  +P +R    E L H +
Sbjct: 264 PEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDF 309

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP----------------DYVGK----SLGVTA 156
             DI++ DF +S   L  ++ R+  +GTP                 Y  K    SLG+T 
Sbjct: 153 EGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITL 212

Query: 157 YVLLTGFSPFGGETDSETFRNISKA---QLDFPDELFEDISPEAKDFIAKILIKNPMERM 213
             +     P            I+K+    L  P +     S E +DF+   L KNP  R 
Sbjct: 213 IEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKW----SVEFRDFLKIALDKNPETRP 268

Query: 214 TAKEALKHPWLMNKK 228
           +A + L+HP++ +  
Sbjct: 269 SAAQLLEHPFVSSIT 283

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 23/130 (17%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP-----------DYVGK----SLGVTAYVLLT 161
           +  +K+ DF     I   +  R+ L+GTP            Y  +    SLG+    ++ 
Sbjct: 177 DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD 236

Query: 162 GFSPFGGETDSETFRNISKA---QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEA 218
           G  P+  ++  +  + +  +   +L    ++    SP  +DF+ ++L+++P ER TA+E 
Sbjct: 237 GEPPYFSDSPVQAMKRLRDSPPPKLKNSHKV----SPVLRDFLERMLVRDPQERATAQEL 292

Query: 219 LKHPWLMNKK 228
           L HP+L+   
Sbjct: 293 LDHPFLLQTG 302

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 49/163 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++       ++K+ DF ++R    GI +R+               L+G+  Y  
Sbjct: 126 LKPQNLLIN---REGELKIADFGLARAF--GIPVRKYTHEIVTLWYRAPDVLMGSKKYST 180

Query: 150 K----SLGVTAYVLLTGFSPFGGETDSETFRNISKA------------------QLDFP- 186
                S+G     ++ G   F G ++++    I +                     +F  
Sbjct: 181 TIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTV 240

Query: 187 ------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                 +   + +     D ++K+L  +P +R+TAK+AL+H +
Sbjct: 241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAY 283

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 56/170 (32%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV-----------GKSLG 153
           L+P NL++      CD+K+CDF ++RV     +    L   +YV             S G
Sbjct: 154 LKPSNLLLNT---TCDLKICDFGLARVADPDHDHTGFL--TEYVATRWYRAPEIMLNSKG 208

Query: 154 VTAYV-----------LLTGFSPFGGET---------------DSETFRNIS-------- 179
            T  +           +L+    F G+                  E    I         
Sbjct: 209 YTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL 268

Query: 180 -----KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                K ++ + + LF +   +A D + K+L  NP +R+  ++AL HP+L
Sbjct: 269 LSLPHKNKVPW-NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYL 317

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 22/129 (17%)

Query: 107 PQNLVMMGDFPNCDIKVCDFEISRVILD-GI-EIRELLGTPDYV------GK-------- 150
           P+N +++    +    + DF I+    D  + ++   +GT  Y+                
Sbjct: 162 PEN-ILVS--ADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADI 218

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +L    Y  LTG  P+ G+  S    +I+   +  P  +   I       IA+ + KNP
Sbjct: 219 YALTCVLYECLTGSPPYQGDQLSVMGAHIN-QAIPRPSTVRPGIPVAFDAVIARGMAKNP 277

Query: 210 MER-MTAKE 217
            +R +T  +
Sbjct: 278 EDRYVTCGD 286

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 49/165 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE------------LLGTPDYVGK-- 150
           L P N+++     N DI +CDF ++R                      ++    +     
Sbjct: 160 LHPGNILLAD---NNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVD 216

Query: 151 --SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS-------------- 179
             S G     +    + F G T                 E     S              
Sbjct: 217 MWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSN 276

Query: 180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                +   +     P A D IAK+L  NP  R++ ++AL+HP+ 
Sbjct: 277 VPARAW-TAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYF 320

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 56/173 (32%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI---------R--ELLGTPDYVGK--- 150
           L+P N+V+  D   C +K+ DF ++R       +         R  E++    Y      
Sbjct: 153 LKPSNIVVKSD---CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 209

Query: 151 -SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS--------------- 179
            S+G     ++ G   F G                   E  + +                
Sbjct: 210 WSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAG 269

Query: 180 --------KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                           E  +  + +A+D ++K+L+ +  +R++  EAL+HP++
Sbjct: 270 YSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYI 322

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP-----------DYVGK----SLGVTAYVLLT 161
           +  +K+ DF     I      R  ++GTP            Y  K    SLG+ A  ++ 
Sbjct: 152 DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE 211

Query: 162 GFSPFGGETDSETFRNISKA---QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEA 218
           G  P+  E        I+     +L  P++L    S   +DF+ + L  +  +R +AKE 
Sbjct: 212 GEPPYLNENPLRALYLIATNGTPELQNPEKL----SAIFRDFLNRCLEMDVEKRGSAKEL 267

Query: 219 LKHPWLMNKK 228
           L+H +L   K
Sbjct: 268 LQHQFLKIAK 277

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 23/132 (17%)

Query: 118 NCDIKVCDFEISRVILDGIEIRE-LLGTP----------------DYVGK----SLGVTA 156
           N ++K+ DF +S  +   +  R   +GTP                 Y  K    SLG+TA
Sbjct: 165 NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITA 224

Query: 157 YVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAK 216
             +  G  P            I +     P    +  S + + FI   L+KN  +R   +
Sbjct: 225 IEMAEGAPPLCDMHPMRALFLIPRN--PAPRLKSKKWSKKFQSFIESCLVKNHSQRPATE 282

Query: 217 EALKHPWLMNKK 228
           + +KHP++ ++ 
Sbjct: 283 QLMKHPFIRDQP 294

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 49/166 (29%)

Query: 105 LQPQNLVMMGDFPNCD--IKVCDFEISRVILDGIEIRE---------------LLGTPDY 147
           L+PQNL++     +    +K+ DF ++R    GI IR+               LLG+  Y
Sbjct: 158 LKPQNLLLSVSDASETPVLKIGDFGLARAF--GIPIRQFTHEIITLWYRPPEILLGSRHY 215

Query: 148 VGK----SLGVTAYVLLTGFSPFGGETDSETFRNISKA------------------QLDF 185
                  S+      +L     F G+++ +    I +                   +  F
Sbjct: 216 STSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSF 275

Query: 186 P--------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           P          L   +  E  D +  +L  +P++R++AK AL+HP+
Sbjct: 276 PKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPY 321

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 56/173 (32%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI---------R--ELLGTPDYVGK--- 150
           L+P N+V+  D   C +K+ DF ++R       +         R  E++    Y      
Sbjct: 190 LKPSNIVVKSD---CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 246

Query: 151 -SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS--------------- 179
            S+G     ++     F G                   E  + +                
Sbjct: 247 WSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 306

Query: 180 --------KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                    +      E  +  + +A+D ++K+L+ +P +R++  +AL+HP++
Sbjct: 307 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYI 359

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 49/164 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--------------EIRELLGTPDYVGK 150
           ++PQNL++  +  +  +K+CDF  ++ ++                 E+  +LG  +Y   
Sbjct: 167 IKPQNLLV--NSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPEL--MLGATEYTPS 222

Query: 151 ----SLG-VTAYVLLTGFSPFGGET---------------DSETFRNIS--KAQLDFP-- 186
               S+G V    L+ G   F GET                 E    ++    ++ FP  
Sbjct: 223 IDLWSIGCVFGE-LILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTL 281

Query: 187 -----DELFEDISP-EAKDFIAKILIKNPMERMTAKEALKHPWL 224
                 ++  + +P  A D + +IL   P  R+   EA+ HP+ 
Sbjct: 282 KAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFF 325

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 54/166 (32%)

Query: 105 LQPQNLVMMGDFPNCD--IKVCDFEISRVILDGIEIRE---------------LLGTPDY 147
           L+PQNL++     N D  +K+ DF ++R    GI +R                L+G+  Y
Sbjct: 145 LKPQNLLI-----NSDGALKLADFGLARAF--GIPVRSYTHEVVTLWYRAPDVLMGSKKY 197

Query: 148 VGK----SLGVTAYVLLTGFSPFGGETDSETFRNISKA-------------------QLD 184
                  S+G     ++TG   F G TD +    I                      Q  
Sbjct: 198 STSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRT 257

Query: 185 FPD-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           F          +      E  D ++ +L  +P +R++A++A+ HP+
Sbjct: 258 FQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPY 303

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 66/187 (35%)

Query: 105 LQPQN-LVMMGDFPNCD--IKVCDF----EISRVILDGIEIRE------LLGTPDYVGK- 150
           ++P+N L+ + D P     IK+ D            + I+ RE      LLG P +    
Sbjct: 158 IKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAP-WGCGA 216

Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL--------DFPDELF--------- 190
              S     + L+TG   F  +      ++     +        + P  L          
Sbjct: 217 DIWSTACLIFELITGDFLFEPDEGHSYTKD--DDHIAQIIELLGELPSYLLRNGKYTRTF 274

Query: 191 ------------------EDISPEA-----------KDFIAKILIKNPMERMTAKEALKH 221
                             ED+  E             DF++ +L  +P +R  A   + H
Sbjct: 275 FNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH 334

Query: 222 PWLMNKK 228
           PWL +  
Sbjct: 335 PWLKDTL 341

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 47/163 (28%)

Query: 105 LQPQNLVMMGDFPNCDI-KVCDFEISRVILDGIEIRE------------LLGTPDYVGK- 150
           ++PQNL++    P+  + K+CDF  ++ ++ G                 + G  DY    
Sbjct: 182 IKPQNLLL---DPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSI 238

Query: 151 ---SLG-VTAYVLLTGFSPFGGET---------------DSETFRNIS--KAQLDFP--- 186
              S G V A  LL G   F G++                 E  R ++    +  FP   
Sbjct: 239 DVWSAGCVLAE-LLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIK 297

Query: 187 -----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                        PEA    +++L   P  R+T  EA  H + 
Sbjct: 298 AHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 340

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 33/170 (19%), Positives = 51/170 (30%), Gaps = 56/170 (32%)

Query: 120 DIKVCDFEISRVILDGIEIRELLGTPDY------VGK---------SLGVTAYVLLTGFS 164
           +IK+CDF +S  ++D +     +GT  Y       G          S+G++   +  G  
Sbjct: 170 EIKLCDFGVSGQLIDSMA-NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 228

Query: 165 PFGGETDSETFRNISKAQLDFPD---------------------------ELFEDI---- 193
           P       E                                         EL + I    
Sbjct: 229 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEP 288

Query: 194 ---------SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV 234
                    S E +DF+ K LIKNP ER   K+ + H ++          
Sbjct: 289 PPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDF 338

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 50/164 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++       ++K+ DF ++R     I  +                LLG+ DY  
Sbjct: 126 LKPQNLLIN---ERGELKLADFGLARAK--SIPTKTYDNEVVTLWYRPPDILLGSTDYST 180

Query: 150 K----SLGVTAYVLLTGFSPFGGETDSETFRNISKA-------------------QLDFP 186
           +     +G   Y + TG   F G T  E    I +                      ++P
Sbjct: 181 QIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYP 240

Query: 187 D-------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                        +  +  D + K+L      R++A++A+KHP+
Sbjct: 241 KYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPF 284

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 50/164 (30%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++     N ++K+ +F ++R    GI +R                L G   Y  
Sbjct: 127 LKPQNLLIN---RNGELKLANFGLARAF--GIPVRCYSAEVVTLWYRPPDVLFGAKLYST 181

Query: 150 K----SLGVTAYVLLTGFSP-FGGETDSETFRNISKA-------------QL----DFPD 187
                S G     L     P F G    +  + I +              +L     +P 
Sbjct: 182 SIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPM 241

Query: 188 --------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                    +   ++   +D +  +L  NP++R++A+EAL+HP+
Sbjct: 242 YPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPY 285

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 45/162 (27%)

Query: 105 LQPQNLVMMGDFPNCD-IKVCDFEISRVILDGIEIRE------------LLGTPDYVGK- 150
           ++PQNL++    P    +K+ DF  +++++ G                 + G  +Y    
Sbjct: 167 IKPQNLLLD---PPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNI 223

Query: 151 ---SLGVTAYVLLTGFSPFGGET---------------DSETFRNIS--KAQLDFP---- 186
              S G     L+ G   F GE+                 E  + ++    +  FP    
Sbjct: 224 DIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRP 283

Query: 187 ---DELFE-DISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
               ++F     P+A D I+++L   P  R+TA EAL HP+ 
Sbjct: 284 HPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFF 325

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            E F   S +A   + ++L+ NP +R+T  E L HP+ 
Sbjct: 363 AERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFF 400

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            + +  IS +  + +  +L  NP +R+T  +AL HP+L
Sbjct: 328 KQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 15/38 (39%), Positives = 30/38 (78%)

Query: 187 DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
           +++F  ++P+  D + ++L+ +P +R+TAKEAL+HP+L
Sbjct: 272 EKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYL 309

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE-DISPEAKDFIAKILIKNP 209
           SLG+T   L     P           +I++ +      L     S   ++F+   L K P
Sbjct: 238 SLGITCIELAERKPPLFNMNAMSALYHIAQNE---SPALQSGHWSEYFRNFVDSCLQKIP 294

Query: 210 MERMTAKEALKHPWLMNKK 228
            +R T++  LKH +++ ++
Sbjct: 295 QDRPTSEVLLKHRFVLRER 313

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 138 IRELLGTP--DYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL-FEDIS 194
           I  ++  P  + V       A  ++           S      +K +          D +
Sbjct: 243 IIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCN 302

Query: 195 PEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            EA D + K+L  NP +R++A +ALKHP++
Sbjct: 303 EEALDLLDKLLQFNPNKRISANDALKHPFV 332

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 37/168 (22%), Positives = 56/168 (33%), Gaps = 54/168 (32%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE---------------LLGTPDYVG 149
           L+PQNL++        +K+ DF ++R    GI +                 L+G+  Y  
Sbjct: 134 LKPQNLLIN---KRGQLKLGDFGLARAF--GIPVNTFSSEVVTLWYRAPDVLMGSRTYST 188

Query: 150 K----SLGVTAYVLLTGFSPFGGETDSE----------------------------TFRN 177
                S G     ++TG   F G  D E                              + 
Sbjct: 189 SIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQ 248

Query: 178 ISKAQLD--FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                L         E +     DF+  +L  NP  R++AK+AL HPW
Sbjct: 249 RPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPW 296

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
            +  ++       + ++L  NP +R++A  AL+H +
Sbjct: 264 SVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSY 299

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 198 KDFIAKILIKNPMERMTAKEALKHPWL 224
            DF+ + L  +P  RMT  +AL+HPWL
Sbjct: 386 LDFLKQCLEWDPAVRMTPGQALRHPWL 412

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           +   DI    KD + K L  NP +R++A  AL HP+
Sbjct: 264 KFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 129 SRVIL--DGIEIRELLGTPDYVG--------KSLGVTAYVLLTGFSPFGGETDSETFRNI 178
           SRV +  DG     +L  P  +         + +G + Y LL    P             
Sbjct: 158 SRVRVSIDG---DVVLAYPATMPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA 214

Query: 179 SK---AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTA 215
            +    Q   P ++  DI  +     A+ +  +   R  +
Sbjct: 215 ERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSAS 254

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 198 KDFIAKILIKNPMERMTAKEALKHPWL 224
           KD I ++L  +P  R+    AL+H + 
Sbjct: 350 KDLILRMLDYDPKTRIQPYYALQHSFF 376

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 171 DSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
           D  TF++     L     +F     +  D I  + + NP  R+TA +ALK  +
Sbjct: 245 DYVTFKSFPGIPLH---HIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY 294

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 59/180 (32%)

Query: 118 NCDIKVCDF--------EISRVILDG----IEIRELLGTPDYVGK----SLGVTAYVLLT 161
           N  I+V DF          + ++        E+  +L    +       S+G   +    
Sbjct: 178 NTSIRVADFGSATFDHEHHTTIVATRHYRPPEV--ILELG-WAQPCDVWSIGCILFEYYR 234

Query: 162 GFSPFGGETDSETFRNISKAQLDFPDEL----------------FEDISPEAK------- 198
           GF+ F    + E    + K     P  +                +++ S + +       
Sbjct: 235 GFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCK 294

Query: 199 -----------------DFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPS 241
                            D + ++L  +P +R+T  EAL HP+             S  PS
Sbjct: 295 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEERSFHTSRNPS 354

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 199 DFIAKILIKNPMERMTAKEALKHPWLMNKKQ 229
           D I K+L  +P +R+T +EALKHP+    K+
Sbjct: 307 DLIQKMLEYDPAKRITLREALKHPFFDLLKK 337

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 29/118 (24%), Positives = 38/118 (32%), Gaps = 44/118 (37%)

Query: 151 SLGVTAYVLLTG---FSPFGGETDSET-----------------FRNISKAQLDFPDE-- 188
           S    A+ L TG   F P  GE  +                        K   +F  +  
Sbjct: 278 STACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKG 337

Query: 189 ------------LFE------DISPEAK----DFIAKILIKNPMERMTAKEALKHPWL 224
                       LFE      + S E      DF+  +L   P +R TA E L+HPWL
Sbjct: 338 DLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWL 395

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 34/145 (23%)

Query: 105 LQPQNLVMMGDFPNCD--------IKVCDFEIS---RVILDGIEIRELLGTPDYV----- 148
           ++P N ++   F   D        + + D   S   ++   G        T  +      
Sbjct: 198 IKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML 257

Query: 149 -GK---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
             K          +  T Y +L G          E           F      D+     
Sbjct: 258 SNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGL-----FRRLPHLDMW---N 309

Query: 199 DFIAKILIKNPMERMTAKEALKHPW 223
           +F   +L       + + + L+   
Sbjct: 310 EFFHVMLNIPDCHHLPSLDLLRQKL 334

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 198 KDFIAKILIKNPMERMTAKEALKHPWL 224
            DF+  IL  +P  R +  E LKH +L
Sbjct: 333 CDFLYSILQIDPTLRPSPAELLKHKFL 359

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 6/136 (4%)

Query: 142 LGTPDYVGKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
           L     +       +       S       + T R  +      P       SP    F+
Sbjct: 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYH--RTFSPHFHHFV 314

Query: 202 AKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSRE 261
            + L +NP  R +A   L H +    K    R    + P +++      N     S+   
Sbjct: 315 EQCLQRNPDARPSASTLLNHSFFKQIK----RRASEALPELLRPVTPITNFEGSQSQDHS 370

Query: 262 ALFEKVISASKLQQEN 277
            +F  V +  +L+ ++
Sbjct: 371 GIFGLVTNLEELEVDD 386

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 138 IRELLGTPDYVGKSL--GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP 195
           I  ++G P          +     +   S    +    T+ N S  +  + ++       
Sbjct: 257 IFNVMGFPA---DKDWEDIKK---MPEHSTLMKDFRRNTYTNCSLIK--YMEKHKVKPDS 308

Query: 196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNK 227
           +A   + K+L  +P++R+T+++A++ P+ +  
Sbjct: 309 KAFHLLQKLLTMDPIKRITSEQAMQDPYFLED 340

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 194 SPEAKDFIAKILIKNPMERMTAKEALKHPW 223
            P A D I K+L+ +P +R+ + +AL H +
Sbjct: 285 DPYALDLIDKLLVLDPAQRIDSDDALNHDF 314

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 48 EEQLLKLIKVEPIEKYYSLDPEPLLGLN 75
          E+Q LK  K++   K Y+ D  P L + 
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.98
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.98
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.98
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.98
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.98
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.79
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.7
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.44
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.7
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.65
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.37
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.92
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.76
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.73
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.68
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.56
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.08
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.99
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.73
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.26
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	96.2
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.04
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.65
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.54
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	94.96
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	94.37
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	94.04
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.02
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	93.77
1c07_A	95	Protein (epidermal growth factor receptor pathway	93.03
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	92.82
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	92.74
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	92.59
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	92.39
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	92.08
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	92.08
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	91.79
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	91.57
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	91.53
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	91.28
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	90.96
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	90.9
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	90.76
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	90.36
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	89.99
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	89.99
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	89.69
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	89.49
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	89.46
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	89.39
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	89.28
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	89.25
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	89.16
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	89.15
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	89.11
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	88.65
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	88.16
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	88.05
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	87.75
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	87.66
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	87.56
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	87.53
3li6_A	66	Calcium-binding protein; calcium signaling protein	87.25
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	87.16
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	87.03
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	86.93
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	86.89
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	86.59
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	86.41
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	85.9
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	85.68
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	85.66
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	85.45
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	85.43
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	85.39
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	85.33
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	85.29
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	85.13
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	84.9
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	84.39
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	84.35
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	84.03
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	83.95
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	83.88
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	83.65
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	83.46
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	83.25
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	83.16
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	83.03
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	82.58
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	82.32
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	82.29
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	81.95
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	81.88
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	81.84
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	81.8
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	81.72
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	81.59
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	81.53
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	81.49
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	80.96
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	80.91
3fwb_A	161	Cell division control protein 31; gene gating, com	80.53
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	80.49
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	80.4
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	80.22

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.5e-52  Score=388.81  Aligned_cols=212  Identities=23%  Similarity=0.359  Sum_probs=188.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..++||+|+||+||+|+++.||+.||+ |++..      ...+.+.+|+++|+.|+|||||++++++++   +|++||| 
T Consensus        36 i~~~lG~G~fg~V~~a~~~~~~~~~Ai-K~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~  114 (311)
T 4aw0_A           36 FGKILGEGSFSTVVLARELATSREYAI-KILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYA  114 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEE-EEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            345899999999999999999999994 55432      334679999999999999999999999876   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.+...
T Consensus       115 ~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~------~~IiHRDlKPeNILl~~~---g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          115 KNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHG------KGIIHRDLKPENILLNED---MHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             TTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---SCEEECCCTTCEECCTT
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCCccCCCCHHHeEEcCC---CCEEEEEcCCceecCCC
Confidence             8899887                    67888888      999999999999999875   89999999999987533


Q ss_pred             ---ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         136 ---IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       136 ---~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                         ....+.|||+.||||               |+||++|+|++|++||.+.+..+++.+|.++.+.+|.    .+|+++
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~----~~s~~~  261 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPE----KFFPKA  261 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT----TCCHHH
T ss_pred             CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc----ccCHHH
Confidence               245678999999999               9999999999999999999999999999999888775    589999


Q ss_pred             HHHHHHhcccCCCCCCCHHH------HhcCccccCCccccc
Q psy6046         198 KDFIAKILIKNPMERMTAKE------ALKHPWLMNKKQIMT  232 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e------~l~hp~~~~~~~~~~  232 (379)
                      ++||.+||..||++|||++|      +++||||++.+|...
T Consensus       262 ~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~l  302 (311)
T 4aw0_A          262 RDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL  302 (311)
T ss_dssp             HHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTG
T ss_pred             HHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHHh
Confidence            99999999999999999987      589999999887654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.4e-51  Score=379.30  Aligned_cols=207  Identities=26%  Similarity=0.391  Sum_probs=170.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||+||+|+++.+|+.||+ |.+..      .....+.+|+.+|+.|+|||||++++++.+   +|++||| 
T Consensus        17 i~~~lG~G~fg~V~~~~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   95 (275)
T 3hyh_A           17 IVKTLGEGSFGKVKLAYHTTTGQKVAL-KIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA   95 (275)
T ss_dssp             EEEEEEC---CCEEEEECTTTCCEEEE-EEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEE-EEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            345899999999999999999999985 44432      224568999999999999999999999765   8999999 


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......
T Consensus        96 ~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~------~~IiHRDiKP~NILl~~~---~~vkl~DFGla~~~~~~~  166 (275)
T 3hyh_A           96 GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHR------HKIVHRDLKPENLLLDEH---LNVKIADFGLSNIMTDGN  166 (275)
T ss_dssp             CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCTTTEEECTT---CCEEECCSSCC-------
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccccCChHHeEECCC---CCEEEeecCCCeecCCCC
Confidence            8888887                    67888888      999999999999999875   899999999998877666


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...+.+||+.||||                |+||++|+|+||++||.+.+..+++..+..+.+.+|.    .+|+++++|
T Consensus       167 ~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~l  242 (275)
T 3hyh_A          167 FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK----FLSPGAAGL  242 (275)
T ss_dssp             --------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT----TSCHHHHHH
T ss_pred             ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHH
Confidence            67788999999999                9999999999999999999999999999999887764    589999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      |.+||+.||++|||++|+++||||+..
T Consensus       243 i~~~L~~dP~~R~s~~eil~hpw~k~~  269 (275)
T 3hyh_A          243 IKRMLIVNPLNRISIHEIMQDDWFKVD  269 (275)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHCHHHHTT
T ss_pred             HHHHccCChhHCcCHHHHHcCcccccC
Confidence            999999999999999999999999743

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9.9e-51  Score=384.43  Aligned_cols=209  Identities=18%  Similarity=0.280  Sum_probs=182.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEec--ccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKER--NVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      .||+|+||+||+|+++.||+.||++++.  .....+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|+|++
T Consensus        81 ~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~  160 (346)
T 4fih_A           81 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTD  160 (346)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHH
T ss_pred             EeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHH
Confidence            6999999999999999999999954432  22345678999999999999999999998765   8999999  888887


Q ss_pred             H-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccccccc
Q psy6046          83 A-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRELL  142 (379)
Q Consensus        83 ~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~~~~~  142 (379)
                      .                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.+... ....+.+
T Consensus       161 ~l~~~~l~e~~~~~~~~qi~~aL~ylH~------~~IiHRDlKp~NILl~~~---g~vKl~DFGla~~~~~~~~~~~~~~  231 (346)
T 4fih_A          161 IVTHTRMNEEQIAAVCLAVLQALSVLHA------QGVIHRDIKSDSILLTHD---GRVKLSDFGFCAQVSKEVPRRKSLV  231 (346)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECCSSSCCBCCCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccccCCHHHEEECCC---CCEEEecCcCceecCCCCCcccccc
Confidence            7                   67888888      999999999999999986   89999999999987544 3466789


Q ss_pred             cCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      ||+.||||               |+||++|+|++|++||.+.+..+.+..|...... ....+..+|+++++||.+||..
T Consensus       232 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~~dli~~~L~~  310 (346)
T 4fih_A          232 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP-RLKNLHKVSPSLKGFLDRLLVR  310 (346)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCC-CCSCGGGSCHHHHHHHHHHSCS
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCC-CCCccccCCHHHHHHHHHHcCC
Confidence            99999999               9999999999999999999999999988876432 2234567999999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||++|||++|+|+||||++..
T Consensus       311 dP~~R~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          311 DPAQRATAAELLKHPFLAKAG  331 (346)
T ss_dssp             STTTSCCHHHHTTCGGGGGCC
T ss_pred             ChhHCcCHHHHhcCHhhcCCC
Confidence            999999999999999998754

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.7e-50  Score=372.21  Aligned_cols=207  Identities=17%  Similarity=0.242  Sum_probs=173.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~-   76 (379)
                      +.||+|+||+||+|+++.+|..||++++...    ...+.+.+|+.+|+.|+|||||++++++.+       +|++||| 
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~  111 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELM  111 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECC
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCC
Confidence            3699999999999999999999996544322    234568999999999999999999998753       6999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                       +|+|++.                    .|+.|||+      +|  |+||||||+|||+++.  ++.+||+|||+|+...
T Consensus       112 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~------~~~~IiHRDlKp~NILl~~~--~g~vKl~DFGla~~~~  183 (290)
T 3fpq_A          112 TSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT------RTPPIIHRDLKCDNIFITGP--TGSVKIGDLGLATLKR  183 (290)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT------SSSCCCCCCCCGGGEEESST--TSCEEECCTTGGGGCC
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCCEEecccChhheeEECC--CCCEEEEeCcCCEeCC
Confidence             8898887                    67888888      88  9999999999999853  3799999999997543


Q ss_pred             cCccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                       .....+.+||+.||||              |+||++|+|+||++||.+.+ ...+...+..+..  |......++++++
T Consensus       184 -~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~  260 (290)
T 3fpq_A          184 -ASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK--PASFDKVAIPEVK  260 (290)
T ss_dssp             -TTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC--CGGGGGCCCHHHH
T ss_pred             -CCccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCC--CCCCCccCCHHHH
Confidence             3356678999999999              99999999999999997654 4555666655533  3344567899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      +||.+||..||++|||++|+|+||||++
T Consensus       261 ~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          261 EIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             HHHHHHccCChhHCcCHHHHhcCccccC
Confidence            9999999999999999999999999975

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-50  Score=384.66  Aligned_cols=207  Identities=18%  Similarity=0.237  Sum_probs=175.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||+||+|+++.+|+.||+ |.+..     ...+.+.+|+.+|+.|+|||||++++++.+   +|+||||  +|
T Consensus        30 ~~lG~G~fg~V~~a~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg  108 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTEDGRQYVI-KEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGG  108 (350)
T ss_dssp             EEC------CEEEEEETTTCCEEEE-EEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEE-EEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCC
Confidence            4799999999999999999999985 44432     234679999999999999999999999875   8999999  78


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|++.                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......
T Consensus       109 ~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~------~~IiHRDlKp~NILl~~~---g~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          109 DLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD------RKILHRDIKSQNIFLTKD---GTVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH------TTCEETTCCGGGEEECTT---CCEEECSTTEESCCCHHH
T ss_pred             cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCCHHHEEECCC---CCEEEcccccceeecCCc
Confidence            88876                      67888888      999999999999999985   899999999998765432


Q ss_pred             -cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 -EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 -~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       ...+.+||+.||||               |+||++|+|++|++||.+.+..+++.++..+.++.   .+..+|+++++|
T Consensus       180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~---~~~~~s~~~~~l  256 (350)
T 4b9d_A          180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPP---VSLHYSYDLRSL  256 (350)
T ss_dssp             HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCC---CCTTSCHHHHHH
T ss_pred             ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCC---CCccCCHHHHHH
Confidence             34567899999999               99999999999999999999999999999887543   234789999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||++|||++|+|+||||+...
T Consensus       257 i~~~L~~dP~~R~s~~e~l~hp~~~~~~  284 (350)
T 4b9d_A          257 VSQLFKRNPRDRPSVNSILEKGFIAKRI  284 (350)
T ss_dssp             HHHHTCSSGGGSCCHHHHHTSHHHHTTG
T ss_pred             HHHHccCChhHCcCHHHHhcCHHhhcCC
Confidence            9999999999999999999999997643

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.5e-49  Score=385.24  Aligned_cols=210  Identities=18%  Similarity=0.275  Sum_probs=183.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEec--ccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKER--NVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|+++.||+.||++++.  .....+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|+|+
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~  236 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  236 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHH
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHH
Confidence            37999999999999999999999954432  22445679999999999999999999998765   8999999  88888


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-cccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~~~~  141 (379)
                      +.                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.+... ....+.
T Consensus       237 ~~i~~~~l~e~~~~~~~~qil~aL~ylH~------~~IiHRDiKp~NILl~~~---g~vKl~DFGla~~~~~~~~~~~~~  307 (423)
T 4fie_A          237 DIVTHTRMNEEQIAAVCLAVLQALSVLHA------QGVIHRDIKSDSILLTHD---GRVKLSDFGFCAQVSKEVPRRKSL  307 (423)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSTTTEEECTT---CCEEECCCTTCEECCSSCCCBCCC
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHH------CCeecccCCHHHEEEcCC---CCEEEecCccceECCCCCcccccc
Confidence            77                   67888888      999999999999999986   89999999999987543 346678


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +||+.||||               |+||++|+|++|++||.+.+..+.+..|...... ....+..+|+++++||.+||.
T Consensus       308 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~~dli~~~L~  386 (423)
T 4fie_A          308 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP-RLKNLHKVSPSLKGFLDRLLV  386 (423)
T ss_dssp             EECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC-CCSCTTSSCHHHHHHHHHHSC
T ss_pred             ccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCC-CCcccccCCHHHHHHHHHHcC
Confidence            999999999               9999999999999999999999999988876432 223446799999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||++|||++|+|+||||+...
T Consensus       387 ~dP~~R~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          387 RDPAQRATAAELLKHPFLAKAG  408 (423)
T ss_dssp             SSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CChhHCcCHHHHhcCHHhcCCC
Confidence            9999999999999999998654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.9e-50  Score=376.85  Aligned_cols=211  Identities=24%  Similarity=0.301  Sum_probs=177.0

Q ss_pred             ccCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEK---TTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||+|+||+||+|++.   .+++.|| +|.+..     .+...+.+|+.+|+.|+|||||++++++.+   +|++|||
T Consensus        29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vA-iK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy  107 (304)
T 3ubd_A           29 LKVLGQGSFGKVFLVKKISGSDARQLYA-MKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDF  107 (304)
T ss_dssp             EEEEECGGGCEEEEEEECSSTTTTCEEE-EEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECC
T ss_pred             EEEEecCCCeEEEEEEEccCCCCCEEEE-EEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEc
Confidence            348999999999999984   4677777 454432     234568999999999999999999999765   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                        +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....
T Consensus       108 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~------~~IiHRDlKp~NILl~~~---g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          108 LRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS------LGIIYRDLKPENILLDEE---GHIKLTDFGLSKESID  178 (304)
T ss_dssp             CTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSSCCGGGEEECTT---SCEEEESSEEEEC---
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCcCCCCCHHHeEEcCC---CCEEecccccceeccC
Confidence              8899887                    67888888      999999999999999986   8999999999987543


Q ss_pred             C-ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         135 G-IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       135 ~-~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      . ....+.+||+.||||               |+||++|+|+||++||.+.+..+++..|.++.+.+|.    .+|++++
T Consensus       179 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~----~~s~~~~  254 (304)
T 3ubd_A          179 HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQ----FLSPEAQ  254 (304)
T ss_dssp             --CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHH
T ss_pred             CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCC----cCCHHHH
Confidence            3 345678999999999               9999999999999999999999999999998887765    5899999


Q ss_pred             HHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         199 DFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      +||.+||+.||++|||     ++|+++||||++.+|...
T Consensus       255 ~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l  293 (304)
T 3ubd_A          255 SLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKL  293 (304)
T ss_dssp             HHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCHHHH
Confidence            9999999999999998     589999999999887654

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-49  Score=380.60  Aligned_cols=217  Identities=21%  Similarity=0.234  Sum_probs=181.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      +.||+|+||+||+|+++.||+.||++++...    .....+.+|+.+|+.|+|||||++++++.         .+|++||
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE  139 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLD  139 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEE
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEe
Confidence            4899999999999999999999995544332    22356889999999999999999999864         3699999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | .|.|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.+..
T Consensus       140 ~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~------~~iiHRDlKP~NIl~~~~---~~~Ki~DFGla~~~~~  210 (398)
T 4b99_A          140 LMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHS------AQVIHRDLKPSNLLVNEN---CELKIGDFGMARGLCT  210 (398)
T ss_dssp             CCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---CCEEECCCTTCBCC--
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CcCcCCCcCccccccCCC---CCEEEeecceeeeccc
Confidence            9 7777776                    67888888      999999999999999985   8999999999987643


Q ss_pred             C-----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc------
Q psy6046         135 G-----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD------  187 (379)
Q Consensus       135 ~-----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~------  187 (379)
                      .     ....+.+||+.||||                |+||++|+|++|++||.+.+..+++..|......++.      
T Consensus       211 ~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~  290 (398)
T 4b99_A          211 SPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAV  290 (398)
T ss_dssp             -----CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC--
T ss_pred             CccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhh
Confidence            2     235578999999999                9999999999999999999999988888654332221      


Q ss_pred             ---------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         188 ---------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       188 ---------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                                           ..++.+|++++|||.+||..||++|||++|+|+||||++.......+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~p~~~p  358 (398)
T 4b99_A          291 GAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEP  358 (398)
T ss_dssp             ---CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCCGGGSC
T ss_pred             hhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCCCcccc
Confidence                                 12346799999999999999999999999999999999876554433

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.6e-48  Score=368.12  Aligned_cols=207  Identities=18%  Similarity=0.151  Sum_probs=174.0

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH-
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA-   83 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~-   83 (379)
                      .||+|+||+||+|+++.||+.||+ |.+....  ...+|+.+|+.|+|||||++|+++.+   +|++|||  +|+|++. 
T Consensus        65 ~lG~G~fG~Vy~a~~~~~g~~vAi-K~i~~~~--~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l  141 (336)
T 4g3f_A           65 RVGRGSFGEVHRMKDKQTGFQCAV-KKVRLEV--FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLI  141 (336)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEE-EEEETTT--CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHH
T ss_pred             EeccCCCeEEEEEEECCCCCEEEE-EEECHHH--hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHH
Confidence            699999999999999999999995 5444322  23579999999999999999999765   8999999  8899887 


Q ss_pred             -------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc------c
Q psy6046          84 -------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE------I  138 (379)
Q Consensus        84 -------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~------~  138 (379)
                                         .|+.|||+      +||+||||||+|||++.+  ...+||+|||+|+.......      .
T Consensus       142 ~~~~~l~e~~~~~~~~qi~~aL~ylH~------~~IiHRDlKp~NILl~~~--g~~vKl~DFGla~~~~~~~~~~~~~~~  213 (336)
T 4g3f_A          142 KQMGCLPEDRALYYLGQALEGLEYLHT------RRILHGDVKADNVLLSSD--GSRAALCDFGHALCLQPDGLGKSLLTG  213 (336)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHT------TTEECSCCCGGGEEECTT--SCCEEECCCTTCEEC------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecccCHHHEEEeCC--CCEEEEeeCCCCeEccCCCcccceecC
Confidence                               67888888      999999999999999875  13699999999987654321      2


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...+||+.||||               |+||++|+|+||++||.+.+..+++.+|..+..++ ...++.+|+++++||.+
T Consensus       214 ~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~~~li~~  292 (336)
T 4g3f_A          214 DYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPI-REIPPSCAPLTAQAIQE  292 (336)
T ss_dssp             CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGG-GGSCTTSCHHHHHHHHH
T ss_pred             CccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCc-hhcCccCCHHHHHHHHH
Confidence            346899999999               99999999999999999988888888888876543 23456899999999999


Q ss_pred             hcccCCCCCCCHHHH-------------hcCccccCCc
Q psy6046         204 ILIKNPMERMTAKEA-------------LKHPWLMNKK  228 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~-------------l~hp~~~~~~  228 (379)
                      ||..||++|||+.|+             |+|||+.+..
T Consensus       293 ~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~  330 (336)
T 4g3f_A          293 GLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYK  330 (336)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCC
T ss_pred             HccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCCC
Confidence            999999999999997             6799997654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=6e-47  Score=383.43  Aligned_cols=216  Identities=25%  Similarity=0.429  Sum_probs=194.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||+||+|+++.||+.||++.+...  .+.+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|+|
T Consensus       162 ~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L  241 (573)
T 3uto_A          162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL  241 (573)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcH
Confidence            45899999999999999999999985443322  334678999999999999999999999876   8999999  8898


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ++.                     .|+.|||+      +||+||||||+|||++.+. .+.+||+|||+|+.+.......
T Consensus       242 ~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~------~~iiHRDlKp~Nill~~~~-~~~vKl~DFG~a~~~~~~~~~~  314 (573)
T 3uto_A          242 FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE------NNYVHLDLKPENIMFTTKR-SNELKLIDFGLTAHLDPKQSVK  314 (573)
T ss_dssp             HHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSSS-CCCEEECCCSSCEECCTTSEEE
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeccCChhhccccCCC-CCCEEEeeccceeEccCCCcee
Confidence            876                     67888888      9999999999999998642 3789999999999987777778


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+||+.||||               |+||++|+|++|.+||.+.+..+.+..|..+.+.++...+..+|+++++||.+|
T Consensus       315 ~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~  394 (573)
T 3uto_A          315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKL  394 (573)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTT
T ss_pred             eeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            88999999999               999999999999999999999999999999999998888899999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCccc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      |..||.+|||+.|+|+||||+...+.
T Consensus       395 L~~dp~~R~t~~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          395 LLADPNTRMTIHQALEHPWLTPGNAP  420 (573)
T ss_dssp             SCSSGGGSCCHHHHHHSTTTSCCCCT
T ss_pred             ccCChhHCcCHHHHhcCcCcCCCCCC
Confidence            99999999999999999999977654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2e-46  Score=359.09  Aligned_cols=212  Identities=20%  Similarity=0.231  Sum_probs=167.2

Q ss_pred             ccCcCCCCceEEEEEEEc---CCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEK---TTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||+||+|+++   .+++.||++++.......++.+|+++|+.+ +|||||++++++.+   +|++|||  +|
T Consensus        26 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~  105 (361)
T 4f9c_A           26 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHE  105 (361)
T ss_dssp             EEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCC
T ss_pred             EEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcc
Confidence            348999999999999875   356677755555555566789999999998 59999999998765   8999999  78


Q ss_pred             hhhHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC------
Q psy6046          79 PVYQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG------  135 (379)
Q Consensus        79 ~l~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~------  135 (379)
                      +|++.                 .|+.|||+      +||+||||||+|||++.+  .+.+||+|||+|+.....      
T Consensus       106 ~L~~~~~~l~~~~~~~~~~qll~al~ylH~------~gIiHRDiKPeNiLl~~~--~~~~kl~DFGla~~~~~~~~~~~~  177 (361)
T 4f9c_A          106 SFLDILNSLSFQEVREYMLNLFKALKRIHQ------FGIVHRDVKPSNFLYNRR--LKKYALVDFGLAQGTHDTKIELLK  177 (361)
T ss_dssp             CHHHHHTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEETT--TTEEEECCCTTCEECTTCSCGGGG
T ss_pred             cHHHHHcCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCcCCHHHeEEeCC--CCeEEECcCCCCcccCCccccccc
Confidence            88877                 68888888      999999999999999865  378999999999865322      


Q ss_pred             -----------------------ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCC-CChHHHH
Q psy6046         136 -----------------------IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGG-ETDSETF  175 (379)
Q Consensus       136 -----------------------~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~-~~~~~~~  175 (379)
                                             ....+.+||+.|+||                |+||++|+|++|++||.+ .+..+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l  257 (361)
T 4f9c_A          178 FVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTAL  257 (361)
T ss_dssp             GC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHH
T ss_pred             cccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHH
Confidence                                   123456899999999                999999999999999954 4444554


Q ss_pred             HHHHhC--------------------------------------CCCC------------CcccccCCCHHHHHHHHHhc
Q psy6046         176 RNISKA--------------------------------------QLDF------------PDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       176 ~~i~~~--------------------------------------~~~~------------~~~~~~~~s~~~~~li~~~L  205 (379)
                      ..|...                                      ....            ....|..+|++++|||.+||
T Consensus       258 ~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL  337 (361)
T 4f9c_A          258 AQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLL  337 (361)
T ss_dssp             HHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHT
T ss_pred             HHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHC
Confidence            444220                                      0000            11235678999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccCC
Q psy6046         206 IKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..||++|||++|+|+||||++.
T Consensus       338 ~~dP~~R~ta~eaL~Hp~f~~i  359 (361)
T 4f9c_A          338 DLNPASRITAEEALLHPFFKDM  359 (361)
T ss_dssp             CSCTTTSCCHHHHHTSGGGTTC
T ss_pred             cCChhHCcCHHHHhcCcccCCC
Confidence            9999999999999999999865

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.7e-45  Score=366.97  Aligned_cols=214  Identities=25%  Similarity=0.427  Sum_probs=187.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc-----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN-----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .++||+|+||+||+|+++.+|+.||+ |...     ......+.+|+.+|+.++||||+++++++.+   +|+++||  +
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  105 (486)
T 3mwu_A           27 VCMLGKGSFGEVLKCKDRITQQEYAV-KVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG  105 (486)
T ss_dssp             EEEEECCSSSEEEEEEETTTCCEEEE-EEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEE-EEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCC
Confidence            34899999999999999999999885 4432     2345678999999999999999999998765   7999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|++.                    .|+.|||+      +||+||||||+|||++..+..+.+||+|||+++.......
T Consensus       106 ~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~  179 (486)
T 3mwu_A          106 GELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK------HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK  179 (486)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC--
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCc
Confidence            787665                    67888888      9999999999999998665557899999999987766656


Q ss_pred             ccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       138 ~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ....+||+.|+||              |+||++|+|++|.+||.+.+..+.+..+..+.+.++.+.|..+|+++++||.+
T Consensus       180 ~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  259 (486)
T 3mwu_A          180 MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRK  259 (486)
T ss_dssp             --CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHH
T ss_pred             cCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHH
Confidence            6678899999999              99999999999999999999999999999999888888888999999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCCc
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||..||.+|||+.++|+||||+...
T Consensus       260 ~L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          260 MLTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             HTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             HcCCChhhCcCHHHHhcCHhhccCc
Confidence            9999999999999999999998765

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.4e-46  Score=349.59  Aligned_cols=207  Identities=19%  Similarity=0.232  Sum_probs=157.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---------------
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------------   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------------   69 (379)
                      .+.||+|+||+||+|+++.+|+.||++++...   ...+.+.+|+.+|+.|+|||||++++++.+               
T Consensus        10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~   89 (299)
T 4g31_A           10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVY   89 (299)
T ss_dssp             EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEE
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcE
Confidence            45899999999999999999999995443222   223568999999999999999999998642               


Q ss_pred             ceEEeeC--CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          70 PLLGLNP--RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        70 ~~~v~e~--~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                      +|++|||  +|+|.+.                       .|+.|||+      +||+||||||+|||++.+   +.+||+
T Consensus        90 l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~------~~IiHRDlKp~NILl~~~---~~vKl~  160 (299)
T 4g31_A           90 LYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS------KGLMHRDLKPSNIFFTMD---DVVKVG  160 (299)
T ss_dssp             EEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEEC
T ss_pred             EEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH------CcCccccCcHHHeEECCC---CcEEEc
Confidence            5899999  6777665                       57888888      999999999999999986   899999


Q ss_pred             ecccceeeccCc-------------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh-HHHH
Q psy6046         125 DFEISRVILDGI-------------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD-SETF  175 (379)
Q Consensus       125 DFG~a~~~~~~~-------------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~-~~~~  175 (379)
                      |||+|+......             ...+.+||+.||||               |+||++|+|++   ||.+... ...+
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~  237 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTL  237 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHH
Confidence            999998765432             12346899999999               99999999996   8865432 2334


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ..+....  +|+ .+...++.+.+||.+||+.||++|||+.|+|+||||++..+
T Consensus       238 ~~~~~~~--~p~-~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  288 (299)
T 4g31_A          238 TDVRNLK--FPP-LFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDLDF  288 (299)
T ss_dssp             HHHHTTC--CCH-HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC--
T ss_pred             HHHhcCC--CCC-CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCCCC
Confidence            4444433  332 33456788999999999999999999999999999987664

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.9e-45  Score=372.39  Aligned_cols=211  Identities=17%  Similarity=0.199  Sum_probs=178.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHH---HHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDE---EQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E---~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      ...+||+|+||+||+|+++.||+.|| +|++..      .....+.+|   +.+++.++|||||++++++++   +|+||
T Consensus       193 i~k~LG~G~fG~V~la~~~~tg~~~A-iK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVm  271 (689)
T 3v5w_A          193 VHRIIGRGGFGEVYGCRKADTGKMYA-MKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL  271 (689)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEE-EEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEE-EEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEE
Confidence            34589999999999999999999999 455432      122334444   566777899999999999876   89999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +|+|+..                    .|+.|||+      +|||||||||+|||++.+   +.+||+|||+|+..
T Consensus       272 Ey~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~------~gIiHRDLKPeNILld~~---G~vKL~DFGlA~~~  342 (689)
T 3v5w_A          272 DLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHN------RFVVYRDLKPANILLDEH---GHVRISDLGLACDF  342 (689)
T ss_dssp             CCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCSGGGEEECTT---SCEEECCCTTCEEC
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCchHHeEEeCC---CCEEecccceeeec
Confidence            99  8999887                    67888888      999999999999999986   89999999999887


Q ss_pred             ccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCCcccccCC
Q psy6046         133 LDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       133 ~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ... ...+.|||+.||||                |+||++|+|++|++||.+.   +..++...+....+.+|.    .+
T Consensus       343 ~~~-~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~----~~  417 (689)
T 3v5w_A          343 SKK-KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD----SF  417 (689)
T ss_dssp             SSC-CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCT----TS
T ss_pred             CCC-CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCc----cC
Confidence            544 45678999999999                9999999999999999763   344667777777777664    58


Q ss_pred             CHHHHHHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         194 SPEAKDFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      |+++++||.+||..||.+|++     ++|+++||||++.+|...
T Consensus       418 S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l  461 (689)
T 3v5w_A          418 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMV  461 (689)
T ss_dssp             CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHH
T ss_pred             CHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHH
Confidence            999999999999999999998     799999999999887654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1e-44  Score=362.00  Aligned_cols=214  Identities=29%  Similarity=0.454  Sum_probs=187.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|+++.++..+|++....    ......+.+|+.+++.++||||+++++++.+   +|++|||  +|+
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~  122 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGE  122 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCB
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCc
Confidence            489999999999999999999988533322    2335678999999999999999999999765   8999999  778


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |++.                    .|+.|||+      +||+||||||+|||++..+..+.+||+|||+++.........
T Consensus       123 L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~  196 (494)
T 3lij_A          123 LFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHK------HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMK  196 (494)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcccc
Confidence            8765                    67888888      999999999999999876545779999999999887666667


Q ss_pred             ccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhc
Q psy6046         140 ELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       140 ~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  205 (379)
                      ..+||+.|+||              |+||++|+|++|.+||.+.+..+.+..+..+.+.++.+.|..+|+.+++||.+||
T Consensus       197 ~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  276 (494)
T 3lij_A          197 ERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQML  276 (494)
T ss_dssp             CCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHT
T ss_pred             ccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHC
Confidence            78899999999              9999999999999999999999999999999999988888999999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccCCc
Q psy6046         206 IKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..||.+|||+.++|+||||+...
T Consensus       277 ~~dp~~R~s~~e~l~hp~~~~~~  299 (494)
T 3lij_A          277 QFDSQRRISAQQALEHPWIKEMC  299 (494)
T ss_dssp             CSSTTTSCCHHHHHTCHHHHHHH
T ss_pred             CCChhhCccHHHHhcCcccccCc
Confidence            99999999999999999998653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.7e-44  Score=359.90  Aligned_cols=215  Identities=25%  Similarity=0.354  Sum_probs=187.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---------------ccchHHHHHHHHHHhCCCCCcceeeeecCc---
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---------------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---------------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---   69 (379)
                      .+.||+|+||.||+|+++.+++.+|++.....               ...+.+.+|+.+|+.++||||+++++++.+   
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  120 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY  120 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            45899999999999999999999885333221               123568999999999999999999999765   


Q ss_pred             ceEEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          70 PLLGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        70 ~~~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      +|+++||  +|+|++.                    .|+.|||+      +||+||||||+|||++.++....+||+|||
T Consensus       121 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg  194 (504)
T 3q5i_A          121 FYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHK------HNIVHRDIKPENILLENKNSLLNIKIVDFG  194 (504)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEESSTTCCSSEEECCCT
T ss_pred             EEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCCCcHHHEEEecCCCCccEEEEECC
Confidence            7999999  7788765                    67888888      999999999999999986444579999999


Q ss_pred             cceeeccCccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         128 ISRVILDGIEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       128 ~a~~~~~~~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      +++...........+||+.|+||              |+||++|+|++|.+||.+.+..+.+..+..+.+.++...|..+
T Consensus       195 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  274 (504)
T 3q5i_A          195 LSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNI  274 (504)
T ss_dssp             TCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTS
T ss_pred             CCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCC
Confidence            99987766666778899999999              9999999999999999999999999999999998888888899


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |+++++||.+||..||.+|||++|+|+||||+...
T Consensus       275 s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          275 SDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             CHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhch
Confidence            99999999999999999999999999999998654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.3e-44  Score=360.41  Aligned_cols=214  Identities=25%  Similarity=0.398  Sum_probs=189.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc------cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN------VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ++||+|+||.||+|+++.+|+.||+ |...      ......+.+|+.+++.++||||+++++++.+   +|+++||  +
T Consensus        32 ~~lg~G~~g~V~~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  110 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDKITGQECAV-KVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTG  110 (484)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEE-EEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            4899999999999999999999885 4432      2334679999999999999999999999765   7999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|++.                    .|+.|||+      +||+||||||+|||++..+.++.+||+|||+++.......
T Consensus       111 ~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~  184 (484)
T 3nyv_A          111 GELFDEIISRKRFSEVDAARIIRQVLSGITYMHK------NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK  184 (484)
T ss_dssp             CBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCS
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccc
Confidence            787765                    67888888      9999999999999997654468999999999987766656


Q ss_pred             ccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       138 ~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ....+||+.|+||              |+||++|+|++|.+||.+.+..+.+..+..+.+.++.+.|..+|+++++||.+
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  264 (484)
T 3nyv_A          185 MKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRK  264 (484)
T ss_dssp             HHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHH
T ss_pred             cccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHH
Confidence            6678899999999              99999999999999999999999999999999888888888999999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ||..||.+|||+.|+|+||||+...+
T Consensus       265 ~L~~dp~~R~s~~e~l~h~~~~~~~~  290 (484)
T 3nyv_A          265 MLTYVPSMRISARDALDHEWIQTYTK  290 (484)
T ss_dssp             HTCSSGGGSCCHHHHHTSHHHHHHTC
T ss_pred             HCCCChhHCcCHHHHhhChhhccccc
Confidence            99999999999999999999986543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=338.23  Aligned_cols=201  Identities=16%  Similarity=0.178  Sum_probs=160.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      .+.||+|+||+||+|++..   .|| +|....     ...+.+.+|+.+|+.|+|||||++++++.+  +|+||||  +|
T Consensus        41 ~~~iG~G~fG~Vy~~~~~~---~vA-vK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gG  116 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKWHG---DVA-VKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGS  116 (307)
T ss_dssp             EEECCCCSSSEEEEEESSS---EEE-EEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSC
T ss_pred             eeEEeeCCCcEEEEEEECC---cEE-EEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCC
Confidence            4479999999999998543   355 454432     224568999999999999999999998765  8999999  88


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC--
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG--  135 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~--  135 (379)
                      +|++.                     .|+.|||+      +||+||||||+|||++++   +.+||+|||+|+.....  
T Consensus       117 sL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~------~~IiHRDlKp~NILl~~~---~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          117 SLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA------KNIIHRDMKSNNIFLHEG---LTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             BHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH------TTCBCSCCCSSSEEEETT---EEEEECCCSSCBC------
T ss_pred             CHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCccCCccCHHHEEECCC---CcEEEeeccCceecccCCc
Confidence            98886                     67888888      999999999999999985   89999999999875432  


Q ss_pred             -ccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC--cccccCCC
Q psy6046         136 -IEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP--DELFEDIS  194 (379)
Q Consensus       136 -~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~s  194 (379)
                       ......+||+.||||                  |+||++|||+||+.||.+.+....+..+.......|  ...+..+|
T Consensus       188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  267 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCP  267 (307)
T ss_dssp             ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSC
T ss_pred             ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccch
Confidence             234567899999999                  999999999999999998766555554444333322  34456789


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +++.+||.+||+.||++|||+.|++++
T Consensus       268 ~~l~~li~~cl~~dP~~RPs~~ei~~~  294 (307)
T 3omv_A          268 KAMKRLVADCVKKVKEERPLFPQILSS  294 (307)
T ss_dssp             HHHHHHHHHHTCSSSTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            999999999999999999999988654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.6e-45  Score=340.06  Aligned_cols=207  Identities=18%  Similarity=0.142  Sum_probs=169.5

Q ss_pred             CccCcCCCCceEEEEEEEcC-----CCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           7 ASHVGGNRARSSCSRKPEKT-----TKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ..+.||+|+||+||+|++..     +|..|| +|....   ...+.+.+|+++|+.|+|||||++++++.+   +|++||
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vA-vK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E   95 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVA-VKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFE   95 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEE-EEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEE-EEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEE
Confidence            34579999999999998753     466677 455443   234569999999999999999999999875   899999


Q ss_pred             C--CchhhHH---------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCc
Q psy6046          76 P--RPPVYQA---------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCD  120 (379)
Q Consensus        76 ~--~g~l~~~---------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~  120 (379)
                      |  +|+|.+.                                 .|+.|||+      ++|+||||||+|||++++   +.
T Consensus        96 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~------~~iiHRDlKp~NILl~~~---~~  166 (299)
T 4asz_A           96 YMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS------QHFVHRDLATRNCLVGEN---LL  166 (299)
T ss_dssp             CCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GC
T ss_pred             cCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCccCHhhEEECCC---Cc
Confidence            9  7887653                                 57888888      999999999999999986   89


Q ss_pred             EEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhC
Q psy6046         121 IKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKA  181 (379)
Q Consensus       121 ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~  181 (379)
                      +||+|||+|+.......   ....+||+.||||               |+||++|||+| |+.||.+.+..+++..+..+
T Consensus       167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~  246 (299)
T 4asz_A          167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG  246 (299)
T ss_dssp             EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHT
T ss_pred             EEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC
Confidence            99999999987644332   2335799999999               99999999998 99999999999999999887


Q ss_pred             CCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         182 QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       182 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .....   +..+|+++.+||.+||..||++|||++++.  +|+++..
T Consensus       247 ~~~~~---p~~~~~~~~~li~~cl~~dP~~RPs~~~i~--~~L~~~~  288 (299)
T 4asz_A          247 RVLQR---PRTCPQEVYELMLGCWQREPHMRKNIKGIH--TLLQNLA  288 (299)
T ss_dssp             CCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHH--HHHHHHH
T ss_pred             CCCCC---CccchHHHHHHHHHHcCCChhHCcCHHHHH--HHHHHHH
Confidence            64322   236899999999999999999999999994  4776543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=337.08  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=160.7

Q ss_pred             ccCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEK-----TTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ++.||+|+||+||+|+++     .++..|| +|....   ...+.+.+|+++|+.|+|||||++++++.+   +|+||||
T Consensus        46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vA-vK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey  124 (329)
T 4aoj_A           46 KWELGEGAFGKVFLAECHNLLPEQDKMLVA-VKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY  124 (329)
T ss_dssp             EEEEEECSSEEEEEEEESSSCC---CEEEE-EEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             EEEEccCCCcEEEEEEECCcccCCCCeEEE-EEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            347999999999999865     3566677 455443   234569999999999999999999999875   8999999


Q ss_pred             --CchhhHH-----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          77 --RPPVYQA-----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        77 --~g~l~~~-----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                        +|+|.++                                   .|+.|||+      ++|+||||||+|||++.+   +
T Consensus       125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~------~~iiHRDLKp~NILl~~~---~  195 (329)
T 4aoj_A          125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG------LHFVHRDLATRNCLVGQG---L  195 (329)
T ss_dssp             CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEETT---T
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc------CCeecccccHhhEEECCC---C
Confidence              7888652                                   67888888      999999999999999985   8


Q ss_pred             cEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh
Q psy6046         120 DIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK  180 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~  180 (379)
                      .+||+|||+|+......   .....+||+.||||               |+||++|||+| |+.||.+.+..+.+..+..
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~  275 (329)
T 4aoj_A          196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQ  275 (329)
T ss_dssp             EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHH
T ss_pred             cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence            99999999998764432   23456799999999               99999999999 9999999999999999888


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +....   .+..+|+++.+||.+||..||++|||+.|++.+
T Consensus       276 g~~~~---~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          276 GRELE---RPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             TCCCC---CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             CCCCC---CcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            75321   224689999999999999999999999999873

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.8e-43  Score=339.18  Aligned_cols=215  Identities=31%  Similarity=0.480  Sum_probs=189.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      .+.||+|+||.||+|+++.+|+.||+ |.....         ..+.+.+|+.+|+.++||||+++++++.+   +|++||
T Consensus        17 ~~~LG~G~fg~V~~~~~~~~~~~~av-K~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e   95 (361)
T 2yab_A           17 GEELGSGQFAIVKKCREKSTGLEYAA-KFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILE   95 (361)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eeEEeeCcCEEEEEEEECCCCCEEEE-EEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEE
Confidence            45899999999999999999999885 443321         23568999999999999999999998765   899999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceee
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVI  132 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~  132 (379)
                      |  +|+|++.                    .|+.|||+      +||+||||||+|||++.++ +...+||+|||++...
T Consensus        96 ~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~  169 (361)
T 2yab_A           96 LVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHT------KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI  169 (361)
T ss_dssp             CCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEEC
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEc
Confidence            9  7888776                    67888888      9999999999999998752 1227999999999987


Q ss_pred             ccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         133 LDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       133 ~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .........+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+..+.+.++...|..+|+.+
T Consensus       170 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  249 (361)
T 2yab_A          170 EDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELA  249 (361)
T ss_dssp             CTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHH
T ss_pred             CCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHH
Confidence            766666778899999999               99999999999999999999999999999999999888888999999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ++||.+||..||.+|||+.|+++||||....+
T Consensus       250 ~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~  281 (361)
T 2yab_A          250 KDFIRKLLVKETRKRLTIQEALRHPWITPVDT  281 (361)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHHTSTTTSCSSH
T ss_pred             HHHHHHHCCCChhHCcCHHHHhcCcCcCCCch
Confidence            99999999999999999999999999987654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.6e-43  Score=331.59  Aligned_cols=200  Identities=12%  Similarity=0.096  Sum_probs=167.6

Q ss_pred             cCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEK-----TTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||+||+|+..     .+++.|| +|....    ...+.+.+|+.+|+.|+|||||++++++.+   +|+||||
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VA-vK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey  110 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVA-IKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY  110 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEE-EEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEE-EEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEc
Confidence            36999999999999853     3566677 555433    224679999999999999999999999865   8999999


Q ss_pred             --CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC
Q psy6046          77 --RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN  118 (379)
Q Consensus        77 --~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~  118 (379)
                        +|+|.++                                    .|+.|||+      ++|+||||||+|||++++   
T Consensus       111 ~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~------~~iiHRDLK~~NILl~~~---  181 (308)
T 4gt4_A          111 CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS------HHVVHKDLATRNVLVYDK---  181 (308)
T ss_dssp             CSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---
T ss_pred             CCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh------CCCCCCCccccceEECCC---
Confidence              7887653                                    57888888      999999999999999986   


Q ss_pred             CcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHH
Q psy6046         119 CDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNIS  179 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~  179 (379)
                      +.+||+|||+|+......   .....+||+.||||               |+||++|||+| |..||.+.+..++...+.
T Consensus       182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~  261 (308)
T 4gt4_A          182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIR  261 (308)
T ss_dssp             GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHH
T ss_pred             CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            899999999998764332   23456899999999               99999999998 899999999999999998


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+.....   +..+|+++.+|+.+||..||++|||+.|++++
T Consensus       262 ~~~~~~~---p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          262 NRQVLPC---PDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             TTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cCCCCCC---cccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            8754322   24689999999999999999999999999874

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=6e-42  Score=324.56  Aligned_cols=209  Identities=22%  Similarity=0.332  Sum_probs=184.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      ...||+|+||.||+|++..+|+.||++.....    .....+.+|+.+|+.++||||+++++++.+   +|++|||  +|
T Consensus        20 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~   99 (328)
T 3fe3_A           20 LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGG   99 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCC
Confidence            34899999999999999999999985433222    234568899999999999999999998764   8999999  77


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ++++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.........
T Consensus       100 ~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~------~~ivHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~~~  170 (328)
T 3fe3_A          100 EVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQ------KRIVHRDLKAENLLLDAD---MNIKIADFGFSNEFTVGGKL  170 (328)
T ss_dssp             BHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECSTTCCGGGSSSCGG
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEeccCCCHHHEEEcCC---CCEEEeeccCceecCCCCcc
Confidence            87765                    67888888      999999999999999875   89999999999877666667


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ...+||+.|+||                |+||++|+|++|++||.+.+..+....+..+.+..|.    .+|+++.+||.
T Consensus       171 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~li~  246 (328)
T 3fe3_A          171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPF----YMSTDCENLLK  246 (328)
T ss_dssp             GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHHHHH
T ss_pred             ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHHHHHHH
Confidence            778999999999                9999999999999999999999999999998887765    47999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      +||..||.+|||++|+++||||.....
T Consensus       247 ~~L~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          247 RFLVLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             HHCCSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             HHCCCChhHCcCHHHHhcCHhhcCCCc
Confidence            999999999999999999999987553

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=334.56  Aligned_cols=215  Identities=27%  Similarity=0.430  Sum_probs=186.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|.++.+|+.+|++.+...    .+.+.+.+|+.+++.++||||+++++++.+   .|++|||  +|
T Consensus        16 ~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg   95 (444)
T 3soa_A           16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGG   95 (444)
T ss_dssp             EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCC
T ss_pred             EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCC
Confidence            34899999999999999999999885433322    234568999999999999999999998765   7999999  77


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      +|++.                    .|+.|||+      +||+||||||+|||++.+..++.+||+|||++....... .
T Consensus        96 ~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~------~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~  169 (444)
T 3soa_A           96 ELFEDIVAREYYSEADASHCIQQILEAVLHCHQ------MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA  169 (444)
T ss_dssp             BHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce
Confidence            88766                    67888888      999999999999999975445889999999998765433 3


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|.+||.+.+..+....+..+.+.++.+.|+.+|+++++||.
T Consensus       170 ~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  249 (444)
T 3soa_A          170 WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLIN  249 (444)
T ss_dssp             CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHH
T ss_pred             eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHH
Confidence            4567899999999               9999999999999999999999999999999999998888899999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||..||.+|||+.|+|+||||+...
T Consensus       250 ~~L~~dP~~Rpta~e~L~hp~~~~~~  275 (444)
T 3soa_A          250 KMLTINPSKRITAAEALKHPWISHRS  275 (444)
T ss_dssp             HHSCSSTTTSCCHHHHHHSCTTHHHH
T ss_pred             HHcCCChhHCCCHHHHhcCccccCCc
Confidence            99999999999999999999997543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.3e-41  Score=326.48  Aligned_cols=214  Identities=26%  Similarity=0.417  Sum_probs=188.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+.||+|+||.||+|.++.+|+.||+ |....     ...+.+.+|+.+++.|+||||+++++++.+   .|+++||  +
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~~av-K~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g  112 (362)
T 2bdw_A           34 KEELGKGAFSVVRRCVHKTTGLEFAA-KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG  112 (362)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEE-EEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence            34899999999999999999999885 44432     233568899999999999999999998765   7999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|++.                    .|+.|||+      +||+||||||+|||++.++..+.+||+|||++........
T Consensus       113 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~  186 (362)
T 2bdw_A          113 GELFEDIVAREFYSEADASHCIQQILESIAYCHS------NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA  186 (362)
T ss_dssp             CBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc
Confidence            788765                    67888888      9999999999999998765456799999999988766555


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|.+||.+.+..+....+..+.+.++...|..+++++++||.
T Consensus       187 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~  266 (362)
T 2bdw_A          187 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLID  266 (362)
T ss_dssp             CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHH
T ss_pred             cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Confidence            6678899999999               9999999999999999999999999999999998888888899999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||..||.+|||+.++|+||||....
T Consensus       267 ~~L~~dP~~R~t~~e~l~hp~~~~~~  292 (362)
T 2bdw_A          267 SMLTVNPKKRITADQALKVPWICNRE  292 (362)
T ss_dssp             HHSCSSGGGSCCHHHHTTSHHHHTHH
T ss_pred             HHcCCChhhCcCHHHHhcCcccCCCc
Confidence            99999999999999999999997643

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.1e-42  Score=323.03  Aligned_cols=215  Identities=29%  Similarity=0.442  Sum_probs=189.3

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      -..+.||+|+||.||+|.+..+|+.+|+ |....  .....+.+|+.+++.++||||+++++++.+   +|++|||  +|
T Consensus         8 ~~~~~lG~G~~g~Vy~~~~~~~~~~~a~-K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~   86 (321)
T 1tki_A            8 MIAEDLGRGEFGIVHRCVETSSKKTYMA-KFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEE-EEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             EeeeEEecCCCeEEEEEEECCCCcEEEE-EEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCC
Confidence            3445899999999999999999988885 44433  234568899999999999999999998764   8999999  67


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +|++.                     .|+.|||+      +||+||||||+|||++... ++.+||+|||+++.......
T Consensus        87 ~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~------~givH~Dlkp~NIl~~~~~-~~~~kl~Dfg~a~~~~~~~~  159 (321)
T 1tki_A           87 DIFERINTSAFELNEREIVSYVHQVCEALQFLHS------HNIGHFDIRPENIIYQTRR-SSTIKIIEFGQARQLKPGDN  159 (321)
T ss_dssp             BHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSSS-CCCEEECCCTTCEECCTTCE
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCCCcCCCCHHHEEEccCC-CCCEEEEECCCCeECCCCCc
Confidence            77766                     67888888      9999999999999998631 37899999999998876666


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|.+||.+.+..+....+..+...++...++.+|+++.+||.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  239 (321)
T 1tki_A          160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVD  239 (321)
T ss_dssp             EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHH
Confidence            6778899999999               9999999999999999999999999999999998888888899999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||..||.+|||+.|+|+||||++..
T Consensus       240 ~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          240 RLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             TTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             HHcCCChhHCcCHHHHhcChhhccCc
Confidence            99999999999999999999998654

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.4e-41  Score=327.41  Aligned_cols=220  Identities=22%  Similarity=0.289  Sum_probs=169.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecC-----cceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDP-----EPLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~-----~~~~v~e~   76 (379)
                      ....||+|+||.||+|.+..+|+.||++++...    .....+.+|+.+++.+. ||||+++++++.     .+|++|||
T Consensus        13 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~   92 (388)
T 3oz6_A           13 LVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDY   92 (388)
T ss_dssp             EEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEEC
T ss_pred             EEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecc
Confidence            345899999999999999999999996555332    33456889999999998 999999999864     37999999


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc--
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD--  134 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~--  134 (379)
                       .|.|...                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....  
T Consensus        93 ~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           93 METDLHAVIRANILEPVHKQYVVYQLIKVIKYLHS------GGLLHRDMKPSNILLNAE---CHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             CSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEESSSCC
T ss_pred             cCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh------CCEEeCCCCHHHeEEcCC---CCEEecCCcccccccccc
Confidence             6666554                   67888888      999999999999999885   8999999999987532  


Q ss_pred             --------------------CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHH
Q psy6046         135 --------------------GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNI  178 (379)
Q Consensus       135 --------------------~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i  178 (379)
                                          .......+||++|+||                |+||++|+|++|++||.+.+..+.+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i  243 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERI  243 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                                1123457899999999                9999999999999999999888877776


Q ss_pred             HhCCCCCCcc--------------------------------------------cccCCCHHHHHHHHHhcccCCCCCCC
Q psy6046         179 SKAQLDFPDE--------------------------------------------LFEDISPEAKDFIAKILIKNPMERMT  214 (379)
Q Consensus       179 ~~~~~~~~~~--------------------------------------------~~~~~s~~~~~li~~~L~~dP~~Rpt  214 (379)
                      .... ..|..                                            ....+++++.+||.+||..||++|||
T Consensus       244 ~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t  322 (388)
T 3oz6_A          244 IGVI-DFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRIS  322 (388)
T ss_dssp             HHHH-CCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             HHhc-CCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCC
Confidence            5321 11110                                            01267999999999999999999999


Q ss_pred             HHHHhcCccccCCcccccccCC
Q psy6046         215 AKEALKHPWLMNKKQIMTRVGC  236 (379)
Q Consensus       215 ~~e~l~hp~~~~~~~~~~~~~~  236 (379)
                      ++|+|+||||+........+.+
T Consensus       323 ~~e~l~Hp~~~~~~~~~~~~~~  344 (388)
T 3oz6_A          323 ANDALKHPFVSIFHNPNEEPNC  344 (388)
T ss_dssp             HHHHTTSTTTTTTCCGGGCCCC
T ss_pred             HHHHhCCHHHHHhcCCccCCCC
Confidence            9999999999887655544433

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=4e-41  Score=320.01  Aligned_cols=212  Identities=24%  Similarity=0.334  Sum_probs=184.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...+||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+|+.++||||+++++++.+   +|++||| 
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~   87 (337)
T 1o6l_A            9 YLKLLGKGTFGKVILVREKATGRYYAM-KILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYA   87 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEE-EEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCC
Confidence            345899999999999999999999884 54432      334678999999999999999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... .
T Consensus        88 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---g~vkL~DFG~a~~~~~~  158 (337)
T 1o6l_A           88 NGGELFFHLSRERVFTEERARFYGAEIVSALEYLHS------RDVVYRDIKLENLMLDKD---GHIKITDFGLCKEGISD  158 (337)
T ss_dssp             TTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCSCCT
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCcCCHHHEEECCC---CCEEEeeccchhhcccC
Confidence             7787665                    67888888      999999999999999875   899999999998643 3


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|.+||.+.+..+....+......+|.    .+|+++.+
T Consensus       159 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~  234 (337)
T 1o6l_A          159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR----TLSPEAKS  234 (337)
T ss_dssp             TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHH
T ss_pred             CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHH
Confidence            3345678899999999               9999999999999999999999999999888877765    58999999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         200 FIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       200 li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      ||.+||..||.+||     +++++++||||.+..|...
T Consensus       235 li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~  272 (337)
T 1o6l_A          235 LLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDV  272 (337)
T ss_dssp             HHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHHHH
Confidence            99999999999999     9999999999999887654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=6.9e-42  Score=326.06  Aligned_cols=199  Identities=18%  Similarity=0.186  Sum_probs=162.0

Q ss_pred             cCcCCCCceEEEEEEEcCCC-----cEEEEEEeccc----ccchHHHHHHHHHHhCCC-CCcceeeeecCc----ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTK-----REVVQWKERNV----SQGVVIVDEEQLLKLIKV-EPIEKYYSLDPE----PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg-----~~~a~~k~~~~----~~~~~~~~E~~il~~l~h-pnIv~~~~~~~~----~~~v~   74 (379)
                      +.||+|+||+||+|.+..++     +.|| +|....    .+...+.+|+.+|+.++| ||||++++++.+    +|++|
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VA-vK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~  148 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVA-VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV  148 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEE
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEE-EEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEE
Confidence            47999999999999987654     3455 555443    223568999999999986 899999998643    79999


Q ss_pred             eC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC
Q psy6046          75 NP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF  116 (379)
Q Consensus        75 e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~  116 (379)
                      ||  +|+|.++                                    .|+.|||+      ++||||||||+|||++++ 
T Consensus       149 Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~------~~iiHRDLK~~NILl~~~-  221 (353)
T 4ase_A          149 EFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS------RKCIHRDLAARNILLSEK-  221 (353)
T ss_dssp             ECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG-
T ss_pred             EcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh------CCeecCccCccceeeCCC-
Confidence            99  7777653                                    57888888      999999999999999986 


Q ss_pred             CCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh-HHHHH
Q psy6046         117 PNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD-SETFR  176 (379)
Q Consensus       117 ~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~-~~~~~  176 (379)
                        +.+||+|||+|+......   .....+||+.||||               |+||++|||+| |+.||.+.+. .....
T Consensus       222 --~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~  299 (353)
T 4ase_A          222 --NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR  299 (353)
T ss_dssp             --GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred             --CCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence              899999999998764432   23456799999999               99999999998 9999988654 45555


Q ss_pred             HHHhCCC-CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQL-DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+..+.. ..|    ..+|+++.+||.+||..||++|||+.|+++|
T Consensus       300 ~i~~g~~~~~p----~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          300 RLKEGTRMRAP----DYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             HHHHTCCCCCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCCCCCC----ccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            6665542 222    3689999999999999999999999999987

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=9e-41  Score=316.08  Aligned_cols=215  Identities=30%  Similarity=0.483  Sum_probs=187.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||+|+||.||+|++..+|+.||++......        ..+.+.+|+.+|+.++||||+++++++.+   +|+++||
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   95 (326)
T 2y0a_A           16 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILEL   95 (326)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEc
Confidence            358999999999999999999998853332211        24568999999999999999999998765   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|.+.                    .|+.|||+      +||+||||||+||+++.++ +...+||+|||+++...
T Consensus        96 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~  169 (326)
T 2y0a_A           96 VAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHS------LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  169 (326)
T ss_dssp             CCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH------CCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECC
Confidence              6777766                    67888888      9999999999999998762 22379999999999876


Q ss_pred             cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ........+||+.|+||               |+||++|+|++|..||.+.+..+.+..+......++...+..+|+.+.
T Consensus       170 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (326)
T 2y0a_A          170 FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAK  249 (326)
T ss_dssp             TTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHH
T ss_pred             CCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHH
Confidence            65556677899999999               999999999999999999999999999988888888877788999999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||+.|+|+||||+...
T Consensus       250 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  279 (326)
T 2y0a_A          250 DFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  279 (326)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHHSTTTSCCS
T ss_pred             HHHHHHccCChhhCCCHHHHhcCCCccCCc
Confidence            999999999999999999999999998654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.2e-41  Score=322.69  Aligned_cols=211  Identities=19%  Similarity=0.302  Sum_probs=179.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+||+|+||.||+|+++.+|+.||+ |+...      .....+.+|..+++.+ +||||+++++++.+   +|++||| 
T Consensus        28 ~~~lG~G~fg~V~~~~~~~~~~~~Av-K~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~  106 (353)
T 3txo_A           28 IRVLGKGSFGKVMLARVKETGDLYAV-KVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFV  106 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEeeCCCEEEEEEEEcCCCCEEEE-EEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCC
Confidence            34899999999999999999999884 44432      3345688999999998 69999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+... .
T Consensus       107 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~givHrDlkp~NILl~~~---g~ikL~DFG~a~~~~~~  177 (353)
T 3txo_A          107 NGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHD------KGIIYRDLKLDNVLLDHE---GHCKLADFGMCKEGICN  177 (353)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCSCC-
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCCcccCCCHHHEEECCC---CCEEEccccceeecccC
Confidence             7788765                    67888888      999999999999999886   899999999998643 2


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|.+||.+.+..+++..+..+...+|.    .+++++.+
T Consensus       178 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~  253 (353)
T 3txo_A          178 GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPT----WLHEDATG  253 (353)
T ss_dssp             --------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHH
T ss_pred             CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHH
Confidence            3345667899999999               9999999999999999999999999999999888775    48999999


Q ss_pred             HHHHhcccCCCCCCCH------HHHhcCccccCCccccc
Q psy6046         200 FIAKILIKNPMERMTA------KEALKHPWLMNKKQIMT  232 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~------~e~l~hp~~~~~~~~~~  232 (379)
                      ||.+||..||.+||++      +++++||||++..|...
T Consensus       254 li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l  292 (353)
T 3txo_A          254 ILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQL  292 (353)
T ss_dssp             HHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHHHH
Confidence            9999999999999998      89999999999887654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=5.9e-41  Score=317.26  Aligned_cols=214  Identities=24%  Similarity=0.348  Sum_probs=171.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +..||+|+||.||+|++..+|+.|| +|.........+.+|+.+++.+. ||||+++++++.+   .|++|||  +|+|.
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~va-vK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~   94 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFA-VKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELF   94 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEE-EEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEE-EEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHH
Confidence            4589999999999999999999888 56666555677899999999998 9999999998765   7999999  67877


Q ss_pred             HH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccccc
Q psy6046          82 QA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEIRE  140 (379)
Q Consensus        82 ~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~~~  140 (379)
                      +.                    .|+.|||+      +||+||||||+|||++.++.+..+||+|||+++..... .....
T Consensus        95 ~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~  168 (325)
T 3kn6_A           95 ERIKKKKHFSETEASYIMRKLVSAVSHMHD------VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKT  168 (325)
T ss_dssp             HHHHHCSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccc
Confidence            66                    67888888      99999999999999987644458999999999876443 23456


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhhCCCCCCCC-------ChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE-------TDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .+||+.|+||               |+||++|+|++|..||.+.       ...+....+..+.+.++...+..+|++++
T Consensus       169 ~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  248 (325)
T 3kn6_A          169 PCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAK  248 (325)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHH
T ss_pred             cCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHH
Confidence            7899999999               9999999999999999764       34678888999988888888889999999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||++++++||||++..
T Consensus       249 ~li~~~L~~dP~~Rpt~~ell~h~w~~~~~  278 (325)
T 3kn6_A          249 DLIQGLLTVDPNKRLKMSGLRYNEWLQDGS  278 (325)
T ss_dssp             HHHHHHHCCCTTTCCCTTTSTTCGGGCTTC
T ss_pred             HHHHHHCCCChhHCCCHHHHhcChhhccCc
Confidence            999999999999999999999999998764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.5e-41  Score=333.80  Aligned_cols=212  Identities=19%  Similarity=0.239  Sum_probs=166.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e   75 (379)
                      ..||+|+||.||+|++..+|+.||+++....    .....+.+|+.+|+.++||||+++++++..         +|++||
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E  147 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVME  147 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEE
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEe
Confidence            4799999999999999999999886554332    234568899999999999999999998742         599999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .|.+...                  .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       148 ~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~------~~iiHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~  218 (464)
T 3ttj_A          148 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTSF  218 (464)
T ss_dssp             CCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCCCCC-----CC
T ss_pred             CCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCChHhEEEeCC---CCEEEEEEEeeeecCCCc
Confidence            9 5545443                  67888888      999999999999999985   899999999998876665


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc-----------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF-----------  190 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~-----------  190 (379)
                      .....+||+.|+||               |+||++|+|++|++||.+.+..+.+..+.......++..+           
T Consensus       219 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~  298 (464)
T 3ttj_A          219 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV  298 (464)
T ss_dssp             CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHH
T ss_pred             ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHh
Confidence            66778999999999               9999999999999999999888777776542111110000           


Q ss_pred             ---------------c------------CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         191 ---------------E------------DISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       191 ---------------~------------~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                     +            ..++++++||.+||..||++|||++|+|+||||.....
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  364 (464)
T 3ttj_A          299 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYD  364 (464)
T ss_dssp             TTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             hcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhccC
Confidence                           0            01577999999999999999999999999999986543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=329.39  Aligned_cols=210  Identities=19%  Similarity=0.263  Sum_probs=181.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+|+.++||||+++++++.+   +|+++||  +
T Consensus        21 ~~LG~G~fG~V~~~~~~~~~~~~Ai-K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~g   99 (384)
T 4fr4_A           21 RAIGKGSFGKVCIVQKNDTKKMYAM-KYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLG   99 (384)
T ss_dssp             EEEECCTTCCEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEE-EEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            4899999999999999999998884 44332      334678899999999999999999998765   8999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.......
T Consensus       100 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~------~givHrDlkp~NIll~~~---g~vkL~DFG~a~~~~~~~~  170 (384)
T 4fr4_A          100 GDLRYHLQQNVHFKEETVKLFICELVMALDYLQN------QRIIHRDMKPDNILLDEH---GHVHITDFNIAAMLPRETQ  170 (384)
T ss_dssp             EEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECCTTCC
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCcHHHeEECCC---CCEEEeccceeeeccCCCc
Confidence            777665                    67888888      999999999999999885   8999999999998776666


Q ss_pred             ccccccCCCCcch------------------HHHHHHHHHhhCCCCCCC---CChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         138 IRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       138 ~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~---~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ....+||+.|+||                  |+||++|+|++|..||.+   ....+....+......+|.    .+|++
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~----~~s~~  246 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPS----AWSQE  246 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCT----TSCHH
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCC----cCCHH
Confidence            7788999999999                  999999999999999974   3455666777777666664    58999


Q ss_pred             HHHHHHHhcccCCCCCCC-HHHHhcCccccCCccccc
Q psy6046         197 AKDFIAKILIKNPMERMT-AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt-~~e~l~hp~~~~~~~~~~  232 (379)
                      +.+||.+||..||.+||+ ++++++||||.+..|...
T Consensus       247 ~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~~w~~~  283 (384)
T 4fr4_A          247 MVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDINWDAV  283 (384)
T ss_dssp             HHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHHHHhcCCHhHhcccHHHHHcChhhhcCCHHHH
Confidence            999999999999999998 999999999999887654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=6.5e-41  Score=326.41  Aligned_cols=213  Identities=23%  Similarity=0.311  Sum_probs=182.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..+||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|++|||  
T Consensus        74 ~~~LG~G~fG~V~~~~~~~~~~~~Ai-K~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~  152 (410)
T 3v8s_A           74 VKVIGRGAFGEVQLVRHKSTRKVYAM-KLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMP  152 (410)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEcCCCEEEEEEEECCCCcEEEE-EEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence            34899999999999999999998884 54432      334568999999999999999999998765   8999999  


Q ss_pred             CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          77 RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      +|+|+..                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+...... 
T Consensus       153 gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~------~givHrDLKp~NILl~~~---g~ikL~DFG~a~~~~~~~~  223 (410)
T 3v8s_A          153 GGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHS------MGFIHRDVKPDNMLLDKS---GHLKLADFGTCMKMNKEGM  223 (410)
T ss_dssp             TEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECCTTSE
T ss_pred             CCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeccCCHHHeeECCC---CCEEEeccceeEeeccCCc
Confidence            7888766                   67888888      999999999999999885   899999999998765443 


Q ss_pred             -cccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccccCCC
Q psy6046         137 -EIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELFEDIS  194 (379)
Q Consensus       137 -~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~s  194 (379)
                       ...+.+||+.|+||                   |+||++|+|++|++||.+.+..+.+.+|..+.  +.+|.  +..+|
T Consensus       224 ~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~--~~~~s  301 (410)
T 3v8s_A          224 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPD--DNDIS  301 (410)
T ss_dssp             EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCT--TCCCC
T ss_pred             ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCC--ccccc
Confidence             23467899999999                   99999999999999999999999998887653  34443  34689


Q ss_pred             HHHHHHHHHhcccCCCC--CCCHHHHhcCccccCCccccc
Q psy6046         195 PEAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      +++++||.+||..+|.+  ||+++|+++||||++..|...
T Consensus       302 ~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~~w~~~  341 (410)
T 3v8s_A          302 KEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWE  341 (410)
T ss_dssp             HHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCSSCCST
T ss_pred             HHHHHHHHHHccChhhhCCCCCHHHHhcCccccCCCHHHH
Confidence            99999999999999988  999999999999999876543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-40  Score=311.82  Aligned_cols=211  Identities=21%  Similarity=0.354  Sum_probs=184.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ...+||+|+||.||+|+++.+|+.||+ |....      ...+.+.+|+.+++.++||||+++++++.+   +|++||| 
T Consensus        10 ~~~~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~   88 (318)
T 1fot_A           10 ILRTLGTGSFGRVHLIRSRHNGRYYAM-KVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYI   88 (318)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEE-EEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCC
Confidence            345899999999999999999998884 54432      334668899999999999999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... 
T Consensus        89 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---g~~kL~Dfg~a~~~~~-  158 (318)
T 1fot_A           89 EGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHS------KDIIYRDLKPENILLDKN---GHIKITDFGFAKYVPD-  158 (318)
T ss_dssp             CSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEECTT---SCEEECCCSSCEECSS-
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCChheEEEcCC---CCEEEeecCcceecCC-
Confidence             6787766                    56788887      999999999999999875   8999999999987543 


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+..+...+|.    .+++++.+|
T Consensus       159 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~l  233 (318)
T 1fot_A          159 -VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP----FFNEDVKDL  233 (318)
T ss_dssp             -CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT----TSCHHHHHH
T ss_pred             -ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHHHHH
Confidence             34567899999999               9999999999999999999999999999988877765    589999999


Q ss_pred             HHHhcccCCCCCC-----CHHHHhcCccccCCcccccc
Q psy6046         201 IAKILIKNPMERM-----TAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       201 i~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~~  233 (379)
                      |.+||..||++||     +++++++||||++..|....
T Consensus       234 i~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~~  271 (318)
T 1fot_A          234 LSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLL  271 (318)
T ss_dssp             HHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHH
T ss_pred             HHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHHHHH
Confidence            9999999999999     99999999999998876543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=321.58  Aligned_cols=212  Identities=30%  Similarity=0.475  Sum_probs=181.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ++||+|+||.||+|.+..+|+.||+ |....   ...+.+.+|+.+|+.++||||+++++++.+   +|++|||  +|+|
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vav-K~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAA-KIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEE-EEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEE-EEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            4799999999999999999998884 54433   345678999999999999999999998765   7999999  6677


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      .+.                     .|+.|||+      +||+||||||+|||+..+. .+.+||+|||+++.........
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~~-~~~~kl~DFG~a~~~~~~~~~~  246 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQ------MYILHLDLKPENILCVNRD-AKQIKIIDFGLARRYKPREKLK  246 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEEEETT-TTEEEECCCSSCEECCTTCBCC
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccccCCHHHEEEecCC-CCcEEEEeCCCceecCCccccc
Confidence            554                     67888888      9999999999999996431 3789999999999876666666


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+||+.|+||               |+||++|+|++|..||.+.+..+.+..+......++...+..+++++.+||.+|
T Consensus       247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  326 (373)
T 2x4f_A          247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKL  326 (373)
T ss_dssp             CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTT
T ss_pred             cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHH
Confidence            77899999999               999999999999999999999999999999888888777788999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||+.|+|+||||.+..
T Consensus       327 L~~dp~~Rps~~e~l~hp~~~~~~  350 (373)
T 2x4f_A          327 LIKEKSWRISASEALKHPWLSDHK  350 (373)
T ss_dssp             SCSSGGGSCCHHHHHHSHHHHCHH
T ss_pred             cCCChhhCCCHHHHhcCcCcCCCc
Confidence            999999999999999999997654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.3e-40  Score=316.29  Aligned_cols=214  Identities=25%  Similarity=0.410  Sum_probs=165.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~   83 (379)
                      +.||+|+||.||+|++..+++.||++........+.+.+|+.+++.++||||+++++++.+   .|+++||  +|+|.+.
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~  138 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDR  138 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHH
Confidence            4899999999999999999998885444444445678899999999999999999998765   7999999  6777665


Q ss_pred             --------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          84 --------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        84 --------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                                          .|+.|||+      +||+||||||+|||++..+.++.+||+|||+++...........+|
T Consensus       139 l~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  212 (349)
T 2w4o_A          139 IVEKGYYSERDAADAVKQILEAVAYLHE------NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCG  212 (349)
T ss_dssp             HTTCSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccC
Confidence                                67888888      9999999999999998644458999999999987665555566789


Q ss_pred             CCCCcch---------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhccc
Q psy6046         144 TPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIK  207 (379)
Q Consensus       144 t~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  207 (379)
                      |+.|+||               |+||++|+|++|..||.+.... ..+..+......++.+.+..+++++.+||.+||..
T Consensus       213 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~  292 (349)
T 2w4o_A          213 TPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVL  292 (349)
T ss_dssp             CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCS
T ss_pred             CCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccC
Confidence            9999999               9999999999999999876554 47777888777777777788999999999999999


Q ss_pred             CCCCCCCHHHHhcCccccCCc
Q psy6046         208 NPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       208 dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||++|||+.|+|+||||.+..
T Consensus       293 dP~~Rpt~~e~l~hp~~~~~~  313 (349)
T 2w4o_A          293 DPKKRLTTFQALQHPWVTGKA  313 (349)
T ss_dssp             SGGGSCCHHHHHHSTTTTSTT
T ss_pred             ChhhCcCHHHHhcCcccCCCc
Confidence            999999999999999998655

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.9e-40  Score=317.09  Aligned_cols=212  Identities=22%  Similarity=0.330  Sum_probs=181.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +.||+|+||.||+|+++.+|+.||+ |+...        ...+.+.+|+.+++.++||||+++++++.+   +|++||| 
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~  108 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAV-KIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFM  108 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEE-EEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCC
Confidence            4899999999999999999999884 54432        134678999999999999999999998765   8999999 


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       +|+|...                        .|+.|||+      +||+||||||+|||++.++....+||+|||++..
T Consensus       109 ~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          109 DGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD------NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             SSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             CCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence             6777543                        57888888      9999999999999998764446699999999988


Q ss_pred             eccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         132 ILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       132 ~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..... .....+||+.|+||               |+||++|+|++|..||.+. ..+....+..+...++...+..+|+
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~i~~~~~~~~~~~~~~~s~  261 (351)
T 3c0i_A          183 LGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-KERLFEGIIKGKYKMNPRQWSHISE  261 (351)
T ss_dssp             CCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-HHHHHHHHHHTCCCCCHHHHTTSCH
T ss_pred             ecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHcCCCCCCccccccCCH
Confidence            75543 24567899999999               9999999999999999875 4567778888888887777788999


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++++||.+||..||++|||+.++|+||||+...
T Consensus       262 ~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~~  294 (351)
T 3c0i_A          262 SAKDLVRRMLMLDPAERITVYEALNHPWLKERD  294 (351)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTHH
T ss_pred             HHHHHHHHHCCCChhHCcCHHHHhcChhhcCCc
Confidence            999999999999999999999999999998654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-40  Score=320.44  Aligned_cols=212  Identities=26%  Similarity=0.446  Sum_probs=186.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||.||+|.+..+|+.+|+ |....   .+...+.+|+.+|+.++||||+++++++.+   +|++|||  +|+|
T Consensus        57 ~~LG~G~~g~Vy~~~~~~~~~~~a~-K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L  135 (387)
T 1kob_A           57 EELGSGAFGVVHRCVEKATGRVFVA-KFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL  135 (387)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEecCCCEEEEEEEECCCCCEEEE-EEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcH
Confidence            4799999999999999999998885 54433   234568999999999999999999998765   8999999  6777


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ++.                     .|+.|||+      +||+||||||+|||++.+. .+.+||+|||+++.........
T Consensus       136 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givHrDlkp~NIll~~~~-~~~vkL~DFG~a~~~~~~~~~~  208 (387)
T 1kob_A          136 FDRIAAEDYKMSEAEVINYMRQACEGLKHMHE------HSIVHLDIKPENIMCETKK-ASSVKIIDFGLATKLNPDEIVK  208 (387)
T ss_dssp             HHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSTT-CCCEEECCCTTCEECCTTSCEE
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeecccchHHeEEecCC-CCceEEEecccceecCCCccee
Confidence            665                     67888888      9999999999999997532 3689999999999876665566


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+||+.|+||               |+||++|+|++|..||.+.+..+.+..+......++...+..+|+++++||.+|
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  288 (387)
T 1kob_A          209 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNL  288 (387)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTT
T ss_pred             eeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHH
Confidence            67899999999               999999999999999999999999999999888888777788999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||+.|+|+||||++..
T Consensus       289 L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          289 LQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             SCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             cCCChhHCcCHHHHhhCccccCCc
Confidence            999999999999999999998754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-40  Score=328.08  Aligned_cols=218  Identities=22%  Similarity=0.255  Sum_probs=158.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeec--------CcceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLD--------PEPLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~--------~~~~~v~e   75 (379)
                      .++||+|+||.||+|+++.+|+.||++++...    .....+.+|+.+|+.++||||+++++++        ..+|+++|
T Consensus        58 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e  137 (458)
T 3rp9_A           58 RHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLE  137 (458)
T ss_dssp             CCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEC
T ss_pred             eeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEe
Confidence            35899999999999999999999996555432    2345688999999999999999999987        23799999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....
T Consensus       138 ~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~iiHrDlKp~NILl~~~---~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          138 IADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHS------AGILHRDLKPANCLVNQD---CSVKVCDFGLARTVDY  208 (458)
T ss_dssp             CCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---CCEEECCCTTCBCTTS
T ss_pred             ccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHh------CCcCCCCCChhhEEECCC---CCEeecccccchhccC
Confidence            9 6666555                    67888888      999999999999999985   8999999999986532


Q ss_pred             C----------------------------ccccccccCCCCcch----------------HHHHHHHHHhh---------
Q psy6046         135 G----------------------------IEIRELLGTPDYVGK----------------SLGVTAYVLLT---------  161 (379)
Q Consensus       135 ~----------------------------~~~~~~~gt~~y~aP----------------SlGvil~~llt---------  161 (379)
                      .                            ......+||++|+||                |+||++|+|++         
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~  288 (458)
T 3rp9_A          209 PENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYH  288 (458)
T ss_dssp             CTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSG
T ss_pred             ccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccccccc
Confidence            1                            123456899999999                99999999999         


Q ss_pred             --CCCCCCCCCh--------------------HHHHHHHHh--CC-------------------------CCCCcccccC
Q psy6046         162 --GFSPFGGETD--------------------SETFRNISK--AQ-------------------------LDFPDELFED  192 (379)
Q Consensus       162 --g~~Pf~~~~~--------------------~~~~~~i~~--~~-------------------------~~~~~~~~~~  192 (379)
                        |++||.+.+.                    .+.+..|..  +.                         .......++.
T Consensus       289 ~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (458)
T 3rp9_A          289 ADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPA  368 (458)
T ss_dssp             GGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTT
T ss_pred             ccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCC
Confidence              7888876542                    122222211  00                         0001223456


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                      +++++.+||.+||..||.+|||++|+|+||||++..+...+.
T Consensus       369 ~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~~e~  410 (458)
T 3rp9_A          369 SSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAEVET  410 (458)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGGGCC
T ss_pred             CCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCccCC
Confidence            799999999999999999999999999999999988766544

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.2e-40  Score=304.29  Aligned_cols=215  Identities=26%  Similarity=0.432  Sum_probs=189.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||.||+|.+..++..+|+++....  ...+.+.+|+.+++.++||||+++++++.+   .|+++||  +|+|
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   93 (277)
T 3f3z_A           14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGEL   93 (277)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred             eeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcH
Confidence            34899999999999999999998886554432  445679999999999999999999998765   7999999  6677


Q ss_pred             hHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          81 YQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        81 ~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      .+.                    .|+.|||+      +||+||||||+||++..++.++.+||+|||++...........
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~  167 (277)
T 3f3z_A           94 FERVVHKRVFRESDAARIMKDVLSAVAYCHK------LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRT  167 (277)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhc
Confidence            665                    67888888      9999999999999995444458999999999988776666677


Q ss_pred             cccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         141 LLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       141 ~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      ..||+.|+||              |+|+++|+|++|..||.+.+..+....+..+...++...+..+++.+.+||.+||.
T Consensus       168 ~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  247 (277)
T 3f3z_A          168 KVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLT  247 (277)
T ss_dssp             CCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTC
T ss_pred             cCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHcc
Confidence            8899999999              99999999999999999999999999999998888887777899999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||+.++|+||||++..
T Consensus       248 ~dp~~R~s~~~~l~h~~~~~~~  269 (277)
T 3f3z_A          248 KSPKQRITSLQALEHEWFEKQL  269 (277)
T ss_dssp             SSTTTSCCHHHHTTSHHHHHHH
T ss_pred             CChhhCcCHHHHhcCHHHhccc
Confidence            9999999999999999997654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-41  Score=320.68  Aligned_cols=210  Identities=23%  Similarity=0.393  Sum_probs=179.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus        13 i~~~lG~G~~g~V~~a~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~   91 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYKTQQKVAL-KFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA   91 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEE-EEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC
Confidence            445899999999999999999999885 44332      224578999999999999999999998765   7999999 


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|++++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.....+.
T Consensus        92 ~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givH~Dlkp~NIll~~~---~~~kl~DFG~s~~~~~~~  162 (336)
T 3h4j_B           92 GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHR------HKIVHRDLKPENLLLDDN---LNVKIADFGLSNIMTDGN  162 (336)
T ss_dssp             CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------HTCCCCCCSTTTEEECTT---CCEEECCSSCTBTTTTSB
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEecCCchhhEEEcCC---CCEEEEEeccceeccCCc
Confidence            7887776                    67888888      999999999999999975   899999999998877666


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      .....+||+.|+||                |+||++|+|++|..||.+....+....+..+...+|.    .+|+++.+|
T Consensus       163 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~l  238 (336)
T 3h4j_B          163 FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPD----FLSPGAQSL  238 (336)
T ss_dssp             TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCT----TSCHHHHHH
T ss_pred             ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcc----cCCHHHHHH
Confidence            67788999999999                9999999999999999887666555555555554443    589999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      |.+||..||.+|||++|+++||||+.....
T Consensus       239 i~~~L~~dP~~Rpt~~eil~hp~~~~~~~~  268 (336)
T 3h4j_B          239 IRRMIVADPMQRITIQEIRRDPWFNVNLPD  268 (336)
T ss_dssp             HHTTSCSSGGGSCCHHHHTTCHHHHTTCCG
T ss_pred             HHHHcCCChhHCcCHHHHHhChhhccCCcc
Confidence            999999999999999999999999865433

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.3e-40  Score=317.36  Aligned_cols=212  Identities=20%  Similarity=0.289  Sum_probs=183.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ...+||+|+||.||+|+++.+|+.||+ |....      .....+..|..+++.+ +||||+++++++.+   +|++|||
T Consensus        21 ~~~~lG~G~fg~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~   99 (345)
T 1xjd_A           21 LHKMLGKGSFGKVFLAEFKKTNQFFAI-KALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEY   99 (345)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEE-EEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeC
Confidence            345899999999999999999998884 54432      3345688999999877 89999999998765   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                        +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....
T Consensus       100 ~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---g~vkL~DFG~a~~~~~  170 (345)
T 1xjd_A          100 LNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS------KGIVYRDLKLDNILLDKD---GHIKIADFGMCKENML  170 (345)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCCCC
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCeEeCCCChhhEEECCC---CCEEEeEChhhhhccc
Confidence              7788766                    67888888      999999999999999876   8999999999986432


Q ss_pred             -CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         135 -GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       135 -~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                       .......+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+..+...+|.    .+|++++
T Consensus       171 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~  246 (345)
T 1xjd_A          171 GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR----WLEKEAK  246 (345)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHH
T ss_pred             CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCc----ccCHHHH
Confidence             3345678899999999               9999999999999999999999999999988777664    4899999


Q ss_pred             HHHHHhcccCCCCCCCHH-HHhcCccccCCccccc
Q psy6046         199 DFIAKILIKNPMERMTAK-EALKHPWLMNKKQIMT  232 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~-e~l~hp~~~~~~~~~~  232 (379)
                      +||.+||..||.+||++. ++++||||++..|...
T Consensus       247 ~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~w~~l  281 (345)
T 1xjd_A          247 DLLVKLFVREPEKRLGVRGDIRQHPLFREINWEEL  281 (345)
T ss_dssp             HHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHHHH
T ss_pred             HHHHHHhcCCHhHcCCChHHHHcCccccCCCHHHH
Confidence            999999999999999998 9999999999887654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2.7e-40  Score=320.50  Aligned_cols=211  Identities=20%  Similarity=0.237  Sum_probs=177.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+||+|+||+||+|+++.+++.||+ |+...      .....+.+|..+++.+ +||||+++++++.+   +|++|||  
T Consensus        58 ~~LG~G~fG~V~~~~~~~~~~~~Av-K~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~  136 (396)
T 4dc2_A           58 RVIGRGSYAKVLLVRLKKTDRIYAM-RVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN  136 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEE-EEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEE-EEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCC
Confidence            4899999999999999999988884 44332      2345688999999887 89999999998765   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee-ccC
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI-LDG  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~-~~~  135 (379)
                      +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.. ...
T Consensus       137 gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~------~givHrDLKp~NILl~~~---g~ikL~DFGla~~~~~~~  207 (396)
T 4dc2_A          137 GGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHE------RGIIYRDLKLDNVLLDSE---GHIKLTDYGMCKEGLRPG  207 (396)
T ss_dssp             TCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCCCCTT
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCEEeccCCHHHEEECCC---CCEEEeecceeeecccCC
Confidence            7788765                    67888888      999999999999999986   89999999999863 334


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC---------ChHHHHHHHHhCCCCCCccccc
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE---------TDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~---------~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ......+||+.|+||               |+||++|+|++|++||.+.         ........+......+|.    
T Consensus       208 ~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~----  283 (396)
T 4dc2_A          208 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR----  283 (396)
T ss_dssp             CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCT----
T ss_pred             CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCC----
Confidence            456678999999999               9999999999999999642         234466777888777765    


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCH------HHHhcCccccCCcccccc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTA------KEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~------~e~l~hp~~~~~~~~~~~  233 (379)
                      .+|+++++||.+||..||.+||++      +|+++||||++.+|....
T Consensus       284 ~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~  331 (396)
T 4dc2_A          284 SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMME  331 (396)
T ss_dssp             TSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHH
T ss_pred             cCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHH
Confidence            589999999999999999999985      899999999998877653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=5.5e-40  Score=313.77  Aligned_cols=208  Identities=19%  Similarity=0.306  Sum_probs=183.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|+++.+|+.||+ |....      ...+.+.+|+.+|+.++||||+++++++.+   +|++|||  +
T Consensus        47 ~~lG~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g  125 (350)
T 1rdq_E           47 KTLGTGSFGRVMLVKHKESGNHYAM-KILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG  125 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEE-EEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            4899999999999999999998884 54432      334678899999999999999999998765   7999999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....  
T Consensus       126 g~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---g~~kL~DFg~a~~~~~~--  194 (350)
T 1rdq_E          126 GEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHS------LDLIYRDLKPENLLIDQQ---GYIQVTDFGFAKRVKGR--  194 (350)
T ss_dssp             CBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECSSC--
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccccCccceEEECCC---CCEEEcccccceeccCC--
Confidence            788766                    67888888      999999999999999875   89999999999876433  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+..+...+|.    .+|+++.+||.
T Consensus       195 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~li~  270 (350)
T 1rdq_E          195 TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS----HFSSDLKDLLR  270 (350)
T ss_dssp             BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TCCHHHHHHHH
T ss_pred             cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCC----CCCHHHHHHHH
Confidence            3567899999999               9999999999999999999999999999998877765    58999999999


Q ss_pred             HhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         203 KILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       203 ~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      +||..||.+||+     ++++++||||....|...
T Consensus       271 ~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~  305 (350)
T 1rdq_E          271 NLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI  305 (350)
T ss_dssp             HHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHH
T ss_pred             HHhhcCHHhccCCccCCHHHHHhCcCcCCCCHHHH
Confidence            999999999998     999999999999887644

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.1e-39  Score=301.52  Aligned_cols=219  Identities=25%  Similarity=0.399  Sum_probs=189.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|.+..+|+.||++.....    .....+.+|+.+++.++||||+++++++.+   .|+++||  +|
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   90 (284)
T 3kk8_A           11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG   90 (284)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCC
Confidence            45899999999999999999999885333222    223568899999999999999999998765   7899999  66


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ++.+.                    .|+.|||+      +||+||||||+||+++.++..+.+||+|||++.........
T Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (284)
T 3kk8_A           91 ELFEDIVAREFYSEADASHCIQQILESIAYCHS------NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW  164 (284)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc
Confidence            77554                    67888888      99999999999999987654567999999999887666556


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ....||+.|+||               |+|+++|+|++|..||.+.+..+....+..+...++...+..+++++.+||.+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (284)
T 3kk8_A          165 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDS  244 (284)
T ss_dssp             CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHH
Confidence            677899999999               99999999999999999999999999999998888887778899999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                      ||..||.+|||++|+++||||.+..+...
T Consensus       245 ~l~~dp~~Rps~~~~l~h~~~~~~~~~~~  273 (284)
T 3kk8_A          245 MLTVNPKKRITADQALKVPWICNRERVAS  273 (284)
T ss_dssp             HSCSSTTTSCCHHHHTTSHHHHSCCCGGG
T ss_pred             HcccChhhCCCHHHHhcCccccCChhHHh
Confidence            99999999999999999999987765443

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.1e-40  Score=311.65  Aligned_cols=212  Identities=23%  Similarity=0.349  Sum_probs=180.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.++.+|+.|| +|...... ....+|++++..+ +||||+++++++.+   .|++|||  +|+|++
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~~a-vK~~~~~~-~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~  105 (342)
T 2qr7_A           28 EDIGVGSYSVCKRCIHKATNMEFA-VKIIDKSK-RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLD  105 (342)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEE-EEEEETTT-CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEE-EEEEEccc-CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHH
Confidence            489999999999999999998888 55554322 2356799998888 79999999998765   7999999  778877


Q ss_pred             H--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceeeccC-ccccc
Q psy6046          83 A--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVILDG-IEIRE  140 (379)
Q Consensus        83 ~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~~~~-~~~~~  140 (379)
                      .                    .|+.|||+      +||+||||||+|||+.+.+ ..+.+||+|||+++..... .....
T Consensus       106 ~i~~~~~~~~~~~~~~~~qi~~al~~lH~------~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~  179 (342)
T 2qr7_A          106 KILRQKFFSEREASAVLFTITKTVEYLHA------QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMT  179 (342)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceec
Confidence            5                    67888888      9999999999999986542 1246999999999876543 24556


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhhCCCCCCC---CChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG---ETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~---~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      .+||+.|+||               |+||++|+|++|.+||.+   .+..+++..+..+.+.++...|..+|+++++||.
T Consensus       180 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  259 (342)
T 2qr7_A          180 PCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVS  259 (342)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHH
T ss_pred             cCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHH
Confidence            7899999999               999999999999999975   4667888999999988888888899999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||..||++|||+.++++||||.+..
T Consensus       260 ~~L~~dP~~R~t~~~il~hp~~~~~~  285 (342)
T 2qr7_A          260 KMLHVDPHQRLTAALVLRHPWIVHWD  285 (342)
T ss_dssp             HHTCSSTTTSCCHHHHTTSHHHHTGG
T ss_pred             HHCCCChhHCcCHHHHhcCCeecCcc
Confidence            99999999999999999999997643

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.9e-40  Score=327.53  Aligned_cols=209  Identities=23%  Similarity=0.335  Sum_probs=183.9

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      -..+.||+|+||.||+|++..+|+.||+ |+...      .....+.+|+.+|+.++||||+++++++.+   +|+++||
T Consensus        19 ~l~~~LG~G~fg~V~~a~~~~~g~~vAv-K~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~   97 (476)
T 2y94_A           19 ILGDTLGVGTFGKVKVGKHELTGHKVAV-KILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEY   97 (476)
T ss_dssp             EEEEEEECCSSSCEEEEEETTTCCEEEE-EEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEE-EEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            4456899999999999999999999884 54432      224568999999999999999999998764   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                        +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....
T Consensus        98 ~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givHrDLkp~NIll~~~---~~vkL~DFG~a~~~~~  168 (476)
T 2y94_A           98 VSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHR------HMVVHRDLKPENVLLDAH---MNAKIADFGLSNMMSD  168 (476)
T ss_dssp             CSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHT------TTEECSCCSGGGEEECTT---CCEEECCCSSCEECCT
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCCcccccHHHEEEecC---CCeEEEeccchhhccc
Confidence              7788776                    67788887      999999999999999875   8999999999998776


Q ss_pred             CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         135 GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .......+||+.|+||                |+||++|+|++|..||.+.+.......+..+.+..|.    .+++++.
T Consensus       169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~  244 (476)
T 2y94_A          169 GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQ----YLNPSVI  244 (476)
T ss_dssp             TCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCT----TCCHHHH
T ss_pred             cccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCc----cCCHHHH
Confidence            6667778999999999                9999999999999999999988999999888776654    4899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||+.++++||||+...
T Consensus       245 ~Li~~~L~~dP~~Rpt~~eil~hp~~~~~~  274 (476)
T 2y94_A          245 SLLKHMLQVDPMKRATIKDIREHEWFKQDL  274 (476)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHTCHHHHTTC
T ss_pred             HHHHHHcCCCchhCcCHHHHHhCHHhhhcC
Confidence            999999999999999999999999998654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.8e-40  Score=308.56  Aligned_cols=211  Identities=13%  Similarity=0.068  Sum_probs=156.3

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHH--HHHHHHhCCCCCcceeeeecCc-------ceEEe
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVD--EEQLLKLIKVEPIEKYYSLDPE-------PLLGL   74 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~--E~~il~~l~hpnIv~~~~~~~~-------~~~v~   74 (379)
                      |..+++.||+|+||+||+|++  +|+.|| +|..+........+  |+..+..++|||||++++++.+       +|+||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~--~g~~VA-vK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW--RGEEVA-VKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE--TTEEEE-EEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE--CCEEEE-EEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            345677999999999999985  687877 56665554444444  5555678899999999998753       69999


Q ss_pred             eC--CchhhHH-------------------HHHHHHhcc--cCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          75 NP--RPPVYQA-------------------SATTKAGSV--LFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        75 e~--~g~l~~~-------------------~al~~lh~~--~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ||  +|+|++.                   .|+.|||+-  ..+|..+|+||||||+|||++.+   +.+||+|||+|+.
T Consensus        81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~---~~~Ki~DFGla~~  157 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN---GTCCIADLGLAVR  157 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTT---SCEEECCCTTCEE
T ss_pred             cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCC---CCEEEEeCCCCcc
Confidence            99  8898887                   679999972  22445699999999999999985   8999999999988


Q ss_pred             eccCcc-----ccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCC---------------C
Q psy6046         132 ILDGIE-----IRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGE---------------T  170 (379)
Q Consensus       132 ~~~~~~-----~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~---------------~  170 (379)
                      ......     ....+||+.||||                     |+||++|||+||.+||...               .
T Consensus       158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~  237 (303)
T 3hmm_A          158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence            754332     2346899999999                     9999999999998766321               2


Q ss_pred             hHHHHHHHHhCCCC--CCcccc-cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         171 DSETFRNISKAQLD--FPDELF-EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       171 ~~~~~~~i~~~~~~--~~~~~~-~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+....+......  +|.... ...++.+.+|+.+||..||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~  290 (303)
T 3hmm_A          238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            23444444444332  222111 123457889999999999999999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=4.3e-40  Score=314.78  Aligned_cols=212  Identities=21%  Similarity=0.294  Sum_probs=183.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+||+|+||.||+|+++.+|+.|| +|+...      ...+.+.+|..++..+ +||+|+++++++.+   +|++||| 
T Consensus        25 ~~~lG~G~fg~V~~~~~~~~~~~~A-iK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~  103 (353)
T 2i0e_A           25 LMVLGKGSFGKVMLSERKGTDELYA-VKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV  103 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEE-EEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEE-EEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCC
Confidence            3489999999999999999998888 454432      3346688999999988 79999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... .
T Consensus       104 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~givHrDlkp~NIll~~~---g~vkL~DFG~a~~~~~~  174 (353)
T 2i0e_A          104 NGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQS------KGIIYRDLKLDNVMLDSE---GHIKIADFGMCKENIWD  174 (353)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCCCCT
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCEEeccCCHHHEEEcCC---CcEEEEeCCcccccccC
Confidence             7788766                    67888888      999999999999999885   899999999998643 3


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|++||.+.+..+++..+......+|.    .+|+++.+
T Consensus       175 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~  250 (353)
T 2i0e_A          175 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK----SMSKEAVA  250 (353)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHH
T ss_pred             CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHHHH
Confidence            3345678899999999               9999999999999999999999999999998887775    58999999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCccccCCcccccc
Q psy6046         200 FIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       200 li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~~  233 (379)
                      ||.+||..||.+||     +++++++||||+...|....
T Consensus       251 li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~  289 (353)
T 2i0e_A          251 ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLE  289 (353)
T ss_dssp             HHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHH
T ss_pred             HHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHHHHH
Confidence            99999999999999     47999999999998876653

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.6e-39  Score=303.52  Aligned_cols=210  Identities=20%  Similarity=0.206  Sum_probs=175.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc--cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN--VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|.+..+|+.||+++...  ....+.+.+|+.+++.++||||+++++++.+   +|++|||  +|+|.
T Consensus        26 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (297)
T 3fxz_A           26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  105 (297)
T ss_dssp             EEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHH
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHH
Confidence            489999999999999999999998543322  2335668999999999999999999998654   8999999  77777


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      +.                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....... .....
T Consensus       106 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~Dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~~~~  176 (297)
T 3fxz_A          106 DVVTETCMDEGQIAAVCRECLQALEFLHS------NQVIHRDIKSDNILLGMD---GSVKLTDFGFCAQITPEQSKRSTM  176 (297)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECCSTTCCBCCC
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHh------CCceeCCCCHHHEEECCC---CCEEEeeCCCceecCCcccccCCc
Confidence            65                   67888888      999999999999999875   899999999998765433 34556


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +||+.|+||               |+||++|+|++|..||.+.+.......+........ .....+++.+.+||.+||.
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~  255 (297)
T 3fxz_A          177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPEL-QNPEKLSAIFRDFLNRCLE  255 (297)
T ss_dssp             CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCC-SCGGGSCHHHHHHHHHHSC
T ss_pred             cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC-CCccccCHHHHHHHHHHcc
Confidence            899999999               999999999999999998887776666654432211 1234689999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||++|+++||||+...
T Consensus       256 ~dp~~Rps~~ell~h~~~~~~~  277 (297)
T 3fxz_A          256 MDVEKRGSAKELLQHQFLKIAK  277 (297)
T ss_dssp             SSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CChhHCcCHHHHhhChhhcccC
Confidence            9999999999999999998654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.5e-40  Score=305.70  Aligned_cols=207  Identities=23%  Similarity=0.334  Sum_probs=172.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------------------------cchHHHHHHHHHHhCCC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------------------------QGVVIVDEEQLLKLIKV   57 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------------------------~~~~~~~E~~il~~l~h   57 (379)
                      ..+.||+|+||.||+|++..+|+.||+ |.....                             ..+.+.+|+.+++.++|
T Consensus        17 ~~~~lG~G~~g~Vy~a~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   95 (298)
T 2zv2_A           17 LKDEIGKGSYGVVKLAYNENDNTYYAM-KVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDH   95 (298)
T ss_dssp             EEEEEEC--CCEEEEEEETTTTEEEEE-EEEECC-------------------------------CHHHHHHHHHHTCCC
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEE-EEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCC
Confidence            345899999999999999999988884 443321                             13568999999999999


Q ss_pred             CCcceeeeecCc-----ceEEeeC--CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEE
Q psy6046          58 EPIEKYYSLDPE-----PLLGLNP--RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLV  111 (379)
Q Consensus        58 pnIv~~~~~~~~-----~~~v~e~--~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nil  111 (379)
                      |||+++++++.+     +|++|||  +|.+.+.                   .|+.|||+      +||+||||||+||+
T Consensus        96 ~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~Nil  169 (298)
T 2zv2_A           96 PNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHY------QKIIHRDIKPSNLL  169 (298)
T ss_dssp             TTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEE
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHEE
Confidence            999999998653     7999999  4554432                   67888888      99999999999999


Q ss_pred             EeecCCCCcEEEeecccceeeccCc-cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChH
Q psy6046         112 MMGDFPNCDIKVCDFEISRVILDGI-EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDS  172 (379)
Q Consensus       112 l~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~  172 (379)
                      ++.+   +.+||+|||+++...... .....+||+.|+||                  |+||++|+|++|..||.+....
T Consensus       170 ~~~~---~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~  246 (298)
T 2zv2_A          170 VGED---GHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIM  246 (298)
T ss_dssp             ECTT---SCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ECCC---CCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHH
Confidence            9875   899999999998765433 34556899999999                  9999999999999999998888


Q ss_pred             HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         173 ETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      .....+......++..  ..+++++.+||.+||..||.+|||+.|+++||||+
T Consensus       247 ~~~~~~~~~~~~~~~~--~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          247 CLHSKIKSQALEFPDQ--PDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             HHHHHHHHCCCCCCSS--SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             HHHHHHhcccCCCCCc--cccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence            8888888777666542  47899999999999999999999999999999995

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=9.1e-40  Score=311.69  Aligned_cols=211  Identities=21%  Similarity=0.248  Sum_probs=177.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+++.+ +||||+++++++.+   +|++||| 
T Consensus        14 ~~~lG~G~fg~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~   92 (345)
T 3a8x_A           14 LRVIGRGSYAKVLLVRLKKTDRIYAM-KVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV   92 (345)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEE-EEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEE-EEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCC
Confidence            34899999999999999999998885 44432      1234588999999988 89999999998765   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... .
T Consensus        93 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---g~~kL~DFG~a~~~~~~  163 (345)
T 3a8x_A           93 NGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHE------RGIIYRDLKLDNVLLDSE---GHIKLTDYGMCKEGLRP  163 (345)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCGGGCBCSCCT
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCHHHEEECCC---CCEEEEeccccccccCC
Confidence             7787765                    67888888      999999999999999875   899999999998643 3


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC---------CChHHHHHHHHhCCCCCCcccc
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG---------ETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~---------~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      .......+||+.|+||               |+||++|+|++|++||..         .........+......+|.   
T Consensus       164 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~---  240 (345)
T 3a8x_A          164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR---  240 (345)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCT---
T ss_pred             CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCC---
Confidence            3345667899999999               999999999999999975         3344566777777777664   


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCH------HHHhcCccccCCccccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTA------KEALKHPWLMNKKQIMT  232 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~------~e~l~hp~~~~~~~~~~  232 (379)
                       .+|+++.+||.+||..||.+||++      +++++||||++..|...
T Consensus       241 -~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~  287 (345)
T 3a8x_A          241 -SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMM  287 (345)
T ss_dssp             -TSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHH
T ss_pred             -CCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHH
Confidence             589999999999999999999985      89999999999887654

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.7e-40  Score=320.55  Aligned_cols=211  Identities=24%  Similarity=0.346  Sum_probs=171.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHH-HhCCCCCcceeeeecCc-------ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLL-KLIKVEPIEKYYSLDPE-------PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il-~~l~hpnIv~~~~~~~~-------~~~v~e~--~g   78 (379)
                      .+||+|+||.||+|.+..+|+.||+ |....  ...+.+|+.++ +..+||||+++++++..       +|++|||  +|
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAi-K~~~~--~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg  144 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFAL-KMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  144 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEE-EEeCc--chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCC
Confidence            5899999999999999999998884 55432  35678899987 56689999999987643       7899999  67


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|++.                      .|+.|||+      +||+||||||+|||++..+.++.+||+|||+++......
T Consensus       145 ~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~  218 (400)
T 1nxk_A          145 ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN  218 (400)
T ss_dssp             EHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---
T ss_pred             cHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCcCcceEEEecCCCCccEEEEecccccccCCCC
Confidence            77665                      57888888      999999999999999985445899999999998776555


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH----HHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS----ETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .....+||+.|+||               |+||++|+|++|..||.+.+..    .....+..+.+.++...|..+|+++
T Consensus       219 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  298 (400)
T 1nxk_A          219 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEV  298 (400)
T ss_dssp             --------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHH
T ss_pred             ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHH
Confidence            56778899999999               9999999999999999875432    2556777788888877778899999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++||.+||..||.+|||+.|+++||||.+..
T Consensus       299 ~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~  329 (400)
T 1nxk_A          299 KMLIRNLLKTEPTQRMTITEFMNHPWIMQST  329 (400)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHHSHHHHTTT
T ss_pred             HHHHHHHCCCChhHCcCHHHHhcCccccCCC
Confidence            9999999999999999999999999997644

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.9e-39  Score=311.38  Aligned_cols=210  Identities=23%  Similarity=0.321  Sum_probs=164.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|++..+|+.||+++.... ...+.+.+|+.+++.++||||+++++++.+   +|+++||  +|+|..
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~  105 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYE  105 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHH
Confidence            4899999999999999999999885444332 234678999999999999999999998764   8999999  777776


Q ss_pred             H--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccc
Q psy6046          83 A--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL  142 (379)
Q Consensus        83 ~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~  142 (379)
                      .                    .|+.|||+      +||+||||||+|||++.+. .+.+||+|||+++...........+
T Consensus       106 ~l~~~~~~~~~~~~~i~~ql~~~L~~LH~------~~ivH~Dlkp~Nill~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~  178 (361)
T 3uc3_A          106 RICNAGRFSEDEARFFFQQLLSGVSYCHS------MQICHRDLKLENTLLDGSP-APRLKICDFGYSKSSVLHSQPKSTV  178 (361)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCSCCCCGGGEEECSSS-SCCEEECCCCCC-------------
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEcCCC-CceEEEeecCccccccccCCCCCCc
Confidence            5                    67888888      9999999999999998652 2459999999998655444556678


Q ss_pred             cCCCCcch----------------HHHHHHHHHhhCCCCCCCCC----hHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         143 GTPDYVGK----------------SLGVTAYVLLTGFSPFGGET----DSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       143 gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ||+.|+||                |+||++|+|++|++||.+.+    .......+......+|..  ..+|+++.+||.
T Consensus       179 gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~li~  256 (361)
T 3uc3_A          179 GTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDD--IRISPECCHLIS  256 (361)
T ss_dssp             --CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTT--SCCCHHHHHHHH
T ss_pred             CCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCc--CCCCHHHHHHHH
Confidence            99999999                99999999999999998643    345666666666666543  368999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCC
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      +||..||.+|||+.|+++||||...
T Consensus       257 ~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          257 RIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             HHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             HHccCChhHCcCHHHHHhCcchhcC
Confidence            9999999999999999999999654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.6e-39  Score=316.64  Aligned_cols=218  Identities=23%  Similarity=0.301  Sum_probs=167.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLN   75 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e   75 (379)
                      .++||+|+||.||+|+++.+|+.||+++....    .....+.+|+.+|+.++||||+++++++.        .+|+++|
T Consensus        31 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  110 (432)
T 3n9x_A           31 KHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLE  110 (432)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEE
T ss_pred             EEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEe
Confidence            45899999999999999999999986555432    23457899999999999999999999863        3799999


Q ss_pred             C-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      | +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....
T Consensus       111 ~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~------~givHrDlkp~NILl~~~---~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          111 IADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHE------SGIIHRDLKPANCLLNQD---CSVKVCDFGLARTINS  181 (432)
T ss_dssp             CCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEEC--
T ss_pred             cCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCCCCCCCCHHHeEECCC---CCEEEccCCCcccccc
Confidence            9 6666655                    67888888      999999999999999875   8999999999987643


Q ss_pred             Cc-----------------------cccccccCCCCcch----------------HHHHHHHHHhh-----------CCC
Q psy6046         135 GI-----------------------EIRELLGTPDYVGK----------------SLGVTAYVLLT-----------GFS  164 (379)
Q Consensus       135 ~~-----------------------~~~~~~gt~~y~aP----------------SlGvil~~llt-----------g~~  164 (379)
                      ..                       .....+||++|+||                |+||++|+|++           |.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p  261 (432)
T 3n9x_A          182 EKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFP  261 (432)
T ss_dssp             -----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCC
T ss_pred             cccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccc
Confidence            21                       23667899999999                99999999998           455


Q ss_pred             CCCCCCh-----------------HHHHHHH------------------------HhCCCCCC---cccccCCCHHHHHH
Q psy6046         165 PFGGETD-----------------SETFRNI------------------------SKAQLDFP---DELFEDISPEAKDF  200 (379)
Q Consensus       165 Pf~~~~~-----------------~~~~~~i------------------------~~~~~~~~---~~~~~~~s~~~~~l  200 (379)
                      +|.+.+.                 .+.+..+                        .......+   ...++.+++++.+|
T Consensus       262 ~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dL  341 (432)
T 3n9x_A          262 LFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINL  341 (432)
T ss_dssp             SCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHH
T ss_pred             cCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHH
Confidence            5555431                 1222222                        11111111   11235689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                      |.+||..||++|||++|+|+||||++..+....+
T Consensus       342 l~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~e~  375 (432)
T 3n9x_A          342 LESMLKFNPNKRITIDQALDHPYLKDVRKKKLEN  375 (432)
T ss_dssp             HHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTTC-
T ss_pred             HHHHhcCCcccCCCHHHHhcChhhhhccCcccCc
Confidence            9999999999999999999999999987765544

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2.2e-39  Score=300.40  Aligned_cols=212  Identities=23%  Similarity=0.318  Sum_probs=172.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .+.||+|+||.||+|.+..+|..+|+++....   ...+.+.+|+.+++.++||||+++++++.+   .|+++||  +|+
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~  106 (285)
T 3is5_A           27 KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGE  106 (285)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCB
T ss_pred             cceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCc
Confidence            35899999999999999999999885444332   234678999999999999999999998765   7999999  667


Q ss_pred             hhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          80 VYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        80 l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |.+.                        .|+.|||+      +||+||||||+||+++..+.++.+||+|||++......
T Consensus       107 L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~  180 (285)
T 3is5_A          107 LLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS------QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD  180 (285)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----
T ss_pred             HHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh------CCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCc
Confidence            6654                        57788888      99999999999999976555688999999999877665


Q ss_pred             ccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ......+||+.|+||              |+|+++|+|++|..||.+.+..+....+......++.. ...+++++.+||
T Consensus       181 ~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li  259 (285)
T 3is5_A          181 EHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVE-CRPLTPQAVDLL  259 (285)
T ss_dssp             ------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC---CCCCHHHHHHH
T ss_pred             ccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccc-cCcCCHHHHHHH
Confidence            556677899999999              99999999999999999998888888777665554432 234799999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccC
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      .+||..||.+|||+.|+|+||||++
T Consensus       260 ~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          260 KQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             HHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             HHHccCChhhCcCHHHHhcCHHhhc
Confidence            9999999999999999999999975

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.2e-39  Score=305.25  Aligned_cols=216  Identities=22%  Similarity=0.206  Sum_probs=166.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ..+.||+|+||.||+|.++.+|+.||++.....   .....+.+|+.+++.++||||+++++++.+   +|+++|| .|+
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~   88 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMDND   88 (317)
T ss_dssp             ----------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCCCB
T ss_pred             EeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecCCC
Confidence            345899999999999999999998885433222   234678999999999999999999999765   7999999 555


Q ss_pred             hhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          80 VYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        80 l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |.+.                          .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++...
T Consensus        89 L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~------~~ivH~Dlkp~NIl~~~~---~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           89 LKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE------NKILHRDLKPQNLLINKR---GQLKLGDFGLARAFG  159 (317)
T ss_dssp             HHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCSSCEETT
T ss_pred             HHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCChHHeEEcCC---CCEEECcCccceecC
Confidence            5443                          57788888      999999999999999885   899999999998764


Q ss_pred             cC-ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC----------
Q psy6046         134 DG-IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP----------  186 (379)
Q Consensus       134 ~~-~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~----------  186 (379)
                      .. ......+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+          
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          160 IPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             SCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred             CCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhh
Confidence            33 234556899999999                999999999999999999988877777644211100          


Q ss_pred             --------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         187 --------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       187 --------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                          ......+++++.+||.+||..||++|||+.|+|+||||++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  304 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHA  304 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC--
T ss_pred             hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccchh
Confidence                                011125789999999999999999999999999999999876543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=2.7e-39  Score=304.91  Aligned_cols=215  Identities=29%  Similarity=0.463  Sum_probs=185.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||+|+||.||+|++..+|+.||++......        ..+.+.+|+.+++.++||||+++++++.+   +|+++||
T Consensus        17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   96 (321)
T 2a2a_A           17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILEL   96 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             eeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEc
Confidence            348999999999999999999998853332221        24568999999999999999999998765   7999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeecccceeec
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~~~~  133 (379)
                        +|+|.+.                    .|+.|||+      +||+||||||+||+++.++. ...+||+|||++....
T Consensus        97 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~  170 (321)
T 2a2a_A           97 VSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHT------KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (321)
T ss_dssp             CCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence              6777665                    67888888      99999999999999987621 1279999999998876


Q ss_pred             cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .........||+.|+||               |+|+++|+|++|..||.+.+..+....+......++...+..+++.+.
T Consensus       171 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  250 (321)
T 2a2a_A          171 DGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAK  250 (321)
T ss_dssp             TTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHH
T ss_pred             ccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHH
Confidence            66556667899999999               999999999999999999999999999998888888777788999999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||+.|+++||||....
T Consensus       251 ~li~~~l~~dp~~Rps~~e~l~hp~~~~~~  280 (321)
T 2a2a_A          251 DFIRKLLVKETRKRLTIQEALRHPWITPVD  280 (321)
T ss_dssp             HHHHTTSCSSTTTSCCHHHHHHSTTTSCSS
T ss_pred             HHHHHHcCCChhhCcCHHHHhcCccccCCC
Confidence            999999999999999999999999998665

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.7e-40  Score=321.12  Aligned_cols=213  Identities=25%  Similarity=0.413  Sum_probs=172.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e   75 (379)
                      +.||+|+||.||+|.+..+++.||+ |.....           ....+.+|+.+|+.++||||+++++++..  +|++||
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~lv~e  219 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAI-RIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLE  219 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSEEEEEEE
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEE-EEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCceEEEEE
Confidence            4799999999999999999999885 443321           12358899999999999999999998654  899999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |  +|+|++.                    .|+.|||+      +||+||||||+|||++..+....+||+|||+++...
T Consensus       220 ~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~  293 (419)
T 3i6u_A          220 LMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHE------NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG  293 (419)
T ss_dssp             CCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCChHhEEEecCCCcceEEEeecccceecC
Confidence            9  7777665                    67888888      999999999999999875444679999999998876


Q ss_pred             cCccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCCCCcccccCCC
Q psy6046         134 DGIEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ........+||+.|+||                  |+||++|+|++|.+||.+... ......+..+...+++..+..++
T Consensus       294 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  373 (419)
T 3i6u_A          294 ETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVS  373 (419)
T ss_dssp             -----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSC
T ss_pred             CCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccC
Confidence            65556678899999999                  999999999999999976543 34566777788887777788899


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+.+||.+||..||.+|||++|+|+||||++..
T Consensus       374 ~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          374 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence            9999999999999999999999999999997543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-39  Score=311.89  Aligned_cols=215  Identities=22%  Similarity=0.252  Sum_probs=167.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+|+.++||||+++++++..         +|+++|
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e  110 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMP  110 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEE
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEe
Confidence            3799999999999999999999996554332    223568899999999999999999998643         599999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      | +++|.+.                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... 
T Consensus       111 ~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~-  180 (367)
T 1cm8_A          111 FMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHA------AGIIHRDLKPGNLAVNED---CELKILDFGLARQADS-  180 (367)
T ss_dssp             CCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECCS-
T ss_pred             cCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCcCHHHEEEcCC---CCEEEEeeeccccccc-
Confidence            9 6665544                   67888888      999999999999999975   8999999999987543 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-------------  186 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-------------  186 (379)
                       .....+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+             
T Consensus       181 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  259 (367)
T 1cm8_A          181 -EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAK  259 (367)
T ss_dssp             -SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHH
T ss_pred             -ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHH
Confidence             34567899999999                999999999999999999888777776654211111             


Q ss_pred             --------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         187 --------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       187 --------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                                    ...++.+++.+.+||.+||..||.+|||++|+|+||||.........+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~~~~~  321 (367)
T 1cm8_A          260 NYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDEP  321 (367)
T ss_dssp             HHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC------
T ss_pred             HHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCCccCC
Confidence                          123356799999999999999999999999999999999876554433

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2e-39  Score=304.70  Aligned_cols=210  Identities=19%  Similarity=0.220  Sum_probs=166.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||+|+||.||+|++. +|+.||+++....    .....+.+|+.+++.++||||+++++++.+   +|++||| .|.+
T Consensus        27 ~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~l  105 (311)
T 3niz_A           27 EKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDL  105 (311)
T ss_dssp             EEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCSEEH
T ss_pred             hhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCCCCH
Confidence            48999999999999985 4777775433222    123568899999999999999999999765   7999999 5555


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      .+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++..... ...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~a~~~~~~~~~~  176 (311)
T 3niz_A          106 KKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ------HRILHRDLKPQNLLINSD---GALKLADFGLARAFGIPVRSY  176 (311)
T ss_dssp             HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEETTSCCC--
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCchHhEEECCC---CCEEEccCcCceecCCCcccc
Confidence            443                     67888888      999999999999999986   89999999999876433 234


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC----------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP----------------  186 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~----------------  186 (379)
                      ...+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+                
T Consensus       177 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3niz_A          177 THEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQR  256 (311)
T ss_dssp             -CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSC
T ss_pred             cCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhc
Confidence            456789999999                999999999999999998777666655543111100                


Q ss_pred             ----------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         187 ----------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       187 ----------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                ....+.+++++.+||.+||..||++|||++|+|+||||++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  308 (311)
T 3niz_A          257 TFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLD  308 (311)
T ss_dssp             CCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSC
T ss_pred             ccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCC
Confidence                      012245789999999999999999999999999999998765

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=4.3e-39  Score=302.32  Aligned_cols=217  Identities=24%  Similarity=0.361  Sum_probs=172.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +++||+|+||.||+|++..+|+.||++.....  .....+.+|+.+++.+ +||||+++++++.+   +|++|||  +|+
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   97 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS   97 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCc
Confidence            35899999999999999999999885433222  2346789999999984 79999999998764   8999999  677


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC----
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG----  135 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~----  135 (379)
                      |.+.                    .|+.|||+      +||+||||||+||+++.++....+||+|||++......    
T Consensus        98 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  171 (316)
T 2ac3_A           98 ILSHIHKRRHFNELEASVVVQDVASALDFLHN------KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS  171 (316)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---------
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc
Confidence            7665                    67888888      99999999999999998643345999999999765321    


Q ss_pred             ----ccccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCC---------------hHHHHH
Q psy6046         136 ----IEIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGET---------------DSETFR  176 (379)
Q Consensus       136 ----~~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~---------------~~~~~~  176 (379)
                          ......+||+.|+||                    |+||++|+|++|..||.+..               ......
T Consensus       172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  251 (316)
T 2ac3_A          172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFE  251 (316)
T ss_dssp             ----------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHH
T ss_pred             cccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHH
Confidence                122345799999999                    99999999999999998754               245677


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      .+..+...+|...+..+++.+.+||.+||..||.+|||+.|+++||||++..+.
T Consensus       252 ~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          252 SIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             HHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC-----
T ss_pred             HHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCCCc
Confidence            788888888877777899999999999999999999999999999999876543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=8.9e-40  Score=320.85  Aligned_cols=215  Identities=22%  Similarity=0.290  Sum_probs=181.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||+||+|+++.+|+.|| +|....      .....+.+|+.++..++||||+++++++.+   +|++|||  +
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~g  158 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFA-MKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVG  158 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEE-EEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEE-EEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCC
Confidence            489999999999999999998888 454432      223458999999999999999999998765   8999999  7


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|+..                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......
T Consensus       159 g~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~------~giiHrDLKp~NILl~~~---g~vkL~DFGla~~~~~~~  229 (437)
T 4aw2_A          159 GDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQ------LHYVHRDIKPDNILMDMN---GHIRLADFGSCLKLMEDG  229 (437)
T ss_dssp             CBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECCTTS
T ss_pred             CcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh------CCeEecccCHHHeeEcCC---CCEEEcchhhhhhcccCC
Confidence            787766                     67888888      999999999999999975   899999999998765433


Q ss_pred             c--ccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC--CCCCCcccccC
Q psy6046         137 E--IRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA--QLDFPDELFED  192 (379)
Q Consensus       137 ~--~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~  192 (379)
                      .  ....+||+.|+||                    |+||++|+|++|++||.+.+..+.+..|...  .+.+|.. +..
T Consensus       230 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~-~~~  308 (437)
T 4aw2_A          230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQ-VTD  308 (437)
T ss_dssp             CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSS-CCC
T ss_pred             CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcc-ccc
Confidence            2  3446899999999                    9999999999999999999999888888653  2444432 346


Q ss_pred             CCHHHHHHHHHhcccCCCC--CCCHHHHhcCccccCCccccccc
Q psy6046         193 ISPEAKDFIAKILIKNPME--RMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~--Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                      +|+++++||++||..+|++  |++++|+++||||++..|.....
T Consensus       309 ~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i~w~~l~~  352 (437)
T 4aw2_A          309 VSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIRN  352 (437)
T ss_dssp             SCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTCCTTTGGG
T ss_pred             CCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCCCHHHHhh
Confidence            8999999999999998888  99999999999999988876543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.9e-39  Score=304.80  Aligned_cols=217  Identities=30%  Similarity=0.451  Sum_probs=181.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|++..+|+.||++.....    .....+.+|+.+++.+. ||||+++++++.+   +|+++||  +|
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~  114 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG  114 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence            5899999999999999999999885333221    22457899999999996 6999999998765   7999999  66


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|.+.                      .|+.|||+      +||+||||||+||+++...+++.+||+|||+++......
T Consensus       115 ~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~------~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~  188 (327)
T 3lm5_A          115 EIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQ------NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHAC  188 (327)
T ss_dssp             EGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC----
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCcc
Confidence            66554                      67888888      999999999999999974445899999999999876655


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+|+++|+|++|..||.+.+..+....+......++...+..+++.+.+||
T Consensus       189 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  268 (327)
T 3lm5_A          189 ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFI  268 (327)
T ss_dssp             -----CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHH
T ss_pred             ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHH
Confidence            56667899999999               999999999999999999999999888888888888777788999999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                      .+||..||.+|||++++|+||||++..+..
T Consensus       269 ~~~L~~dP~~Rpt~~~ll~h~~~~~~~~~~  298 (327)
T 3lm5_A          269 QSLLVKNPEKRPTAEICLSHSWLQQWDFEN  298 (327)
T ss_dssp             HHHSCSSGGGSCCHHHHTTCGGGCCCCTTC
T ss_pred             HHHcCCChhhCcCHHHHhCCHhhccccccc
Confidence            999999999999999999999999876543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=303.32  Aligned_cols=211  Identities=16%  Similarity=0.210  Sum_probs=170.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCC---CCCcceeeeecCc-------
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIK---VEPIEKYYSLDPE-------   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~---hpnIv~~~~~~~~-------   69 (379)
                      .+.||+|+||.||+|++..+|+.||+ |.....        ....+.+|+.+++.++   ||||+++++++..       
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~   92 (308)
T 3g33_A           14 VAEIGVGAYGTVYKARDPHSGHFVAL-KSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREI   92 (308)
T ss_dssp             EEEECCSSSCCEEEEECTTTCCEEEE-EEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEE-EEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCce
Confidence            34899999999999999999999885 443321        1346788888888776   9999999998643       


Q ss_pred             -ceEEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          70 -PLLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        70 -~~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                       +++++|+ .|+|.+.                      .|+.|||+      +||+||||||+||+++.+   +.+||+|
T Consensus        93 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dlkp~Nil~~~~---~~~kl~D  163 (308)
T 3g33_A           93 KVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA------NCIVHRDLKPENILVTSG---GTVKLAD  163 (308)
T ss_dssp             EEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCTTTEEECTT---SCEEECS
T ss_pred             eEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEcCC---CCEEEee
Confidence             6899999 5565554                      67888888      999999999999999875   8999999


Q ss_pred             cccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc---
Q psy6046         126 FEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD---  187 (379)
Q Consensus       126 FG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~---  187 (379)
                      ||+++...........+||+.|+||               |+||++|+|++|++||.+.+..+.+..+.......+.   
T Consensus       164 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  243 (308)
T 3g33_A          164 FGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDW  243 (308)
T ss_dssp             CSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred             CccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhc
Confidence            9999877655556678899999999               9999999999999999999888887777542211111   


Q ss_pred             --------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 --------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 --------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                          ...+.+++.+.+||.+||..||++|||+.|+|+||||++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          244 PRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             CSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             cchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence                                12246889999999999999999999999999999998653

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=3.5e-39  Score=299.91  Aligned_cols=213  Identities=19%  Similarity=0.191  Sum_probs=169.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cc
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RP   78 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g   78 (379)
                      ..+.||+|+||+||+|++..+|+.||++.....    .....+.+|+.+++.++||||+++++++.+   +|++||| .|
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   85 (292)
T 3o0g_A            6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ   85 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             eeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC
Confidence            345899999999999999999999885443322    123568899999999999999999998754   8999999 55


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-c
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-I  136 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~  136 (379)
                      .+...                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++..... .
T Consensus        86 ~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~------~~ivH~dikp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~  156 (292)
T 3o0g_A           86 DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS------RNVLHRDLKPQNLLINRN---GELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECCSCCS
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEeecccceecCCccc
Confidence            44433                     67888888      999999999999999985   89999999999876433 2


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCC-CCCCChHHHHHHHHhCCCCCCc------------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSP-FGGETDSETFRNISKAQLDFPD------------  187 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~P-f~~~~~~~~~~~i~~~~~~~~~------------  187 (379)
                      .....+||+.|+||                |+||++|+|++|..| |.+.+..+.+..+.......+.            
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (292)
T 3o0g_A          157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY  236 (292)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred             cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccc
Confidence            34556789999999                999999999987777 5666777776666442111111            


Q ss_pred             -------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 -------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 -------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                   ...+.+++++++||.+||..||++|||++|+|+||||++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  290 (292)
T 3o0g_A          237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC-
T ss_pred             cccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccCC
Confidence                         12235789999999999999999999999999999998653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=2e-39  Score=301.08  Aligned_cols=212  Identities=18%  Similarity=0.225  Sum_probs=165.8

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      -..+.||+|+||.||+|++ .+|+.||+++....    .....+.+|+.+++.++||||+++++++.+   .|+++|+ .
T Consensus         5 ~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (288)
T 1ob3_A            5 HGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             hhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecC
Confidence            3446899999999999998 67888885544322    223568899999999999999999998754   8999999 5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      |++.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++..... 
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~  154 (288)
T 1ob3_A           84 QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD------RRVLHRDLKPQNLLINRE---GELKIADFGLARAFGIPV  154 (288)
T ss_dssp             EEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECCTTHHHHHCC--
T ss_pred             CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CCEEEeECccccccCccc
Confidence            554443                     67888888      999999999999999875   89999999999765422 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-------------  186 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-------------  186 (379)
                      ......+||+.|+||                |+||++|+|++|.+||.+.+..+.+..+.......+             
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T 1ob3_A          155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY  234 (288)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence            233456789999999                999999999999999999887777666643110000             


Q ss_pred             ------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         187 ------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       187 ------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                                  ......+++++.+||.+||..||++|||++|+++||||++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence                        11224689999999999999999999999999999999754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=9.3e-39  Score=329.70  Aligned_cols=213  Identities=21%  Similarity=0.292  Sum_probs=186.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+||+|+||.||+|+++.+|+.||+ |....      ...+.+..|..++..+ +||+|+++++++.+   +|++||| 
T Consensus       346 ~~~LG~G~fG~V~~~~~~~~~~~vAv-K~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~  424 (674)
T 3pfq_A          346 LMVLGKGSFGKVMLSERKGTDELYAV-KILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV  424 (674)
T ss_dssp             EEESSBTTTBCEEEEEESSSCCEEEE-EEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECC
T ss_pred             EEEEccCCCEEEEEEEECCCCcEEEE-EEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCc
Confidence            34899999999999999999998885 44332      3456788999999988 69999999998876   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-c
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-D  134 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~  134 (379)
                       +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+... .
T Consensus       425 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~gIiHrDLKp~NILl~~~---g~ikL~DFGla~~~~~~  495 (674)
T 3pfq_A          425 NGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQS------KGIIYRDLKLDNVMLDSE---GHIKIADFGMCKENIWD  495 (674)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TSEECCCCCSTTEEECSS---SCEEECCCTTCEECCCT
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEeccCChhhEEEcCC---CcEEEeecceeeccccC
Confidence             7788766                    67888888      999999999999999986   899999999998643 3


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......+||+.|+||               |+||++|+|++|++||.+.+..+++..|....+.+|.    .+|+++.+
T Consensus       496 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~  571 (674)
T 3pfq_A          496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK----SMSKEAVA  571 (674)
T ss_dssp             TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCT----TSCHHHHH
T ss_pred             CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCc----cCCHHHHH
Confidence            3345678999999999               9999999999999999999999999999999888775    58999999


Q ss_pred             HHHHhcccCCCCCCCH-----HHHhcCccccCCccccccc
Q psy6046         200 FIAKILIKNPMERMTA-----KEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~-----~e~l~hp~~~~~~~~~~~~  234 (379)
                      ||.+||..||.+||++     +|+++||||+..+|.....
T Consensus       572 li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~  611 (674)
T 3pfq_A          572 ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLER  611 (674)
T ss_dssp             HHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTT
T ss_pred             HHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHh
Confidence            9999999999999997     9999999999998876543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.8e-39  Score=311.20  Aligned_cols=213  Identities=19%  Similarity=0.244  Sum_probs=161.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+++.++||||+++++++.         ..|++||
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e  110 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVME  110 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEE
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEE
Confidence            4899999999999999999998885444322    22356889999999999999999999864         3699999


Q ss_pred             C-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          76 P-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        76 ~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      | .|.+.+.                  .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       111 ~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dlkp~NIl~~~~---~~~kl~Dfg~a~~~~~~~  181 (371)
T 2xrw_A          111 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTSF  181 (371)
T ss_dssp             CCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECCCCC--------
T ss_pred             cCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHH------CCeecccCCHHHEEEcCC---CCEEEEEeeccccccccc
Confidence            9 6655554                  67888888      999999999999999975   899999999998765554


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc-----------
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF-----------  190 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~-----------  190 (379)
                      .....+||+.|+||               |+||++|+|++|..||.+.+..+.+..+.......++..+           
T Consensus       182 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  261 (371)
T 2xrw_A          182 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYV  261 (371)
T ss_dssp             --------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHH
T ss_pred             ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHH
Confidence            55667899999999               9999999999999999998888777777553222111100           


Q ss_pred             ---------------------------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         191 ---------------------------EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       191 ---------------------------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                                 ...++++++||.+||..||++|||++|+|+||||......
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~~~  328 (371)
T 2xrw_A          262 ENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDP  328 (371)
T ss_dssp             HSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTTCCH
T ss_pred             hhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhhcCc
Confidence                                       0125789999999999999999999999999999865543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=7.1e-39  Score=302.72  Aligned_cols=207  Identities=20%  Similarity=0.304  Sum_probs=168.7

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .||+|+||.||+|++..+|+.||+ |....    ...+.+.+|+.+++.++||||+++++++.+   .|++|||  +|+|
T Consensus        14 ~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L   92 (323)
T 3tki_A           14 TLGEGAYGEVQLAVNRVTEEAVAV-KIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL   92 (323)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEE-EEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEG
T ss_pred             EEecCCCEEEEEEEECCCCcEEEE-EEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcH
Confidence            899999999999999999998884 54432    223568999999999999999999998765   7999999  6677


Q ss_pred             hHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---c
Q psy6046          81 YQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---E  137 (379)
Q Consensus        81 ~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---~  137 (379)
                      ++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......   .
T Consensus        93 ~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~------~givH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~~~~~~  163 (323)
T 3tki_A           93 FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG------IGITHRDIKPENLLLDER---DNLKISDFGLATVFRYNNRERL  163 (323)
T ss_dssp             GGGSBTTTBCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTTCEECEETTEECC
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccccchHHEEEeCC---CCEEEEEeeccceeccCCcccc
Confidence            665                    67888888      999999999999999975   899999999998764322   2


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ....+||+.|+||                |+||++|+|++|..||.+.+.. .............+  .+..+++.+.+|
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  241 (323)
T 3tki_A          164 LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN--PWKKIDSAPLAL  241 (323)
T ss_dssp             BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST--TGGGSCHHHHHH
T ss_pred             cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC--ccccCCHHHHHH
Confidence            4467899999999                9999999999999999876543 23333333332222  245789999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||++|+++||||....
T Consensus       242 i~~~L~~dP~~R~t~~eil~h~~~~~~~  269 (323)
T 3tki_A          242 LHKILVENPSARITIPDIKKDRWYNKPL  269 (323)
T ss_dssp             HHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             HHHHccCChhhCcCHHHHhhChhhcccc
Confidence            9999999999999999999999998654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=6.3e-39  Score=308.14  Aligned_cols=207  Identities=26%  Similarity=0.386  Sum_probs=183.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----------chHHHHHHHHHHhC-CCCCcceeeeecCc---ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----------GVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----------~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v   73 (379)
                      ++||+|+||.||+|++..+|+.|| +|+.....           .+.+.+|+.+++.+ +||||+++++++..   .|++
T Consensus       100 ~~lg~G~~g~Vy~a~~~~~g~~va-vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  178 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRATGHEFA-VKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLV  178 (365)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEE-EEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEE-EEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEE
Confidence            589999999999999999999888 55443211           34688999999999 79999999998654   7999


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |||  +|+|.+.                    .|+.|||+      .||+||||||+||+++.+   +.+||+|||++..
T Consensus       179 ~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~------~gi~H~Dlkp~NIl~~~~---~~ikl~DfG~~~~  249 (365)
T 2y7j_A          179 FDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHA------NNIVHRDLKPENILLDDN---MQIRLSDFGFSCH  249 (365)
T ss_dssp             ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTTCEE
T ss_pred             EEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEECCC---CCEEEEecCcccc
Confidence            999  6677665                    67888888      999999999999999875   8999999999988


Q ss_pred             eccCccccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         132 ILDGIEIRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ..........+||+.|+||                     |+||++|+|++|..||.+.+.......+..+...++.+.+
T Consensus       250 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  329 (365)
T 2y7j_A          250 LEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEW  329 (365)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHH
T ss_pred             cCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCccc
Confidence            7766666778899999999                     9999999999999999999888888999988888877777


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ..+++.+.+||.+||..||.+|||+.++++||||+
T Consensus       330 ~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  364 (365)
T 2y7j_A          330 DDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE  364 (365)
T ss_dssp             SSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccC
Confidence            88999999999999999999999999999999996

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=7.6e-39  Score=302.96  Aligned_cols=210  Identities=23%  Similarity=0.320  Sum_probs=171.2

Q ss_pred             cCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ++||+|+||.||+|++.   .+|+.||+ |....       .....+.+|+.+|+.++||||+++++++.+   +|++||
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  101 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAM-KVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILE  101 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEE-EEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEE-EEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEe
Confidence            48999999999999985   67888884 54432       233557899999999999999999998764   899999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |  +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++...
T Consensus       102 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~------~~ivH~Dlkp~Nill~~~---~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A          102 YLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQ------KGIIYRDLKPENIMLNHQ---GHVKLTDFGLCKESI  172 (327)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCTTTEEECTT---SCEEECCCSCC----
T ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh------CCEEcccCCHHHeEECCC---CcEEEEeCCcccccc
Confidence            9  6777665                    57888888      999999999999999875   899999999997643


Q ss_pred             c-CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         134 D-GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       134 ~-~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      . .......+||+.|+||               |+||++|+|++|..||.+.+..+....+......+|.    .+++++
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~  248 (327)
T 3a62_A          173 HDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPP----YLTQEA  248 (327)
T ss_dssp             ------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCT----TSCHHH
T ss_pred             cCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCC----CCCHHH
Confidence            3 2334567899999999               9999999999999999999999999999888777664    589999


Q ss_pred             HHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         198 KDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      .+||.+||..||.+||     ++.++++||||+...|...
T Consensus       249 ~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~  288 (327)
T 3a62_A          249 RDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEEL  288 (327)
T ss_dssp             HHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHH
T ss_pred             HHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHHH
Confidence            9999999999999999     8999999999998876654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=5.2e-39  Score=306.58  Aligned_cols=211  Identities=17%  Similarity=0.186  Sum_probs=173.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----------ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~v   73 (379)
                      +.||+|+||.||+|++..+|+.||+++....    .....+.+|+.+++.++||||+++++++.+           +|++
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv  102 (351)
T 3mi9_A           23 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLV  102 (351)
T ss_dssp             EECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEE
T ss_pred             EEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEE
Confidence            4899999999999999999999985444322    123468899999999999999999998643           6899


Q ss_pred             eeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|| .|.+...                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.
T Consensus       103 ~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~ivH~Dlkp~NIl~~~~---~~~kl~Dfg~a~~  173 (351)
T 3mi9_A          103 FDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR------NKILHRDMKAANVLITRD---GVLKLADFGLARA  173 (351)
T ss_dssp             EECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEE
T ss_pred             EeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeeCCCCCHHHEEEcCC---CCEEEccchhccc
Confidence            999 5544443                     67888888      999999999999999975   8999999999987


Q ss_pred             eccC-----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         132 ILDG-----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       132 ~~~~-----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ....     ......+||+.|+||                |+||++|+|++|.+||.+.+..+....+......++...+
T Consensus       174 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  253 (351)
T 3mi9_A          174 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW  253 (351)
T ss_dssp             CCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred             ccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhc
Confidence            6422     223456789999999                9999999999999999999988888777664444443333


Q ss_pred             cC----------------------------CCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         191 ED----------------------------ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       191 ~~----------------------------~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.                            .++.+.+||.+||..||++|||++|+|+||||....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  319 (351)
T 3mi9_A          254 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  319 (351)
T ss_dssp             TTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSS
T ss_pred             cccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCC
Confidence            32                            278899999999999999999999999999997654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.4e-38  Score=311.45  Aligned_cols=212  Identities=21%  Similarity=0.237  Sum_probs=170.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e~-~g   78 (379)
                      ++||+|+||.||+|++..+|+.||+++....  .....+|+++|+.|+||||+++++++..         +++++|| .|
T Consensus        60 ~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~  137 (420)
T 1j1b_A           60 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE  137 (420)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC--TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccc--chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc
Confidence            4899999999999999999999996555432  2334589999999999999999887621         5789999 44


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      .++..                        .|+.|||+      +||+||||||+|||++.+  .+.+||+|||+++....
T Consensus       138 ~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~NILl~~~--~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          138 TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS------FGICHRDIKPQNLLLDPD--TAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT------TTEECSCCSGGGEEEETT--TTEEEECCCTTCEECCT
T ss_pred             cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCChhhEEEeCC--CCeEEeccchhhhhccc
Confidence            44322                        57778887      999999999999999864  36789999999998766


Q ss_pred             CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC-----------------
Q psy6046         135 GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-----------------  181 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~-----------------  181 (379)
                      .......+||+.|+||                |+||++|+|++|++||.+.+..+.+..+...                 
T Consensus       210 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~  289 (420)
T 1j1b_A          210 GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYT  289 (420)
T ss_dssp             TCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCC
T ss_pred             CCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh
Confidence            6556678899999999                9999999999999999998877766655431                 


Q ss_pred             CCCCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         182 QLDFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       182 ~~~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      .+.+|.        .....+++++.+||.+||..||.+|||+.|+++||||......
T Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          290 EFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDP  346 (420)
T ss_dssp             CCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             hhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhcccccc
Confidence            111221        0123578999999999999999999999999999999876543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.1e-39  Score=312.20  Aligned_cols=210  Identities=20%  Similarity=0.256  Sum_probs=174.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHH-HHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQL-LKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~i-l~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+||+|+||.||+|+++.+++.||+ |+...      .....+.+|..+ ++.++||||+++++++.+   +|++|||  
T Consensus        44 ~~lG~G~fg~V~~~~~~~~~~~~Ai-K~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~  122 (373)
T 2r5t_A           44 KVIGKGSFGKVLLARHKAEEVFYAV-KVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN  122 (373)
T ss_dssp             EEEECCTTCEEEEEEETTTCCEEEE-EEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEeeCCCeEEEEEEEcCCCCEEEE-EEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCC
Confidence            4899999999999999999998884 54432      223456777776 578999999999998765   8999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cC
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DG  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~  135 (379)
                      +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++... ..
T Consensus       123 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~givHrDlkp~NIll~~~---g~ikL~DFG~a~~~~~~~  193 (373)
T 2r5t_A          123 GGELFYHLQRERCFLEPRARFYAAEIASALGYLHS------LNIVYRDLKPENILLDSQ---GHIVLTDFGLCKENIEHN  193 (373)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCCCBCGGGBCCC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCHHHEEECCC---CCEEEeeCccccccccCC
Confidence            7788765                    67888888      999999999999999986   899999999997643 33


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+......++.    .+++++++|
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~l  269 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKP----NITNSARHL  269 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCS----SSCHHHHHH
T ss_pred             CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCC----CCCHHHHHH
Confidence            345678999999999               9999999999999999999999999999988777664    589999999


Q ss_pred             HHHhcccCCCCCCCH----HHHhcCccccCCccccc
Q psy6046         201 IAKILIKNPMERMTA----KEALKHPWLMNKKQIMT  232 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~----~e~l~hp~~~~~~~~~~  232 (379)
                      |.+||..||.+||++    .++++||||+..+|...
T Consensus       270 i~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l  305 (373)
T 2r5t_A          270 LEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDL  305 (373)
T ss_dssp             HHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHcccCHHhCCCCCCCHHHHhCCccccCCCHHHH
Confidence            999999999999986    69999999999887664

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=308.22  Aligned_cols=215  Identities=20%  Similarity=0.213  Sum_probs=168.1

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-C
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      -..+.||+|+||.||+|++..+|+.||+ |.....    ....+.+|+.+++.++||||+++++++.+   .|++||| .
T Consensus         5 ~~~~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (324)
T 3mtl_A            5 IKLDKLGEGTYATVYKGKSKLTDNLVAL-KEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD   83 (324)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEE-EEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             EEEEEEcCCCCEEEEEEEECCCCcEEEE-EEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc
Confidence            3446899999999999999999998885 443321    12245689999999999999999998754   7999999 5


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |++.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~a~~~~~~~  154 (324)
T 3mtl_A           84 KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHR------QKVLHRDLKPQNLLINER---GELKLADFGLARAKSIPT  154 (324)
T ss_dssp             EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEEESSCCGGGEEECTT---CCEEECSSSEEECC----
T ss_pred             cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCccCCCcCHHHEEECCC---CCEEEccCcccccccCCc
Confidence            555544                     67888888      999999999999999875   899999999998654322


Q ss_pred             -cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc-----------
Q psy6046         137 -EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-----------  188 (379)
Q Consensus       137 -~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~-----------  188 (379)
                       .....+||+.|+||                |+||++|+|++|++||.+.+..+....+.......+..           
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  234 (324)
T 3mtl_A          155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF  234 (324)
T ss_dssp             --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred             cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhh
Confidence             34456789999999                99999999999999999998888777765522111111           


Q ss_pred             ---------------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         189 ---------------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       189 ---------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                     ..+.+++++.+||.+||..||.+|||++|+|+||||.+....
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  291 (324)
T 3mtl_A          235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER  291 (324)
T ss_dssp             HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCST
T ss_pred             cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccc
Confidence                           123578999999999999999999999999999999876644

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=312.80  Aligned_cols=219  Identities=15%  Similarity=0.192  Sum_probs=156.4

Q ss_pred             cCccCcCCCCceEEEEEEEc--CCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-C
Q psy6046           6 MASHVGGNRARSSCSRKPEK--TTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-R   77 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~--~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-~   77 (379)
                      +.+++||+|+||.||+|+++  .+++.||+++.........+.+|+.+|+.|+||||+++++++.     .+|+++|| .
T Consensus        24 ~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~  103 (405)
T 3rgf_A           24 YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE  103 (405)
T ss_dssp             CSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred             hcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence            34668999999999999976  4677788544444444567899999999999999999999872     27999999 5


Q ss_pred             chhhHH-----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec-CCCCcEEEeecc
Q psy6046          78 PPVYQA-----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFE  127 (379)
Q Consensus        78 g~l~~~-----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG  127 (379)
                      |.+++.                             .|+.|||+      +||+||||||+|||+..+ ..++.+||+|||
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg  177 (405)
T 3rgf_A          104 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA------NWVLHRDLKPANILVMGEGPERGRVKIADMG  177 (405)
T ss_dssp             EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECCSSTTTTCEEECCTT
T ss_pred             CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh------CCEeCCCcCHHHeEEecCCCCCCcEEEEECC
Confidence            554432                             56778887      999999999999999543 224899999999


Q ss_pred             cceeeccC----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCCh---------HHHHHHH
Q psy6046         128 ISRVILDG----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETD---------SETFRNI  178 (379)
Q Consensus       128 ~a~~~~~~----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~---------~~~~~~i  178 (379)
                      +++.....    ......+||+.|+||                |+||++|+|++|.+||.+...         .+.+..+
T Consensus       178 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i  257 (405)
T 3rgf_A          178 FARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRI  257 (405)
T ss_dssp             CCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHH
T ss_pred             CceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHH
Confidence            99876432    234557899999999                999999999999999976543         2344444


Q ss_pred             HhCCCCCCccccc----------------------------------CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         179 SKAQLDFPDELFE----------------------------------DISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       179 ~~~~~~~~~~~~~----------------------------------~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      .......+...|.                                  ..++.+.+||.+||..||.+|||++|+|+||||
T Consensus       258 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f  337 (405)
T 3rgf_A          258 FNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  337 (405)
T ss_dssp             HHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred             HHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhh
Confidence            3311111111111                                  127889999999999999999999999999999


Q ss_pred             cCCccc
Q psy6046         225 MNKKQI  230 (379)
Q Consensus       225 ~~~~~~  230 (379)
                      .+....
T Consensus       338 ~~~~~~  343 (405)
T 3rgf_A          338 LEDPLP  343 (405)
T ss_dssp             TSSSCC
T ss_pred             ccCCCC
Confidence            876543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=5e-39  Score=311.96  Aligned_cols=212  Identities=23%  Similarity=0.257  Sum_probs=171.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEeeC-Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLNP-RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e~-~g   78 (379)
                      .+||+|+||.||+|++..+++ +|++|+....  ....+|+.+|+.++||||+++++++..         +|++||| .|
T Consensus        46 ~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~--~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~  122 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKLVESDE-VAIKKVLQDK--RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE  122 (394)
T ss_dssp             EEEEEETTEEEEEEEETTTEE-EEEEEEECCT--TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSE
T ss_pred             EEEeeCCCeEEEEEEECCCCe-EEEEEEecCc--chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCc
Confidence            489999999999999988776 7766665442  233579999999999999999988631         6799999 44


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      .++..                        .|+.|||+      +||+||||||+|||++..  ++.+||+|||+|+....
T Consensus       123 ~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivHrDlkp~Nill~~~--~~~~kL~DFG~a~~~~~  194 (394)
T 4e7w_A          123 TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS------IGICHRDIKPQNLLLDPP--SGVLKLIDFGSAKILIA  194 (394)
T ss_dssp             EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEETT--TTEEEECCCTTCEECCT
T ss_pred             cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccCCCCCHHHEEEcCC--CCcEEEeeCCCcccccC
Confidence            43322                        67888888      999999999999999833  38999999999998766


Q ss_pred             CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC----------------
Q psy6046         135 GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ----------------  182 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~----------------  182 (379)
                      .......+||+.|+||                |+||++|+|++|++||.+.+..+.+..+....                
T Consensus       195 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~  274 (394)
T 4e7w_A          195 GEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYM  274 (394)
T ss_dssp             TCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGS
T ss_pred             CCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh
Confidence            6666678899999999                99999999999999999988877776664421                


Q ss_pred             -CCCC--------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         183 -LDFP--------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       183 -~~~~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                       ..++        ......+++++.+||.+||..||.+|||+.|+++||||++..+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  332 (394)
T 4e7w_A          275 EHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTGE  332 (394)
T ss_dssp             SSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTSSC
T ss_pred             hhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcccc
Confidence             1111        112235899999999999999999999999999999999876544

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=6.1e-39  Score=323.14  Aligned_cols=210  Identities=20%  Similarity=0.298  Sum_probs=180.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+|+.++||||+++++++.+   +|++|||  +
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAv-K~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~g  268 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYAC-KKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG  268 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEE-EEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCC
Confidence            4899999999999999999999985 44322      234568899999999999999999998765   8999999  7


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|...                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....
T Consensus       269 g~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~------~gIvHrDLKPeNILld~~---g~vKL~DFGla~~~~~~  339 (576)
T 2acx_A          269 GDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR------ERIVYRDLKPENILLDDH---GHIRISDLGLAVHVPEG  339 (576)
T ss_dssp             CBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---SCEEECCCTTCEECCTT
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeccCCchheEEEeCC---CCeEEEecccceecccC
Confidence            777654                      67888888      999999999999999975   89999999999987666


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC----hHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET----DSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ......+||+.|+||               |+||++|+|++|.+||.+.+    ..++...+......++    ..+|++
T Consensus       340 ~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p----~~~s~~  415 (576)
T 2acx_A          340 QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYS----ERFSPQ  415 (576)
T ss_dssp             CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCC----TTSCHH
T ss_pred             ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCC----ccCCHH
Confidence            556677999999999               99999999999999998753    4566677776666555    368999


Q ss_pred             HHHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         197 AKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +++||.+||..||.+||     +++|+++||||++.+|...
T Consensus       416 ~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l  456 (576)
T 2acx_A          416 ARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRL  456 (576)
T ss_dssp             HHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHH
Confidence            99999999999999999     8999999999999887654

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=3.6e-39  Score=308.37  Aligned_cols=219  Identities=17%  Similarity=0.147  Sum_probs=164.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCCCcceeeeecCc----------ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----------PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----------~~~v~e~   76 (379)
                      .+.||+|+||.||+|++..+|+.||+++.... .......+|+..++.++||||+++++++..          +|++|||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~  107 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEY  107 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEEC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeec
Confidence            45899999999999999999999986544332 334567888999999999999999998643          7899999


Q ss_pred             -CchhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       .|.+...                        .|+.|||    +|++||+||||||+|||++..  ++.+||+|||+++.
T Consensus       108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH----~~~~~ivH~Dlkp~NIll~~~--~~~~kl~Dfg~a~~  181 (360)
T 3e3p_A          108 VPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH----LPSVNVCHRDIKPHNVLVNEA--DGTLKLCDFGSAKK  181 (360)
T ss_dssp             CSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT----STTTCCBCSCCCGGGEEEETT--TTEEEECCCTTCBC
T ss_pred             ccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh----CCCCCeecCcCCHHHEEEeCC--CCcEEEeeCCCcee
Confidence             4443321                        5667777    124999999999999999863  37999999999988


Q ss_pred             eccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc--------
Q psy6046         132 ILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD--------  187 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~--------  187 (379)
                      ..........+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+.        
T Consensus       182 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T 3e3p_A          182 LSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNP  261 (360)
T ss_dssp             CCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCT
T ss_pred             cCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhccc
Confidence            7666556677899999999                9999999999999999998887777766542111110        


Q ss_pred             --------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         188 --------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       188 --------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                          ......++++.+||.+||..||.+|||+.|+|+||||++......
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~  326 (360)
T 3e3p_A          262 SHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDPAT  326 (360)
T ss_dssp             TCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTTC
T ss_pred             chhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCccc
Confidence                                011125789999999999999999999999999999998765443

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.3e-39  Score=312.59  Aligned_cols=213  Identities=23%  Similarity=0.268  Sum_probs=178.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|+++.+|+.||+ |....      .....+.+|..++..++||||+++++++.+   +|++|||  +
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAi-K~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~g  145 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAM-KIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVG  145 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEE-EEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCC
Confidence            4899999999999999999999885 54432      234568999999999999999999998765   8999999  7


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|+..                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       146 g~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~giiHrDLKp~NILld~~---g~vkL~DFGla~~~~~~~  216 (412)
T 2vd5_A          146 GDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHR------LGYVHRDIKPDNILLDRC---GHIRLADFGSCLKLRADG  216 (412)
T ss_dssp             CBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECCTTS
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecccCHHHeeecCC---CCEEEeechhheeccCCC
Confidence            777766                     67888888      999999999999999985   899999999998765443


Q ss_pred             c--ccccccCCCCcch----------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC--CCCCcccc
Q psy6046         137 E--IRELLGTPDYVGK----------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ--LDFPDELF  190 (379)
Q Consensus       137 ~--~~~~~gt~~y~aP----------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~  190 (379)
                      .  ....+||+.|+||                      |+||++|+|++|++||.+.+..+.+.+|....  ..+|. ..
T Consensus       217 ~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~-~~  295 (412)
T 2vd5_A          217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPL-VD  295 (412)
T ss_dssp             CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----
T ss_pred             ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCc-cc
Confidence            2  3346899999999                      99999999999999999999988888887532  33332 23


Q ss_pred             cCCCHHHHHHHHHhcccCCCCC---CCHHHHhcCccccCCcccccc
Q psy6046         191 EDISPEAKDFIAKILIKNPMER---MTAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~R---pt~~e~l~hp~~~~~~~~~~~  233 (379)
                      ..+|+++++||.+||. +|.+|   |+++|+++||||++.+|....
T Consensus       296 ~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~l~  340 (412)
T 2vd5_A          296 EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWDGLR  340 (412)
T ss_dssp             -CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCSTTST
T ss_pred             cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHHHHh
Confidence            4689999999999999 99998   599999999999998887653

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=3.8e-39  Score=317.71  Aligned_cols=211  Identities=23%  Similarity=0.321  Sum_probs=171.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   +|++|||  +
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  232 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAM-KILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG  232 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSS
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEE-EEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCC
Confidence            4899999999999999999999885 44332      234567899999999999999999998764   8999999  6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec-cCc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGI  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~-~~~  136 (379)
                      |+|+..                    .|+.|||+     .+||+||||||+|||++.+   +.+||+|||+|+... ...
T Consensus       233 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~-----~~giiHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~~  304 (446)
T 4ejn_A          233 GELFFHLSRERVFSEDRARFYGAEIVSALDYLHS-----EKNVVYRDLKLENLMLDKD---GHIKITDFGLCKEGIKDGA  304 (446)
T ss_dssp             CBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH-----HTCCCCCCCCGGGEEECSS---SCEEECCCCCCCTTCC---
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-----cCCEEECCCCHHHEEECCC---CCEEEccCCCceeccCCCc
Confidence            777655                    45666663     1899999999999999986   899999999997633 233


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+||+.|+||               |+||++|+|++|+.||.+.+..+....+......+|.    .+++++.+||
T Consensus       305 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~~~~~~~li  380 (446)
T 4ejn_A          305 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR----TLGPEAKSLL  380 (446)
T ss_dssp             --CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHHHH
T ss_pred             ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCc----cCCHHHHHHH
Confidence            45668899999999               9999999999999999999999999999888877765    4899999999


Q ss_pred             HHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         202 AKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       202 ~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      .+||..||.+||     |++|+++||||.+..+...
T Consensus       381 ~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~  416 (446)
T 4ejn_A          381 SGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHV  416 (446)
T ss_dssp             HHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHcccCHHHhCCCCCCCHHHHHhCccccCCCHHHH
Confidence            999999999999     9999999999999876544

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-38  Score=302.63  Aligned_cols=213  Identities=17%  Similarity=0.173  Sum_probs=173.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .++||+|+||.||+|++..+|+.||+ |.....        ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        15 ~~~lg~G~~g~Vy~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   93 (346)
T 1ua2_A           15 LDFLGEGQFATVYKARDKNTNQIVAI-KKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   93 (346)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEE-EEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEE-EEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEc
Confidence            35899999999999999999998885 444321        12468899999999999999999998764   8999999


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       .|.+...                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....
T Consensus        94 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~Nil~~~~---~~~kl~Dfg~a~~~~~  164 (346)
T 1ua2_A           94 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ------HWILHRDLKPNNLLLDEN---GVLKLADFGLAKSFGS  164 (346)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECCCGGGSTTTS
T ss_pred             CCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH------CCEECCCCCHHHEEEcCC---CCEEEEecccceeccC
Confidence             5555443                     67888888      999999999999999875   8999999999987643


Q ss_pred             C-ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc----------
Q psy6046         135 G-IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD----------  187 (379)
Q Consensus       135 ~-~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~----------  187 (379)
                      . ......+||+.|+||                |+||++|+|++|.+||.+.+..+.+..+.......+.          
T Consensus       165 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  244 (346)
T 1ua2_A          165 PNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLP  244 (346)
T ss_dssp             CCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSST
T ss_pred             CcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCc
Confidence            3 234557899999999                9999999999999999999888887777543111111          


Q ss_pred             --------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         188 --------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       188 --------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                    ..+..+++++.+||.+||..||.+|||+.|+|+||||.+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~  301 (346)
T 1ua2_A          245 DYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  301 (346)
T ss_dssp             TCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             ccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCC
Confidence                          1224678999999999999999999999999999999876543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.3e-39  Score=309.52  Aligned_cols=212  Identities=19%  Similarity=0.201  Sum_probs=171.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc-----------------
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------------   69 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------------   69 (379)
                      ..+.||+|+||.||+|++..+|+.||+++....  .....+|+.+|+.++||||+++++++..                 
T Consensus        11 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~--~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~   88 (383)
T 3eb0_A           11 LGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD--PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNK   88 (383)
T ss_dssp             EEEEEECC-CEEEEEEEETTTCCEEEEEEEECC--TTSCCHHHHHHTTCCCTTBCCEEEEEEEC----------------
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEecC--cchHHHHHHHHHHcCCCCccchhheeeecCccccccccccccccc
Confidence            345899999999999999999999996555433  2334589999999999999999987621                 


Q ss_pred             ------------------------ceEEeeC-CchhhHH------------------------HHHHHHhcccCCCCCCe
Q psy6046          70 ------------------------PLLGLNP-RPPVYQA------------------------SATTKAGSVLFPPLMDF  100 (379)
Q Consensus        70 ------------------------~~~v~e~-~g~l~~~------------------------~al~~lh~~~~~h~~~i  100 (379)
                                              ++++||| .|.|.+.                        .|+.|||+      +||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~gi  162 (383)
T 3eb0_A           89 LGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS------LGI  162 (383)
T ss_dssp             ---------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT------TTE
T ss_pred             ccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CcC
Confidence                                    6799999 5554332                        56778887      999


Q ss_pred             EeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCC
Q psy6046         101 IFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFS  164 (379)
Q Consensus       101 vHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~  164 (379)
                      +||||||+||+++..  ++.+||+|||+++...........+||+.|+||                |+||++|+|++|++
T Consensus       163 ~H~Dikp~Nil~~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  240 (383)
T 3eb0_A          163 CHRDIKPQNLLVNSK--DNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKP  240 (383)
T ss_dssp             ECSCCCGGGEEEETT--TTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCccCHHHEEEcCC--CCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCC
Confidence            999999999999843  379999999999987666666778899999999                99999999999999


Q ss_pred             CCCCCChHHHHHHHHhCC-----------------CCCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHh
Q psy6046         165 PFGGETDSETFRNISKAQ-----------------LDFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEAL  219 (379)
Q Consensus       165 Pf~~~~~~~~~~~i~~~~-----------------~~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l  219 (379)
                      ||.+.+..+.+..+....                 ..+|.        .....+|+++.+||.+||..||.+|||+.|+|
T Consensus       241 pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l  320 (383)
T 3eb0_A          241 LFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAM  320 (383)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            999988887777664311                 11111        12235799999999999999999999999999


Q ss_pred             cCccccCCc
Q psy6046         220 KHPWLMNKK  228 (379)
Q Consensus       220 ~hp~~~~~~  228 (379)
                      +||||+...
T Consensus       321 ~hp~f~~~~  329 (383)
T 3eb0_A          321 AHPFFDHLR  329 (383)
T ss_dssp             TSGGGHHHH
T ss_pred             cCHHHHHHH
Confidence            999997654

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.6e-38  Score=305.58  Aligned_cols=215  Identities=24%  Similarity=0.270  Sum_probs=160.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~e   75 (379)
                      ..||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+|+.++||||+++++++.         .+|+++|
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e  114 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTH  114 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEE
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEec
Confidence            4899999999999999999999885544322    23456889999999999999999999863         3699999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      + +++|...                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.... 
T Consensus       115 ~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givH~Dlkp~NIll~~~---~~~kL~DFG~a~~~~~-  184 (367)
T 2fst_X          115 LMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS------ADIIHRDLKPSNLAVNED---CELKILDFGLARHTAD-  184 (367)
T ss_dssp             CCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECC----------
T ss_pred             ccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCHhhEEECCC---CCEEEeeccccccccc-
Confidence            9 5555443                   67888888      999999999999999975   8999999999987533 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC--------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF--------------  185 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~--------------  185 (379)
                       .....+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......              
T Consensus       185 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~  263 (367)
T 2fst_X          185 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR  263 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHH
T ss_pred             -cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHH
Confidence             24567899999999                99999999999999999988877776664421110              


Q ss_pred             ---------C----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         186 ---------P----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       186 ---------~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                               +    ...+..+++.+.+||.+||..||.+|||+.|+|+||||.........+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~~~~~  325 (367)
T 2fst_X          264 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEP  325 (367)
T ss_dssp             HHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCGGGCC
T ss_pred             HHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCCCCCC
Confidence                     1    112346789999999999999999999999999999999876555443

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.6e-38  Score=302.13  Aligned_cols=214  Identities=24%  Similarity=0.329  Sum_probs=179.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc--------cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN--------VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--------~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||+|+||.||+|.+..+++.||+ |...        ....+.+.+|+.+++.++||||+++++++.+   .|++|||
T Consensus        31 ~~~lG~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~  109 (345)
T 3hko_A           31 KGAIGQGSYGVVRVAIENQTRAIRAI-KIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMEL  109 (345)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cceeeecCCeEEEEEEECCCCceEEE-eehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeC
Confidence            34899999999999999999998884 4432        2334679999999999999999999998765   7999999


Q ss_pred             --CchhhHH------------------------------------------------------------HHHHHHhcccC
Q psy6046          77 --RPPVYQA------------------------------------------------------------SATTKAGSVLF   94 (379)
Q Consensus        77 --~g~l~~~------------------------------------------------------------~al~~lh~~~~   94 (379)
                        +|+|.+.                                                            .|+.|||+   
T Consensus       110 ~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---  186 (345)
T 3hko_A          110 CHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN---  186 (345)
T ss_dssp             CCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH---
Confidence              6655321                                                            57888888   


Q ss_pred             CCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-----cccccccCCCCcch-----------------HH
Q psy6046          95 PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-----EIRELLGTPDYVGK-----------------SL  152 (379)
Q Consensus        95 ~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-----~~~~~~gt~~y~aP-----------------Sl  152 (379)
                         +||+||||||+||+++.++ ...+||+|||+++.+....     ......||+.|+||                 |+
T Consensus       187 ---~~ivH~Dlkp~NIll~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diwsl  262 (345)
T 3hko_A          187 ---QGICHRDIKPENFLFSTNK-SFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSA  262 (345)
T ss_dssp             ---TTEECCCCCGGGEEESCSS-SCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHH
T ss_pred             ---CCccccCCChhhEEEecCC-CceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHH
Confidence               9999999999999998641 2489999999998764321     23456799999999                 99


Q ss_pred             HHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         153 GVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       153 Gvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ||++|+|++|+.||.+.+..+....+......++.+.+..+++.+.+||.+||..||.+|||+.++|+||||++..+
T Consensus       263 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          263 GVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             HHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            99999999999999999999999999888888877777789999999999999999999999999999999987654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=5.9e-38  Score=301.03  Aligned_cols=214  Identities=21%  Similarity=0.264  Sum_probs=173.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e~-   76 (379)
                      ..||+|+||.||+|++..+++.||+++....   .....+.+|+.+++.++||||+++++++.        ..|+++|+ 
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~  112 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLM  112 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECC
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEccc
Confidence            4899999999999999999988885444322   22356889999999999999999999864        36899999 


Q ss_pred             CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          77 RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      .|+|++.                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....... 
T Consensus       113 ~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~a~~~~~~~~  183 (364)
T 3qyz_A          113 ETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHS------ANVLHRDLKPSNLLLNTT---CDLKICDFGLARVADPDHD  183 (364)
T ss_dssp             SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECCGGGC
T ss_pred             CcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCChHhEEECCC---CCEEEEeCcceEecCCCCC
Confidence            7777664                   67888888      999999999999999875   899999999998765332 


Q ss_pred             ---cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-----------
Q psy6046         137 ---EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-----------  186 (379)
Q Consensus       137 ---~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-----------  186 (379)
                         .....+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+           
T Consensus       184 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  263 (364)
T 3qyz_A          184 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLK  263 (364)
T ss_dssp             BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHH
T ss_pred             ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhh
Confidence               23456899999999                999999999999999998887766666543111110           


Q ss_pred             ----------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         187 ----------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       187 ----------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                      ...++.+++++.+||.+||..||.+|||+.|+|+||||++.....
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~~~  324 (364)
T 3qyz_A          264 ARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPS  324 (364)
T ss_dssp             HHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCCGG
T ss_pred             HHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhccCcc
Confidence                            112356799999999999999999999999999999999875443

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=296.88  Aligned_cols=217  Identities=21%  Similarity=0.253  Sum_probs=167.5

Q ss_pred             ccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           5 PMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         5 ~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      +-..+.||+|+||.||+|++..+|+.||+++......    ...+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus         5 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (311)
T 4agu_A            5 YEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYC   84 (311)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             ceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeC
Confidence            3345689999999999999999999998654433322    3457899999999999999999998765   7999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       ++.+...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A           85 DHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHK------HNCIHRDVKPENILITKH---SVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             SEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECC--
T ss_pred             CCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH------CCCcCCCCChhhEEEcCC---CCEEEeeCCCchhccCc
Confidence             4444333                    67888888      999999999999999875   89999999999876533


Q ss_pred             c-cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC---------------
Q psy6046         136 I-EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL---------------  183 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~---------------  183 (379)
                      . .....+||+.|+||                |+|+++|+|++|.+||.+.+..+....+.....               
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (311)
T 4agu_A          156 SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQY  235 (311)
T ss_dssp             ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred             ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccc
Confidence            2 34556899999999                999999999999999999887776655543211               


Q ss_pred             ----CCCc--------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         184 ----DFPD--------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       184 ----~~~~--------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                          ..+.        ..++.+++++.+||.+||..||.+|||++|+++||||++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  294 (311)
T 4agu_A          236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREI  294 (311)
T ss_dssp             GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC--
T ss_pred             cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccCH
Confidence                1110        1224689999999999999999999999999999999887643

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.7e-38  Score=299.40  Aligned_cols=213  Identities=26%  Similarity=0.417  Sum_probs=177.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~   74 (379)
                      .+.||+|+||.||+|++..+|+.||+ |.....           ....+.+|+.+++.++||||+++++++..  +|+++
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~   93 (322)
T 2ycf_A           15 SKTLGSGACGEVKLAFERKTCKKVAI-KIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVL   93 (322)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEE-EEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             eeEEecCCCEEEEEEEEcCCCcEEEE-EEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEE
Confidence            35899999999999999999988884 544321           12358899999999999999999998654  89999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +|+|.+.                    .|+.|||+      +||+||||||+||+++..+....+||+|||+++..
T Consensus        94 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  167 (322)
T 2ycf_A           94 ELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHE------NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  167 (322)
T ss_dssp             ECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred             ecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence            99  6677665                    67888888      99999999999999987644456999999999887


Q ss_pred             ccCccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCCCCcccccCC
Q psy6046         133 LDGIEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       133 ~~~~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      .........+||+.|+||                  |+||++|+|++|..||.+... ......+..+...+.+..+..+
T Consensus       168 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (322)
T 2ycf_A          168 GETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV  247 (322)
T ss_dssp             CCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTS
T ss_pred             ccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhc
Confidence            655445567899999999                  999999999999999976543 2455666777777766677789


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ++.+.+||.+||..||.+|||+.++++||||.+.
T Consensus       248 ~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~  281 (322)
T 2ycf_A          248 SEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE  281 (322)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCH
T ss_pred             CHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCH
Confidence            9999999999999999999999999999999754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=5.5e-38  Score=296.29  Aligned_cols=208  Identities=19%  Similarity=0.311  Sum_probs=175.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      .||+|+||.||+|++..+|+.||+ |....   ...+.+.+|+.+++.++||||+++++++..   .|++|||  +|+|.
T Consensus        52 ~lg~G~~g~V~~a~~~~~g~~vav-K~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~  130 (321)
T 2c30_A           52 KIGEGSTGIVCLAREKHSGRQVAV-KMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALT  130 (321)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEE-EEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHH
T ss_pred             EeccCCCeEEEEEEECCCCcEEEE-EEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHH
Confidence            799999999999999999999885 44332   334668999999999999999999998654   8999999  66666


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      +.                   .|+.|||+      .||+||||||+||+++.+   +.+||+|||++....... .....
T Consensus       131 ~~l~~~~l~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~~~~~~~~~~~~~~~  201 (321)
T 2c30_A          131 DIVSQVRLNEEQIATVCEAVLQALAYLHA------QGVIHRDIKSDSILLTLD---GRVKLSDFGFCAQISKDVPKRKSL  201 (321)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECCSSSCCBCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEECCC---CcEEEeeeeeeeecccCccccccc
Confidence            55                   67888888      999999999999999875   899999999998765432 34557


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +||+.|+||               |+|+++|+|++|..||.+.+..+....+.....+.. .....+++.+.+||.+||.
T Consensus       202 ~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~  280 (321)
T 2c30_A          202 VGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKL-KNSHKVSPVLRDFLERMLV  280 (321)
T ss_dssp             CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-TTGGGSCHHHHHHHHHHSC
T ss_pred             cCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCc-CccccCCHHHHHHHHHHcc
Confidence            899999999               999999999999999999888888887776643322 1234689999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||++|||+.++++||||.+..
T Consensus       281 ~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          281 RDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             SSTTTSCCHHHHHTSGGGGGCC
T ss_pred             CChhhCcCHHHHhcChhhccCC
Confidence            9999999999999999997654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.8e-38  Score=295.51  Aligned_cols=213  Identities=31%  Similarity=0.445  Sum_probs=181.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .+.||+|+||.||+|++..+|+.||+ |....   .....+.+|+.+++.++||||+++++++.+   +|+++|+  +|+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   92 (304)
T 2jam_A           14 MEVLGSGAFSEVFLVKQRLTGKLFAL-KCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGE   92 (304)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEE-EEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             eeeccCCCCceEEEEEECCCCCEEEE-EEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCcc
Confidence            35899999999999999999998885 44332   234568899999999999999999998765   7999999  677


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |.+.                    .|+.|||+      +||+||||||+||++...+.++.+||+|||++...... ...
T Consensus        93 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-~~~  165 (304)
T 2jam_A           93 LFDRILERGVYTEKDASLVIQQVLSAVKYLHE------NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-IMS  165 (304)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-TTH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-ccc
Confidence            7665                    67888888      99999999999999954333589999999999764332 344


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+||+.|+||               |+|+++|+|++|..||.+.+..+....+..+...++...+..+++++.+||.+|
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  245 (304)
T 2jam_A          166 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHL  245 (304)
T ss_dssp             HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHH
T ss_pred             cccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHH
Confidence            56799999999               999999999999999999999999999999888887777788999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||++++++||||.+..
T Consensus       246 l~~dp~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          246 LEKDPNERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             HCSSTTTSCCHHHHHTSHHHHSSC
T ss_pred             cCCChhHCcCHHHHhcCccccCCC
Confidence            999999999999999999997654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=4.2e-38  Score=293.02  Aligned_cols=211  Identities=26%  Similarity=0.381  Sum_probs=183.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc------------cchHHHHHHHHHHhCC-CCCcceeeeecCc---ceE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS------------QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------------~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~   72 (379)
                      +.||+|+||.||+|.+..+|+.||+ |.....            ..+.+.+|+.+++.+. ||||+++++++.+   .|+
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (298)
T 1phk_A           23 EILGRGVSSVVRRCIHKPTCKEYAV-KIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFL  101 (298)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEE-EEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             eeecCCCceEEEEEEEcCcCceEEE-EEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEE
Confidence            4899999999999999999998884 544321            1356889999999996 9999999998765   799


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ++|+  +|+|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.
T Consensus       102 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~dfg~~~  172 (298)
T 1phk_A          102 VFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHK------LNIVHRDLKPENILLDDD---MNIKLTDFGFSC  172 (298)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTTCE
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCcceEEEcCC---CcEEEecccchh
Confidence            9999  6777665                    67888888      999999999999999875   889999999998


Q ss_pred             eeccCccccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc
Q psy6046         131 VILDGIEIRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~  189 (379)
                      ............||+.|+||                     |+|+++|+|++|..||.+.+..+....+..+...++.+.
T Consensus       173 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  252 (298)
T 1phk_A          173 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPE  252 (298)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTT
T ss_pred             hcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCccc
Confidence            87666556667899999998                     999999999999999999998888888888888877766


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      +..+++.+.+||.+||..||.+|||+.++++||||++...
T Consensus       253 ~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~  292 (298)
T 1phk_A          253 WDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYVV  292 (298)
T ss_dssp             GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC-
T ss_pred             ccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhccc
Confidence            7789999999999999999999999999999999987653

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1e-38  Score=302.24  Aligned_cols=214  Identities=19%  Similarity=0.154  Sum_probs=164.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ..||+|+||.||+|++..+|+.||+ |.....     ....+.+|+.+++.++||||+++++++.+   +|+++|| .|+
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  118 (329)
T 3gbz_A           40 TKLGEGTYGEVYKAIDTVTNETVAI-KRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAEND  118 (329)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEE-EECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             EEEEecCCeEEEEEEECCCCceEEE-EEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCCCC
Confidence            4899999999999999999998884 544321     13457899999999999999999998765   8999999 666


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC--CCCcEEEeecccceeeccC-c
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF--PNCDIKVCDFEISRVILDG-I  136 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~--~~~~ikl~DFG~a~~~~~~-~  136 (379)
                      |.+.                    .|+.|||+      +||+||||||+|||++.++  ..+.+||+|||+++..... .
T Consensus       119 L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~  192 (329)
T 3gbz_A          119 LKKYMDKNPDVSMRVIKSFLYQLINGVNFCHS------RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIR  192 (329)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC----
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh------CCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCccc
Confidence            6655                    67888888      9999999999999996431  2367999999999765432 2


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc-----------
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL-----------  189 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~-----------  189 (379)
                      .....+||+.|+||                |+||++|+|++|.+||.+.+..+.+..+.......+...           
T Consensus       193 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (329)
T 3gbz_A          193 QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWK  272 (329)
T ss_dssp             -------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhh
Confidence            34556789999999                999999999999999999888877776654311111111           


Q ss_pred             ---------------ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         190 ---------------FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       190 ---------------~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                     ...+++++.+||.+||..||.+|||++|+|+||||++..+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  327 (329)
T 3gbz_A          273 QSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDF  327 (329)
T ss_dssp             TTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCS
T ss_pred             hhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCC
Confidence                           1126899999999999999999999999999999998764

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.6e-38  Score=316.45  Aligned_cols=210  Identities=20%  Similarity=0.277  Sum_probs=178.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      .+||+|+||.||+|+++.+|+.||+ |....      .....+.+|+.+|+.++||||+++++++.+   +|++|||  +
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAi-K~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~g  269 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYAC-KKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNG  269 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEE-EEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccC
Confidence            3799999999999999999999885 44432      234568899999999999999999998765   8999999  6


Q ss_pred             chhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          78 PPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        78 g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |+|...                        .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++...
T Consensus       270 g~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~------~gIvHrDLKP~NILl~~~---g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          270 GDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ------RNIIYRDLKPENVLLDDD---GNVRISDLGLAVELK  340 (543)
T ss_dssp             CBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---SCEEECCCTTCEECC
T ss_pred             CCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH------cCCcccCCChHHEEEeCC---CCEEEeecceeeecc
Confidence            777543                        67888888      999999999999999985   899999999998875


Q ss_pred             cCcc-ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC----ChHHHHHHHHhCCCCCCcccccCC
Q psy6046         134 DGIE-IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       134 ~~~~-~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~----~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      .... ....+||+.|+||               |+||++|+|++|++||.+.    ...++...+......+|.    .+
T Consensus       341 ~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~----~~  416 (543)
T 3c4z_A          341 AGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD----KF  416 (543)
T ss_dssp             TTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCT----TS
T ss_pred             CCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCc----cc
Confidence            5433 3456899999999               9999999999999999875    346777788877776664    58


Q ss_pred             CHHHHHHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         194 SPEAKDFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      |+++.+||.+||..||.+||+     ++++++||||++..|...
T Consensus       417 s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l  460 (543)
T 3c4z_A          417 SPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL  460 (543)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHH
T ss_pred             CHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHH
Confidence            999999999999999999995     589999999999887654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.6e-38  Score=293.66  Aligned_cols=216  Identities=31%  Similarity=0.475  Sum_probs=180.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      .+.||+|+||.||+|++..+|+.||++.....        ...+.+.+|+.+++.++||||+++++++.+   .|+++|+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   89 (283)
T 3bhy_A           10 GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILEL   89 (283)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             HHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEee
Confidence            35899999999999999999999885333221        124668999999999999999999998764   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC-CCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF-PNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~-~~~~ikl~DFG~a~~~~  133 (379)
                        +++|.+.                    .|+.|||+      +||+||||||+||+++.++ ++..+||+|||++....
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~  163 (283)
T 3bhy_A           90 VSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHS------KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE  163 (283)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCChHHEEEecCCCCCCceEEEecccceecc
Confidence              6777665                    67888888      9999999999999998762 23489999999998876


Q ss_pred             cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .........||+.|+||               |+|+++|+|++|..||.+.+..+....+......++...+..+++.+.
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (283)
T 3bhy_A          164 AGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAK  243 (283)
T ss_dssp             --------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHH
T ss_pred             CCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHH
Confidence            55555667899999999               999999999999999999999889999888888777777778999999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      +||.+||..||.+|||+.++++||||+...+
T Consensus       244 ~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          244 DFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             HHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             HHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence            9999999999999999999999999987653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=2.5e-38  Score=292.03  Aligned_cols=207  Identities=27%  Similarity=0.385  Sum_probs=173.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ....||+|+||.||+|.+..++..||+ |....      .....+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (279)
T 3fdn_A           13 IGRPLGKGKFGNVYLAREKQSKFILAL-KVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYA   91 (279)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EeeEEecCCCeEEEEEEEccCCcEEEE-EEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecC
Confidence            345899999999999999999988884 54322      223568899999999999999999998765   7999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|++...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        92 ~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~i~H~dlkp~Nili~~~---~~~~l~Dfg~~~~~~~~  162 (279)
T 3fdn_A           92 PLGTVYRELQKLSKFDEQRTATYITELANALSYCHS------KRVIHRDIKPENLLLGSA---GELKIADFGWSVHAPSS  162 (279)
T ss_dssp             TTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT------TTCEECCCCGGGEEECTT---SCEEECSCCEESCC---
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCEecccCChHhEEEcCC---CCEEEEeccccccCCcc
Confidence             6676654                    56778887      999999999999999875   89999999998654333


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       ......||+.|+||               |+|+++|+|++|..||.+.+..+....+......+|.    .+++.+.+|
T Consensus       163 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l  237 (279)
T 3fdn_A          163 -RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD----FVTEGARDL  237 (279)
T ss_dssp             ------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCT----TSCHHHHHH
T ss_pred             -cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCC----cCCHHHHHH
Confidence             33556899999999               9999999999999999999999999988888777664    479999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||+.|+++||||+...
T Consensus       238 i~~~l~~~p~~Rps~~e~l~h~~~~~~~  265 (279)
T 3fdn_A          238 ISRLLKHNPSQRPMLREVLEHPWITANS  265 (279)
T ss_dssp             HHHHCCSSGGGSCCHHHHHHCHHHHHHC
T ss_pred             HHHHhccChhhCCCHHHHhhCccccCCc
Confidence            9999999999999999999999998654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.3e-37  Score=299.64  Aligned_cols=214  Identities=23%  Similarity=0.237  Sum_probs=170.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~   74 (379)
                      ...||+|+||.||+|.+..+|+.||+++....    .....+.+|+.+++.++||||+++++++..         +|+++
T Consensus        47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  126 (371)
T 4exu_A           47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  126 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEE
T ss_pred             EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEE
Confidence            34799999999999999999999885444332    123568899999999999999999998753         39999


Q ss_pred             eC-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          75 NP-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        75 e~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      || .|.+...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... 
T Consensus       127 e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NIll~~~---~~~kL~Dfg~a~~~~~-  196 (371)
T 4exu_A          127 PFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHS------AGVVHRDLKPGNLAVNED---CELKILDFGLARHADA-  196 (371)
T ss_dssp             ECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECSTTCC------
T ss_pred             ccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH------CCCcCCCcCHHHeEECCC---CCEEEEecCccccccc-
Confidence            99 6665554                  67888888      999999999999999975   8999999999986533 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-------------  186 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-------------  186 (379)
                       .....+||+.|+||                |+||++|+|++|+.||.+.+..+.+..+.......+             
T Consensus       197 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  275 (371)
T 4exu_A          197 -EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  275 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHH
T ss_pred             -CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhh
Confidence             34557889999999                999999999999999999887777766643211110             


Q ss_pred             --------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         187 --------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       187 --------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                    ...++.+++.+.+||.+||..||.+|||+.|+|+||||+.......
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~  335 (371)
T 4exu_A          276 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEE  335 (371)
T ss_dssp             HHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCGGG
T ss_pred             hhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCCccc
Confidence                          1123467999999999999999999999999999999997664443

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=5.4e-38  Score=296.61  Aligned_cols=212  Identities=21%  Similarity=0.266  Sum_probs=171.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc-----ceEEeeC--Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE-----PLLGLNP--RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~-----~~~v~e~--~g~   79 (379)
                      .+.||+|+||.||+|++..+|+.|| +|.........+.+|+.+++.++ ||||+++++++.+     .++++|+  ++.
T Consensus        41 ~~~lg~G~~g~V~~~~~~~~~~~va-vK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~  119 (330)
T 3nsz_A           41 VRKLGRGKYSEVFEAINITNNEKVV-VKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTD  119 (330)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEE-EEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCC
T ss_pred             EEEecccCCeEEEEEEECCCCcEEE-EEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchh
Confidence            3489999999999999999998888 67666666788999999999998 9999999998654     6899999  565


Q ss_pred             hhHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccccc
Q psy6046          80 VYQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL  142 (379)
Q Consensus        80 l~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~  142 (379)
                      +...                 .|+.|||+      +||+||||||+|||++.+  +..+||+|||+++...........+
T Consensus       120 l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dikp~Nil~~~~--~~~~kl~Dfg~a~~~~~~~~~~~~~  191 (330)
T 3nsz_A          120 FKQLYQTLTDYDIRFYMYEILKALDYCHS------MGIMHRDVKPHNVMIDHE--HRKLRLIDWGLAEFYHPGQEYNVRV  191 (330)
T ss_dssp             HHHHGGGCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEETT--TTEEEECCCTTCEECCTTCCCCSCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHEEEcCC--CCEEEEEeCCCceEcCCCCcccccc
Confidence            5544                 67888888      999999999999999865  2489999999998876666666778


Q ss_pred             cCCCCcch----------------HHHHHHHHHhhCCCCCCC-CChHHHHHH-------------HHhCCCCCCc-----
Q psy6046         143 GTPDYVGK----------------SLGVTAYVLLTGFSPFGG-ETDSETFRN-------------ISKAQLDFPD-----  187 (379)
Q Consensus       143 gt~~y~aP----------------SlGvil~~lltg~~Pf~~-~~~~~~~~~-------------i~~~~~~~~~-----  187 (379)
                      ||+.|+||                |+||++|+|++|..||.. .+..+.+..             +.......++     
T Consensus       192 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
T 3nsz_A          192 ASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI  271 (330)
T ss_dssp             SCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHH
T ss_pred             ccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhh
Confidence            99999999                999999999999999954 333332222             2222222211     


Q ss_pred             ---------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 ---------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 ---------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                     .....+++++.+||.+||..||.+|||++|+|+||||++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~  327 (330)
T 3nsz_A          272 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVV  327 (330)
T ss_dssp             HCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             hhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhc
Confidence                           11123799999999999999999999999999999998765

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=3.8e-38  Score=292.16  Aligned_cols=213  Identities=25%  Similarity=0.431  Sum_probs=184.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|++..+++.||+ |....     .....+.+|+.+++.++||||+++++++.+   +|+++|+  ++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~val-K~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  106 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAV-KVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEE-EEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCC
Confidence            4899999999999999999998885 44322     234678999999999999999999998764   7999999  66


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ++.+.                    .|+.|||+      +||+||||||+||+++..+..+.+||+|||++.........
T Consensus       107 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~  180 (287)
T 2wei_A          107 ELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK------HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM  180 (287)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSC
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCcc
Confidence            66554                    67888888      99999999999999987644568999999999876555555


Q ss_pred             cccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         139 RELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ....||+.|+||              |+|+++|+|++|..||.+.+..+....+..+...++.+.+..+|+++.+||.+|
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  260 (287)
T 2wei_A          181 KDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKM  260 (287)
T ss_dssp             SCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHH
T ss_pred             ccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHH
Confidence            566789999999              999999999999999999999999999998888777666778999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||+.++++||||++..
T Consensus       261 l~~dp~~Rps~~ell~hp~~~~~~  284 (287)
T 2wei_A          261 LTFHPSLRITATQCLEHPWIQKYS  284 (287)
T ss_dssp             TCSSGGGSCCHHHHHHSHHHHHHC
T ss_pred             cccChhhCcCHHHHhcCHHHhccc
Confidence            999999999999999999997654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=7.7e-38  Score=298.33  Aligned_cols=218  Identities=24%  Similarity=0.349  Sum_probs=171.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---cchHHHHHHHHHHhCCCCCcceeeeecC--------cceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---QGVVIVDEEQLLKLIKVEPIEKYYSLDP--------EPLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---~~~~~~~E~~il~~l~hpnIv~~~~~~~--------~~~~v~e~   76 (379)
                      ...||+|+||.||+|++..+|+.||++......   ....+.+|+.+++.++||||+++++++.        ..|+++|+
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~   95 (353)
T 2b9h_A           16 KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQEL   95 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECC
T ss_pred             eeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEec
Confidence            348999999999999999999988854432221   2345789999999999999999998754        26999999


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                       .|.|...                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus        96 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~------~~ivH~Dlkp~Nil~~~~---~~~kl~Dfg~a~~~~~~~  166 (353)
T 2b9h_A           96 MQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG------SNVIHRDLKPSNLLINSN---CDLKVCDFGLARIIDESA  166 (353)
T ss_dssp             CSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT---CCEEECCCTTCEECC---
T ss_pred             cCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEEcCC---CcEEEEeccccccccccc
Confidence             6666554                   67888888      999999999999999875   899999999998764321


Q ss_pred             -----------cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC--CC----
Q psy6046         137 -----------EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA--QL----  183 (379)
Q Consensus       137 -----------~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~--~~----  183 (379)
                                 .....+||+.|+||                |+||++|+|++|.+||.+.+..+.+..+...  ..    
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  246 (353)
T 2b9h_A          167 ADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDN  246 (353)
T ss_dssp             -------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTT
T ss_pred             ccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhc
Confidence                       12335789999999                9999999999999999998876655544321  00    


Q ss_pred             ------------------CCC----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccccc
Q psy6046         184 ------------------DFP----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRV  234 (379)
Q Consensus       184 ------------------~~~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~  234 (379)
                                        ..+    ...++.+++++.+||.+||..||++|||+.++++||||+.........
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~~~  319 (353)
T 2b9h_A          247 DLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDEP  319 (353)
T ss_dssp             TTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTTSSC
T ss_pred             cccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCccccc
Confidence                              000    122357899999999999999999999999999999999877554433

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=6e-38  Score=303.56  Aligned_cols=212  Identities=15%  Similarity=0.141  Sum_probs=164.2

Q ss_pred             cCcCCC--CceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNR--ARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G--~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +.||+|  +||.||+|++..+|+.||++.....    .....+.+|+.+++.++||||+++++++.+   +|+++||  +
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  110 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY  110 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCC
Confidence            489999  9999999999999999885433222    223568889999999999999999998765   8999999  6


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|.+.                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||.+......
T Consensus       111 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivHrDlkp~NIll~~~---~~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          111 GSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHH------MGYVHRSVKASHILISVD---GKVYLSGLRSNLSMISH  181 (389)
T ss_dssp             CBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCGGGCEECEET
T ss_pred             CCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEcCC---CCEEEcccccceeeccc
Confidence            666654                      67888888      999999999999999875   89999999998765322


Q ss_pred             c--------cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC------
Q psy6046         136 I--------EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD------  184 (379)
Q Consensus       136 ~--------~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~------  184 (379)
                      .        .....+||+.|+||                 |+||++|+|++|++||.+.+..+....+..+..+      
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  261 (389)
T 3gni_B          182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTS  261 (389)
T ss_dssp             TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC------------
T ss_pred             cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccc
Confidence            1        12335789999999                 9999999999999999876655444433322211      


Q ss_pred             ------------------------------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         185 ------------------------------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       185 ------------------------------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                                          .....+..+++++.+||.+||..||++|||++|+|+||||++..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~  341 (389)
T 3gni_B          262 TIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  341 (389)
T ss_dssp             --------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC-
T ss_pred             ccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHh
Confidence                                                00123346899999999999999999999999999999998765


Q ss_pred             c
Q psy6046         229 Q  229 (379)
Q Consensus       229 ~  229 (379)
                      +
T Consensus       342 ~  342 (389)
T 3gni_B          342 R  342 (389)
T ss_dssp             -
T ss_pred             h
Confidence            4

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=2.3e-37  Score=295.43  Aligned_cols=206  Identities=17%  Similarity=0.170  Sum_probs=171.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      +.||+|+||.||+|++..+|+.||+++....     .....+.+|+.+++.++||||+++++++.+   .|+++|| .|.
T Consensus        60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~g~  139 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGS  139 (348)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCCCC
Confidence            3799999999999999999998885443322     123568899999999999999999998654   8999999 555


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||++.....   .
T Consensus       140 l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kL~DfG~a~~~~~---~  207 (348)
T 1u5q_A          140 ASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS------HNMIHRDVKAGNILLSEP---GLVKLGDFGSASIMAP---A  207 (348)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCSGGGEEEETT---TEEEECCCTTCBSSSS---B
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHEEECCC---CCEEEeeccCceecCC---C
Confidence            5443                     67888888      999999999999999975   8999999999976532   3


Q ss_pred             cccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 RELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 ~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...+||+.|+||                  |+||++|+|++|.+||.+.+..+....+..+..+..  ....+++.+.+|
T Consensus       208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l  285 (348)
T 1u5q_A          208 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL--QSGHWSEYFRNF  285 (348)
T ss_dssp             CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--CCTTSCHHHHHH
T ss_pred             CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC--CCCCCCHHHHHH
Confidence            456899999999                  999999999999999998888777777766543322  224689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||++++++||||....
T Consensus       286 i~~~l~~dP~~Rps~~~ll~h~~~~~~~  313 (348)
T 1u5q_A          286 VDSCLQKIPQDRPTSEVLLKHRFVLRER  313 (348)
T ss_dssp             HHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             HHHHcccChhhCcCHHHHhhChhhhccC
Confidence            9999999999999999999999997654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.1e-37  Score=287.51  Aligned_cols=208  Identities=17%  Similarity=0.245  Sum_probs=167.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~-   76 (379)
                      ..||+|+||.||+|.+..++..||++.....    .....+.+|+.+++.++||||+++++++..       +|+++|| 
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~  111 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELM  111 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECC
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEec
Confidence            3799999999999999999998885443322    234568999999999999999999987643       7899999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                       +|+|.+.                    .|+.|||+      .|  |+||||||+||+++.+  ++.+||+|||++....
T Consensus       112 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~~~i~H~dikp~Nil~~~~--~~~~kl~Dfg~~~~~~  183 (290)
T 1t4h_A          112 TSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT------RTPPIIHRDLKCDNIFITGP--TGSVKIGDLGLATLKR  183 (290)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT------SSSCCCCSCCCGGGEEESST--TSCEEECCTTGGGGCC
T ss_pred             CCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHc------CCCCEEECCCCHHHEEEECC--CCCEEEeeCCCccccc
Confidence             6677665                    56778887      99  9999999999999843  3799999999996543


Q ss_pred             cCccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .. ......||+.|+||              |+|+++|+|++|..||.+.. .......+..+..  +.......++++.
T Consensus       184 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  260 (290)
T 1t4h_A          184 AS-FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK--PASFDKVAIPEVK  260 (290)
T ss_dssp             TT-SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC--CGGGGGCCCHHHH
T ss_pred             cc-ccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCC--ccccCCCCCHHHH
Confidence            32 34556799999999              99999999999999998744 4445555544432  3334456789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      +||.+||..||.+|||++++++||||++.
T Consensus       261 ~li~~~l~~dp~~Rps~~ell~h~~f~~~  289 (290)
T 1t4h_A          261 EIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             HHHHHHccCChhhCCCHHHHhhCcccccC
Confidence            99999999999999999999999999753

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.3e-38  Score=300.02  Aligned_cols=208  Identities=22%  Similarity=0.188  Sum_probs=168.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC-----CCCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK-----VEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~-----hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      +.||+|+||.||+|++..+|+.|| +|....  .....+..|+.+++.+.     ||||+++++++..   .|+++|+ +
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~va-vK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~  119 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYA-VKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPLG  119 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEE-EEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCCC
T ss_pred             EEEcccCCeEEEEEEECCCCeEEE-EEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCCC
Confidence            489999999999999999999888 455443  23456788999999997     9999999998654   8999999 6


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec--------------------
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD--------------------  115 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~--------------------  115 (379)
                      |+|.+.                      .|+.|||+      +||+||||||+|||++..                    
T Consensus       120 ~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~  193 (360)
T 3llt_A          120 PSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK------MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQI  193 (360)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEE
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeCCCCcccEEEccccccccccchhcccccccccc
Confidence            666655                      67888888      999999999999999751                    


Q ss_pred             --CCCCcEEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHH
Q psy6046         116 --FPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNI  178 (379)
Q Consensus       116 --~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i  178 (379)
                        ...+.+||+|||+++....  .....+||+.|+||               |+||++|+|++|+.||.+.+..+.+..+
T Consensus       194 ~~~~~~~~kl~DFG~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~  271 (360)
T 3llt_A          194 YRTKSTGIKLIDFGCATFKSD--YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMM  271 (360)
T ss_dssp             EEESCCCEEECCCTTCEETTS--CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             cccCCCCEEEEeccCceecCC--CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHH
Confidence              1147899999999986433  34567899999999               9999999999999999998888777776


Q ss_pred             HhCCCCCCccc------------------------------------------ccCCCHHHHHHHHHhcccCCCCCCCHH
Q psy6046         179 SKAQLDFPDEL------------------------------------------FEDISPEAKDFIAKILIKNPMERMTAK  216 (379)
Q Consensus       179 ~~~~~~~~~~~------------------------------------------~~~~s~~~~~li~~~L~~dP~~Rpt~~  216 (379)
                      ......+|...                                          ....++.+.+||.+||..||++|||+.
T Consensus       272 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~  351 (360)
T 3llt_A          272 ESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPA  351 (360)
T ss_dssp             HHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHH
Confidence            65444333211                                          011247788999999999999999999


Q ss_pred             HHhcCcccc
Q psy6046         217 EALKHPWLM  225 (379)
Q Consensus       217 e~l~hp~~~  225 (379)
                      |+|+||||+
T Consensus       352 elL~hp~f~  360 (360)
T 3llt_A          352 ELLKHKFLE  360 (360)
T ss_dssp             HHTTSGGGC
T ss_pred             HHhcCcccC
Confidence            999999995

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.8e-37  Score=286.97  Aligned_cols=206  Identities=26%  Similarity=0.345  Sum_probs=176.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++..+++.||+ |....      .....+.+|+.+++.++||||+++++++.+   .|+++|+  
T Consensus        19 ~~~lg~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   97 (284)
T 2vgo_A           19 GRPLGKGKFGNVYLAREKQNKFIMAL-KVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAP   97 (284)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             eheecCCCCeEEEEEEEcCCCcEEEE-EEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCC
Confidence            34899999999999999999988884 54422      123568999999999999999999998764   7999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... 
T Consensus        98 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~Dfg~~~~~~~~-  167 (284)
T 2vgo_A           98 RGELYKELQKHGRFDEQRSATFMEELADALHYCHE------RKVIHRDIKPENLLMGYK---GELKIADFGWSVHAPSL-  167 (284)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECSSS-
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCHHHEEEcCC---CCEEEecccccccCccc-
Confidence            6677655                    56778887      999999999999999875   89999999999765432 


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      ......|++.|+||               |+|+++|+|++|..||.+.+..+....+......+|.    .+++++.+||
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li  243 (284)
T 2vgo_A          168 RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPP----FLSDGSKDLI  243 (284)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT----TSCHHHHHHH
T ss_pred             ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCC----cCCHHHHHHH
Confidence            34556799999999               9999999999999999998888888888887766654    5899999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||..||.+|||++++++||||+...
T Consensus       244 ~~~l~~~p~~Rps~~~ll~h~~~~~~~  270 (284)
T 2vgo_A          244 SKLLRYHPPQRLPLKGVMEHPWVKANS  270 (284)
T ss_dssp             HHHSCSSGGGSCCHHHHHTCHHHHHHC
T ss_pred             HHHhhcCHhhCCCHHHHhhCHHHHhhc
Confidence            999999999999999999999998654

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1e-37  Score=305.97  Aligned_cols=208  Identities=20%  Similarity=0.229  Sum_probs=165.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhC------CCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLI------KVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l------~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++||+|+||.||+|.+..+++.||+ |......  ...+.+|+.+++.+      +||||+++++.+..   +|+++|| 
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAv-K~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~  181 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVAL-KMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL  181 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEE-EEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCC
T ss_pred             EEcccCccEEEEEEEECCCCcEEEE-EEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEecc
Confidence            4899999999999999999988884 5544322  35678899998888      57799999988653   8999999 


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCc--EEEeecccceee
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCD--IKVCDFEISRVI  132 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~--ikl~DFG~a~~~  132 (379)
                      .|.+++.                      .|+.|||+      +||+||||||+|||++.+   +.  +||+|||+++..
T Consensus       182 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlKp~NILl~~~---~~~~vkL~DFG~a~~~  252 (429)
T 3kvw_A          182 SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK------NRIIHCDLKPENILLKQQ---GRSGIKVIDFGSSCYE  252 (429)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH------HTEECSCCSGGGEEESST---TSCCEEECCCTTCEET
T ss_pred             CCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeEEccC---CCcceEEeecccceec
Confidence            6666554                      67888888      999999999999999986   44  999999999764


Q ss_pred             ccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc---------
Q psy6046         133 LDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE---------  188 (379)
Q Consensus       133 ~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~---------  188 (379)
                      .  ......+||+.|+||               |+||++|+|++|.+||.+.+..+.+..+.......+..         
T Consensus       253 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~  330 (429)
T 3kvw_A          253 H--QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAK  330 (429)
T ss_dssp             T--CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHH
T ss_pred             C--CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhh
Confidence            3  234567899999999               99999999999999999988877776654321110000         


Q ss_pred             ----------------------------------------------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         189 ----------------------------------------------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       189 ----------------------------------------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                                                                    .....++.+.+||.+||..||++|||++|+|+||
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hp  410 (429)
T 3kvw_A          331 NFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHP  410 (429)
T ss_dssp             HHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTST
T ss_pred             hccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCCh
Confidence                                                          0113478899999999999999999999999999


Q ss_pred             cccCCc
Q psy6046         223 WLMNKK  228 (379)
Q Consensus       223 ~~~~~~  228 (379)
                      ||+...
T Consensus       411 w~~~~~  416 (429)
T 3kvw_A          411 WLRRRL  416 (429)
T ss_dssp             TTC---
T ss_pred             hhccCC
Confidence            998765

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=286.46  Aligned_cols=214  Identities=18%  Similarity=0.267  Sum_probs=178.9

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeec--C---cce
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLD--P---EPL   71 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~--~---~~~   71 (379)
                      ++-..++||+|+||.||+|.+..+|+.+| +|....       .....+.+|+.+++.++||||+++++++  .   ..|
T Consensus         6 ~y~i~~~lg~G~~g~V~~~~~~~~~~~~a-vK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C            6 KYLMGDLLGEGSYGKVKEVLDSETLCRRA-VKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CBCCCCEEEECSSCEEEEEEBTTTCCEEE-EEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred             ceeEeeEEecCCCeEEEEEEECCCCcEEE-EEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence            34556799999999999999999999888 454432       2346689999999999999999999986  2   279


Q ss_pred             EEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          72 LGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        72 ~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      +++|| .|.+.+.                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||+
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~------~~i~H~dlkp~NIl~~~~---~~~kl~dfg~  155 (305)
T 2wtk_C           85 MVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS------QGIVHKDIKPGNLLLTTG---GTLKISALGV  155 (305)
T ss_dssp             EEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTT
T ss_pred             EEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCcccEEEcCC---CcEEeecccc
Confidence            99999 3333222                      67888888      999999999999999875   8999999999


Q ss_pred             ceeeccC---ccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         129 SRVILDG---IEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       129 a~~~~~~---~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      +......   .......||+.|+||                 |+|+++|+|++|..||.+.+..+....+..+...++. 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~-  234 (305)
T 2wtk_C          156 AEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPG-  234 (305)
T ss_dssp             CEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCS-
T ss_pred             ccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCC-
Confidence            9876422   223456789999999                 9999999999999999999988899998888776654 


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                         .+++.+.+||.+||..||.+|||+.++++||||+......
T Consensus       235 ---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~~  274 (305)
T 2wtk_C          235 ---DCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPA  274 (305)
T ss_dssp             ---SSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC-
T ss_pred             ---ccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCCc
Confidence               5899999999999999999999999999999998766443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=292.74  Aligned_cols=203  Identities=17%  Similarity=0.158  Sum_probs=160.3

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      .||+|+||+||+|++..+|+.||+++....    ........|+..+..+ +||||+++++++.+   +|+++|| +|++
T Consensus        64 ~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~~~~L  143 (311)
T 3p1a_A           64 RLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSL  143 (311)
T ss_dssp             EEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCCCBH
T ss_pred             eeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEeccCCCH
Confidence            799999999999999999999885443322    2223455566555554 89999999998765   8999999 6666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ...                     .|+.|||+      .||+||||||+|||++.+   +.+||+|||++..........
T Consensus       144 ~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NIll~~~---~~~kl~DFG~a~~~~~~~~~~  214 (311)
T 3p1a_A          144 QQHCEAWGASLPEAQVWGYLRDTLLALAHLHS------QGLVHLDVKPANIFLGPR---GRCKLGDFGLLVELGTAGAGE  214 (311)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECGG---GCEEECCCTTCEECC------
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCCHHHEEECCC---CCEEEccceeeeecccCCCCc
Confidence            554                     67888888      999999999999999886   899999999998876555556


Q ss_pred             ccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhc
Q psy6046         140 ELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       140 ~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  205 (379)
                      ...||+.|+||              |+||++|+|++|..||.+..   ....+..+.  .+......+++++.+||.+||
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~li~~~L  289 (311)
T 3p1a_A          215 VQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGE---GWQQLRQGY--LPPEFTAGLSSELRSVLVMML  289 (311)
T ss_dssp             CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHH---HHHHHTTTC--CCHHHHTTSCHHHHHHHHHHS
T ss_pred             ccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcc---HHHHHhccC--CCcccccCCCHHHHHHHHHHc
Confidence            67799999999              99999999999977765532   333444433  344455678999999999999


Q ss_pred             ccCCCCCCCHHHHhcCccccC
Q psy6046         206 IKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      ..||++|||++|+++||||++
T Consensus       290 ~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          290 EPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             CSSTTTSCCHHHHHTSGGGSC
T ss_pred             CCChhhCcCHHHHHhCccccC
Confidence            999999999999999999975

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=295.80  Aligned_cols=201  Identities=22%  Similarity=0.239  Sum_probs=166.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ..||+|+||.||+|+++.+|+.||++......          ....+.+|+.+++.++||||+++++++.+   +++++|
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e  109 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVME  109 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEE
Confidence            47999999999999999999988853332221          23467889999999999999999998765   789999


Q ss_pred             C--Cc-hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          76 P--RP-PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        76 ~--~g-~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      +  .| ++...                    .|+.|||.      +||+||||||+|||++.+   +.+||+|||+++..
T Consensus       110 ~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~---~~~kL~Dfg~a~~~  180 (335)
T 3dls_A          110 KHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRL------KDIIHRDIKDENIVIAED---FTIKLIDFGSAAYL  180 (335)
T ss_dssp             CCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---SCEEECCCTTCEEC
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeEEeccCHHHEEEcCC---CcEEEeecccceEC
Confidence            8  34 66655                    67888888      999999999999999875   89999999999987


Q ss_pred             ccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         133 LDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       133 ~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      .........+||+.|+||                |+||++|+|++|..||.....      ........|    ..++++
T Consensus       181 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~~~~~~~----~~~~~~  250 (335)
T 3dls_A          181 ERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------TVEAAIHPP----YLVSKE  250 (335)
T ss_dssp             CTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------GTTTCCCCS----SCCCHH
T ss_pred             CCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH------HHhhccCCC----cccCHH
Confidence            766666678899999999                999999999999999976322      112222222    258999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+||.+||..||.+|||++++++||||++..
T Consensus       251 l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          251 LMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence            99999999999999999999999999997643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.5e-37  Score=286.12  Aligned_cols=208  Identities=24%  Similarity=0.328  Sum_probs=169.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ..+.||+|+||.||+|.+..+|+.||+ |....      .....+.+|+.+++.++||||+++++++.+   .|+++|+ 
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   93 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQLTGHKVAV-KILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYV   93 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEeeecCCCCeEEEEEEECCCCceEEE-EEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEecc
Confidence            345899999999999999999998884 54432      223568999999999999999999998764   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +++|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        94 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           94 SGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHR------HMVVHRDLKPENVLLDAH---MNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------HCSSCCCCCGGGEEECTT---SCEEECCCCGGGCCCC-
T ss_pred             CCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCCccCCCChhhEEECCC---CCEEEeecccccccCCC
Confidence             6677655                    57888888      999999999999999875   89999999999877655


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .......||+.|+||                |+|+++|+|++|..||.+.+.......+..+....|.    .+++.+.+
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~  240 (276)
T 2h6d_A          165 EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPE----YLNRSVAT  240 (276)
T ss_dssp             ------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHHHHH
T ss_pred             cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCch----hcCHHHHH
Confidence            555567899999999                9999999999999999998888888888887766554    47999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|.+||..||.+|||+.++++||||++..
T Consensus       241 li~~~l~~~p~~Rps~~~~l~h~~~~~~~  269 (276)
T 2h6d_A          241 LLMHMLQVDPLKRATIKDIREHEWFKQDL  269 (276)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHSHHHHTTC
T ss_pred             HHHHHccCChhhCCCHHHHHhChhhccCc
Confidence            99999999999999999999999997654

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=8.3e-37  Score=292.44  Aligned_cols=215  Identities=19%  Similarity=0.214  Sum_probs=162.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-------------chHHHHHHHHHHhCCCCCcceeeeecC-----
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-------------GVVIVDEEQLLKLIKVEPIEKYYSLDP-----   68 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-------------~~~~~~E~~il~~l~hpnIv~~~~~~~-----   68 (379)
                      ..+.||+|+||.||+|.+.. |+.||+++......             ...+.+|+.+++.++||||+++++++.     
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  104 (362)
T 3pg1_A           26 VQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEP  104 (362)
T ss_dssp             EEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTT
T ss_pred             EeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCC
Confidence            34589999999999999865 77888544432211             256899999999999999999998862     


Q ss_pred             ---cceEEeeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          69 ---EPLLGLNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        69 ---~~~~v~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                         .+|+++|| .|.+.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||
T Consensus       105 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~NIl~~~~---~~~kl  175 (362)
T 3pg1_A          105 AMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE------AGVVHRDLHPGNILLADN---NDITI  175 (362)
T ss_dssp             TCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEE
T ss_pred             CcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CcCEecCCChHHEEEcCC---CCEEE
Confidence               26999999 5555554                     67888888      999999999999999875   89999


Q ss_pred             eecccceeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC----
Q psy6046         124 CDFEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL----  183 (379)
Q Consensus       124 ~DFG~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~----  183 (379)
                      +|||+++...........+||+.|+||                |+||++|+|++|+.||.+.+..+.+..+.....    
T Consensus       176 ~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~  255 (362)
T 3pg1_A          176 CDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKI  255 (362)
T ss_dssp             CCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCH
T ss_pred             EecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCh
Confidence            999999876555555667899999999                999999999999999999887777666543111    


Q ss_pred             --------------------CCC----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         184 --------------------DFP----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       184 --------------------~~~----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                          ..+    ....+..++.+.+||.+||..||.+|||+.|+++||||+......
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~  327 (362)
T 3pg1_A          256 EDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFDPL  327 (362)
T ss_dssp             HHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCCGG
T ss_pred             HHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccCcc
Confidence                                111    112346789999999999999999999999999999999875443

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.2e-37  Score=293.70  Aligned_cols=205  Identities=19%  Similarity=0.213  Sum_probs=161.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---------------
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------------   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------------   69 (379)
                      .+.||+|+||.||+|+++.+|+.||++.....   ...+.+.+|+.+|+.++||||+++++++.+               
T Consensus        11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~   90 (332)
T 3qd2_B           11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL   90 (332)
T ss_dssp             EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred             eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence            35899999999999999999999885443321   234678999999999999999999987522               


Q ss_pred             ---------------------------------------------ceEEeeC--CchhhHH-------------------
Q psy6046          70 ---------------------------------------------PLLGLNP--RPPVYQA-------------------   83 (379)
Q Consensus        70 ---------------------------------------------~~~v~e~--~g~l~~~-------------------   83 (379)
                                                                   .|++|||  +|+|.+.                   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~  170 (332)
T 3qd2_B           91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIF  170 (332)
T ss_dssp             -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHH
Confidence                                                         6899999  5666553                   


Q ss_pred             ----HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-------------cccccccCCC
Q psy6046          84 ----SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-------------EIRELLGTPD  146 (379)
Q Consensus        84 ----~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-------------~~~~~~gt~~  146 (379)
                          .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......             .....+||+.
T Consensus       171 ~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          171 IQIAEAVEFLHS------KGLMHRDLKPSNIFFTMD---DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHh------CCeeecCCCcccEEEeCC---CCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence                67888888      999999999999999975   899999999998765432             2234679999


Q ss_pred             Ccch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCC
Q psy6046         147 YVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPME  211 (379)
Q Consensus       147 y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  211 (379)
                      |+||               |+||++|+|++|..|+..  .......+.....  + ..+...++++.+||.+||..||.+
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~~~~~~li~~~l~~~p~~  316 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME--RVRIITDVRNLKF--P-LLFTQKYPQEHMMVQDMLSPSPTE  316 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH--HHHHHHHHHTTCC--C-HHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH--HHHHHHHhhccCC--C-cccccCChhHHHHHHHHccCCCCc
Confidence            9999               999999999999877532  2233334444332  2 223456889999999999999999


Q ss_pred             CCCHHHHhcCccccC
Q psy6046         212 RMTAKEALKHPWLMN  226 (379)
Q Consensus       212 Rpt~~e~l~hp~~~~  226 (379)
                      |||+.|+++||||++
T Consensus       317 Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          317 RPEATDIIENAIFEN  331 (332)
T ss_dssp             SCCHHHHHHSTTCCC
T ss_pred             CCCHHHHhhchhhhc
Confidence            999999999999975

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=290.76  Aligned_cols=215  Identities=21%  Similarity=0.233  Sum_probs=166.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeec-----------------C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLD-----------------P   68 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~-----------------~   68 (379)
                      .+.||+|+||.||+|.+..+|+.||+++....  .....+.+|+.+++.++||||+++++++                 .
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~   95 (320)
T 2i6l_A           16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELN   95 (320)
T ss_dssp             EEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCS
T ss_pred             EEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccC
Confidence            34899999999999999999998885443322  2345688999999999999999999875                 2


Q ss_pred             cceEEeeC-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          69 EPLLGLNP-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        69 ~~~~v~e~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      ..|+++|| .|+|.+.                   .|+.|||+      +||+||||||+||+++.+  ++.+||+|||+
T Consensus        96 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~--~~~~kl~Dfg~  167 (320)
T 2i6l_A           96 SVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHS------ANVLHRDLKPANLFINTE--DLVLKIGDFGL  167 (320)
T ss_dssp             EEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCSGGGEEEETT--TTEEEECCCTT
T ss_pred             ceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEEcCC--CCeEEEccCcc
Confidence            37899999 6666554                   67888888      999999999999999854  37899999999


Q ss_pred             ceeeccC----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC--
Q psy6046         129 SRVILDG----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP--  186 (379)
Q Consensus       129 a~~~~~~----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~--  186 (379)
                      ++.....    .......+|+.|+||                |+||++|+|++|+.||.+.+..+....+........  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  247 (320)
T 2i6l_A          168 ARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEE  247 (320)
T ss_dssp             CBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHH
T ss_pred             ccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchh
Confidence            9865422    123445689999999                999999999999999999888777766654321111  


Q ss_pred             ------------------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         187 ------------------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       187 ------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                              ...++.+++++.+||.+||..||.+|||++++++||||+.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          248 DRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFP  315 (320)
T ss_dssp             HHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-
T ss_pred             hhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCc
Confidence                                    11234689999999999999999999999999999999876644

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=4.5e-37  Score=285.76  Aligned_cols=207  Identities=22%  Similarity=0.303  Sum_probs=177.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .++||+|+||.||+|.+..+++.+|+ |....      ...+.+.+|+.+++.++||||+++++++.+   .|+++|+  
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   98 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADTKEVFAG-KIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR   98 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEeecCCEEEEEEEECCCCceEEE-EEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCC
Confidence            34899999999999999999988884 44322      234568899999999999999999998765   7999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      ++++.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... 
T Consensus        99 ~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~dfg~~~~~~~~~  169 (294)
T 2rku_A           99 RRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHR------NRVIHRDLKLGNLFLNED---LEVKIGDFGLATKVEYDG  169 (294)
T ss_dssp             TCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECCSTT
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCChHhEEEcCC---CCEEEEeccCceecccCc
Confidence            5666554                    67888888      999999999999999975   89999999999876532 


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      .......||+.|+||               |+|+++|+|++|..||.+....+....+.......|.    .+++.+.++
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l  245 (294)
T 2rku_A          170 ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK----HINPVAASL  245 (294)
T ss_dssp             CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT----TSCHHHHHH
T ss_pred             cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCcc----ccCHHHHHH
Confidence            234556799999999               9999999999999999999888888888887766654    579999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||++++++||||....
T Consensus       246 i~~~l~~~p~~Rps~~~ll~~~~~~~~~  273 (294)
T 2rku_A          246 IQKMLQTDPTARPTINELLNDEFFTSGY  273 (294)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             HHHHcccChhhCcCHHHHhhChheecCC
Confidence            9999999999999999999999998654

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=286.98  Aligned_cols=207  Identities=25%  Similarity=0.339  Sum_probs=155.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ...||+|+||.||+|++..+|+.||+ |.....      ....+.+|+.+++.++||||+++++++.+   .|+++||  
T Consensus        16 ~~~lg~G~~g~Vy~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   94 (278)
T 3cok_A           16 GNLLGKGSFAGVYRAESIHTGLEVAI-KMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCH   94 (278)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             eeeecCCCceEEEEEEEccCCceEEE-EEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCC
Confidence            45899999999999999999998884 544321      23568999999999999999999998765   7899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        95 ~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nili~~~---~~~kl~dfg~~~~~~~~  165 (278)
T 3cok_A           95 NGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHS------HGILHRDLTLSNLLLTRN---MNIKIADFGLATQLKMP  165 (278)
T ss_dssp             TEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSSCCGGGEEECTT---CCEEECCCTTCEECC--
T ss_pred             CCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHEEEcCC---CCEEEEeecceeeccCC
Confidence            5555544                     67888888      999999999999999875   89999999999876432


Q ss_pred             c-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         136 I-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      . ......||+.|+||               |+|+++|+|++|+.||...+..+....+.......|    ..+++++.+
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  241 (278)
T 3cok_A          166 HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMP----SFLSIEAKD  241 (278)
T ss_dssp             --------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCC----TTSCHHHHH
T ss_pred             CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCc----cccCHHHHH
Confidence            2 23456799999999               999999999999999988776666555554444443    358999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||.+||..||.+|||++++++||||....
T Consensus       242 li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          242 LIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             HHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             HHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence            99999999999999999999999997654

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=291.62  Aligned_cols=214  Identities=23%  Similarity=0.238  Sum_probs=169.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~   74 (379)
                      ...||+|+||.||+|++..+|+.||+++....    .....+.+|+.+++.++||||+++++++..         +|++|
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~  108 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  108 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred             eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEe
Confidence            35899999999999999999998885443322    123568899999999999999999998654         49999


Q ss_pred             eC-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          75 NP-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        75 e~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+ .|++...                  .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.... 
T Consensus       109 e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~------~~ivH~dlkp~NIl~~~~---~~~kl~Dfg~~~~~~~-  178 (353)
T 3coi_A          109 PFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHS------AGVVHRDLKPGNLAVNED---CELKILDFGLARHADA-  178 (353)
T ss_dssp             ECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSSCCGGGEEECTT---CCEEECSTTCTTC----
T ss_pred             ccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEeECCC---CcEEEeecccccCCCC-
Confidence            99 5555443                  67888888      999999999999999975   8999999999976532 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC----------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL----------------  183 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~----------------  183 (379)
                       .....+||+.|+||                |+||++|+|++|..||.+.+..+.+..+.....                
T Consensus       179 -~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  257 (353)
T 3coi_A          179 -EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  257 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHH
T ss_pred             -CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHH
Confidence             23456789999999                999999999999999999887776665543110                


Q ss_pred             -----------CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         184 -----------DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       184 -----------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                 ......++.+++++.+||.+||..||.+|||+.++++||||+.......
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~  317 (353)
T 3coi_A          258 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEE  317 (353)
T ss_dssp             HHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCGGG
T ss_pred             HHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccCccc
Confidence                       0011223467999999999999999999999999999999987765443

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=3.9e-37  Score=292.06  Aligned_cols=207  Identities=22%  Similarity=0.303  Sum_probs=177.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .++||+|+||.||+|++..+++.+|+ |....      ...+.+.+|+.+++.++||||+++++++.+   .|+++||  
T Consensus        46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~-K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  124 (335)
T 2owb_A           46 GRFLGKGGFAKCFEISDADTKEVFAG-KIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR  124 (335)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEE-EEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCC
Confidence            35899999999999999999988884 44332      234668999999999999999999998765   7999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      +++|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... 
T Consensus       125 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~NIl~~~~---~~~kl~Dfg~~~~~~~~~  195 (335)
T 2owb_A          125 RRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHR------NRVIHRDLKLGNLFLNED---LEVKIGDFGLATKVEYDG  195 (335)
T ss_dssp             TCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT---CCEEECCCTTCEECCSTT
T ss_pred             CCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCCEecCCCchhEEEcCC---CCEEEeeccCceecccCc
Confidence            5666655                    67888888      999999999999999975   89999999999876532 


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ......+||+.|+||               |+|+++|+|++|+.||.+....+....+......++.    .+++.+.+|
T Consensus       196 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l  271 (335)
T 2owb_A          196 ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK----HINPVAASL  271 (335)
T ss_dssp             CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCT----TSCHHHHHH
T ss_pred             ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCc----cCCHHHHHH
Confidence            234556799999999               9999999999999999998888888888887776654    579999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||++|+++||||....
T Consensus       272 i~~~l~~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          272 IQKMLQTDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             HHHHccCChhHCcCHHHHhcCccccCCC
Confidence            9999999999999999999999998754

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=4.5e-37  Score=291.87  Aligned_cols=211  Identities=23%  Similarity=0.311  Sum_probs=150.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHH-HHHHhCCCCCcceeeeecCc-------ceEEeeC--C
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEE-QLLKLIKVEPIEKYYSLDPE-------PLLGLNP--R   77 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~-~il~~l~hpnIv~~~~~~~~-------~~~v~e~--~   77 (379)
                      +++||+|+||.||+|+++.+|+.||+ |.....  ....+|+ ..++.+.||||+++++++..       +|++|||  +
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~--~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~g  110 (336)
T 3fhr_A           34 KQVLGLGVNGKVLECFHRRTGQKCAL-KLLYDS--PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEG  110 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EEEESS--HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTT
T ss_pred             ceeeeeCCCeEEEEEEECCCCCEEEE-EEecCc--HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCC
Confidence            45899999999999999999999884 544332  2233333 45788899999999998754       7899999  6


Q ss_pred             chhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          78 PPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        78 g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |+|.+.                      .|+.|||+      +||+||||||+||+++.++..+.+||+|||+++.....
T Consensus       111 g~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~------~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~  184 (336)
T 3fhr_A          111 GELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS------HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN  184 (336)
T ss_dssp             EEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC---
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCHHHEEEEecCCCceEEEeccccceecccc
Confidence            677665                      67888888      99999999999999987654577999999999876433


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHH----HHHHHhCCCCCCcccccCCCHH
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSET----FRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                       .....+||+.|+||               |+||++|+|++|..||.+.+....    ...+..+...++...+..++++
T Consensus       185 -~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (336)
T 3fhr_A          185 -ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSED  263 (336)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHH
T ss_pred             -ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHH
Confidence             34567889999999               999999999999999987654433    3444455566666666789999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +.+||.+||..||.+|||+.|+++||||++..
T Consensus       264 ~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          264 AKQLIRLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             HHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence            99999999999999999999999999998654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=8.2e-37  Score=280.98  Aligned_cols=208  Identities=20%  Similarity=0.305  Sum_probs=169.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|++..+|+.||+ |....    ...+.+.+|+.+++.++||||+++++++.+   .|+++|+  +|+
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   91 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAV-KIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEE-EEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCc
Confidence            4899999999999999999998884 44432    224678999999999999999999998764   7899999  566


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---  136 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---  136 (379)
                      |.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.......   
T Consensus        92 L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~dfg~~~~~~~~~~~~  162 (276)
T 2yex_A           92 LFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG------IGITHRDIKPENLLLDER---DNLKISDFGLATVFRYNNRER  162 (276)
T ss_dssp             GGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTTCEECEETTEEC
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCChHHEEEccC---CCEEEeeCCCccccCCCcchh
Confidence            6554                    67888888      999999999999999975   899999999998764322   


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .....+||+.|+||                |+|+++|+|++|..||.+.+.. .....+.......+  .+..+++.+.+
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  240 (276)
T 2yex_A          163 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN--PWKKIDSAPLA  240 (276)
T ss_dssp             CBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTST--TGGGSCHHHHH
T ss_pred             cccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccC--chhhcCHHHHH
Confidence            24456799999999                9999999999999999875543 23344443332222  23468999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||.+||..||.+|||++|+++||||++..
T Consensus       241 li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (276)
T 2yex_A          241 LLHKILVENPSARITIPDIKKDRWYNKPL  269 (276)
T ss_dssp             HHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             HHHHHCCCCchhCCCHHHHhcCccccChh
Confidence            99999999999999999999999998654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=2.1e-37  Score=293.24  Aligned_cols=211  Identities=18%  Similarity=0.220  Sum_probs=164.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .+||+|+||.||+|++..+|+.||+++......    ...+.+|+.+++.++||||+++++++.+   .|+++||  ++.
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  110 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTI  110 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEH
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcch
Confidence            389999999999999999999998554433221    3457899999999999999999998765   7999999  333


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      +...                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... ...
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~  181 (331)
T 4aaa_A          111 LDDLELFPNGLDYQVVQKYLFQIINGIGFCHS------HNIIHRDIKPENILVSQS---GVVKLCDFGFARTLAAPGEVY  181 (331)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCCTTC----------
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH------CCEEccCcChheEEEcCC---CcEEEEeCCCceeecCCcccc
Confidence            3332                    67888888      999999999999999875   89999999999875433 234


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC-------------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL-------------------  183 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~-------------------  183 (379)
                      ...+||+.|+||                |+||++|+|++|.+||.+.+..+....+.....                   
T Consensus       182 ~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (331)
T 4aaa_A          182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGV  261 (331)
T ss_dssp             --CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTC
T ss_pred             CCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccc
Confidence            556799999999                999999999999999999887766655532111                   


Q ss_pred             CCC--------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         184 DFP--------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       184 ~~~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+        ...++.+++.+.+||.+||..||.+|||+.|+|+||||+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  314 (331)
T 4aaa_A          262 RLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDG  314 (331)
T ss_dssp             CCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGGG
T ss_pred             cCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccCC
Confidence            111        112246799999999999999999999999999999997543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.3e-36  Score=286.49  Aligned_cols=214  Identities=19%  Similarity=0.230  Sum_probs=171.6

Q ss_pred             ccCcCCCCceEEEEEEEc-CCCcEEEEEEeccc-----ccchHHHHHHHHHHhC---CCCCcceeeeecC-----c---c
Q psy6046           8 SHVGGNRARSSCSRKPEK-TTKREVVQWKERNV-----SQGVVIVDEEQLLKLI---KVEPIEKYYSLDP-----E---P   70 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l---~hpnIv~~~~~~~-----~---~   70 (379)
                      .+.||+|+||.||+|++. .+|+.|| +|....     .....+.+|+.+++.+   +||||+++++++.     .   +
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~   94 (326)
T 1blx_A           16 VAEIGEGAYGKVFKARDLKNGGRFVA-LKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   94 (326)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEE-EEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEE
T ss_pred             eeeecccccEEEEEEEecCCCCEEEE-EEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceE
Confidence            348999999999999996 5666666 454432     2234678898888877   8999999999864     2   7


Q ss_pred             eEEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          71 LLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        71 ~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      ++++|+ .|+|.+.                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||
T Consensus        95 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~gi~H~dlkp~Nili~~~---~~~kl~Dfg  165 (326)
T 1blx_A           95 TLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS------HRVVHRDLKPQNILVTSS---GQIKLADFG  165 (326)
T ss_dssp             EEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECSCC
T ss_pred             EEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH------CCceeccCCHHHeEEcCC---CCEEEecCc
Confidence            899999 5565554                      57888888      999999999999999875   899999999


Q ss_pred             cceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC--------
Q psy6046         128 ISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD--------  184 (379)
Q Consensus       128 ~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~--------  184 (379)
                      +++............||+.|+||               |+|+++|+|++|++||.+.+..+.+..+......        
T Consensus       166 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  245 (326)
T 1blx_A          166 LARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR  245 (326)
T ss_dssp             SCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCT
T ss_pred             ccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCcc
Confidence            99876555455667899999999               9999999999999999998887777766532100        


Q ss_pred             ---------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccc
Q psy6046         185 ---------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM  231 (379)
Q Consensus       185 ---------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  231 (379)
                                     .....+..+++.+.+||.+||..||.+|||+.++++||||++..+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          246 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             TCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             ccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence                           01122356899999999999999999999999999999998876543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=4.1e-37  Score=284.99  Aligned_cols=209  Identities=20%  Similarity=0.259  Sum_probs=154.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---c-cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---S-QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~-~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      .+.||+|+||.||+|++..+|+.||++.....   . ....+.++...++.++||||+++++++.+   .|+++|| .|.
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   91 (290)
T 3fme_A           12 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTS   91 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCSEE
T ss_pred             HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhccc
Confidence            34899999999999999999998885443322   1 12234555566889999999999998754   8999999 555


Q ss_pred             hhHH------------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          80 VYQA------------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        80 l~~~------------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +.+.                        .|+.|||+      + ||+||||||+||+++.+   +.+||+|||+++....
T Consensus        92 l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           92 LDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS------KLSVIHRDVKPSNVLINAL---GQVKMCDFGISGYLVD  162 (290)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------HSCCCCCCCSGGGCEECTT---CCEEBCCC--------
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh------cCCeecCCCCHHHEEECCC---CCEEEeecCCcccccc
Confidence            4332                        57888887      8 99999999999999875   8999999999987765


Q ss_pred             CccccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCC-CCCCcccccCC
Q psy6046         135 GIEIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQ-LDFPDELFEDI  193 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~-~~~~~~~~~~~  193 (379)
                      ........||+.|+||                   |+|+++|+|++|..||.. .............. ...+.   ..+
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~  239 (290)
T 3fme_A          163 DVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPA---DKF  239 (290)
T ss_dssp             -------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCT---TTS
T ss_pred             cccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCccc---ccC
Confidence            5555556899999999                   999999999999999986 34444444444433 33222   368


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++++.+||.+||..||.+|||+.|+++||||+...
T Consensus       240 ~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~  274 (290)
T 3fme_A          240 SAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE  274 (290)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             CHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCc
Confidence            99999999999999999999999999999997543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.3e-36  Score=283.39  Aligned_cols=209  Identities=22%  Similarity=0.166  Sum_probs=169.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..||+|+||.||+|++..+|+.+|+ |....   .....+.+|+.+++.++||||+++++++.+   .|+++|+  +|.+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~ai-K~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l  103 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAA-KVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAV  103 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEE-EEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEH
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEE-EEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcH
Confidence            3799999999999999999988884 44332   334678999999999999999999998654   8999999  5555


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-ccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-IEI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-~~~  138 (379)
                      ...                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...... ...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~  174 (302)
T 2j7t_A          104 DAIMLELDRGLTEPQIQVVCRQMLEALNFLHS------KRIIHRDLKAGNVLMTLE---GDIRLADFGVSAKNLKTLQKR  174 (302)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEECTT---SCEEECCCHHHHHHHHHHHC-
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc------CCcccCCCCHHHEEECCC---CCEEEEECCCCcccccccccc
Confidence            543                     67888888      999999999999999875   88999999998643221 123


Q ss_pred             cccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         139 RELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      ....||+.|+||                    |+|+++|+|++|..||.+.+.......+........ .....++..+.
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  253 (302)
T 2j7t_A          175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTL-LTPSKWSVEFR  253 (302)
T ss_dssp             ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SSGGGSCHHHH
T ss_pred             ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCccc-CCccccCHHHH
Confidence            446789999998                    999999999999999999888877777766543321 12246899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +||.+||..||.+|||+.++++||||....
T Consensus       254 ~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  283 (302)
T 2j7t_A          254 DFLKIALDKNPETRPSAAQLLEHPFVSSIT  283 (302)
T ss_dssp             HHHHHHSCSCTTTSCCHHHHTTSTTTTTCC
T ss_pred             HHHHHHcccChhhCCCHHHHhcChHHhhhc
Confidence            999999999999999999999999998765

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=281.71  Aligned_cols=210  Identities=21%  Similarity=0.233  Sum_probs=170.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhHH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQA   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~~   83 (379)
                      +.||+|+||.||+|.+..+|+.||++..........+.+|+.+++.++||||+++++++.+   +|+++|+  +|+|.+.
T Consensus        35 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~  114 (314)
T 3com_A           35 EKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDI  114 (314)
T ss_dssp             EECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHH
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHH
Confidence            3899999999999999999999886555444556789999999999999999999998654   7999999  5566654


Q ss_pred             ---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          84 ---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        84 ---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                                           .|+.|||.      .||+||||||+||+++.+   +.+||+|||++....... .....
T Consensus       115 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~dfg~~~~~~~~~~~~~~~  185 (314)
T 3com_A          115 IRLRNKTLTEDEIATILQSTLKGLEYLHF------MRKIHRDIKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTV  185 (314)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECBTTBSCBCCC
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCCcCCCcCHHHEEECCC---CCEEEeecccchhhhhhccccCcc
Confidence                                 56788888      999999999999999875   899999999998765432 23456


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      .||+.|+||               |+|+++|+|++|..||.+.+.......+........ .....+++.+.+||.+||.
T Consensus       186 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~  264 (314)
T 3com_A          186 IGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTF-RKPELWSDNFTDFVKQCLV  264 (314)
T ss_dssp             CSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SSGGGSCHHHHHHHHHHTC
T ss_pred             CCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCccc-CCcccCCHHHHHHHHHHcc
Confidence            799999999               999999999999999998877766665555432211 1223579999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||+.++++||||+...
T Consensus       265 ~dp~~Rpt~~~ll~~~~~~~~~  286 (314)
T 3com_A          265 KSPEQRATATQLLQHPFVRSAK  286 (314)
T ss_dssp             SCTTTSCCHHHHTTSHHHHTCC
T ss_pred             CChhhCcCHHHHHhCHHHhcCC
Confidence            9999999999999999998765

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=2.2e-37  Score=290.59  Aligned_cols=210  Identities=21%  Similarity=0.270  Sum_probs=170.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e   75 (379)
                      +.||+|+||.||+|++..+|+.||+ |.....      ....+.+|+.+++.++||||+++++++..       +|++||
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e   96 (311)
T 3ork_A           18 EILGFGGMSEVHLARDLRDHRDVAV-KVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME   96 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEE-EEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEccCCCEEEEEEEECCCCceEEE-EEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEe
Confidence            4899999999999999999988884 544331      12468899999999999999999998654       399999


Q ss_pred             C--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          76 P--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        76 ~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |  +|+|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++...
T Consensus        97 ~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           97 YVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQ------NGIIHRDVKPANIMISAT---NAVKVMDFGIARAIA  167 (311)
T ss_dssp             CCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEEETT---SCEEECCCSCC----
T ss_pred             cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCCcCCCCHHHEEEcCC---CCEEEeeccCccccc
Confidence            9  5676655                    67888888      999999999999999875   889999999998764


Q ss_pred             cCc----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         134 DGI----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       134 ~~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ...    .....+||+.|+||               |+|+++|+|++|+.||.+.+..+....+.......+...+..+|
T Consensus       168 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
T 3ork_A          168 DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLS  247 (311)
T ss_dssp             --------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCC
T ss_pred             ccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCC
Confidence            332    23346799999999               99999999999999999998888877777776665555566799


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +++.+||.+||..||.+||++.+++.|+|++...
T Consensus       248 ~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          248 ADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999997544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=9.6e-38  Score=300.33  Aligned_cols=210  Identities=14%  Similarity=0.076  Sum_probs=149.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhC--CCCCcceeeeec------------
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLI--KVEPIEKYYSLD------------   67 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l--~hpnIv~~~~~~------------   67 (379)
                      .+.||+|+||.||+|++..+|+.||+ |....      .....+.+|+.+++.|  +||||++++..+            
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~  145 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVERLEDFAL-KVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQ  145 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEE-EEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTS
T ss_pred             eeeccCCCCEEEEEEEECCCCceeEE-EEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCC
Confidence            34899999999999999999998885 44433      2234577886555555  699988855322            


Q ss_pred             ---------------CcceEEeeC-CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCC
Q psy6046          68 ---------------PEPLLGLNP-RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFF  104 (379)
Q Consensus        68 ---------------~~~~~v~e~-~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrD  104 (379)
                                     ..+|++||| .|+|.+.                           .|+.|||+      +||+|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~------~~ivHrD  219 (371)
T 3q60_A          146 PPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS------KGLVHGH  219 (371)
T ss_dssp             CSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH------TTEEETT
T ss_pred             CCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHH------CCCccCc
Confidence                           226999999 5555544                           55677776      9999999


Q ss_pred             CCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCC
Q psy6046         105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFG  167 (379)
Q Consensus       105 lkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~  167 (379)
                      |||+|||++.+   +.+||+|||+++....  ......+|+.|+||                 |+||++|+|++|+.||.
T Consensus       220 ikp~NIll~~~---~~~kL~DFG~a~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~  294 (371)
T 3q60_A          220 FTPDNLFIMPD---GRLMLGDVSALWKVGT--RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFG  294 (371)
T ss_dssp             CSGGGEEECTT---SCEEECCGGGEEETTC--EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred             CCHHHEEECCC---CCEEEEecceeeecCC--CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCC
Confidence            99999999975   8999999999986532  22255677999999                 99999999999999998


Q ss_pred             CCChHHH--HHH---HHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         168 GETDSET--FRN---ISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       168 ~~~~~~~--~~~---i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      +.+....  ...   .......+....+..+|+.+.+||.+||..||++|||+.++|+||||++..+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  361 (371)
T 3q60_A          295 LVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQN  361 (371)
T ss_dssp             BCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHH
T ss_pred             CcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHH
Confidence            7643210  000   0111112222233578999999999999999999999999999999976553

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=3.4e-36  Score=291.66  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=162.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCC--CCCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIK--VEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~--hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      ..||+|+||.||+|.+.. |+.||+ |....     .....+.+|+.+|+.|+  ||||+++++++..   +|++||+ +
T Consensus        62 ~~LG~G~fg~Vy~~~~~~-~~~vai-K~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E~~~  139 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEK-KQIYAI-KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGN  139 (390)
T ss_dssp             EEEECCSSEEEEEEECTT-CCEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCS
T ss_pred             EEEccCCCeEEEEEEcCC-CCEEEE-EEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEecCC
Confidence            489999999999999865 777774 54432     22356899999999997  4999999987654   7999999 6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|.+.                    .|+.|||+      +||+||||||+|||+++    +.+||+|||+++...... 
T Consensus       140 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~ivHrDlkp~NIll~~----~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          140 IDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ------HGIVHSDLKPANFLIVD----GMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             EEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHT------TTCCCCCCCGGGEEESS----SCEEECCCSSSCCC-----
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCCHHHEEEEC----CeEEEEecCccccccCCCc
Confidence            666655                    56778887      99999999999999964    789999999998764332 


Q ss_pred             --cccccccCCCCcch--------------------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCc
Q psy6046         137 --EIRELLGTPDYVGK--------------------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPD  187 (379)
Q Consensus       137 --~~~~~~gt~~y~aP--------------------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~  187 (379)
                        .....+||+.|+||                          |+||++|+|++|++||.+.. ....+..+......++.
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~  289 (390)
T 2zmd_A          210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEF  289 (390)
T ss_dssp             ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCC
T ss_pred             cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCC
Confidence              23456899999998                          89999999999999998754 33555556554433221


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        ....++++.+||.+||..||.+|||+.|+|+||||+...
T Consensus       290 --~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          290 --PDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             --CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             --CccchHHHHHHHHHHcccChhhCCCHHHHhhCcCccccC
Confidence              234689999999999999999999999999999997654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.6e-37  Score=294.76  Aligned_cols=210  Identities=23%  Similarity=0.286  Sum_probs=171.9

Q ss_pred             cCcCCCCceEEEEEEEc---CCCcEEEEEEeccc-------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEK---TTKREVVQWKERNV-------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~   74 (379)
                      +.||+|+||.||+|++.   .+|+.||+ |....       .....+.+|+.+++.+ .||||+++++++.+   +|++|
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  138 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAM-KVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLIL  138 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEE-EEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEE
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEE-EEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEe
Confidence            48999999999999984   47888884 54332       2345678899999999 69999999988654   89999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +|+|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++..
T Consensus       139 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          139 DYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHK------LGIIYRDIKLENILLDSN---GHVVLTDFGLSKEF  209 (355)
T ss_dssp             CCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEESCSSEEEEC
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CcEEEeeCCCCeec
Confidence            99  6777665                    67888888      999999999999999875   89999999999876


Q ss_pred             ccCc--cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCC----ChHHHHHHHHhCCCCCCccc
Q psy6046         133 LDGI--EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       133 ~~~~--~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~----~~~~~~~~i~~~~~~~~~~~  189 (379)
                      ....  .....+||+.|+||                 |+||++|+|++|..||...    ........+......++.  
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~--  287 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ--  287 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCT--
T ss_pred             ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCc--
Confidence            4332  33456899999999                 9999999999999999743    344555666665555443  


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                        .+++.+.+||.+||..||.+||     |++++++||||....|...
T Consensus       288 --~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l  333 (355)
T 1vzo_A          288 --EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDL  333 (355)
T ss_dssp             --TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             --ccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHh
Confidence              5899999999999999999999     9999999999998776544

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=285.99  Aligned_cols=206  Identities=18%  Similarity=0.238  Sum_probs=160.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCC--CCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKV--EPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~h--pnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      ..||+|+||.||+|.+. +++.||+ |....     .....+.+|+.+|+.++|  |||+++++++.+   +|++||+ +
T Consensus        15 ~~lG~G~~g~Vy~~~~~-~~~~vav-K~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~~   92 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNE-KKQIYAI-KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGN   92 (343)
T ss_dssp             EEESCCSSEEEEEEECT-TSCEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             EEEecCCCeEEEEEEeC-CCCEEEE-EEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEeCCC
Confidence            48999999999999974 5777774 44332     123568899999999987  999999998765   7999999 6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|.+.                    .|+.|||+      +||+||||||+|||+++    +.+||+|||+++...... 
T Consensus        93 ~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~------~~iiHrDikp~NIll~~----~~~kl~DFG~a~~~~~~~~  162 (343)
T 3dbq_A           93 IDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ------HGIVHSDLKPANFLIVD----GMLKLIDFGIANQMQPDTT  162 (343)
T ss_dssp             EEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEEET----TEEEECCCSSSCCC-----
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCcceEEEEC----CcEEEeecccccccCcccc
Confidence            777665                    67888888      99999999999999974    789999999998764332 


Q ss_pred             --cccccccCCCCcch--------------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCCCCc
Q psy6046         137 --EIRELLGTPDYVGK--------------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPD  187 (379)
Q Consensus       137 --~~~~~~gt~~y~aP--------------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~~~~  187 (379)
                        .....+||+.|+||                          |+||++|+|++|+.||.+... ...+..+.......  
T Consensus       163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~--  240 (343)
T 3dbq_A          163 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI--  240 (343)
T ss_dssp             -------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC--
T ss_pred             cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc--
Confidence              23456899999998                          899999999999999987443 33444444332221  


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ......++++.+||.+||..||.+|||+.|+++||||+...
T Consensus       241 ~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  281 (343)
T 3dbq_A          241 EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  281 (343)
T ss_dssp             CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCccccccC
Confidence            12235688999999999999999999999999999997543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.7e-36  Score=292.76  Aligned_cols=212  Identities=19%  Similarity=0.207  Sum_probs=163.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCC-CCC-----cceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIK-VEP-----IEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~-hpn-----Iv~~~~~~~~---~~~v~e~-   76 (379)
                      +.||+|+||.||+|++..+|+.|| +|......  ...+.+|+.+++.++ |++     |+++++++..   +|++||+ 
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~va-iK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~  138 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVA-IKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEML  138 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEE-EEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECC
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEE-EEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecC
Confidence            389999999999999999998888 45544322  356788999999887 554     8888877543   8999999 


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      .|+|++.                      .|+.|||.    |+.||+||||||+|||++.+. .+.+||+|||+++....
T Consensus       139 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~----~~~~ivHrDlkp~NIll~~~~-~~~~kL~DFG~a~~~~~  213 (382)
T 2vx3_A          139 SYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT----PELSIIHCDLKPENILLCNPK-RSAIKIVDFGSSCQLGQ  213 (382)
T ss_dssp             CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS----TTTCEECCCCSGGGEEESSTT-SCCEEECCCTTCEETTC
T ss_pred             CCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc----CCCCEEcCCCCcccEEEecCC-CCcEEEEeccCceeccc
Confidence            6666654                      56777773    348999999999999996431 37899999999987633


Q ss_pred             CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccC-------
Q psy6046         135 GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFED-------  192 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~-------  192 (379)
                        .....+||+.|+||               |+||++|+|++|++||.+.+..+.+..+.......+...+..       
T Consensus       214 --~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  291 (382)
T 2vx3_A          214 --RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKF  291 (382)
T ss_dssp             --CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHH
T ss_pred             --ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHH
Confidence              34567899999999               999999999999999999888887777654321111100000       


Q ss_pred             -----------------------------------------------------CCHHHHHHHHHhcccCCCCCCCHHHHh
Q psy6046         193 -----------------------------------------------------ISPEAKDFIAKILIKNPMERMTAKEAL  219 (379)
Q Consensus       193 -----------------------------------------------------~s~~~~~li~~~L~~dP~~Rpt~~e~l  219 (379)
                                                                           .++++.+||.+||..||++|||++|+|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L  371 (382)
T 2vx3_A          292 FEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYAL  371 (382)
T ss_dssp             EEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHT
T ss_pred             HHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHh
Confidence                                                                 014789999999999999999999999


Q ss_pred             cCccccCCc
Q psy6046         220 KHPWLMNKK  228 (379)
Q Consensus       220 ~hp~~~~~~  228 (379)
                      +||||++..
T Consensus       372 ~hp~f~~~~  380 (382)
T 2vx3_A          372 QHSFFKKTA  380 (382)
T ss_dssp             TSGGGCC--
T ss_pred             cCcccccCC
Confidence            999998654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.6e-36  Score=290.27  Aligned_cols=208  Identities=21%  Similarity=0.245  Sum_probs=165.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..||+|+||.||+|++..+|+.||+ |....    .....+.+|+.+++.++||||+++++++.+   +|++|||  +|+
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  117 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMAR-KLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS  117 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEE-EEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCB
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEE-EEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCC
Confidence            4899999999999999999988884 54432    224568999999999999999999998654   7999999  667


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      |.+.                    .|+.|||+      . ||+||||||+||+++.+   +.+||+|||++...... ..
T Consensus       118 L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~------~~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~-~~  187 (360)
T 3eqc_A          118 LDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE------KHKIMHRDVKPSNILVNSR---GEIKLCDFGVSGQLIDS-MA  187 (360)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------HHCCCCSCCSGGGEEECTT---CCEEECCCCCCHHHHHH-C-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH------hCCEEcCCccHHHEEECCC---CCEEEEECCCCcccccc-cc
Confidence            7665                    56778876      6 99999999999999985   89999999999765332 34


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHH---------------------------
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFR---------------------------  176 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~---------------------------  176 (379)
                      ...+||+.|+||               |+||++|+|++|..||...+..+...                           
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T 3eqc_A          188 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKF  267 (360)
T ss_dssp             ---CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------
T ss_pred             cCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCccccc
Confidence            556899999999               99999999999999998766544322                           


Q ss_pred             ---------------HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         177 ---------------NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       177 ---------------~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                     .+......  ......+++++.+||.+||..||.+|||++|+|+||||+...+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  333 (360)
T 3eqc_A          268 GMDSRPPMAIFELLDYIVNEPPP--KLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA  333 (360)
T ss_dssp             ------CCCHHHHHHHHHHSCCC--CCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred             ccCCCCcccchhhhhHHhccCCC--CCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchH
Confidence                           22222111  1112357999999999999999999999999999999986553

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=285.57  Aligned_cols=210  Identities=20%  Similarity=0.206  Sum_probs=165.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      ..++||+|+||.||+|++..+|+.||+ |....    ...+.+.+|+.+++.++||||+++++++.+     .|++||| 
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (319)
T 4euu_A           13 LSDILGQGATANVFRGRHKKTGDLFAI-KVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (319)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEecCCCCeEEEEEEECCCCcEEEE-EEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCC
Confidence            345899999999999999999998884 54433    234668899999999999999999998542     6899999 


Q ss_pred             -CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec-CCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG~a~~  131 (379)
                       +|+|.+.                       .|+.|||+      +||+||||||+||++... +..+.+||+|||+++.
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           92 PCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE------NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             TTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             CCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH------CCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence             5666554                       67888888      999999999999998322 1236799999999998


Q ss_pred             eccCccccccccCCCCcch-----------------------HHHHHHHHHhhCCCCCCCC----ChHHHHHHHHhCCCC
Q psy6046         132 ILDGIEIRELLGTPDYVGK-----------------------SLGVTAYVLLTGFSPFGGE----TDSETFRNISKAQLD  184 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP-----------------------SlGvil~~lltg~~Pf~~~----~~~~~~~~i~~~~~~  184 (379)
                      ..........+||+.|+||                       |+||++|+|++|..||...    ...+.+..+..+...
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~  245 (319)
T 4euu_A          166 LEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPS  245 (319)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCT
T ss_pred             cCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCc
Confidence            7766666677899999998                       9999999999999999643    234555555554321


Q ss_pred             ---------------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         185 ---------------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       185 ---------------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                                           .+......+++.+.+||.+||..||++|||++|+|+||=
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          246 GAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             TCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             ccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence                                 111112234668899999999999999999999999873

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=9.3e-36  Score=278.08  Aligned_cols=207  Identities=22%  Similarity=0.236  Sum_probs=174.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|++..+|+.||+ |....    .....+.+|+.+++.++||||+++++++.+   +|+++||  +|+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  106 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAI-KIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGS  106 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEE-EEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCc
Confidence            4799999999999999999998884 54432    234678999999999999999999998654   7999999  566


Q ss_pred             hhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          80 VYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        80 l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      |.+.                   .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....... ...
T Consensus       107 L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~~  177 (303)
T 3a7i_A          107 ALDLLEPGPLDETQIATILREILKGLDYLHS------EKKIHRDIKAANVLLSEH---GEVKLADFGVAGQLTDTQIKRN  177 (303)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECBTTBCCBC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCccCCCChheEEECCC---CCEEEeecccceecCccccccC
Confidence            6654                   67888888      999999999999999875   899999999998765443 334


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ...||+.|+||               |+|+++|+|++|..||...........+..+...   .....+++.+.+||.+|
T Consensus       178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~  254 (303)
T 3a7i_A          178 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPP---TLEGNYSKPLKEFVEAC  254 (303)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC---CCCSSCCHHHHHHHHHH
T ss_pred             ccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCC---CCccccCHHHHHHHHHH
Confidence            56799999999               9999999999999999988887777777665432   22346899999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||+.++++||||....
T Consensus       255 l~~dp~~Rps~~~ll~~~~~~~~~  278 (303)
T 3a7i_A          255 LNKEPSFRPTAKELLKHKFILRNA  278 (303)
T ss_dssp             CCSSGGGSCCHHHHTTCHHHHHHC
T ss_pred             cCCChhhCcCHHHHhhChhhhcCC
Confidence            999999999999999999997543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=282.52  Aligned_cols=208  Identities=20%  Similarity=0.262  Sum_probs=166.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhC-CCCCcceeeeecC---------cceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLI-KVEPIEKYYSLDP---------EPLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l-~hpnIv~~~~~~~---------~~~~v~e~   76 (379)
                      +.||+|+||.||+|++..+|+.||+ |....  .....+.+|+.+++.+ +||||+++++++.         .+|+++||
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~  108 (326)
T 2x7f_A           30 ELVGNGTYGQVYKGRHVKTGQLAAI-KVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF  108 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEEC
T ss_pred             EEeccCCCEEEEEEEECCCCCeEEE-EEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEc
Confidence            4899999999999999999998884 54433  3456799999999999 7999999999863         37999999


Q ss_pred             --CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          77 --RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        77 --~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                        +|+|.+.                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||++...
T Consensus       109 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~dlkp~NIl~~~~---~~~kl~Dfg~~~~~  179 (326)
T 2x7f_A          109 CGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ------HKVIHRDIKGQNVLLTEN---AEVKLVDFGVSAQL  179 (326)
T ss_dssp             CTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEECTT---CCEEECCCTTTC--
T ss_pred             CCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH------CCccccCCcHHHEEEcCC---CCEEEeeCcCceec
Confidence              5566554                      56788888      999999999999999875   89999999999876


Q ss_pred             ccCc-cccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         133 LDGI-EIRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       133 ~~~~-~~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      .... ......||+.|+||                    |+||++|+|++|..||.+.+.......+.....+.  ....
T Consensus       180 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~  257 (326)
T 2x7f_A          180 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPR--LKSK  257 (326)
T ss_dssp             -----------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC--CSCS
T ss_pred             CcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccc--CCcc
Confidence            4332 23456799999998                    99999999999999999888777777666654322  2234


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+++.+.+||.+||..||.+|||+.++++||||++..
T Consensus       258 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  294 (326)
T 2x7f_A          258 KWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQP  294 (326)
T ss_dssp             CSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCT
T ss_pred             ccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCc
Confidence            6899999999999999999999999999999997654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=278.44  Aligned_cols=209  Identities=19%  Similarity=0.179  Sum_probs=161.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      +||+|+||.||+|.+..+++.||++.....  ...+.+.+|+.+++.++||||+++++++.+   .++++|+  +|+|.+
T Consensus        29 ~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~  108 (295)
T 2clq_A           29 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSA  108 (295)
T ss_dssp             EEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHH
T ss_pred             EEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHH
Confidence            899999999999999999998885433322  234678999999999999999999998764   7899999  445444


Q ss_pred             H-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          83 A-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        83 ~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      .                       .|+.|||+      +||+||||||+||+++..  ++.+||+|||++....... ..
T Consensus       109 ~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~--~~~~kl~Dfg~~~~~~~~~~~~  180 (295)
T 2clq_A          109 LLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD------NQIVHRDIKGDNVLINTY--SGVLKISDFGTSKRLAGINPCT  180 (295)
T ss_dssp             HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEETT--TCCEEECCTTTCEESCC-----
T ss_pred             HHHhhccCCCccHHHHHHHHHHHHHHHHHHHh------CCEEccCCChhhEEEECC--CCCEEEeecccccccCCCCCcc
Confidence            3                       56778887      999999999999999873  3799999999998764322 23


Q ss_pred             cccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 RELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 ~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ....||+.|+||                 |+|+++|+|++|..||.+.... ..........  ........+++++.+|
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l  258 (295)
T 2clq_A          181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFK--VHPEIPESMSAEAKAF  258 (295)
T ss_dssp             CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHC--CCCCCCTTSCHHHHHH
T ss_pred             cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccc--ccccccccCCHHHHHH
Confidence            456799999999                 9999999999999999764332 2222221111  1122234689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||+.++++||||+...
T Consensus       259 i~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          259 ILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             HHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             HHHHccCChhhCCCHHHHhcChhhhhcc
Confidence            9999999999999999999999998654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.3e-35  Score=274.02  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=161.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|++..+|+.||++.....    .....+.+|+.++..+ +||||+++++++.+   .|+++||  +|
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   96 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGG   96 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCC
Confidence            4899999999999999999999885433321    2345688999999999 89999999998764   8999999  66


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC----------------CC
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF----------------PN  118 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~----------------~~  118 (379)
                      +|.+.                        .|+.|||+      +||+||||||+||+++..+                ..
T Consensus        97 ~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~  170 (289)
T 1x8b_A           97 SLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS------MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNK  170 (289)
T ss_dssp             BHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEC--------------------C
T ss_pred             cHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh------CCEeecCCCHHHEEEcCCCCCcccccccccccccCCc
Confidence            77655                        56788888      9999999999999998542                23


Q ss_pred             CcEEEeecccceeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC
Q psy6046         119 CDIKVCDFEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ  182 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~  182 (379)
                      ..+||+|||.+......   ....||+.|+||                |+||++|+|++|.+|+....   ....+..+.
T Consensus       171 ~~~kl~Dfg~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~~~~~~~~~  244 (289)
T 1x8b_A          171 VMFKIGDLGHVTRISSP---QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---QWHEIRQGR  244 (289)
T ss_dssp             CCEEECCCTTCEETTCS---CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---HHHHHHTTC
T ss_pred             eEEEEcccccccccCCc---cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---HHHHHHcCC
Confidence            57999999999876433   334689999999                99999999999998875543   344455544


Q ss_pred             CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         183 LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       183 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+.   ....+++++.+||.+||..||.+|||+.++++||||.+..
T Consensus       245 ~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  287 (289)
T 1x8b_A          245 LPR---IPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSAS  287 (289)
T ss_dssp             CCC---CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC----
T ss_pred             CCC---CCcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhhc
Confidence            332   2246899999999999999999999999999999997643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=289.68  Aligned_cols=210  Identities=12%  Similarity=0.130  Sum_probs=170.4

Q ss_pred             cCcCCCCceEEEEEE-----EcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKP-----EKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~-----~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|+     +..+++.|| +|....    .....+.+|+.+++.++||||+++++++.+   .|++|||
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~  155 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVA-VKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLEL  155 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEE-EEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEE-EEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEe
Confidence            379999999999999     445666777 454432    223468899999999999999999999765   7999999


Q ss_pred             --CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 --RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 --~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                        +|+|.+.                           .|+.|||+      +||+||||||+|||++.++.+..+||+|||
T Consensus       156 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~~~~~~~kL~DFG  229 (367)
T 3l9p_A          156 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE------NHFIHRDIAARNCLLTCPGPGRVAKIGDFG  229 (367)
T ss_dssp             CTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             CCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh------CCeeCCCCChhhEEEecCCCCceEEECCCc
Confidence              6676654                           56788888      999999999999999976445679999999


Q ss_pred             cceeeccC---ccccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         128 ISRVILDG---IEIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       128 ~a~~~~~~---~~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      +++.....   .......||+.|+||               |+||++|+|++ |..||.+.+..+....+..+....++ 
T Consensus       230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~-  308 (367)
T 3l9p_A          230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPP-  308 (367)
T ss_dssp             HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCC-
T ss_pred             cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCC-
Confidence            99765322   123346689999999               99999999998 99999999999998888876543332 


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        ..+++.+.+||.+||..||.+|||+.++++|.++....
T Consensus       309 --~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          309 --KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             --ccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence              36899999999999999999999999999998875443

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.7e-37  Score=297.90  Aligned_cols=200  Identities=13%  Similarity=0.114  Sum_probs=154.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHH---HHHHhCCCCCcceeeeec-------C---
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEE---QLLKLIKVEPIEKYYSLD-------P---   68 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~---~il~~l~hpnIv~~~~~~-------~---   68 (379)
                      .+.||+|+||.||+|++..+|+.||+ |....      ...+.+.+|+   .+|+.++||||+++++.+       .   
T Consensus        78 ~~~lG~G~~g~V~~a~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~  156 (377)
T 3byv_A           78 GTVLGQEDPYAYLEATDQETGESFEV-HVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQ  156 (377)
T ss_dssp             EEEEEEETTEEEEEEEC-CCCCEEEE-EEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTT
T ss_pred             cceeecCCCEEEEEEEECCCCcEEEE-EEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccC
Confidence            35899999999999999999999885 44321      2346788999   555666799999988322       1   


Q ss_pred             -----------------cceEEeeC-CchhhHH---------------------------HHHHHHhcccCCCCCCeEeC
Q psy6046          69 -----------------EPLLGLNP-RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFF  103 (379)
Q Consensus        69 -----------------~~~~v~e~-~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHr  103 (379)
                                       ..|++||| +|+|.+.                           .|+.|||+      +||+||
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivHr  230 (377)
T 3byv_A          157 KKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH------YGLVHT  230 (377)
T ss_dssp             SCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH------TTEECS
T ss_pred             CccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh------CCeecC
Confidence                             26899999 6666543                           56778887      999999


Q ss_pred             CCCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch--------------------------HHHHHHH
Q psy6046         104 FLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK--------------------------SLGVTAY  157 (379)
Q Consensus       104 Dlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP--------------------------SlGvil~  157 (379)
                      ||||+|||++.+   +.+||+|||+++..  +......+| +.|+||                          |+||++|
T Consensus       231 Dikp~NIll~~~---~~~kL~DFG~a~~~--~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~  304 (377)
T 3byv_A          231 YLRPVDIVLDQR---GGVFLTGFEHLVRD--GARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIY  304 (377)
T ss_dssp             CCCGGGEEECTT---CCEEECCGGGCEET--TCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHH
T ss_pred             CCCHHHEEEcCC---CCEEEEechhheec--CCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHH
Confidence            999999999975   89999999999863  224456678 999998                          8999999


Q ss_pred             HHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         158 VLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       158 ~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +|++|+.||.+.+.......+..        .+..+++++.+||.+||..||.+|||+.++++||||++..
T Consensus       305 elltg~~Pf~~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          305 WIWCADLPITKDAALGGSEWIFR--------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             HHHHSSCCC------CCSGGGGS--------SCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             HHHHCCCCCcccccccchhhhhh--------hccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHH
Confidence            99999999987654433333222        1246899999999999999999999999999999997543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=5.2e-36  Score=276.22  Aligned_cols=209  Identities=20%  Similarity=0.281  Sum_probs=172.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++..+|+.||++.....    ...+.+.+|+.+++.++||||+++++++.     .+|+++||  
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~   90 (279)
T 2w5a_A           11 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE   90 (279)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCT
T ss_pred             ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCC
Confidence            35899999999999999999998885433221    23456899999999999999999999752     27999999  


Q ss_pred             CchhhHH------------------------HHHHHHhcccCCCCCC-----eEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 RPPVYQA------------------------SATTKAGSVLFPPLMD-----FIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 ~g~l~~~------------------------~al~~lh~~~~~h~~~-----ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      +|+|.+.                        .|+.|||+      .|     |+||||||+||+++.+   +.+||+|||
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~~~~~~ivH~dl~p~NIl~~~~---~~~kl~dfg  161 (279)
T 2w5a_A           91 GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR------RSDGGHTVLHRDLKPANVFLDGK---QNVKLGDFG  161 (279)
T ss_dssp             TEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------HC------CCCCCSGGGEEECSS---SCEEECCCC
T ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc------ccCCCCeeEEeccchhhEEEcCC---CCEEEecCc
Confidence            5666554                        56788887      88     9999999999999875   899999999


Q ss_pred             cceeeccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccccc
Q psy6046         128 ISRVILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE  191 (379)
Q Consensus       128 ~a~~~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  191 (379)
                      ++....... ......||+.|+||               |+|+++|+|++|..||.+.+..+....+..+.....   ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~---~~  238 (279)
T 2w5a_A          162 LARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRI---PY  238 (279)
T ss_dssp             HHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC---CT
T ss_pred             hheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccC---Cc
Confidence            997654332 23456799999999               999999999999999999988888888888765322   23


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+++++.++|.+||..||.+|||+.|+++|+|+.+..
T Consensus       239 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          239 RYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             ccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence            6899999999999999999999999999999997654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.4e-36  Score=293.62  Aligned_cols=209  Identities=20%  Similarity=0.191  Sum_probs=160.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCC--------CCCcceeeeecC-------cce
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIK--------VEPIEKYYSLDP-------EPL   71 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~--------hpnIv~~~~~~~-------~~~   71 (379)
                      +.||+|+||.||+|++..+|+.|| +|.....  ..+.+.+|+.+++.++        ||||+++++++.       .+|
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~  121 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVA-MKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHIC  121 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEE-EEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEE
T ss_pred             EEeeecCCeeEEEEEecCCCeEEE-EEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEE
Confidence            379999999999999999998888 4554432  2466889999999996        788999999865       389


Q ss_pred             EEeeC-CchhhHH----------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecC-----------
Q psy6046          72 LGLNP-RPPVYQA----------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDF-----------  116 (379)
Q Consensus        72 ~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~-----------  116 (379)
                      ++||| +|.+.+.                      .|+.|||+      + ||+||||||+|||++.++           
T Consensus       122 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~givHrDikp~NIll~~~~~~~~~~~~~~~  195 (397)
T 1wak_A          122 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT------KCRIIHTDIKPENILLSVNEQYIRRLAAEAT  195 (397)
T ss_dssp             EEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH------TTCEECCCCSGGGEEECCCHHHHHHHHHHHC
T ss_pred             EEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH------hCCEecCCCCHHHeeEeccchhhhhhhhhhH
Confidence            99999 5555443                      67888888      8 999999999999998641           


Q ss_pred             -----------------------------------CCCcEEEeecccceeeccCccccccccCCCCcch-----------
Q psy6046         117 -----------------------------------PNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----------  150 (379)
Q Consensus       117 -----------------------------------~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----------  150 (379)
                                                         ....+||+|||+++....  .....+||+.|+||           
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  273 (397)
T 1wak_A          196 EWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK--HFTEDIQTRQYRSLEVLIGSGYNTP  273 (397)
T ss_dssp             ---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB--CSCSCCSCGGGCCHHHHHTSCCCTH
T ss_pred             HHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc--cCccCCCCCcccCChhhcCCCCCcH
Confidence                                               113799999999987543  34556899999999           


Q ss_pred             ----HHHHHHHHHhhCCCCCCCCC------hHHHHHHHHhCCCCCCc---------------------------------
Q psy6046         151 ----SLGVTAYVLLTGFSPFGGET------DSETFRNISKAQLDFPD---------------------------------  187 (379)
Q Consensus       151 ----SlGvil~~lltg~~Pf~~~~------~~~~~~~i~~~~~~~~~---------------------------------  187 (379)
                          |+||++|+|++|..||.+.+      ..+.+..+.......|.                                 
T Consensus       274 ~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (397)
T 1wak_A          274 ADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEV  353 (397)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHh
Confidence                99999999999999997654      22233332221111110                                 


Q ss_pred             -----ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         188 -----ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       188 -----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                           ......++.+.+||.+||..||++|||++|+|+||||++
T Consensus       354 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          354 LVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             HHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             hhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence                 001123567899999999999999999999999999963

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=2.5e-36  Score=281.34  Aligned_cols=211  Identities=21%  Similarity=0.239  Sum_probs=149.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|.+..+|+.|| +|....    .....+.+|+.+++.++||||+++++++..   .|+++||  +|
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   98 (303)
T 2vwi_A           20 QEVIGSGATAVVQAAYCAPKKEKVA-IKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGG   98 (303)
T ss_dssp             EEECC---CCCEEEEEC----CEEE-EECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTC
T ss_pred             hheeccccceEEEEEEECCCCcEEE-EEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCC
Confidence            4589999999999999999998888 555443    234568899999999999999999998653   8999999  56


Q ss_pred             hhhHH----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          79 PVYQA----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        79 ~l~~~----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|.+.                            .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.
T Consensus        99 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dl~p~Nil~~~~---~~~kl~dfg~~~  169 (303)
T 2vwi_A           99 SVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK------NGQIHRDVKAGNILLGED---GSVQIADFGVSA  169 (303)
T ss_dssp             BHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEECTT---CCEEECCCHHHH
T ss_pred             chHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh------CCCCCCCCChhhEEEcCC---CCEEEEeccchh
Confidence            55443                            56788888      999999999999999875   899999999987


Q ss_pred             eeccCc------cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC--
Q psy6046         131 VILDGI------EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP--  186 (379)
Q Consensus       131 ~~~~~~------~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~--  186 (379)
                      ......      ......||+.|+||                |+|+++|+|++|..||.+.+................  
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  249 (303)
T 2vwi_A          170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLET  249 (303)
T ss_dssp             HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC
T ss_pred             eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCcccc
Confidence            653221      23446799999999                999999999999999988776655554444332211  


Q ss_pred             ----cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         187 ----DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       187 ----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                          ......+++++.+||.+||..||.+|||+.++++||||+...
T Consensus       250 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          250 GVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             -----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             ccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcCC
Confidence                123356899999999999999999999999999999998654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=3.1e-36  Score=286.61  Aligned_cols=209  Identities=22%  Similarity=0.283  Sum_probs=170.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc------c--------------hHHHHHHHHHHhCCCCCcceeeeec
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ------G--------------VVIVDEEQLLKLIKVEPIEKYYSLD   67 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~------~--------------~~~~~E~~il~~l~hpnIv~~~~~~   67 (379)
                      .+.||+|+||.||+|++  +|+.||+ |......      .              ..+.+|+.+++.++||||+++++++
T Consensus        36 ~~~lg~G~~g~V~~~~~--~~~~vav-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~  112 (348)
T 2pml_X           36 IRTLNQGKFNKIILCEK--DNKFYAL-KKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGII  112 (348)
T ss_dssp             EEEEECCSSCCEEEEEE--TTEEEEE-EEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEE
T ss_pred             EEEEcCCCCeEEEEEEc--CCceEEE-EEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            34899999999999998  8888884 4433211      1              7799999999999999999999986


Q ss_pred             Cc---ceEEeeC--CchhhHH----------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          68 PE---PLLGLNP--RPPVYQA----------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        68 ~~---~~~v~e~--~g~l~~~----------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      .+   .|++|||  +|+|.+.                            .|+.|||+     .+||+||||||+||+++.
T Consensus       113 ~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~-----~~~i~H~dl~p~Nil~~~  187 (348)
T 2pml_X          113 TNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN-----EKNICHRDVKPSNILMDK  187 (348)
T ss_dssp             ESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH-----TSCEECCCCCGGGEEECT
T ss_pred             eeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc-----cCCEeecCCChHhEEEcC
Confidence            64   8999999  4455331                            45555553     289999999999999987


Q ss_pred             cCCCCcEEEeecccceeeccCccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCCh-HHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETD-SETFR  176 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~-~~~~~  176 (379)
                      +   +.+||+|||++...... ......||+.|+||                 |+|+++|+|++|..||.+.+. .+...
T Consensus       188 ~---~~~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  263 (348)
T 2pml_X          188 N---GRVKLSDFGESEYMVDK-KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFN  263 (348)
T ss_dssp             T---SCEEECCCTTCEECBTT-EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHH
T ss_pred             C---CcEEEeccccccccccc-cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHH
Confidence            5   89999999999876444 44556789999999                 999999999999999988776 78888


Q ss_pred             HHHhCCCCCCcc---------------cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         177 NISKAQLDFPDE---------------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       177 ~i~~~~~~~~~~---------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+..+...+|..               ....+++++.+||.+||..||.+|||+.|+++||||.+..
T Consensus       264 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~  330 (348)
T 2pml_X          264 NIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTN  330 (348)
T ss_dssp             HHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             HHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCC
Confidence            888877666531               1146899999999999999999999999999999998765

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=6.9e-36  Score=277.93  Aligned_cols=209  Identities=20%  Similarity=0.311  Sum_probs=165.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCCCcceeeeecC----------------cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVEPIEKYYSLDP----------------EP   70 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~----------------~~   70 (379)
                      .+.||+|+||.||+|++..+|+.||++..... .....+.+|+.+++.++||||+++++++.                ..
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (303)
T 1zy4_A           11 IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTL   90 (303)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEE
T ss_pred             hheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCce
Confidence            35899999999999999999998885433222 23456889999999999999999998642                27


Q ss_pred             eEEeeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          71 LLGLNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        71 ~~v~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                      |+++||  +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~i~H~dlkp~Nil~~~~---~~~kl~dfg  161 (303)
T 1zy4_A           91 FIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS------QGIIHRDLKPMNIFIDES---RNVKIGDFG  161 (303)
T ss_dssp             EEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECCCC
T ss_pred             EEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHh------CCeecccCCHHhEEEcCC---CCEEEeeCc
Confidence            899999  5677665                     56888888      999999999999999875   889999999


Q ss_pred             cceeeccC---------------ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCC-CChHHHH
Q psy6046         128 ISRVILDG---------------IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGG-ETDSETF  175 (379)
Q Consensus       128 ~a~~~~~~---------------~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~-~~~~~~~  175 (379)
                      ++......               .......||+.|+||                |+||++|+|++   ||.. .+..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~  238 (303)
T 1zy4_A          162 LAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNIL  238 (303)
T ss_dssp             CCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHH
T ss_pred             chhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHH
Confidence            99765321               123456799999999                99999999998   5543 3445666


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+......+|.......++.+.+||.+||..||.+|||+.++++||||....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          239 KKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            77777777777766677889999999999999999999999999999997654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=5e-36  Score=285.29  Aligned_cols=214  Identities=17%  Similarity=0.183  Sum_probs=165.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCC------cceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEP------IEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~---~~~v~e~-   76 (379)
                      +.||+|+||.||+|.+..++...+++|....  ...+.+.+|+.+++.++|++      ++.+++++..   +|++||+ 
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~  104 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL  104 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc
Confidence            3799999999999999988855444676654  23456889999999998776      7777776543   8999999 


Q ss_pred             CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec----------------CCC
Q psy6046          77 RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD----------------FPN  118 (379)
Q Consensus        77 ~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~----------------~~~  118 (379)
                      +|.+.+.                      .|+.|||+      +||+||||||+|||++..                ..+
T Consensus       105 ~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~------~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~  178 (355)
T 2eu9_A          105 GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHE------NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKN  178 (355)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESC
T ss_pred             CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEEecccccccccccccccccccCC
Confidence            5555443                      56777777      999999999999999432                124


Q ss_pred             CcEEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCC
Q psy6046         119 CDIKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQL  183 (379)
Q Consensus       119 ~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~  183 (379)
                      +.+||+|||+++....  .....+||+.|+||               |+||++|+|++|..||.+.+..+....+.....
T Consensus       179 ~~~kl~Dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  256 (355)
T 2eu9_A          179 TSIRVADFGSATFDHE--HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILG  256 (355)
T ss_dssp             CCEEECCCTTCEETTS--CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             CcEEEeecCccccccc--cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcC
Confidence            8899999999986432  34556899999999               999999999999999998887766655544322


Q ss_pred             CCCccc----------------c------------------------cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         184 DFPDEL----------------F------------------------EDISPEAKDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       184 ~~~~~~----------------~------------------------~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      ..|...                |                        ...++++.+||.+||..||++|||+.|+|+|||
T Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~  336 (355)
T 2eu9_A          257 PIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPF  336 (355)
T ss_dssp             CCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGG
T ss_pred             CCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChh
Confidence            222110                0                        012457889999999999999999999999999


Q ss_pred             ccCCccc
Q psy6046         224 LMNKKQI  230 (379)
Q Consensus       224 ~~~~~~~  230 (379)
                      |.+..+.
T Consensus       337 f~~~~~~  343 (355)
T 2eu9_A          337 FAGLTPE  343 (355)
T ss_dssp             GGGCCHH
T ss_pred             hcCCChh
Confidence            9987643

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2e-35  Score=275.68  Aligned_cols=201  Identities=24%  Similarity=0.355  Sum_probs=159.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHH-HhCCCCCcceeeeecCc-------ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLL-KLIKVEPIEKYYSLDPE-------PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il-~~l~hpnIv~~~~~~~~-------~~~v~e~--~g   78 (379)
                      ++||+|+||.||+|.+..+|+.||+ |....  ...+.+|+.++ +.++||||+++++++.+       +|+++||  +|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~--~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~  100 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFAL-KMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  100 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEE-EEecc--cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCC
Confidence            5899999999999999999998884 55433  35678899988 77789999999998653       7899999  66


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|.+.                      .|+.|||+      +||+||||||+||+++...+++.+||+|||++...... 
T Consensus       101 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-  173 (299)
T 3m2w_A          101 ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE-  173 (299)
T ss_dssp             BHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTC-
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEEecCCCCCcEEEeccccccccccc-
Confidence            77665                      67888888      99999999999999998544589999999999765332 


Q ss_pred             cccccccCCCCcch----HHHHHHHHHhhCCCCCCCCChHHHH----HHHHhCCCCCCcccccCCCHHHHHHHHHhcccC
Q psy6046         137 EIRELLGTPDYVGK----SLGVTAYVLLTGFSPFGGETDSETF----RNISKAQLDFPDELFEDISPEAKDFIAKILIKN  208 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----SlGvil~~lltg~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  208 (379)
                               .|...    |+||++|+|++|..||.+.+.....    ..+..+...++...+..+++++.+||.+||..|
T Consensus       174 ---------~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  244 (299)
T 3m2w_A          174 ---------KYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTE  244 (299)
T ss_dssp             ---------GGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSS
T ss_pred             ---------cCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccC
Confidence                     12222    9999999999999999876554332    222333444555555679999999999999999


Q ss_pred             CCCCCCHHHHhcCccccCCc
Q psy6046         209 PMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       209 P~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+|||+.|+++||||.+..
T Consensus       245 P~~Rps~~e~l~hp~~~~~~  264 (299)
T 3m2w_A          245 PTQRMTITEFMNHPWIMQST  264 (299)
T ss_dssp             TTTSCCHHHHHTSHHHHTGG
T ss_pred             hhhCCCHHHHhcChhhcccc
Confidence            99999999999999998765

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.3e-35  Score=280.68  Aligned_cols=207  Identities=19%  Similarity=0.196  Sum_probs=163.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-CchhhH
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-RPPVYQ   82 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-~g~l~~   82 (379)
                      .+.||+|+||.||+|++..+|+.||++..........+.+|+.+++.| +||||+++++++.+   .|++||| +|+|.+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~L~~   93 (330)
T 2izr_A           14 GKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLED   93 (330)
T ss_dssp             EEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECCCCBHHH
T ss_pred             EEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeCCCCHHH
Confidence            458999999999999999999988854443344456799999999999 89999999998654   7999999 766665


Q ss_pred             H---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC--CCcEEEeecccceeeccCcc--
Q psy6046          83 A---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP--NCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        83 ~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      .                     .|+.|||+      +||+||||||+|||++.++.  ...+||+|||+++.......  
T Consensus        94 ~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~  167 (330)
T 2izr_A           94 LFDLCDRTFSLKTVLMIAIQLISRMEYVHS------KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKK  167 (330)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCC
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCc
Confidence            5                     67888888      99999999999999998621  12299999999987654321  


Q ss_pred             ------ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCCcccccCC
Q psy6046         138 ------IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       138 ------~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                            ....+||+.|+||               |+||++|+|++|..||.+.   ...+.+..+.......+.......
T Consensus       168 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  247 (330)
T 2izr_A          168 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCEN  247 (330)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred             cccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhcc
Confidence                  2457899999999               9999999999999999874   444556666554444443322222


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+++.++|.+||..||.+||+++++++
T Consensus       248 ~p~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          248 FPEMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             CHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ChHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            349999999999999999999998876

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=4.4e-35  Score=274.97  Aligned_cols=204  Identities=17%  Similarity=0.242  Sum_probs=156.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|++  +|..|| +|....     .....+.+|+.+++.++||||+++++++.+   +|+++||  +|
T Consensus        43 ~~lG~G~~g~V~~~~~--~~~~va-vK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  119 (309)
T 3p86_A           43 EKIGAGSFGTVHRAEW--HGSDVA-VKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG  119 (309)
T ss_dssp             EEEEECSSEEEEEEEE--TTEEEE-EEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTC
T ss_pred             eEeecCCCeEEEEEEE--CCCcEE-EEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCC
Confidence            4899999999999985  577777 454432     223468899999999999999999998765   7999999  66


Q ss_pred             hhhHH-----------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          79 PVYQA-----------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        79 ~l~~~-----------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +|.+.                       .|+.|||+      +|  |+||||||+||+++.+   +.+||+|||+++...
T Consensus       120 ~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~~~ivH~Dikp~NIll~~~---~~~kL~Dfg~a~~~~  190 (309)
T 3p86_A          120 SLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN------RNPPIVHRNLKSPNLLVDKK---YTVKVCDFGLSRLKA  190 (309)
T ss_dssp             BHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT------SSSCCCCTTCCGGGEEECTT---CCEEECCCC------
T ss_pred             cHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc------CCCCEECCCCChhhEEEeCC---CcEEECCCCCCcccc
Confidence            77654                       56778887      99  9999999999999875   899999999997654


Q ss_pred             cCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         134 DGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       134 ~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ... .....+||+.|+||               |+||++|+|++|..||.+.+..+....+.......+  ....+++++
T Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l  268 (309)
T 3p86_A          191 STFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLE--IPRNLNPQV  268 (309)
T ss_dssp             -----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCC--CCTTSCHHH
T ss_pred             ccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCC--CCccCCHHH
Confidence            332 23456899999999               999999999999999999988888777754433222  224689999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc--CccccC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK--HPWLMN  226 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~--hp~~~~  226 (379)
                      .+||.+||..||.+|||+.++++  .++++.
T Consensus       269 ~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          269 AAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999988  455543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1e-35  Score=281.22  Aligned_cols=211  Identities=21%  Similarity=0.210  Sum_probs=164.9

Q ss_pred             cCcCCCCceEEEEEEE-cCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCC------cceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPE-KTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEP------IEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~-~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|.+ ..+|+.|| +|.....  ..+.+.+|+.+++.++|++      ++++++++.+   +|+++||
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~   98 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVA-VKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFEL   98 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEE-EEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEE-EEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcC
Confidence            4899999999999998 45666666 5655442  2466889999999998765      8888887654   8999999


Q ss_pred             -CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC----------------
Q psy6046          77 -RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP----------------  117 (379)
Q Consensus        77 -~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~----------------  117 (379)
                       +|++.+.                      .|+.|||+      +||+||||||+||+++..+.                
T Consensus        99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~  172 (339)
T 1z57_A           99 LGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHS------NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLI  172 (339)
T ss_dssp             CCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESCCCEEEEEC----CEEEEES
T ss_pred             CCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH------CCCcCCCCCHHHEEEeccccccccCCcccccccccc
Confidence             6666554                      67888888      99999999999999986321                


Q ss_pred             CCcEEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCC
Q psy6046         118 NCDIKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQ  182 (379)
Q Consensus       118 ~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~  182 (379)
                      ++.+||+|||+++....  .....+||+.|+||               |+||++|+|++|..||.+.+..+....+....
T Consensus       173 ~~~~kl~Dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  250 (339)
T 1z57_A          173 NPDIKVVDFGSATYDDE--HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERIL  250 (339)
T ss_dssp             CCCEEECCCSSCEETTS--CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHH
T ss_pred             CCCceEeeCcccccCcc--ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Confidence            36799999999976432  34556899999999               99999999999999999888776665554322


Q ss_pred             CCCCccc----------------------------------------ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         183 LDFPDEL----------------------------------------FEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       183 ~~~~~~~----------------------------------------~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      ..+|...                                        ....++++.+||.+||..||.+|||+.|+++||
T Consensus       251 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp  330 (339)
T 1z57_A          251 GPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHP  330 (339)
T ss_dssp             CSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSG
T ss_pred             CCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCH
Confidence            2222110                                        011256789999999999999999999999999


Q ss_pred             cccCCc
Q psy6046         223 WLMNKK  228 (379)
Q Consensus       223 ~~~~~~  228 (379)
                      ||+...
T Consensus       331 ~f~~~~  336 (339)
T 1z57_A          331 FFDLLK  336 (339)
T ss_dssp             GGGGGG
T ss_pred             HHHHHh
Confidence            998654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.3e-35  Score=276.56  Aligned_cols=208  Identities=18%  Similarity=0.223  Sum_probs=163.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|++..+++.||++.....     .....+.+|+.+++.++||||+++++++.+   +|++|||  +|
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~   96 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGP   96 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSC
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCC
Confidence            4899999999999999999999885443221     123568899999999999999999998765   7999999  66


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      +|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......  
T Consensus        97 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~Dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           97 TLSEYIESHGPLSVDTAINFTNQILDGIKHAHD------MRIVHRDIKPQNILIDSN---KTLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             BHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCCSSSTTC------
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCCHHHEEECCC---CCEEEEeCCCcccccccccc
Confidence            77765                    67888888      999999999999999875   899999999997654332  


Q ss_pred             cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC-CcccccCCCHHHHHH
Q psy6046         137 EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF-PDELFEDISPEAKDF  200 (379)
Q Consensus       137 ~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~s~~~~~l  200 (379)
                      .....+||+.|+||               |+|+++|+|++|+.||.+.+..+..........+. +......+|+.+.++
T Consensus       168 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  247 (294)
T 4eqm_A          168 QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNV  247 (294)
T ss_dssp             -------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHH
T ss_pred             ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHH
Confidence            23446799999999               99999999999999999988777665555544332 233456789999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      |.+||..||.+||+..+.+.+.|..
T Consensus       248 i~~~l~~dp~~R~~~~~~l~~~l~~  272 (294)
T 4eqm_A          248 ILRATEKDKANRYKTIQEMKDDLSS  272 (294)
T ss_dssp             HHHHSCSSGGGSCSSHHHHHHHHHT
T ss_pred             HHHHhcCCHhHccccHHHHHHHHHH
Confidence            9999999999999666666666654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.1e-35  Score=290.02  Aligned_cols=210  Identities=22%  Similarity=0.336  Sum_probs=159.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-CchhhH
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-RPPVYQ   82 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-~g~l~~   82 (379)
                      ..+||+|+||+||.+ ...+|+.|| +|.......+.+.+|+.+|+.+ +||||+++++++.+   +|+++|| .|+|.+
T Consensus        20 ~~~LG~G~~g~V~~~-~~~~g~~vA-vK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~gsL~~   97 (434)
T 2rio_A           20 EKILGYGSSGTVVFQ-GSFQGRPVA-VKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQD   97 (434)
T ss_dssp             EEEEEECSTTCEEEE-EESSSSEEE-EEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSEEHHH
T ss_pred             cCeEeeCCCeEEEEE-EEECCeEEE-EEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCCCHHH
Confidence            458999999999875 456788888 5555554456788999999876 89999999998764   7999999 555444


Q ss_pred             H---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC----------CCCcEEEee
Q psy6046          83 A---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF----------PNCDIKVCD  125 (379)
Q Consensus        83 ~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~----------~~~~ikl~D  125 (379)
                      .                           .|+.|||+      +||+||||||+|||++.++          .+..+||+|
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~D  171 (434)
T 2rio_A           98 LVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS------LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD  171 (434)
T ss_dssp             HHHTC------------CCHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECC
T ss_pred             HHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH------CCccccCCChHhEEEecCcccccccccCCCceEEEEcc
Confidence            3                           56788887      9999999999999998641          246899999


Q ss_pred             cccceeeccCc-----cccccccCCCCcch----------------------HHHHHHHHHhh-CCCCCCCCChHHHHHH
Q psy6046         126 FEISRVILDGI-----EIRELLGTPDYVGK----------------------SLGVTAYVLLT-GFSPFGGETDSETFRN  177 (379)
Q Consensus       126 FG~a~~~~~~~-----~~~~~~gt~~y~aP----------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~  177 (379)
                      ||+++......     .....+||+.|+||                      |+||++|+|++ |..||.+....+  ..
T Consensus       172 FG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~  249 (434)
T 2rio_A          172 FGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SN  249 (434)
T ss_dssp             CTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HH
T ss_pred             cccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HH
Confidence            99998765432     12346799999998                      99999999999 999997765443  34


Q ss_pred             HHhCCCCCCcc---cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         178 ISKAQLDFPDE---LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       178 i~~~~~~~~~~---~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      +..+....+..   ....+++++.+||.+||..||.+|||+.++++||||...
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~~  302 (434)
T 2rio_A          250 IIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPK  302 (434)
T ss_dssp             HHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSCH
T ss_pred             HhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCCc
Confidence            44444443321   112356889999999999999999999999999999643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-36  Score=293.22  Aligned_cols=211  Identities=19%  Similarity=0.281  Sum_probs=158.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-CchhhHH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-RPPVYQA   83 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-~g~l~~~   83 (379)
                      ++||+|+||+|+. ....+|+.|| +|.........+.+|+.+|+.+ +||||+++++++.+   .|++||| .|+|.+.
T Consensus        30 ~~LG~G~~G~V~~-~~~~~~~~vA-vK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~g~L~~~  107 (432)
T 3p23_A           30 DVLGHGAEGTIVY-RGMFDNRDVA-VKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEY  107 (432)
T ss_dssp             EEEEECGGGCEEE-EEESSSSEEE-EEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHH
T ss_pred             CeeecCcCEEEEE-EEEeCCeEEE-EEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCCCCHHHH
Confidence            4899999999663 3356788888 4555444455678999999999 79999999998765   7999999 6666655


Q ss_pred             ---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC--CCcEEEeecccceeeccCc----
Q psy6046          84 ---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP--NCDIKVCDFEISRVILDGI----  136 (379)
Q Consensus        84 ---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~~~~~~~----  136 (379)
                                           .|+.|||+      +||+||||||+|||++.++.  ...+||+|||+|+......    
T Consensus       108 l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~  181 (432)
T 3p23_A          108 VEQKDFAHLGLEPITLLQQTTSGLAHLHS------LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFS  181 (432)
T ss_dssp             HHSSSCCCCSSCHHHHHHHHHHHHHHHHH------TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--------
T ss_pred             HHhcCCCccchhHHHHHHHHHHHHHHHHH------CcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCccee
Confidence                                 67888888      99999999999999975322  2468899999998765332    


Q ss_pred             cccccccCCCCcch------------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 EIRELLGTPDYVGK------------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~~~~~~gt~~y~aP------------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .....+||+.|+||                  |+||++|+|++ |..||...........+......... .....+..+
T Consensus       182 ~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  260 (432)
T 3p23_A          182 RRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLH-PEKHEDVIA  260 (432)
T ss_dssp             ----CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSC-TTCHHHHHH
T ss_pred             eccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccC-ccccccHHH
Confidence            23456799999999                  99999999999 99999766554433322222221111 112346678


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||.+||..||.+|||+.++++||||....
T Consensus       261 ~~li~~~L~~dP~~Rps~~evl~hp~f~~~~  291 (432)
T 3p23_A          261 RELIEKMIAMDPQKRPSAKHVLKHPFFWSLE  291 (432)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHTSTTTCCHH
T ss_pred             HHHHHHHHhCCHhhCCCHHHHHhCccccChH
Confidence            9999999999999999999999999997654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.1e-35  Score=275.91  Aligned_cols=199  Identities=13%  Similarity=0.128  Sum_probs=162.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE---EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE---VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~---~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+||+|+||.||+|.+..+|+.   || +|....    .....+.+|+.+++.++||||+++++++.+   .|++|||  
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  133 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVA-IKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYME  133 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEE-EEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCT
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEE-EEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCC
Confidence            4899999999999999877654   66 555443    224568999999999999999999999875   8999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....
T Consensus       134 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~  204 (325)
T 3kul_A          134 NGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSD------LGYVHRDLAARNVLVDSN---LVCKVSDFGLSRVLEDD  204 (325)
T ss_dssp             TCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCSSCEECC--
T ss_pred             CCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH------CCeeCCCCCcceEEECCC---CCEEECCCCcccccccC
Confidence            6677665                     57888888      999999999999999875   89999999999876543


Q ss_pred             cc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..    .....+|+.|+||               |+||++|+|++ |..||.+.+..+....+..+....   ....+++
T Consensus       205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~  281 (325)
T 3kul_A          205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLP---APMGCPH  281 (325)
T ss_dssp             --CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCC---CCTTCCH
T ss_pred             ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCC---CCCCcCH
Confidence            21    2233467789999               99999999999 999999999988888887763222   1236899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.+||.+||..||.+|||+.++++
T Consensus       282 ~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          282 ALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHH
Confidence            9999999999999999999999987

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=7.7e-35  Score=269.62  Aligned_cols=201  Identities=18%  Similarity=0.197  Sum_probs=161.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCCCCCcceeeeecCc-ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~v~e~-   76 (379)
                      +.||+|+||.||+|++..+++.||+ |.....          ..+.+.+|+.+++.++||||+++++++.+ .++++|| 
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~lv~e~~  103 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAI-KSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFV  103 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEE-EECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEEEEECC
T ss_pred             hccccCCceeEEEEEEcCCceEEEE-EEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeEEEEec
Confidence            4899999999999999999999885 543221          11568999999999999999999999766 7899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCC--CCcEEEeecccce
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFP--NCDIKVCDFEISR  130 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~--~~~ikl~DFG~a~  130 (379)
                       +|+|++.                     .|+.|||+      +|  |+||||||+||+++.++.  ...+||+|||+++
T Consensus       104 ~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~------~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A          104 PCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN------QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             TTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHT------SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             CCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHh------CCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence             6777665                     56788887      99  999999999999987521  1239999999997


Q ss_pred             eeccCccccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHH--HHHHHHhCCCCCCccccc
Q psy6046         131 VILDGIEIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSE--TFRNISKAQLDFPDELFE  191 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~--~~~~i~~~~~~~~~~~~~  191 (379)
                      ....  ......||+.|+||                 |+||++|+|++|..||.+.+...  ....+......  .....
T Consensus       178 ~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~  253 (287)
T 4f0f_A          178 QSVH--SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLR--PTIPE  253 (287)
T ss_dssp             CCSS--CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCC--CCCCT
T ss_pred             cccc--cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCC--CCCCc
Confidence            5432  34557799999999                 99999999999999998655433  34444443332  22334


Q ss_pred             CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         192 DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       192 ~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+++++.+||.+||..||.+|||++++++
T Consensus       254 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          254 DCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            78999999999999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.3e-35  Score=277.93  Aligned_cols=210  Identities=19%  Similarity=0.192  Sum_probs=153.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc---EEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------c
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR---EVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------P   70 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~   70 (379)
                      .+.||+|+||.||+|++..++.   .|| +|....     ...+.+.+|+.+++.++||||+++++++.+         .
T Consensus        28 ~~~lg~G~~g~Vy~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  106 (323)
T 3qup_A           28 GRMLGKGEFGSVREAQLKQEDGSFVKVA-VKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIP  106 (323)
T ss_dssp             EEEEEEETTEEEEEEEC-------CEEE-EEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CE
T ss_pred             eceecccCCeEEEEEEEcccCCcceeEE-EEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCcc
Confidence            3489999999999999888875   455 565543     234678999999999999999999998653         2


Q ss_pred             eEEeeC--CchhhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEE
Q psy6046          71 LLGLNP--RPPVYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIK  122 (379)
Q Consensus        71 ~~v~e~--~g~l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ik  122 (379)
                      |+++||  +|+|.+.                          .|+.|||+      +||+||||||+||+++.+   +.+|
T Consensus       107 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~------~~ivH~Dikp~NIli~~~---~~~k  177 (323)
T 3qup_A          107 MVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS------RNFIHRDLAARNCMLAED---MTVC  177 (323)
T ss_dssp             EEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---SCEE
T ss_pred             EEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc------CCcccCCCCcceEEEcCC---CCEE
Confidence            899999  6666543                          56788888      999999999999999875   8999


Q ss_pred             EeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCC
Q psy6046         123 VCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQL  183 (379)
Q Consensus       123 l~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~  183 (379)
                      |+|||+++.......   .....+++.|+||               |+||++|+|++ |.+||.+.+..+....+..+..
T Consensus       178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~  257 (323)
T 3qup_A          178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNR  257 (323)
T ss_dssp             ECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC
T ss_pred             EeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCC
Confidence            999999987644332   2234567789999               99999999999 9999999888888888776653


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCCCCCCC-------HHHHhcCccccCCccc
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNPMERMT-------AKEALKHPWLMNKKQI  230 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt-------~~e~l~hp~~~~~~~~  230 (379)
                      ...   ...+++++.+||.+||..||.+|||       +++++.|||+....+.
T Consensus       258 ~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~  308 (323)
T 3qup_A          258 LKQ---PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQD  308 (323)
T ss_dssp             CCC---CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC---------
T ss_pred             CCC---CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCC
Confidence            222   2368999999999999999999999       7888999999876544

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.9e-35  Score=283.63  Aligned_cols=213  Identities=18%  Similarity=0.188  Sum_probs=161.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCC-----------CCCcceeeeecC-------
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIK-----------VEPIEKYYSLDP-------   68 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~-----------hpnIv~~~~~~~-------   68 (379)
                      +.||+|+||.||+|++..+|+.|| +|.....  ....+.+|+.+++.++           ||||+++++++.       
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~va-iK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  103 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVA-MKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGV  103 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEE-EEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEE
T ss_pred             EeeeecCCeEEEEEEecCCCcEEE-EEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCc
Confidence            489999999999999999998888 5555432  2456889999999887           899999999865       


Q ss_pred             cceEEeeC-CchhhHH----------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecC---CCCcE
Q psy6046          69 EPLLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDF---PNCDI  121 (379)
Q Consensus        69 ~~~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~---~~~~i  121 (379)
                      .+++++|+ +|+|.+.                      .|+.|||+      + ||+||||||+|||++..+   ..+.+
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~------~~~ivH~Dikp~NIll~~~~~~~~~~~~  177 (373)
T 1q8y_A          104 HVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR------RCGIIHTDIKPENVLMEIVDSPENLIQI  177 (373)
T ss_dssp             EEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH------TTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             eEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh------cCCEEecCCChHHeEEeccCCCcCcceE
Confidence            37899999 6666554                      67888888      8 999999999999997542   12479


Q ss_pred             EEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC------hHHHHHHHHh
Q psy6046         122 KVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET------DSETFRNISK  180 (379)
Q Consensus       122 kl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~------~~~~~~~i~~  180 (379)
                      ||+|||++.....  .....+||+.|+||               |+||++|+|++|..||.+.+      ..+.+..+..
T Consensus       178 kl~Dfg~a~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  255 (373)
T 1q8y_A          178 KIADLGNACWYDE--HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIE  255 (373)
T ss_dssp             EECCCTTCEETTB--CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHH
T ss_pred             EEcccccccccCC--CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHH
Confidence            9999999987543  34456899999999               99999999999999998654      2222333222


Q ss_pred             CCCCCCc--------------------------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         181 AQLDFPD--------------------------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       181 ~~~~~~~--------------------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      .....|.                                      .....+++++.+||.+||..||++|||++|+|+||
T Consensus       256 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  335 (373)
T 1q8y_A          256 LLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHP  335 (373)
T ss_dssp             HHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCG
T ss_pred             hcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhCh
Confidence            1111111                                      00123467889999999999999999999999999


Q ss_pred             cccCCccc
Q psy6046         223 WLMNKKQI  230 (379)
Q Consensus       223 ~~~~~~~~  230 (379)
                      ||++....
T Consensus       336 ~f~~~~~~  343 (373)
T 1q8y_A          336 WLKDTLGM  343 (373)
T ss_dssp             GGTTCTTC
T ss_pred             hhhcccCc
Confidence            99876533

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.3e-35  Score=280.17  Aligned_cols=212  Identities=21%  Similarity=0.286  Sum_probs=148.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHH-HHHhCCCCCcceeeeecCc---ceEEeeC-Cch
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQ-LLKLIKVEPIEKYYSLDPE---PLLGLNP-RPP   79 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~-il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~   79 (379)
                      ...||+|+||.||+|.+..+|+.||++.....   .....+.+|+. +++.++||||+++++++.+   .|+++|| .|.
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~~  106 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTS  106 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSEE
T ss_pred             hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCCC
Confidence            34799999999999999999998885433322   12234556665 7888999999999998654   7899999 544


Q ss_pred             hhHH-------------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          80 VYQA-------------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        80 l~~~-------------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +.+.                         .|+.|||+      . ||+||||||+||+++.+   +.+||+|||+++...
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~~ivH~dlkp~NIll~~~---~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          107 FDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE------NLKIIHRDIKPSNILLDRS---GNIKLCDFGISGQLV  177 (327)
T ss_dssp             HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH------HHSCCCSCCCGGGEEEETT---TEEEECCCSSSCC--
T ss_pred             hHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc------cCCEeECCCCHHHEEEcCC---CCEEEccCCCceecc
Confidence            3222                         56788887      8 99999999999999875   899999999998765


Q ss_pred             cCccccccccCCCCcch-------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCC-CCCCcccccC
Q psy6046         134 DGIEIRELLGTPDYVGK-------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQ-LDFPDELFED  192 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP-------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~-~~~~~~~~~~  192 (379)
                      .........||+.|+||                   |+|+++|+|++|..||.+.+. .+.+..+..+. ..++...+..
T Consensus       178 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (327)
T 3aln_A          178 DSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEERE  257 (327)
T ss_dssp             ----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCC
T ss_pred             cccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCccccc
Confidence            54444555799999999                   999999999999999986432 22232222222 2233333456


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +++.+.+||.+||..||.+|||+.++++||||....
T Consensus       258 ~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          258 FSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence            899999999999999999999999999999997654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1e-34  Score=266.46  Aligned_cols=199  Identities=16%  Similarity=0.141  Sum_probs=164.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|.+.. ++.|| +|....  ...+.+.+|+.+++.++||||+++++++.+   .|++|||  +|+|.
T Consensus        16 ~~lg~G~~g~V~~~~~~~-~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   93 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLN-KDKVA-IKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS   93 (269)
T ss_dssp             EEEEECSSCEEEEEEETT-TEEEE-EEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred             heecCCCccEEEEEEecC-CCeEE-EEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHH
Confidence            489999999999999874 55666 454433  234679999999999999999999999765   7999999  66666


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      +.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.......  ..
T Consensus        94 ~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~~  164 (269)
T 4hcu_A           94 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEE------ACVIHRDLAARNCLVGEN---QVIKVSDFGMTRFVLDDQYTSS  164 (269)
T ss_dssp             HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECGG---GCEEECCTTGGGGBCCHHHHST
T ss_pred             HHHHhcCcccCHHHHHHHHHHHHHHHHHHHh------CCeecCCcchheEEEcCC---CCEEeccccccccccccccccc
Confidence            55                     56788888      999999999999999876   789999999997654322  23


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+|+.|+||               |+|+++|+|++ |.+||.+.+..+....+..+.....+   ..+++.+.++|.
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~  241 (269)
T 4hcu_A          165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP---RLASTHVYQIMN  241 (269)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCC---TTSCHHHHHHHH
T ss_pred             cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCC---CcCCHHHHHHHH
Confidence            345567889999               99999999999 99999999999888888876433322   357999999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q psy6046         203 KILIKNPMERMTAKEALKH  221 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +||..||.+|||+.++++|
T Consensus       242 ~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          242 HCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHccCCcccCcCHHHHHHH
Confidence            9999999999999999984

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=5.7e-35  Score=274.16  Aligned_cols=210  Identities=18%  Similarity=0.223  Sum_probs=150.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc----chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ----GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~----~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      ..||+|+||.||+|++..+|+.||++.......    ...+..+..+++.++||||+++++++.+   +|+++|| ++.+
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  110 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCA  110 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCSEEH
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEeccCCcH
Confidence            479999999999999999999888543332211    1234455567889999999999998754   7999999 3222


Q ss_pred             hHH---------------------HHHHHHhcccCCCCC-CeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLM-DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~-~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      ...                     .|+.|||.      . ||+||||||+||+++.+   +.+||+|||++.........
T Consensus       111 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~~i~H~dlkp~Nil~~~~---~~~kl~dfg~~~~~~~~~~~  181 (318)
T 2dyl_A          111 EKLKKRMQGPIPERILGKMTVAIVKALYYLKE------KHGVIHRDVKPSNILLDER---GQIKLCDFGISGRLVDDKAK  181 (318)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------HHCCCCCCCCGGGEEECTT---SCEEECCCTTC---------
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh------hCCEEeCCCCHHHEEECCC---CCEEEEECCCchhccCCccc
Confidence            111                     56778887      6 99999999999999875   89999999999876555555


Q ss_pred             cccccCCCCcch--------------------HHHHHHHHHhhCCCCCCC-CChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         139 RELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGG-ETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       139 ~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ....||+.|+||                    |+|+++|+|++|..||.. .+..+....+..+.....+ ....+++++
T Consensus       182 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l  260 (318)
T 2dyl_A          182 DRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLP-GHMGFSGDF  260 (318)
T ss_dssp             -----CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCC-SSSCCCHHH
T ss_pred             cccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCC-ccCCCCHHH
Confidence            566799999999                    999999999999999986 4555666666665433222 223689999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+||.+||..||.+|||++++++||||+...
T Consensus       261 ~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (318)
T 2dyl_A          261 QSFVKDCLTKDHRKRPKYNKLLEHSFIKRYE  291 (318)
T ss_dssp             HHHHHHHTCSCTTTSCCHHHHTTSHHHHHHH
T ss_pred             HHHHHHHccCChhHCcCHHHHhhCHHHHhcc
Confidence            9999999999999999999999999997644

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.1e-34  Score=279.09  Aligned_cols=199  Identities=17%  Similarity=0.124  Sum_probs=162.4

Q ss_pred             cCcCCCCceEEEEEEEcC-------CCcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKT-------TKREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-------tg~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v   73 (379)
                      +.||+|+||.||+|++..       ++..|| +|.....    ....+.+|+.+|+.+ +||||+++++++.+   +|++
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv  165 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVA-VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI  165 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEE-EEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEE-EEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEE
Confidence            479999999999998753       333455 6665432    235689999999999 89999999998765   8999


Q ss_pred             eeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec
Q psy6046          74 LNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD  115 (379)
Q Consensus        74 ~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~  115 (379)
                      +||  +|+|.+.                                    .|+.|||+      +||+||||||+|||++.+
T Consensus       166 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~  239 (370)
T 2psq_A          166 VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS------QKCIHRDLAARNVLVTEN  239 (370)
T ss_dssp             EECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT
T ss_pred             EEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh------CCeeccccchhhEEECCC
Confidence            999  5666432                                    56788888      999999999999999875


Q ss_pred             CCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHH
Q psy6046         116 FPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFR  176 (379)
Q Consensus       116 ~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~  176 (379)
                         +.+||+|||+++......   ......+|+.|+||               |+||++|+|++ |..||.+.+..+...
T Consensus       240 ---~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~  316 (370)
T 2psq_A          240 ---NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK  316 (370)
T ss_dssp             ---CCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH
T ss_pred             ---CCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence               899999999998765432   12334578899999               99999999999 999999988888888


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+..+....   ....+++++.+||.+||..||.+|||+.|+++
T Consensus       317 ~~~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~  357 (370)
T 2psq_A          317 LLKEGHRMD---KPANCTNELYMMMRDCWHAVPSQRPTFKQLVE  357 (370)
T ss_dssp             HHHTTCCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHhcCCCCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            777764322   22368999999999999999999999999987

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=7.3e-35  Score=274.65  Aligned_cols=200  Identities=21%  Similarity=0.274  Sum_probs=164.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc---------cchHHHHHHHHHHhCC--CCCcceeeeecCc---ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS---------QGVVIVDEEQLLKLIK--VEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---------~~~~~~~E~~il~~l~--hpnIv~~~~~~~~---~~~v~   74 (379)
                      ++||+|+||.||+|++..+|+.||+ |.....         ....+.+|+.+++.++  ||||+++++++.+   .++++
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~  127 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAI-KHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLIL  127 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEE-EEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEE-EEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEE
Confidence            4899999999999999999988885 443321         2245788999999997  5999999998765   78999


Q ss_pred             eC--C-chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          75 NP--R-PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        75 e~--~-g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |+  + ++|.+.                    .|+.|||+      .||+||||||+||+++.+  .+.+||+|||+++.
T Consensus       128 e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~--~~~~kL~Dfg~~~~  199 (320)
T 3a99_A          128 ERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN------CGVLHRDIKDENILIDLN--RGELKLIDFGSGAL  199 (320)
T ss_dssp             ECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEETT--TTEEEECCCTTCEE
T ss_pred             EcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCcEeCCCCHHHEEEeCC--CCCEEEeeCccccc
Confidence            99  2 666655                    67888888      999999999999999833  37999999999987


Q ss_pred             eccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         132 ILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      .... ......||+.|+||                |+|+++|+|++|+.||....      .+..+...++    ..+++
T Consensus       200 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~----~~~~~  268 (320)
T 3a99_A          200 LKDT-VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFR----QRVSS  268 (320)
T ss_dssp             CCSS-CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCS----SCCCH
T ss_pred             cccc-cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------hhhccccccc----ccCCH
Confidence            6543 34556799999999                99999999999999997532      2333444433    35899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++.+||.+||..||.+|||++++++||||++..
T Consensus       269 ~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  301 (320)
T 3a99_A          269 ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL  301 (320)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcCHhhcCcc
Confidence            999999999999999999999999999998764

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=8.2e-35  Score=280.63  Aligned_cols=200  Identities=14%  Similarity=0.086  Sum_probs=164.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .+.||+|+||.||+|++..+|+.||+ |.....    ....+.+|+.+|+.++||||+++++++.+   +|++|||  +|
T Consensus       119 ~~~lG~G~~g~V~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g  197 (377)
T 3cbl_A          119 GEQIGRGNFGEVFSGRLRADNTLVAV-KSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG  197 (377)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEE-EECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             eeEeccCCCCeEEEEEEecCCeEEEE-EEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCC
Confidence            34899999999999999999988884 544332    23468899999999999999999999765   7999999  67


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.......
T Consensus       198 ~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivHrDlkp~Nil~~~~---~~~kl~DfG~s~~~~~~~~  268 (377)
T 3cbl_A          198 DFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES------KCCIHRDLAARNCLVTEK---NVLKISDFGMSREEADGVY  268 (377)
T ss_dssp             BHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCGGGCEECTTSEE
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCcCCcccCHHHEEEcCC---CcEEECcCCCceecCCCce
Confidence            77665                     57888888      999999999999999875   8999999999987543321


Q ss_pred             c---cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 I---RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 ~---~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .   ....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+.....   ...+++++.
T Consensus       269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~  345 (377)
T 3cbl_A          269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPC---PELCPDAVF  345 (377)
T ss_dssp             ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCC---CTTCCHHHH
T ss_pred             eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---CCCCCHHHH
Confidence            1   122356789999               99999999998 9999999888888777776542211   235899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||.+||..||.+|||+.++++
T Consensus       346 ~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          346 RLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHcCCCchhCcCHHHHHH
Confidence            9999999999999999999976

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.6e-35  Score=275.48  Aligned_cols=201  Identities=15%  Similarity=0.112  Sum_probs=163.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEE---EEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREV---VQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.+   +++|....    .....+.+|+.+++.++||||+++++++.+  .++++||  +
T Consensus        19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~   98 (325)
T 3kex_A           19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPL   98 (325)
T ss_dssp             EEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECCTT
T ss_pred             eeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeCCC
Confidence            38999999999999999988763   23454432    223567899999999999999999999765  7899999  6


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus        99 ~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dikp~Nil~~~~---~~~kl~Dfg~a~~~~~~~  169 (325)
T 3kex_A           99 GSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE------HGMVHRNLAARNVLLKSP---SQVQVADFGVADLLPPDD  169 (325)
T ss_dssp             CBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHH------TTCCCSCCSSTTEEESSS---SCEEECSCSGGGGSCCCT
T ss_pred             CCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHh------CCCCCCccchheEEECCC---CeEEECCCCcccccCccc
Confidence            777665                     67888888      999999999999999875   899999999998764332


Q ss_pred             ---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 ---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                         ......||+.|+||               |+||++|+|++ |..||.+.+..+....+..+.....+   ..+++++
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  246 (325)
T 3kex_A          170 KQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQP---QICTIDV  246 (325)
T ss_dssp             TCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCC---TTBCTTT
T ss_pred             ccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCC---CcCcHHH
Confidence               23445678899999               99999999999 99999998888887777776433222   2478899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .++|.+||..||.+|||+.++++|
T Consensus       247 ~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          247 YMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             THHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999999999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=272.55  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=162.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---------cchHHHHHHHHHHhC----CCCCcceeeeecCc---ce
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---------QGVVIVDEEQLLKLI----KVEPIEKYYSLDPE---PL   71 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---------~~~~~~~E~~il~~l----~hpnIv~~~~~~~~---~~   71 (379)
                      .+.||+|+||.||+|++..+|+.|| +|.....         ....+.+|+.+++.+    +||||+++++++.+   .+
T Consensus        36 ~~~lg~G~~g~Vy~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~  114 (312)
T 2iwi_A           36 GPLLGKGGFGTVFAGHRLTDRLQVA-IKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFM  114 (312)
T ss_dssp             EEEEEEETTEEEEEEECTTTCCEEE-EEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CE
T ss_pred             eeEEEcCCCEEEEEEEEccCCeEEE-EEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEE
Confidence            3489999999999999999999888 4554332         234467899999999    89999999998764   78


Q ss_pred             EEeeC---CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          72 LGLNP---RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        72 ~v~e~---~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      +++|+   +|+|.+.                    .|+.|||+      +||+||||||+||+++..  ++.+||+|||+
T Consensus       115 ~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~--~~~~kl~dfg~  186 (312)
T 2iwi_A          115 LVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHS------RGVVHRDIKDENILIDLR--RGCAKLIDFGS  186 (312)
T ss_dssp             EEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------HTEECCCCSGGGEEEETT--TTEEEECCCSS
T ss_pred             EEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecCCChhhEEEeCC--CCeEEEEEcch
Confidence            89987   5666655                    67888888      999999999999999832  38999999999


Q ss_pred             ceeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccC
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      +...... ......||+.|+||                |+|+++|+|++|+.||.+..      .+......++.    .
T Consensus       187 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~----~  255 (312)
T 2iwi_A          187 GALLHDE-PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELHFPA----H  255 (312)
T ss_dssp             CEECCSS-CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHTCCCCCT----T
T ss_pred             hhhcccC-cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhhhccCCcc----c
Confidence            9876543 34566799999999                99999999999999997532      23334444443    5


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      +++.+.+||.+||..||.+|||++|+++||||+.....
T Consensus       256 ~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~~~  293 (312)
T 2iwi_A          256 VSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAED  293 (312)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC----
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCchhc
Confidence            89999999999999999999999999999999876543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.1e-34  Score=267.99  Aligned_cols=200  Identities=16%  Similarity=0.154  Sum_probs=152.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc---EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR---EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      .+.||+|+||.||+|.+..++.   .+| +|....    ...+.+.+|+.+++.++||||+++++++.+  .|++|||  
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~   98 (281)
T 1mp8_A           20 GRCIGEGQFGDVHQGIYMSPENPALAVA-IKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCT   98 (281)
T ss_dssp             EEEEEECSSSEEEEEEECCC--CCEEEE-EEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred             EeEeeecCCeeEEEEEEecCCCCceEEE-EEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCC
Confidence            3489999999999999876543   355 565443    224568899999999999999999998765  7999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.....
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~  169 (281)
T 1mp8_A           99 LGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES------KRFVHRDIAARNVLVSSN---DCVKLGDFGLSRYMEDS  169 (281)
T ss_dssp             TEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECC----------
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecccccHHHEEECCC---CCEEECccccccccCcc
Confidence            5666655                     56888888      999999999999999986   89999999999876543


Q ss_pred             cc--ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         136 IE--IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       136 ~~--~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      ..  .....+|+.|+||               |+|+++|+|++ |.+||.+.+..+....+..+....   ....+++.+
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~---~~~~~~~~l  246 (281)
T 1mp8_A          170 TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP---MPPNCPPTL  246 (281)
T ss_dssp             ---------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC---CCTTCCHHH
T ss_pred             cccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCC---CCCCCCHHH
Confidence            32  2234567889999               99999999996 999999988888888887664322   224689999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .++|.+||..||.+|||+.++++
T Consensus       247 ~~li~~~l~~~p~~Rps~~~l~~  269 (281)
T 1mp8_A          247 YSLMTKCWAYDPSRRPRFTELKA  269 (281)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHccCChhhCcCHHHHHH
Confidence            99999999999999999999987

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=6.3e-35  Score=275.91  Aligned_cols=201  Identities=15%  Similarity=0.107  Sum_probs=159.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEE---EEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREV---VQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.+   +++|....    .....+.+|+.+++.++||||+++++++.+  .++++|+  +
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~  100 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPF  100 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEEEECCTT
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            48999999999999998888765   23555432    234678999999999999999999998754  7788888  6


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |++.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       101 g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivH~Dikp~NIll~~~---~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A          101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED------RRLVHRDLAARNVLVKTP---QHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             CBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEEET---TEEEECCTTHHHHHTTTC
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh------CCeeCCCCChheEEECCC---CCEEEccCcceeEccCCc
Confidence            777665                     67888888      999999999999999986   899999999998764433


Q ss_pred             c---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 E---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .   .....+|+.|+||               |+||++|+|++ |..||.+.+..+....+..+.....   ...++.++
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  248 (327)
T 3poz_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ---PPICTIDV  248 (327)
T ss_dssp             C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCC---CTTBCHHH
T ss_pred             ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCC---CccCCHHH
Confidence            2   2234568899999               99999999999 9999999888777777766543222   23589999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+++.+||..||.+|||+.+++++
T Consensus       249 ~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          249 YMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             HHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             HHHHHHHcCCChhhCCCHHHHHHH
Confidence            999999999999999999999875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.7e-34  Score=268.49  Aligned_cols=207  Identities=18%  Similarity=0.201  Sum_probs=165.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC-CchhhH
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP-RPPVYQ   82 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~-~g~l~~   82 (379)
                      .+.||+|+||.||+|++..+|+.||++..........+.+|+.+++.+ +||+++++++++.+   .|+++|+ +|+|.+
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~   94 (298)
T 1csn_A           15 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLED   94 (298)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCCCBHHH
T ss_pred             EEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEecCCCHHH
Confidence            358999999999999999999988854444445556799999999999 79999999888654   7899999 777766


Q ss_pred             H---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC--CCCcEEEeecccceeeccCc---
Q psy6046          83 A---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF--PNCDIKVCDFEISRVILDGI---  136 (379)
Q Consensus        83 ~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~--~~~~ikl~DFG~a~~~~~~~---  136 (379)
                      .                     .|+.|||+      +||+||||||+||+++.++  ....+||+|||+++......   
T Consensus        95 ~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  168 (298)
T 1csn_A           95 LLDLCGRKFSVKTVAMAAKQMLARVQSIHE------KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQ  168 (298)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCC
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccc
Confidence            5                     56777777      9999999999999998752  12449999999998765432   


Q ss_pred             -----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC---ChHHHHHHHHhCCCCCC-cccccC
Q psy6046         137 -----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE---TDSETFRNISKAQLDFP-DELFED  192 (379)
Q Consensus       137 -----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~---~~~~~~~~i~~~~~~~~-~~~~~~  192 (379)
                           ......||+.|+||               |+|+++|+|++|+.||.+.   ...+.+..+.......+ ......
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (298)
T 1csn_A          169 HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAG  248 (298)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred             cccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhh
Confidence                 13456799999999               9999999999999999874   34455555444322222 233457


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +|+++.+||.+||..||.+|||++++++
T Consensus       249 ~~~~l~~li~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          249 FPEEFYKYMHYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             SCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence            8999999999999999999999999987

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=5.9e-34  Score=261.04  Aligned_cols=200  Identities=17%  Similarity=0.126  Sum_probs=165.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ...||+|+||.||+|.+. ++..|| +|....  .....+.+|+.+++.++||||+++++++.+   .|+++||  +|+|
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (268)
T 3sxs_A           13 LKELGSGQFGVVKLGKWK-GQYDVA-VKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCL   90 (268)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEE-EEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBH
T ss_pred             eeeeccCCCceEEEEEec-CceeEE-EEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcH
Confidence            348999999999999876 455566 455443  234668999999999999999999999765   7999999  6666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      .+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++........  
T Consensus        91 ~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~~l~Dfg~~~~~~~~~~~~  161 (268)
T 3sxs_A           91 LNYLRSHGKGLEPSQLLEMCYDVCEGMAFLES------HQFIHRDLAARNCLVDRD---LCVKVSDFGMTRYVLDDQYVS  161 (268)
T ss_dssp             HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH------TTEEESSCSGGGEEECTT---CCEEECCTTCEEECCTTCEEE
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCcCcceEEECCC---CCEEEccCccceecchhhhhc
Confidence            654                     67888888      999999999999999875   8999999999987654432  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+|+.|+||               |+|+++|+|++ |..||.+.+..+....+..+.....+   ..+++.+.++|
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~li  238 (268)
T 3sxs_A          162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRP---HLASDTIYQIM  238 (268)
T ss_dssp             CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCC---TTSCHHHHHHH
T ss_pred             ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCC---CcChHHHHHHH
Confidence            2234466789999               99999999999 99999999888888888776544433   25799999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy6046         202 AKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||..||.+|||+.+++++
T Consensus       239 ~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          239 YSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             HHTTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCChhhCcCHHHHHHH
Confidence            99999999999999999985

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.4e-34  Score=273.24  Aligned_cols=210  Identities=12%  Similarity=0.129  Sum_probs=166.2

Q ss_pred             cCcCCCCceEEEEEE-----EcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKP-----EKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~-----~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|+     +..++..|| +|....    .....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  114 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVA-VKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMEL  114 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEE-EEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEE-EEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEec
Confidence            489999999999999     556777787 455432    223568899999999999999999999765   7999999


Q ss_pred             --CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 --RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 --~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                        +|+|.+.                           .|+.|||+      +||+||||||+||+++.++.+..+||+|||
T Consensus       115 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~------~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg  188 (327)
T 2yfx_A          115 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE------NHFIHRDIAARNCLLTCPGPGRVAKIGDFG  188 (327)
T ss_dssp             CTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             CCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh------CCeecCcCCHhHEEEecCCCcceEEECccc
Confidence              5666544                           56788888      999999999999999966445789999999


Q ss_pred             cceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         128 ISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       128 ~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      ++.......   ......||+.|+||               |+|+++|+|++ |..||.+.+..+....+..+....+. 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~-  267 (327)
T 2yfx_A          189 MARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPP-  267 (327)
T ss_dssp             HHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCC-
T ss_pred             cccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCC-
Confidence            997553322   22345678999999               99999999998 99999998888888888776543322 


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                        ..+++.+.++|.+||..||.+|||+.++++|+|+....
T Consensus       268 --~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          268 --KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence              36899999999999999999999999999999875443

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=4.7e-34  Score=263.79  Aligned_cols=199  Identities=17%  Similarity=0.135  Sum_probs=161.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|.+. ++..|| +|.....  ....+.+|+.+++.++||||+++++++.+   .|+++||  +|+|.
T Consensus        30 ~~lg~G~~g~V~~~~~~-~~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  107 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWR-GQYDVA-IKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLL  107 (283)
T ss_dssp             EECC---CEEEEEEEET-TTEEEE-EEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHH
T ss_pred             hhcCCCCCceEEEEEEc-CCCeEE-EEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHH
Confidence            48999999999999876 455666 4554432  34678999999999999999999998765   7999999  66776


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      +.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......  ..
T Consensus       108 ~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dikp~Nili~~~---~~~kl~Dfg~~~~~~~~~~~~~  178 (283)
T 3gen_A          108 NYLREMRHRFQTQQLLEMCKDVCEAMEYLES------KQFLHRDLAARNCLVNDQ---GVVKVSDFGLSRYVLDDEYTSS  178 (283)
T ss_dssp             HHHHCGGGCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSSCSGGGEEECTT---SCEEECSTTGGGGBCCHHHHST
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHH------CCccCCCCccceEEEcCC---CCEEEccccccccccccccccc
Confidence            65                     57788888      999999999999999875   899999999997654322  12


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+|+.|+||               |+|+++|+|++ |..||.+.+..+....+..+.....+   ..+++.+.++|.
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~li~  255 (283)
T 3gen_A          179 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP---HLASEKVYTIMY  255 (283)
T ss_dssp             TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCC---TTCCHHHHHHHH
T ss_pred             cCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCC---CcCCHHHHHHHH
Confidence            334567789999               99999999998 99999999988888888876544333   357899999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q psy6046         203 KILIKNPMERMTAKEALKH  221 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +||..||.+|||+.++++|
T Consensus       256 ~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          256 SCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             HTTCSSGGGSCCHHHHHHH
T ss_pred             HHccCChhHCcCHHHHHHH
Confidence            9999999999999999985

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=279.94  Aligned_cols=208  Identities=21%  Similarity=0.212  Sum_probs=164.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      ..++||+|+||.||+|++..+|+.||+ |....    ...+.+.+|+.+++.++||||+++++++.+     .|++||| 
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vai-K~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~   91 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAI-KVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCC
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEE-EEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecC
Confidence            345899999999999999999998884 54433    234568899999999999999999998643     6899999 


Q ss_pred             -CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec-CCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG~a~~  131 (379)
                       +|+|.+.                       .|+.|||+      +||+||||||+|||+... +.++.+||+|||+++.
T Consensus        92 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~  165 (396)
T 4eut_A           92 PCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE------NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (396)
T ss_dssp             TTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred             CCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH------CCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence             6666654                       67888888      999999999999998322 1236799999999998


Q ss_pred             eccCccccccccCCCCcch-----------------------HHHHHHHHHhhCCCCCCC----CChHHHHHHHHhCCCC
Q psy6046         132 ILDGIEIRELLGTPDYVGK-----------------------SLGVTAYVLLTGFSPFGG----ETDSETFRNISKAQLD  184 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP-----------------------SlGvil~~lltg~~Pf~~----~~~~~~~~~i~~~~~~  184 (379)
                      ..........+||+.|+||                       |+||++|+|++|+.||.+    ....+.+..+..+...
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~  245 (396)
T 4eut_A          166 LEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPS  245 (396)
T ss_dssp             CCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCT
T ss_pred             ccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCc
Confidence            7666666677899999999                       999999999999999964    3345566666655432


Q ss_pred             C---------------------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 F---------------------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~---------------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .                     +......+++.+.++|.+||..||++|||+.+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          246 GAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             TCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             ccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            1                     111112345678999999999999999999998653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=4e-34  Score=285.45  Aligned_cols=199  Identities=18%  Similarity=0.131  Sum_probs=166.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|+++.++..|| +|....  ...+.+.+|+.+|+.++||||+++++++.+   +|++|||  +|+|.
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~  304 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVA-VKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL  304 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEE-EEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEE-EEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHH
Confidence            489999999999999999898888 455443  245679999999999999999999999764   8999999  67776


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      +.                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.......  
T Consensus       305 ~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~~~~  375 (495)
T 1opk_A          305 DYLRECNRQEVSAVVLLYMATQISSAMEYLEK------KNFIHRNLAARNCLVGEN---HLVKVADFGLSRLMTGDTYTA  375 (495)
T ss_dssp             HHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECGG---GCEEECCTTCEECCTTCCEEC
T ss_pred             HHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCChhhEEECCC---CcEEEeecccceeccCCceee
Confidence            65                      56788888      999999999999999876   8999999999987644321  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+... +  .+..+++.+.+||
T Consensus       376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~l~~li  452 (495)
T 1opk_A          376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM-E--RPEGCPEKVYELM  452 (495)
T ss_dssp             CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC-C--CCTTCCHHHHHHH
T ss_pred             cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-C--CCCCCCHHHHHHH
Confidence            2234467789999               99999999999 99999998887777777665322 1  2246899999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy6046         202 AKILIKNPMERMTAKEALK  220 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||..||.+|||+.++++
T Consensus       453 ~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          453 RACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcCcChhHCcCHHHHHH
Confidence            9999999999999999987

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=271.75  Aligned_cols=200  Identities=15%  Similarity=0.098  Sum_probs=157.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEE---EEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVV---QWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a---~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      .+||+|+||.||+|++..+|+.++   ++|....    .....+.+|+.+++.++||||+++++++.+  .++++++  +
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v~~~~~~  100 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPF  100 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEEECCCSS
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEEEEecCC
Confidence            489999999999999999987652   3454322    334678999999999999999999998654  7788888  6


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |++.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       101 g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NIl~~~~---~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A          101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED------RRLVHRDLAARNVLVKTP---QHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEEET---TEEEECCTTC--------
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh------CCCcCCCCCHHHEEEcCC---CCEEEccCcceeEccCcc
Confidence            677665                     57788888      999999999999999886   899999999998764332


Q ss_pred             c---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         137 E---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       137 ~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .   .....+|+.|+||               |+||++|+|++ |..||.+.+..+....+..+.....   ...+++++
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l  248 (327)
T 3lzb_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ---PPICTIDV  248 (327)
T ss_dssp             --------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCC---CTTBCHHH
T ss_pred             ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCC---CccCCHHH
Confidence            2   2334567889999               99999999999 9999999888877777766543222   23589999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||.+||..||.+|||+.++++
T Consensus       249 ~~li~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          249 YMIMRKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCChhHCcCHHHHHH
Confidence            99999999999999999999987

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=5.4e-34  Score=261.55  Aligned_cols=202  Identities=17%  Similarity=0.159  Sum_probs=157.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      .++||+|+||.||+|.+.  |+.+| +|....       ...+.+.+|+.+++.++||||+++++++.+   .|+++|| 
T Consensus        12 ~~~lg~G~~g~V~~~~~~--~~~va-vK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (271)
T 3dtc_A           12 EEIIGIGGFGKVYRAFWI--GDEVA-VKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFA   88 (271)
T ss_dssp             EEEEEEETTEEEEEEEET--TEEEE-EEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECC
T ss_pred             eeeeccCCCeEEEEEEEc--CCeEE-EEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcC
Confidence            458999999999999964  77777 454432       123568899999999999999999998765   7999999 


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCCC---eEeCCCCCCcEEEeecCC-----CCcEEEeeccc
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLMD---FIFFFLQPQNLVMMGDFP-----NCDIKVCDFEI  128 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~~---ivHrDlkp~Nill~~~~~-----~~~ikl~DFG~  128 (379)
                       +|++...                   .|+.|||+      +|   |+||||||+||+++....     ++.+||+|||+
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~------~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~  162 (271)
T 3dtc_A           89 RGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHD------EAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL  162 (271)
T ss_dssp             TTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHH------SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred             CCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh------CCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence             5666554                   67888888      98   999999999999986321     47899999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      +....... .....||+.|+||               |+|+++|+|++|+.||.+.+.......+.......+.  ...+
T Consensus       163 ~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~  239 (271)
T 3dtc_A          163 AREWHRTT-KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPI--PSTC  239 (271)
T ss_dssp             --------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCC--CTTC
T ss_pred             cccccccc-ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCC--Cccc
Confidence            98664432 3356799999999               9999999999999999998888777777766544332  2468


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ++.+.++|.+||..||.+|||+.|++++
T Consensus       240 ~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          240 PEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            9999999999999999999999999874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.5e-34  Score=267.00  Aligned_cols=207  Identities=15%  Similarity=0.125  Sum_probs=161.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC-CchhhH
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP-RPPVYQ   82 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~-~g~l~~   82 (379)
                      .+.||+|+||.||+|++..+|+.||++..........+.+|+.+++.++|++++..+..+.    ..|+++|| +|+|.+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~   93 (296)
T 3uzp_A           14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLED   93 (296)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCCCBHHH
T ss_pred             EEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEecCCCHHH
Confidence            3589999999999999999999888544444445567999999999999999777665542    26899999 666665


Q ss_pred             H---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc----
Q psy6046          83 A---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE----  137 (379)
Q Consensus        83 ~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~----  137 (379)
                      .                     .|+.|||+      +||+||||||+||+++....++.+||+|||++........    
T Consensus        94 ~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  167 (296)
T 3uzp_A           94 LFNFCSRKFSLKTVLLLADQMISRIEYIHS------KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHI  167 (296)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBC
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHh------CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccc
Confidence            5                     67888888      9999999999999996322248999999999987654322    


Q ss_pred             ----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC---hHHHHHHHHhCCCCCC-cccccCCC
Q psy6046         138 ----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET---DSETFRNISKAQLDFP-DELFEDIS  194 (379)
Q Consensus       138 ----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~---~~~~~~~i~~~~~~~~-~~~~~~~s  194 (379)
                          .....||+.|+||               |+||++|+|++|+.||.+.+   ..+.+..+.......+ ......+|
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (296)
T 3uzp_A          168 PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYP  247 (296)
T ss_dssp             CCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSC
T ss_pred             ccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCC
Confidence                2456799999999               99999999999999998633   2234444433333333 22334689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +++.+||.+||..||.+|||++++++
T Consensus       248 ~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          248 SEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence            99999999999999999999999987

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=269.00  Aligned_cols=204  Identities=13%  Similarity=0.145  Sum_probs=160.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..++||+|+||.||+|.+..+|+.||+++....  .....+.+|+.+++.++||||+++++++.+   .|+++||  +|+
T Consensus        14 ~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~   93 (310)
T 3s95_A           14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGT   93 (310)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             ccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCc
Confidence            445899999999999999999999885544332  334668999999999999999999998754   8999999  667


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      |.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++........
T Consensus        94 L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~  164 (310)
T 3s95_A           94 LRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHS------MNIIHRDLNSHNCLVREN---KNVVVADFGLARLMVDEKTQ  164 (310)
T ss_dssp             HHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSTTSEEECTT---SCEEECCCTTCEECC-----
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCCcCeEEECCC---CCEEEeecccceeccccccc
Confidence            7655                     67888888      999999999999999875   88999999999876432211


Q ss_pred             ---------------cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHH-----HHHHHHhCCC
Q psy6046         139 ---------------RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSE-----TFRNISKAQL  183 (379)
Q Consensus       139 ---------------~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~-----~~~~i~~~~~  183 (379)
                                     ...+||+.|+||               |+|+++|+|++|..||.......     ......... 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-  243 (310)
T 3s95_A          165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRY-  243 (310)
T ss_dssp             ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHT-
T ss_pred             ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccccc-
Confidence                           156799999999               99999999999999986532210     011111111 


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                       .    ...+++.+.++|.+||..||.+|||+.++++  |+...
T Consensus       244 -~----~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~--~L~~l  280 (310)
T 3s95_A          244 -C----PPNCPPSFFPITVRCCDLDPEKRPSFVKLEH--WLETL  280 (310)
T ss_dssp             -C----CTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH--HHHHH
T ss_pred             -C----CCCCCHHHHHHHHHHccCChhhCcCHHHHHH--HHHHH
Confidence             1    1357899999999999999999999999988  66543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.1e-34  Score=264.70  Aligned_cols=200  Identities=17%  Similarity=0.119  Sum_probs=165.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+..++..||++..... ...+.+.+|+.+++.++||||+++++++.+   +|+++|+  +|+|.+
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~   98 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD   98 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHH
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHH
Confidence            4899999999999999999988885433322 334678999999999999999999998765   7999999  567665


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      .                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.......  ..
T Consensus        99 ~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~~l~Dfg~~~~~~~~~~~~~  169 (288)
T 3kfa_A           99 YLRECNRQEVSAVVLLYMATQISSAMEYLEK------KNFIHRDLAARNCLVGEN---HLVKVADFGLSRLMTGDTYTAH  169 (288)
T ss_dssp             HHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH------HTCCCSCCSGGGEEECGG---GCEEECCCCGGGTSCSSSSEEE
T ss_pred             HHHhcccCCccHhHHHHHHHHHHHHHHHHHH------CCccCCCCCcceEEEcCC---CCEEEccCccceeccCCccccc
Confidence            5                      56778887      999999999999999876   789999999998654332  22


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+|+.|+||               |+|+++|+|++ |.+||.+.+.......+.......   ....+++.+.+||.
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~  246 (288)
T 3kfa_A          170 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME---RPEGCPEKVYELMR  246 (288)
T ss_dssp             TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCC---CCTTCCHHHHHHHH
T ss_pred             cCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCC---CCCCCCHHHHHHHH
Confidence            335578889999               99999999999 999999888877777776653221   22468999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..||.+|||+.++++
T Consensus       247 ~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          247 ACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHhCCChhhCcCHHHHHH
Confidence            999999999999999977

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=264.92  Aligned_cols=202  Identities=17%  Similarity=0.235  Sum_probs=152.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc-ceEEeeC--CchhhHH-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-PLLGLNP--RPPVYQA-   83 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~v~e~--~g~l~~~-   83 (379)
                      .++||+|+||.||+|++.  ++.||+++.......+.+.+|+.+++.++||||+++++++.+ .|+++||  +|+|.+. 
T Consensus        13 ~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l   90 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKWR--AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVL   90 (307)
T ss_dssp             EEEEECCSSSEEEEEEET--TEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHH
T ss_pred             eeEeecCCCceEEEEEEC--CeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHH
Confidence            458999999999999864  667775444444556779999999999999999999998766 8999999  6677665 


Q ss_pred             ----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccc
Q psy6046          84 ----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL  141 (379)
Q Consensus        84 ----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~  141 (379)
                                            .|+.|||+   .|.+||+||||||+||+++.+  ...+||+|||++......  ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~~~~ivH~dlkp~NIll~~~--~~~~kl~Dfg~~~~~~~~--~~~~  163 (307)
T 2eva_A           91 HGAEPLPYYTAAHAMSWCLQCSQGVAYLHS---MQPKALIHRDLKPPNLLLVAG--GTVLKICDFGTACDIQTH--MTNN  163 (307)
T ss_dssp             HCSSSEECCCHHHHHHHHHHHHHHHHHHHT---CSSSCCCCCCCSGGGEEEETT--TTEEEECCCCC-------------
T ss_pred             hccCCCCccCHHHHHHHHHHHHHHHHHHHh---CCCCCeecCCCChhHEEEeCC--CCEEEEcccccccccccc--cccC
Confidence                                  45666665   233789999999999999875  234899999999765332  3445


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC--hHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET--DSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      .||+.|+||               |+|+++|+|++|+.||....  .......+..+...   .....+++.+.++|.+|
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~  240 (307)
T 2eva_A          164 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRP---PLIKNLPKPIESLMTRC  240 (307)
T ss_dssp             -CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCC---CCBTTCCHHHHHHHHHH
T ss_pred             CCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCC---CcccccCHHHHHHHHHH
Confidence            799999999               99999999999999997543  33344444443322   23357899999999999


Q ss_pred             cccCCCCCCCHHHHhcC
Q psy6046         205 LIKNPMERMTAKEALKH  221 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~h  221 (379)
                      |..||.+|||+++++++
T Consensus       241 l~~dp~~Rps~~ell~~  257 (307)
T 2eva_A          241 WSKDPSQRPSMEEIVKI  257 (307)
T ss_dssp             TCSSGGGSCCHHHHHHH
T ss_pred             hcCChhhCcCHHHHHHH
Confidence            99999999999999873

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=7e-34  Score=266.25  Aligned_cols=200  Identities=16%  Similarity=0.143  Sum_probs=162.4

Q ss_pred             cCcCCCCceEEEEEEEc-----CCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEK-----TTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|.+.     .++..|| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  107 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVA-VKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY  107 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEE-EEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEE-EEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEee
Confidence            47999999999999984     3445566 5655432    23568899999999999999999998765   8999999


Q ss_pred             --CchhhHH--------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          77 --RPPVYQA--------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        77 --~g~l~~~--------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                        +|+|.+.                                            .|+.|||+      +||+||||||+||
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~ivH~dikp~NI  181 (314)
T 2ivs_A          108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE------MKLVHRDLAARNI  181 (314)
T ss_dssp             CTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGE
T ss_pred             cCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH------CCCcccccchheE
Confidence              4555322                                            56778887      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~  171 (379)
                      +++.+   +.+||+|||+++.......   .....+|+.|+||               |+|+++|+|++ |..||.+.+.
T Consensus       182 li~~~---~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  258 (314)
T 2ivs_A          182 LVAEG---RKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP  258 (314)
T ss_dssp             EEETT---TEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             EEcCC---CCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99975   8999999999987644321   2334577889999               99999999999 9999999888


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+....+..+....   ....+++++.++|.+||..||.+|||+.+++++
T Consensus       259 ~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          259 ERLFNLLKTGHRME---RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             GGHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHhhcCCcCC---CCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            88877777664322   224689999999999999999999999999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=3.1e-34  Score=269.87  Aligned_cols=200  Identities=16%  Similarity=0.180  Sum_probs=164.1

Q ss_pred             cCcCCCCceEEEEEEEc-----CCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEK-----TTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|.+.     .+++.|| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  109 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVA-IKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL  109 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEE-EEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEE-EEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEe
Confidence            48999999999999877     3456666 5555432    23458899999999999999999998765   7999999


Q ss_pred             --CchhhHH------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          77 --RPPVYQA------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        77 --~g~l~~~------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                        +|+|.+.                              .|+.|||+      +||+||||||+||+++.+   +.+||+
T Consensus       110 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dikp~NIli~~~---~~~kl~  180 (322)
T 1p4o_A          110 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA------NKFVHRDLAARNCMVAED---FTVKIG  180 (322)
T ss_dssp             CTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH------TTCBCSCCSGGGEEECTT---CCEEEC
T ss_pred             CCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH------CCCccCCCccceEEEcCC---CeEEEC
Confidence              5566543                              46777777      999999999999999975   899999


Q ss_pred             ecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCC
Q psy6046         125 DFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDF  185 (379)
Q Consensus       125 DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~  185 (379)
                      |||+++......   ......+|+.|+||               |+|+++|+|++ |..||.+.+..+....+..+....
T Consensus       181 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~  260 (322)
T 1p4o_A          181 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLD  260 (322)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCC
T ss_pred             cCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCC
Confidence            999997654332   12334678899999               99999999999 899999998888888887765432


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .   ...+++.+.+||.+||..||.+|||+.++++|
T Consensus       261 ~---~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          261 K---PDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             C---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             C---CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            2   23689999999999999999999999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=7.6e-34  Score=280.20  Aligned_cols=196  Identities=11%  Similarity=0.087  Sum_probs=160.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+.  |+.||++........+.+.+|+.+|+.++||||+++++++.    .+|++|||  +|+|.+
T Consensus       199 ~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~  276 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD  276 (450)
T ss_dssp             EEEEECSSEEEEEEEET--TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHH
T ss_pred             eeecCcCCeeEEEEEec--CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHH
Confidence            48999999999999864  66777444444445678999999999999999999999853    37999999  667765


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....  ...
T Consensus       277 ~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivHrDlkp~Nill~~~---~~~kl~DfG~a~~~~~~--~~~  345 (450)
T 1k9a_A          277 YLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG------NNFVHRDLAARNVLVSED---NVAKVSDFGLTKEASST--QDT  345 (450)
T ss_dssp             HHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT---SCEEECCCTTCEECC-------
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCCHhhEEECCC---CCEEEeeCCCccccccc--ccC
Confidence            5                      57888888      999999999999999875   89999999999864332  233


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+++.|+||               |+||++|+|++ |..||.+.+..+....+..+... +  ....+++.+.+||.+|
T Consensus       346 ~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~-~--~p~~~~~~l~~li~~c  422 (450)
T 1k9a_A          346 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM-D--APDGCPPAVYDVMKNC  422 (450)
T ss_dssp             -CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCC-C--CCTTCCHHHHHHHHHH
T ss_pred             CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-C--CCCcCCHHHHHHHHHH
Confidence            4678899999               99999999998 99999988887788887766322 1  2246899999999999


Q ss_pred             cccCCCCCCCHHHHhc
Q psy6046         205 LIKNPMERMTAKEALK  220 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~  220 (379)
                      |..||.+|||+.++++
T Consensus       423 l~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          423 WHLDAATRPTFLQLRE  438 (450)
T ss_dssp             TCSSGGGSCCHHHHHH
T ss_pred             cCCChhHCcCHHHHHH
Confidence            9999999999999976

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-33  Score=261.65  Aligned_cols=202  Identities=14%  Similarity=0.110  Sum_probs=165.1

Q ss_pred             cCcCCCCceEEEEEEEc--CCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEK--TTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~--~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      ..||+|+||.||+|.+.  .++..|| +|....    ...+.+.+|+.+++.++||||+++++++..  .|+++|+  +|
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~   94 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVA-IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGG   94 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEE-EEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             ccccccCceeEEEeEeccCCCcceEE-EEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCC
Confidence            38999999999999864  3555566 555543    234568999999999999999999998754  8999999  56


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++........
T Consensus        95 ~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~kl~Dfg~~~~~~~~~~  165 (287)
T 1u59_A           95 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE------KNFVHRDLAARNVLLVNR---HYAKISDFGLSKALGADDS  165 (287)
T ss_dssp             EHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEEET---TEEEECCCTTCEECTTCSC
T ss_pred             CHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHH------CCEeeCCCchheEEEcCC---CCEEECcccceeeeccCcc
Confidence            66654                     67888888      999999999999999986   8999999999987643322


Q ss_pred             ----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         138 ----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       138 ----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                          .....+|+.|+||               |+|+++|+|++ |..||.+.+..+....+..+....   ....+++++
T Consensus       166 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~---~~~~~~~~l  242 (287)
T 1u59_A          166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME---CPPECPPEL  242 (287)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCC---CCTTCCHHH
T ss_pred             eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCC---CCCCcCHHH
Confidence                2234568899999               99999999998 999999988888888887764322   224689999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                      .++|.+||..||.+|||+.++++|.+
T Consensus       243 ~~li~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          243 YALMSDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            99999999999999999999998654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=4.7e-34  Score=263.46  Aligned_cols=201  Identities=17%  Similarity=0.182  Sum_probs=164.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc-------------------
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------------------   69 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------------------   69 (379)
                      ++||+|+||.||+|.+..+|+.||+ |..... ...+.+|+.+++.++||||+++++++..                   
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vav-K~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVI-KRVKYN-NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKC   94 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEE-EEEECC-SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEE
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEE-EEeccc-cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcce
Confidence            4899999999999999999999885 444332 3567899999999999999999987643                   


Q ss_pred             ceEEeeC--CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          70 PLLGLNP--RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        70 ~~~v~e~--~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                      +|+++||  +|+|.+.                      .|+.|||+      +||+||||||+||+++.+   +.+||+|
T Consensus        95 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~D  165 (284)
T 2a19_B           95 LFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS------KKLINRDLKPSNIFLVDT---KQVKIGD  165 (284)
T ss_dssp             EEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEET---TEEEECC
T ss_pred             EEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeccCCHHHEEEcCC---CCEEECc
Confidence            6899999  5677654                      56788888      999999999999999985   8999999


Q ss_pred             cccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccc
Q psy6046         126 FEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELF  190 (379)
Q Consensus       126 FG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~  190 (379)
                      ||++.............||+.|+||               |+|+++|+|++|..||...  ......+..+..  +    
T Consensus       166 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~~~~~~~~~~~~--~----  237 (284)
T 2a19_B          166 FGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--SKFFTDLRDGII--S----  237 (284)
T ss_dssp             CTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--HHHHHHHHTTCC--C----
T ss_pred             chhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--HHHHHHhhcccc--c----
Confidence            9999887665555667899999999               9999999999999998532  233444444332  2    


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ..+++.+.+||.+||..||.+|||+.++++|++.-...
T Consensus       238 ~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          238 DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence            35789999999999999999999999999998875443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=7.4e-34  Score=264.17  Aligned_cols=200  Identities=15%  Similarity=0.106  Sum_probs=152.8

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      +.||+|+||.||+|+    +..+|+.||+++....  .....+.+|+.+++.++||||+++++++..     +|+++|| 
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   95 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL   95 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECC
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeC
Confidence            389999999999998    6678888885443332  223568899999999999999999998643     7999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....
T Consensus        96 ~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dikp~Nil~~~~---~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A           96 PYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT------KRYIHRDLATRNILVENE---NRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             TTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECCCCSCC----
T ss_pred             CCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhc------CCcccCCCCHhhEEEcCC---CeEEEccCcccccccC
Confidence             6677665                     67888888      999999999999999986   8999999999987644


Q ss_pred             Cc----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH----------------HHHHHHH
Q psy6046         135 GI----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS----------------ETFRNIS  179 (379)
Q Consensus       135 ~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~----------------~~~~~i~  179 (379)
                      ..    ......+++.|+||               |+|+++|+|++|..||......                .....+.
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (295)
T 3ugc_A          167 DKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLK  246 (295)
T ss_dssp             ---------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHH
T ss_pred             CcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHh
Confidence            32    12234577789999               9999999999999998653221                1222233


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+. ..+  ....+++++.+||.+||..||.+|||+.++++
T Consensus       247 ~~~-~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          247 NNG-RLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             TTC-CCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccC-cCC--CCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            222 111  22468999999999999999999999999986

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4e-34  Score=269.82  Aligned_cols=206  Identities=11%  Similarity=0.023  Sum_probs=155.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~--~   77 (379)
                      ++||+|+||.||+|++.  ++.|| +|......  .....+|+.+++.++||||+++++++.+       +|+++||  +
T Consensus        30 ~~lg~G~~g~Vy~~~~~--~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~  106 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLL--NEYVA-VKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK  106 (322)
T ss_dssp             EEEECSTTCEEEEEEET--TEEEE-EEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred             heecccCceEEEEEEEC--CCEEE-EEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCC
Confidence            48999999999999865  66677 56554433  3346678999999999999999998654       5999999  6


Q ss_pred             chhhHH-------------------HHHHHHhcc----cCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          78 PPVYQA-------------------SATTKAGSV----LFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        78 g~l~~~-------------------~al~~lh~~----~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      |+|.+.                   .|+.|||+.    ..+|+.||+||||||+|||++.+   +.+||+|||+++....
T Consensus       107 g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~---~~~kL~DFg~a~~~~~  183 (322)
T 3soc_A          107 GSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNN---LTACIADFGLALKFEA  183 (322)
T ss_dssp             CBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTT---CCEEECCCTTCEEECT
T ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCC---CeEEEccCCccccccc
Confidence            788766                   578888872    12333399999999999999875   8999999999987754


Q ss_pred             Ccc---ccccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCC----------------hHHHH
Q psy6046         135 GIE---IRELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGET----------------DSETF  175 (379)
Q Consensus       135 ~~~---~~~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~----------------~~~~~  175 (379)
                      ...   ....+||+.|+||                    |+||++|+|++|+.||.+..                ..+..
T Consensus       184 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  263 (322)
T 3soc_A          184 GKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQ  263 (322)
T ss_dssp             TSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHH
T ss_pred             ccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhh
Confidence            332   3346799999999                    99999999999999997542                22333


Q ss_pred             HHHHhCCCCC-Cccccc--CCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQLDF-PDELFE--DISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~~~~-~~~~~~--~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+....... ....+.  ..++++.+||.+||..||++|||+.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          264 EVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            3333322221 111111  23456999999999999999999999987

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=273.87  Aligned_cols=200  Identities=17%  Similarity=0.138  Sum_probs=163.8

Q ss_pred             cCcCCCCceEEEEEEEcCCC-------cEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEE
Q psy6046           9 HVGGNRARSSCSRKPEKTTK-------REVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg-------~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v   73 (379)
                      +.||+|+||.||+|++..++       ..|| +|.....    ....+.+|+++++.+ +||||+++++++.+   .|++
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv  153 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVA-VKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI  153 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEE-EEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEE
Confidence            47999999999999976543       3455 5655432    235688999999999 89999999998765   8999


Q ss_pred             eeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec
Q psy6046          74 LNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD  115 (379)
Q Consensus        74 ~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~  115 (379)
                      +||  +|+|.+.                                    .|+.|||+      +||+||||||+|||++.+
T Consensus       154 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~  227 (382)
T 3tt0_A          154 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS------KKCIHRDLAARNVLVTED  227 (382)
T ss_dssp             EECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT
T ss_pred             EEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh------CCEecCCCCcceEEEcCC
Confidence            999  5565432                                    57788888      999999999999999875


Q ss_pred             CCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHH
Q psy6046         116 FPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFR  176 (379)
Q Consensus       116 ~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~  176 (379)
                         +.+||+|||+++......   ......+|+.|+||               |+||++|+|++ |..||.+.+..+...
T Consensus       228 ---~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~  304 (382)
T 3tt0_A          228 ---NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFK  304 (382)
T ss_dssp             ---CCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHH
T ss_pred             ---CcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence               899999999998664332   23345678899999               99999999999 999999999888888


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+..+.....   ...+++++.+||.+||..||.+|||+.+++++
T Consensus       305 ~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          305 LLKEGHRMDK---PSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             HHHTTCCCCC---CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCCCCC---CccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            8877643322   23689999999999999999999999999984

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=6e-34  Score=262.94  Aligned_cols=201  Identities=14%  Similarity=0.099  Sum_probs=160.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCC---cEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTK---REVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg---~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      .++||+|+||.||+|.+..++   ..|| +|.....    ..+.+.+|+.+++.++||||+++++++.+  .|+++|+  
T Consensus        17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~   95 (281)
T 3cc6_A           17 NRILGEGFFGEVYEGVYTNHKGEKINVA-VKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYP   95 (281)
T ss_dssp             EEEEEECSSSEEEEEEEECTTCCEEEEE-EEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred             EEEEEecCCeeEEEeEEcCCCCCcceEE-EEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEEEecCC
Confidence            458999999999999876432   2355 6665442    34668999999999999999999998765  7899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus        96 ~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A           96 YGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES------INCVHRDIAVRNILVASP---ECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             TCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEEEET---TEEEECCCCGGGCC---
T ss_pred             CCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH------CCcccCCCccceEEECCC---CcEEeCccCCCcccccc
Confidence            5666554                     56788888      999999999999999986   89999999999866443


Q ss_pred             c--cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHH
Q psy6046         136 I--EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA  197 (379)
Q Consensus       136 ~--~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  197 (379)
                      .  ......+|+.|+||               |+|+++|+|++ |+.||...+..+....+..+.....   ...+++.+
T Consensus       167 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l  243 (281)
T 3cc6_A          167 DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPK---PDLCPPVL  243 (281)
T ss_dssp             ------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCC---CTTCCHHH
T ss_pred             cccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCC---CCCCCHHH
Confidence            2  12334578889999               99999999998 9999988777777777766543222   23589999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         198 KDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       198 ~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .++|.+||..||.+|||+.+++++
T Consensus       244 ~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          244 YTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHccCCchhCcCHHHHHHH
Confidence            999999999999999999999873

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1.2e-33  Score=265.22  Aligned_cols=206  Identities=17%  Similarity=0.232  Sum_probs=157.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCC--CCCcceeeeecCc---ceEEeeC-C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIK--VEPIEKYYSLDPE---PLLGLNP-R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~--hpnIv~~~~~~~~---~~~v~e~-~   77 (379)
                      ..||+|+||.||+|.+. +|+.|| +|....     .....+.+|+.+++.++  ||||+++++++.+   .|+++|+ +
T Consensus        34 ~~lg~G~~g~Vy~~~~~-~~~~va-vK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~~  111 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNE-KKQIYA-IKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGN  111 (313)
T ss_dssp             EEEECCSSEEEEEEECT-TCCEEE-EEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             EEecCCCCEEEEEEEcC-CCcEEE-EEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEecCC
Confidence            48999999999999985 477777 454432     22356899999999998  5999999998654   7899999 6


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      |+|.+.                    .|+.|||+      +||+||||||+||++++    +.+||+|||+++...... 
T Consensus       112 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~NIl~~~----~~~kL~Dfg~~~~~~~~~~  181 (313)
T 3cek_A          112 IDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ------HGIVHSDLKPANFLIVD----GMLKLIDFGIANQMQPDTT  181 (313)
T ss_dssp             EEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEEET----TEEEECCCSSSCC------
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCceecCCCcccEEEEC----CeEEEeeccccccccCccc
Confidence            666655                    67888888      99999999999999964    799999999998764332 


Q ss_pred             --cccccccCCCCcch--------------------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHhCCCCCCc
Q psy6046         137 --EIRELLGTPDYVGK--------------------------SLGVTAYVLLTGFSPFGGETD-SETFRNISKAQLDFPD  187 (379)
Q Consensus       137 --~~~~~~gt~~y~aP--------------------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~~~~~~~~  187 (379)
                        .....+||+.|+||                          |+|+++|+|++|..||..... ......+.......+ 
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-  260 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIE-  260 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCC-
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccC-
Confidence              22345789999997                          899999999999999976543 334444444332221 


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                       .....++++.+||.+||..||.+|||+.++++||||+...
T Consensus       261 -~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  300 (313)
T 3cek_A          261 -FPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  300 (313)
T ss_dssp             -CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC-
T ss_pred             -CcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCC
Confidence             2235689999999999999999999999999999998654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3e-34  Score=274.07  Aligned_cols=201  Identities=17%  Similarity=0.169  Sum_probs=157.8

Q ss_pred             ccCcCCCCceEEEEEE-----EcCCCcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc----ceEE
Q psy6046           8 SHVGGNRARSSCSRKP-----EKTTKREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~-----~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~v   73 (379)
                      .+.||+|+||.||+|+     +..+++.|| +|.....    ....+.+|+.+++.+ +||||+++++++.+    +|++
T Consensus        27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv  105 (359)
T 3vhe_A           27 GKPLGRGAFGQVIEADAFGIDKTATCRTVA-VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  105 (359)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             ceeecCCCCceEEEEEeccccccccceEEE-EEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEE
Confidence            3489999999999999     555667777 4554432    234689999999999 78999999998654    7999


Q ss_pred             eeC--CchhhHH--------------------------------------------------------------------
Q psy6046          74 LNP--RPPVYQA--------------------------------------------------------------------   83 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------------------------------------------------------   83 (379)
                      +||  +|+|.+.                                                                    
T Consensus       106 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (359)
T 3vhe_A          106 VEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDL  185 (359)
T ss_dssp             EECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------------CT
T ss_pred             EEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccch
Confidence            999  5555321                                                                    


Q ss_pred             ------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---cccccc
Q psy6046          84 ------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---EIRELL  142 (379)
Q Consensus        84 ------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---~~~~~~  142 (379)
                                        .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......   ......
T Consensus       186 ~~~~l~~~~~~~~~~ql~~aL~~LH~------~~ivH~Dikp~NIll~~~---~~~kl~Dfg~a~~~~~~~~~~~~~~~~  256 (359)
T 3vhe_A          186 YKDFLTLEHLICYSFQVAKGMEFLAS------RKCIHRDLAARNILLSEK---NVVKICDFGLARDIYKDPDYVRKGDAR  256 (359)
T ss_dssp             TTTCBCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GCEEECCCGGGSCTTSCTTCEEC--CE
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHH------CCcccCCCChhhEEEcCC---CcEEEEeccceeeecccccchhccccC
Confidence                              56788888      999999999999999976   899999999998654332   234467


Q ss_pred             cCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHHHHHHhc
Q psy6046         143 GTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKDFIAKIL  205 (379)
Q Consensus       143 gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  205 (379)
                      ||+.|+||               |+||++|+|++ |..||.+.... .....+..+....   ....+++++.++|.+||
T Consensus       257 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l  333 (359)
T 3vhe_A          257 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR---APDYTTPEMYQTMLDCW  333 (359)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCC---CCTTCCHHHHHHHHHHT
T ss_pred             CCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHc
Confidence            89999999               99999999998 99999887644 3444444443221   12358999999999999


Q ss_pred             ccCCCCCCCHHHHhcC
Q psy6046         206 IKNPMERMTAKEALKH  221 (379)
Q Consensus       206 ~~dP~~Rpt~~e~l~h  221 (379)
                      ..||.+|||+.++++|
T Consensus       334 ~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          334 HGEPSQRPTFSELVEH  349 (359)
T ss_dssp             CSSGGGSCCHHHHHHH
T ss_pred             cCChhhCCCHHHHHHH
Confidence            9999999999999985

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5.9e-34  Score=268.95  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=161.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEE-EEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREV-VQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~-a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++..+|..+ +++|....    .....+.+|+.+++.+ +||||+++++++.+   .|++|||  
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~  109 (327)
T 1fvr_A           30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP  109 (327)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             eeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCC
Confidence            348999999999999999999865 23444332    3346689999999999 89999999998765   8999999  


Q ss_pred             CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCc
Q psy6046          77 RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCD  120 (379)
Q Consensus        77 ~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~  120 (379)
                      +|+|.+.                                    .|+.|||+      +||+||||||+||+++.+   +.
T Consensus       110 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dlkp~NIl~~~~---~~  180 (327)
T 1fvr_A          110 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ------KQFIHRDLAARNILVGEN---YV  180 (327)
T ss_dssp             TCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECGG---GC
T ss_pred             CCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCccceEEEcCC---Ce
Confidence            5555442                                    56788888      999999999999999876   79


Q ss_pred             EEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         121 IKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       121 ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +||+|||+++............+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+...
T Consensus       181 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~  260 (327)
T 1fvr_A          181 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL  260 (327)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCC
T ss_pred             EEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCC
Confidence            999999999754333233445678899999               99999999998 99999999988888887765322


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .   ....+++++.+||.+||..||.+|||+++++++
T Consensus       261 ~---~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          261 E---KPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             C---CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             C---CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            1   123689999999999999999999999999985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.6e-33  Score=260.15  Aligned_cols=198  Identities=14%  Similarity=0.095  Sum_probs=161.2

Q ss_pred             CcCCCCceEEEEEEE--cCCCcEEEEEEecccc-----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPE--KTTKREVVQWKERNVS-----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~--~~tg~~~a~~k~~~~~-----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      .||+|+||.||+|.+  ..+++.|| +|.....     ..+.+.+|+.+++.++||||+++++++..  .|+++|+  +|
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~  102 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVA-VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  102 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEE-EEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             ccccccCeeeEeeeecCCCceeeEE-EEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEEEEeCCCC
Confidence            899999999999954  55666677 4554332     14568999999999999999999998754  7899999  56


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      +|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++........ 
T Consensus       103 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~i~H~dikp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~  173 (291)
T 1xbb_A          103 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE------SNFVHRDLAARNVLLVTQ---HYAKISDFGLSKALRADENY  173 (291)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEET---TEEEECCCTTCEECCTTCSE
T ss_pred             CHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHh------CCeEcCCCCcceEEEeCC---CcEEEccCCcceeeccCCCc
Confidence            77665                    67888888      999999999999999986   8999999999987654322 


Q ss_pred             ---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 ---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 ---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                         .....+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+....   ....+++.+.
T Consensus       174 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~  250 (291)
T 1xbb_A          174 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG---CPAGCPREMY  250 (291)
T ss_dssp             EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC---CCTTCCHHHH
T ss_pred             ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC---CCCCCCHHHH
Confidence               1223467889999               99999999999 999999998888888877764322   2246899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++|.+||..||.+|||+.++++
T Consensus       251 ~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          251 DLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHcCCChhhCcCHHHHHH
Confidence            9999999999999999999987

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3.8e-34  Score=265.66  Aligned_cols=207  Identities=15%  Similarity=0.124  Sum_probs=160.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC-CchhhH
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP-RPPVYQ   82 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~-~g~l~~   82 (379)
                      .+.||+|+||.||+|++..+|+.||++..........+.+|+.+++.++|++++..+..+.    ..++++|+ +|+|.+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~L~~   93 (296)
T 4hgt_A           14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLED   93 (296)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCCCBHHH
T ss_pred             eeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEccCCCHHH
Confidence            3589999999999999999999888544344444567899999999999999877666542    27899999 777665


Q ss_pred             H---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc----
Q psy6046          83 A---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE----  137 (379)
Q Consensus        83 ~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~----  137 (379)
                      .                     .|+.|||+      +||+||||||+||+++..+.++.+||+|||+++.......    
T Consensus        94 ~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~  167 (296)
T 4hgt_A           94 LFNFCSRKFSLKTVLLLADQMISRIEYIHS------KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHI  167 (296)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccC
Confidence            5                     67888888      9999999999999994322248899999999987654322    


Q ss_pred             ----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh---HHHHHHHHhCCCCCC-cccccCCC
Q psy6046         138 ----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD---SETFRNISKAQLDFP-DELFEDIS  194 (379)
Q Consensus       138 ----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~---~~~~~~i~~~~~~~~-~~~~~~~s  194 (379)
                          .....||+.|+||               |+||++|+|++|+.||.+.+.   ...+..+.......+ ......+|
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (296)
T 4hgt_A          168 PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYP  247 (296)
T ss_dssp             CCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSC
T ss_pred             CCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCC
Confidence                2356799999999               999999999999999976432   223333333322223 22334689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +++.+||.+||..||++|||++++++
T Consensus       248 ~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          248 SEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence            99999999999999999999999987

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=9.6e-34  Score=279.77  Aligned_cols=198  Identities=16%  Similarity=0.170  Sum_probs=163.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+.. +..|| +|....  ...+.+.+|+.+|+.++||||+++++++.+  .|++|||  +|+|.+
T Consensus       194 ~~lG~G~fg~V~~~~~~~-~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g~L~~  271 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNK-HTKVA-VKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLD  271 (454)
T ss_dssp             EEEECCSSEEEEEEEETT-TEEEE-EEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTCBHHH
T ss_pred             EEcccCCceEEEEEEECC-ccEEE-EEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCCcHHH
Confidence            389999999999999764 55666 454443  345679999999999999999999998765  8999999  677776


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......  ..
T Consensus       272 ~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~------~~ivHrDlkp~Nill~~~---~~~kl~DFG~a~~~~~~~~~~~  342 (454)
T 1qcf_A          272 FLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ------RNYIHRDLRAANILVSAS---LVCKIADFGLARVIEDNEYTAR  342 (454)
T ss_dssp             HHHSHHHHTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSSCSGGGEEECTT---CCEEECSTTGGGGBCCHHHHTT
T ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCCHHHEEECCC---CcEEEeeCCCceEcCCCceecc
Confidence            5                      56888888      999999999999999975   899999999998754322  12


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+|+.|+||               |+||++|+|++ |+.||.+.+..+....+..+... +.  ...+++++.+||.
T Consensus       343 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~-~~--~~~~~~~l~~li~  419 (454)
T 1qcf_A          343 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRM-PR--PENCPEELYNIMM  419 (454)
T ss_dssp             CSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCC-CC--CTTSCHHHHHHHH
T ss_pred             CCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-CC--CCCCCHHHHHHHH
Confidence            234467789999               99999999999 99999999988888888776422 21  2468999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..||.+|||+++++.
T Consensus       420 ~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          420 RCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHccCChhHCcCHHHHHH
Confidence            999999999999999986

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=9.2e-34  Score=268.86  Aligned_cols=199  Identities=15%  Similarity=0.096  Sum_probs=163.0

Q ss_pred             cCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|++..     +++.|| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++||
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  131 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVA-VKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEY  131 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEE-EEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEE-EEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEec
Confidence            479999999999999874     445666 5655432    23568999999999999999999998764   8999999


Q ss_pred             --CchhhHH--------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          77 --RPPVYQA--------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        77 --~g~l~~~--------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                        +|+|.+.                                            .|+.|||+      +||+||||||+||
T Consensus       132 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~------~~ivH~Dlkp~NI  205 (343)
T 1luf_A          132 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE------RKFVHRDLATRNC  205 (343)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGE
T ss_pred             CCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeecCCCCcceE
Confidence              5565442                                            56777787      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~  171 (379)
                      +++.+   +.+||+|||+++......   ......+|+.|+||               |+|+++|+|++ |..||.+.+.
T Consensus       206 l~~~~---~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  282 (343)
T 1luf_A          206 LVGEN---MVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH  282 (343)
T ss_dssp             EECGG---GCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             EECCC---CeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence            99986   899999999997654332   22345688899999               99999999999 9999999998


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+....+..+.....+   ..+++++.+||.+||..||.+|||+.++++
T Consensus       283 ~~~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rps~~~~~~  328 (343)
T 1luf_A          283 EEVIYYVRDGNILACP---ENCPLELYNLMRLCWSKLPADRPSFCSIHR  328 (343)
T ss_dssp             HHHHHHHHTTCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHhCCCcCCCC---CCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            8888888877643222   368999999999999999999999999987

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=5.7e-34  Score=274.41  Aligned_cols=199  Identities=15%  Similarity=0.158  Sum_probs=151.5

Q ss_pred             cCcCCCCceEEEEEEEc---CCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEK---TTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~---~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++||+|+||.||+|++.   .++..|| +|....    .....+.+|+.+|+.++||||+++++++.+   .|++|||  
T Consensus        51 ~~lG~G~fg~Vy~~~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  129 (373)
T 2qol_A           51 KVVGAGEFGEVCSGRLKLPSKKEISVA-IKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYME  129 (373)
T ss_dssp             EEEEECSSSEEEEC-CBCTTSCBCCEE-EEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eEEeeCCCeEEEEEEEecCCCCceeEE-EEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCC
Confidence            48999999999999987   3455677 555443    234568999999999999999999999765   7999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....
T Consensus       130 ~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~  200 (373)
T 2qol_A          130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD------MGYVHRDLAARNILINSN---LVCKVSDFGLGRVLEDD  200 (373)
T ss_dssp             TCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCC---------
T ss_pred             CCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeCCCCCcceEEEcCC---CCEEECcCccccccccC
Confidence            6677665                     67888888      999999999999999875   89999999999876543


Q ss_pred             cc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..    .....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+....+   ...++.
T Consensus       201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~---~~~~~~  277 (373)
T 2qol_A          201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP---PMDCPA  277 (373)
T ss_dssp             -------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCC---CTTCBH
T ss_pred             CccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---CccccH
Confidence            21    1123357789999               99999999998 9999999988888887776532211   236889


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.++|.+||..||.+|||+.++++
T Consensus       278 ~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          278 ALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHhCcChhhCcCHHHHHH
Confidence            9999999999999999999999987

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=4.3e-34  Score=269.18  Aligned_cols=205  Identities=15%  Similarity=0.088  Sum_probs=155.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      ..+||+|+||.||+|++. +|+.||+++....  ...+.+.+|+.+++.++||||+++++++.+   .|+++||  +|+|
T Consensus        44 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  122 (321)
T 2qkw_B           44 KFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNL  122 (321)
T ss_dssp             CCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBT
T ss_pred             cceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcH
Confidence            348999999999999964 6777775433322  234678999999999999999999999765   8999999  5565


Q ss_pred             hHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          81 YQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        81 ~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      .+.                        .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++......
T Consensus       123 ~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~ivH~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~  193 (321)
T 2qkw_B          123 KRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT------RAIIHRDVKSINILLDEN---FVPKITDFGISKKGTELD  193 (321)
T ss_dssp             GGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCSTTEEECTT---CCEEECCCTTCEECSSSS
T ss_pred             HHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC------CCeecCCCCHHHEEECCC---CCEEEeeccccccccccc
Confidence            443                        57888888      999999999999999875   899999999998754322


Q ss_pred             ---cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHH-------HHHHhCCCC------C
Q psy6046         137 ---EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETF-------RNISKAQLD------F  185 (379)
Q Consensus       137 ---~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~-------~~i~~~~~~------~  185 (379)
                         ......||+.|+||               |+||++|+|++|+.||.+..+.+..       .....+...      .
T Consensus       194 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T 2qkw_B          194 QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNL  273 (321)
T ss_dssp             CCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSC
T ss_pred             ccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhh
Confidence               23345689999999               9999999999999999765432111       111111111      1


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      .....+..+..+.+++.+||..||++|||+.+++++.
T Consensus       274 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          274 ADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            1111223467789999999999999999999999864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.7e-33  Score=257.52  Aligned_cols=200  Identities=16%  Similarity=0.136  Sum_probs=164.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||.||+|.+. +++.|| +|.....  ..+.+.+|+.+++.++||||+++++++.+   .|+++|+  +|+|
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~~va-iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (267)
T 3t9t_A           13 VQEIGSGQFGLVHLGYWL-NKDKVA-IKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCL   90 (267)
T ss_dssp             EEEEEEETTEEEEEEEET-TTEEEE-EEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBH
T ss_pred             eeEecCCCceeEEEEEec-CCCeEE-EEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcH
Confidence            348999999999999986 555666 4554432  34679999999999999999999998765   7999999  5666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--c
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--E  137 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~  137 (379)
                      .+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.......  .
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dl~p~Nili~~~---~~~kl~dfg~~~~~~~~~~~~  161 (267)
T 3t9t_A           91 SDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE------ACVIHRDLAARNCLVGEN---QVIKVSDFGMTRFVLDDQYTS  161 (267)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSSCCGGGEEECGG---GCEEECCTTGGGGBCCHHHHS
T ss_pred             HHHHhhCcccCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCchheEEECCC---CCEEEcccccccccccccccc
Confidence            655                     56788888      999999999999999876   889999999997653322  2


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....+++.|+||               |+|+++|+|++ |.+||.+.+..+....+..+.....+   ..+++.+.+++
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~---~~~~~~l~~li  238 (267)
T 3t9t_A          162 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP---RLASTHVYQIM  238 (267)
T ss_dssp             TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCC---TTSCHHHHHHH
T ss_pred             cccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCC---ccCcHHHHHHH
Confidence            2345577889999               99999999999 99999999888888888776433322   35799999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy6046         202 AKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+||..||.+|||+.+++++
T Consensus       239 ~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          239 NHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHccCChhhCcCHHHHHHH
Confidence            99999999999999999873

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.5e-33  Score=262.36  Aligned_cols=207  Identities=15%  Similarity=0.159  Sum_probs=156.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHh--CCCCCcceeeeecCc-------ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKL--IKVEPIEKYYSLDPE-------PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~--l~hpnIv~~~~~~~~-------~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++  +|+.|| +|...........+|.+++..  ++||||+++++++.+       +|+++||  
T Consensus        13 ~~~lg~G~~g~V~~~~~--~~~~va-vK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~   89 (301)
T 3q4u_A           13 LECVGKGRYGEVWRGSW--QGENVA-VKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHE   89 (301)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEE-EEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCT
T ss_pred             EEeeccCCCcEEEEEEE--CCEEEE-EEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhcc
Confidence            45899999999999986  677777 676666666777888888887  889999999987432       7899999  


Q ss_pred             CchhhHH-------------------HHHHHHhcccC--CCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA-------------------SATTKAGSVLF--PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~~~--~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                   .|+.|||....  .+++||+||||||+|||++.+   +.+||+|||+++.....
T Consensus        90 ~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~---~~~kl~Dfg~a~~~~~~  166 (301)
T 3q4u_A           90 MGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKN---GQCCIADLGLAVMHSQS  166 (301)
T ss_dssp             TCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTT---SCEEECCCTTCEEEETT
T ss_pred             CCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCC---CCEEEeeCCCeeecccc
Confidence            6788776                   67888881000  012999999999999999975   89999999999876543


Q ss_pred             cc-----ccccccCCCCcch---------------------HHHHHHHHHhhC----------CCCCCCCC----hHHHH
Q psy6046         136 IE-----IRELLGTPDYVGK---------------------SLGVTAYVLLTG----------FSPFGGET----DSETF  175 (379)
Q Consensus       136 ~~-----~~~~~gt~~y~aP---------------------SlGvil~~lltg----------~~Pf~~~~----~~~~~  175 (379)
                      ..     ....+||+.|+||                     |+||++|+|++|          ..||....    .....
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~  246 (301)
T 3q4u_A          167 TNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDM  246 (301)
T ss_dssp             TTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             cccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhh
Confidence            32     2335799999999                     999999999999          88986432    22333


Q ss_pred             HHHHhCC---CCCCcc-cccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQ---LDFPDE-LFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~---~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .......   ...+.. ....+++.+.+||.+||..||.+|||+.++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          247 RKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             HHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             hHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence            3332221   112211 11235678999999999999999999999986

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-33  Score=267.71  Aligned_cols=202  Identities=13%  Similarity=0.115  Sum_probs=159.7

Q ss_pred             cCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEK-----TTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      +.||+|+||.||+|.+.     .++..|| +|....    ...+.+.+|+.+++.+ +||||+++++++.+   .|++||
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e  129 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVA-VKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFE  129 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEE-EEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEE-EEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEe
Confidence            48999999999999973     3444566 555433    3356799999999999 89999999998764   899999


Q ss_pred             C--CchhhHH-------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          76 P--RPPVYQA-------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        76 ~--~g~l~~~-------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                      |  +|+|.+.                                           .|+.|||+      +||+||||||+||
T Consensus       130 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NI  203 (344)
T 1rjb_A          130 YCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF------KSCVHRDLAARNV  203 (344)
T ss_dssp             CCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH------TTEEETTCSGGGE
T ss_pred             cCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCChhhE
Confidence            9  5555432                                           56788888      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~  171 (379)
                      +++.+   +.+||+|||++........   .....||+.|+||               |+|+++|+|++ |..||.+.+.
T Consensus       204 ll~~~---~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  280 (344)
T 1rjb_A          204 LVTHG---KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV  280 (344)
T ss_dssp             EEETT---TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             EEcCC---CcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence            99975   8999999999987644322   2345678899999               99999999998 9999988765


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      ......+.......+.  ...+++++.+||.+||..||.+|||+.++++|.
T Consensus       281 ~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          281 DANFYKLIQNGFKMDQ--PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             SHHHHHHHHTTCCCCC--CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCC--CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            5555444444333222  236899999999999999999999999999854

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=7e-34  Score=263.28  Aligned_cols=200  Identities=14%  Similarity=0.121  Sum_probs=156.7

Q ss_pred             CccCcCCCCceEEEEEEEcCCCc-------EEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKR-------EVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~-------~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v   73 (379)
                      ..+.||+|+||.||+|++..+++       .|| +|....   ...+.+.+|+.+++.++||||+++++++.+   .|++
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va-~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   90 (289)
T 4fvq_A           12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVL-LKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILV   90 (289)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECGGGCEEEEEEE-EEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEE
T ss_pred             eeeeeccCCCceEEEEEEecccccccccchhhh-hhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEE
Confidence            34589999999999999998884       355 565433   334678999999999999999999999764   7999


Q ss_pred             eeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-----CCcEEEee
Q psy6046          74 LNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-----NCDIKVCD  125 (379)
Q Consensus        74 ~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-----~~~ikl~D  125 (379)
                      +||  +|+|.+.                     .|+.|||+      +||+||||||+|||++.++.     .+.+||+|
T Consensus        91 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~D  164 (289)
T 4fvq_A           91 QEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEE------NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSD  164 (289)
T ss_dssp             EECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECC
T ss_pred             EECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhh------CCeECCCcCcceEEEecCCcccccccceeeecc
Confidence            999  6777665                     57888888      99999999999999998621     01299999


Q ss_pred             cccceeeccCccccccccCCCCcch----------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCCCCcc
Q psy6046         126 FEISRVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLDFPDE  188 (379)
Q Consensus       126 FG~a~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~~~~~  188 (379)
                      ||++.....   .....||+.|+||                |+|+++|+|++| .+||........... .......+. 
T Consensus       165 fg~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-  239 (289)
T 4fvq_A          165 PGISITVLP---KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQF-YEDRHQLPA-  239 (289)
T ss_dssp             CCSCTTTSC---HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH-HHTTCCCCC-
T ss_pred             CcccccccC---ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHH-hhccCCCCC-
Confidence            999865422   2345688999999                999999999995 555555555444433 333344443 


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                         ..++++.+||.+||..||.+|||+.++++|
T Consensus       240 ---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          240 ---PKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             ---CSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence               467889999999999999999999999984

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=7e-33  Score=255.36  Aligned_cols=198  Identities=15%  Similarity=0.145  Sum_probs=163.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+. ++..|| +|....  ...+.+.+|+.+++.++||||+++++++.+  .|+++|+  +|+|.+
T Consensus        19 ~~lg~G~~g~Vy~~~~~-~~~~va-vK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~   96 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYYN-GHTKVA-VKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVD   96 (279)
T ss_dssp             EEEEEETTEEEEEEEET-TTEEEE-EEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHH
T ss_pred             eeecCCCCeEEEEEEEc-CCcEEE-EEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCCCHHH
Confidence            48999999999999965 455666 554443  235678999999999999999999998764  8999999  667765


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--c
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--I  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--~  138 (379)
                      .                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||++........  .
T Consensus        97 ~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~~~  167 (279)
T 1qpc_A           97 FLKTPSGIKLTINKLLDMAAQIAEGMAFIEE------RNYIHRDLRAANILVSDT---LSCKIADFGLARLIEDNEYTAR  167 (279)
T ss_dssp             HTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---SCEEECCCTTCEECSSSCEECC
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeccCCCHhhEEEcCC---CCEEECCCcccccccCcccccc
Confidence            5                      56788888      999999999999999875   8999999999987654332  2


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+.....   ...+++++.++|.
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~  244 (279)
T 1qpc_A          168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVR---PDNCPEELYQLMR  244 (279)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHH
T ss_pred             cCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCC---cccccHHHHHHHH
Confidence            334567889999               99999999999 9999999888888888876643222   2468999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..||.+|||+.++++
T Consensus       245 ~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          245 LCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHhccChhhCCCHHHHHH
Confidence            999999999999999987

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.9e-33  Score=261.69  Aligned_cols=200  Identities=15%  Similarity=0.111  Sum_probs=157.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE--EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE--VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~--~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~--   76 (379)
                      ++||+|+||.||+|.+..++..  .+++|....    ...+.+.+|+.+++.++||||+++++++.    ..|+++||  
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~  110 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  110 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCT
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCC
Confidence            5899999999999997654432  233555443    22356889999999999999999999743    27899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++.....
T Consensus       111 ~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          111 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS------KKFVHRDLAARNCMLDEK---FTVKVADFGLARDMYDK  181 (298)
T ss_dssp             TCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---CCEEECSCGGGCCCSCG
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCchheEEECCC---CCEEECccccccccccc
Confidence            6677665                     56788888      999999999999999875   89999999999876433


Q ss_pred             c-----cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         136 I-----EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       136 ~-----~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .     ......+|+.|+||               |+|+++|+|++ |.+||.+.+..+....+..+.....+   ..++
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  258 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP---EYCP  258 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCC---TTCC
T ss_pred             chhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCC---ccCC
Confidence            2     12345678899999               99999999999 77888887777777777766544433   3579


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+.++|.+||..||.+|||+.++++
T Consensus       259 ~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          259 DPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999999987

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.4e-33  Score=266.80  Aligned_cols=200  Identities=13%  Similarity=0.142  Sum_probs=160.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCc-----EEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR-----EVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~-----~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      +.||+|+||.||+|.+..+++     .|| +|.....    ..+.+.+|+.+++.+ +||||+++++++.+   +|+++|
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e  130 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVA-VKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE  130 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHH-HHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEe
Confidence            479999999999999988775     455 5555432    345689999999999 89999999998765   899999


Q ss_pred             C--CchhhHH----------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          76 P--RPPVYQA----------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        76 ~--~g~l~~~----------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      |  +|+|.+.                                  .|+.|||+      +||+||||||+||+++.+   +
T Consensus       131 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~ivH~Dlkp~NIl~~~~---~  201 (333)
T 2i1m_A          131 YCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS------KNCIHRDVAARNVLLTNG---H  201 (333)
T ss_dssp             CCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGCEEEGG---G
T ss_pred             cCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc------CCcccCCcccceEEECCC---C
Confidence            9  5666543                                  56777887      999999999999999986   8


Q ss_pred             cEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHh
Q psy6046         120 DIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISK  180 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~  180 (379)
                      .+||+|||++........   .....||+.|+||               |+|+++|+|++ |..||.+.........+..
T Consensus       202 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~  281 (333)
T 2i1m_A          202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVK  281 (333)
T ss_dssp             EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHH
T ss_pred             eEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHh
Confidence            999999999986643322   2345678899999               99999999998 9999988765554444444


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .....+.  ...+++.+.++|.+||..||.+|||+.++++
T Consensus       282 ~~~~~~~--~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  319 (333)
T 2i1m_A          282 DGYQMAQ--PAFAPKNIYSIMQACWALEPTHRPTFQQICS  319 (333)
T ss_dssp             HTCCCCC--CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCC--CCCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            3332221  2357899999999999999999999999987

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.9e-33  Score=260.14  Aligned_cols=199  Identities=17%  Similarity=0.123  Sum_probs=160.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCc---EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR---EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~-   76 (379)
                      ++||+|+||.||+|.+..++.   .+| +|....    ...+.+.+|+.+++.++||||+++++++.+    .++++|+ 
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~a-iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~  105 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCA-IKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYM  105 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEE-EEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCC
T ss_pred             ceeccCCCceEEEEEEecCCCceeeee-eeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecc
Confidence            579999999999999876654   455 555443    223568899999999999999999998754    4899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....
T Consensus       106 ~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~i~H~dikp~Nili~~~---~~~kl~Dfg~~~~~~~  176 (298)
T 3pls_A          106 CHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAE------QKFVHRDLAARNCMLDES---FTVKVADFGLARDILD  176 (298)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---CCEEECCTTSSCTTTT
T ss_pred             cCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCcceEEEcCC---CcEEeCcCCCcccccC
Confidence             6777665                     67888888      999999999999999875   8999999999976533


Q ss_pred             Cc-----cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         135 GI-----EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       135 ~~-----~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ..     ......+|+.|+||               |+|+++|+|++ |.+||.+.+..+....+..+.....   ...+
T Consensus       177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  253 (298)
T 3pls_A          177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQ---PEYC  253 (298)
T ss_dssp             GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCC---CTTC
T ss_pred             CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCC---Cccc
Confidence            22     23345678899999               99999999999 5666777777777777766553222   2368


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.+.+||.+||..||.+|||+.++++
T Consensus       254 ~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          254 PDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999999999987

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.8e-33  Score=263.78  Aligned_cols=202  Identities=18%  Similarity=0.184  Sum_probs=157.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++..+++.|| +|.....      ....+.+|+.+++.++||||+++++++.+   .|+++|+  
T Consensus        39 ~~~lg~G~~g~Vy~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  117 (309)
T 2h34_A           39 RRLVGRGGMGDVYEAEDTVRERIVA-LKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLIN  117 (309)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEE-EEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEcCCCCeeEEEEEEcCCCeEEE-EEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecC
Confidence            4589999999999999999998888 5554332      12568899999999999999999998654   7999999  


Q ss_pred             CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 ~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      +|+|.+.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.......
T Consensus       118 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~i~H~dlkp~NIl~~~~---~~~kl~Dfg~~~~~~~~~  188 (309)
T 2h34_A          118 GVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHA------AGATHRDVKPENILVSAD---DFAYLVDFGIASATTDEK  188 (309)
T ss_dssp             CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECSCCC--------
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------CcCCcCCCChHHEEEcCC---CCEEEecCccCccccccc
Confidence            5677665                    67888888      999999999999999875   899999999997764432


Q ss_pred             --cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         137 --EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       137 --~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                        ......||+.|+||               |+|+++|+|++|+.||.+.+.......+ ......+....+.+|+++.+
T Consensus       189 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  267 (309)
T 2h34_A          189 LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHI-NQAIPRPSTVRPGIPVAFDA  267 (309)
T ss_dssp             --------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHH-HSCCCCGGGTSTTCCTHHHH
T ss_pred             cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHh-ccCCCCccccCCCCCHHHHH
Confidence              23456799999999               9999999999999999887665444444 34444444555679999999


Q ss_pred             HHHHhcccCCCCCC-CHHHHhc
Q psy6046         200 FIAKILIKNPMERM-TAKEALK  220 (379)
Q Consensus       200 li~~~L~~dP~~Rp-t~~e~l~  220 (379)
                      +|.+||..||.+|| |++++++
T Consensus       268 li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          268 VIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             HHHHHTCSSGGGSCSSHHHHHH
T ss_pred             HHHHhccCCHHHHHHhHHHHHH
Confidence            99999999999999 8888776

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=2.7e-34  Score=292.60  Aligned_cols=215  Identities=18%  Similarity=0.168  Sum_probs=167.4

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v   73 (379)
                      ..+.||+|+||.||+|.+..+|+.|| +|....    ...+.+.+|+.+++.++||||+++++++..         .|++
T Consensus        18 i~~~LG~G~fG~Vyla~~~~tg~~VA-VKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LV   96 (676)
T 3qa8_A           18 MKERLGTGGFGYVLRWIHQDTGEQVA-IKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLA   96 (676)
T ss_dssp             CCCCCCBCSSSBCCCCCCTTTTCCEE-ECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCcEEE-EEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEE
Confidence            44599999999999999999999988 454432    234568899999999999999999998532         6899


Q ss_pred             eeC--CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          74 LNP--RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        74 ~e~--~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      +||  +|+|.+.                       .|+.|||+      .||+||||||+||+++.++....+||+|||+
T Consensus        97 mEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs------~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~  170 (676)
T 3qa8_A           97 MEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE------NRIIHRDLKPENIVLQPGPQRLIHKIIDLGY  170 (676)
T ss_dssp             EECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH------TTBCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred             EEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH------CCCccCCCCHHHeEeecCCCceeEEEccccc
Confidence            999  6677654                       67888888      9999999999999999764445699999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHH--------------HH
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRN--------------IS  179 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~--------------i~  179 (379)
                      +............+||+.|+||               |+||++|+|++|..||.+......+..              ..
T Consensus       171 a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l  250 (676)
T 3qa8_A          171 AKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDL  250 (676)
T ss_dssp             CCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCC
T ss_pred             ccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhh
Confidence            9887666556677899999999               999999999999999976533221100              01


Q ss_pred             hCCC------CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         180 KAQL------DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       180 ~~~~------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .+..      +.|......+++.+.+||.+||..||.+|||+.++++||||....
T Consensus       251 ~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          251 TGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             SSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred             ccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence            1111      112223345678999999999999999999999999999997644

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-34  Score=273.80  Aligned_cols=201  Identities=15%  Similarity=0.110  Sum_probs=152.7

Q ss_pred             cCcCCCCceEEEEEEEcCCC-c-EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKTTK-R-EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg-~-~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~--   76 (379)
                      ++||+|+||.||+|.+..++ . ..+++|....    .....+.+|+.+++.++||||+++++++.    ..|+++||  
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~  174 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  174 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCT
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCC
Confidence            58999999999999976543 2 2334665543    23456899999999999999999999743    27899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.....
T Consensus       175 ~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivHrDlkp~NIll~~~---~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          175 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS------KKFVHRDLAARNCMLDEK---FTVKVADFGLARDMYDK  245 (373)
T ss_dssp             TCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCC---------
T ss_pred             CCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH------CCEecCccchheEEECCC---CCEEEeecccccccccc
Confidence            6677665                     67888888      999999999999999875   89999999999865433


Q ss_pred             c-----cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         136 I-----EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       136 ~-----~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      .     ......+|+.|+||               |+||++|+|++ |.+||.+.+..+....+..+.....+   ..++
T Consensus       246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p---~~~~  322 (373)
T 3c1x_A          246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP---EYCP  322 (373)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCC---TTCC
T ss_pred             ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCC---CCCC
Confidence            2     12334577889999               99999999999 78899887776677777666543322   3689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+.++|.+||..||.+|||+.+++++
T Consensus       323 ~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          323 DPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999999999999874

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=268.63  Aligned_cols=206  Identities=11%  Similarity=0.015  Sum_probs=149.8

Q ss_pred             ccCcCCCCceEEEEEEEcC---CCcEEEEEEecccc-------------cchHHHHHHHHHHhCCCCCcceeeeecCc--
Q psy6046           8 SHVGGNRARSSCSRKPEKT---TKREVVQWKERNVS-------------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~---tg~~~a~~k~~~~~-------------~~~~~~~E~~il~~l~hpnIv~~~~~~~~--   69 (379)
                      .+.||+|+||.||+|.+..   ++..+|++......             ....+.+|+.+++.++||||+++++++.+  
T Consensus        42 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~  121 (345)
T 2v62_A           42 GKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEF  121 (345)
T ss_dssp             EEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEES
T ss_pred             EeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccccc
Confidence            3489999999999999987   67777743332221             12346788899999999999999998543  


Q ss_pred             -----ceEEeeC-CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          70 -----PLLGLNP-RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        70 -----~~~v~e~-~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                           .|++||| +|+|.+.                    .|+.|||+      +||+||||||+|||++.++ .+.+||
T Consensus       122 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~~~-~~~~kL  194 (345)
T 2v62_A          122 KGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHE------NEYVHGDIKAANLLLGYKN-PDQVYL  194 (345)
T ss_dssp             SSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEESSS-TTSEEE
T ss_pred             CCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCcCHHHEEEccCC-CCcEEE
Confidence                 7999999 6666655                    67888888      9999999999999999752 138999


Q ss_pred             eecccceeeccCc--------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC--CChHHHHHHH
Q psy6046         124 CDFEISRVILDGI--------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG--ETDSETFRNI  178 (379)
Q Consensus       124 ~DFG~a~~~~~~~--------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~--~~~~~~~~~i  178 (379)
                      +|||+++.+....        ......||+.|+||               |+||++|+|++|+.||.+  .+........
T Consensus       195 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~  274 (345)
T 2v62_A          195 ADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAK  274 (345)
T ss_dssp             CCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHH
T ss_pred             EeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHH
Confidence            9999998764322        12456799999999               999999999999999965  2332222222


Q ss_pred             HhCCCCCCccc---c--cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         179 SKAQLDFPDEL---F--EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       179 ~~~~~~~~~~~---~--~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .......+...   .  ..+++++.++|.+||..||.+|||++++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          275 TNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             HHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            11111222211   1  168999999999999999999999999987

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.7e-33  Score=257.25  Aligned_cols=201  Identities=16%  Similarity=0.151  Sum_probs=157.5

Q ss_pred             cCcCCCCceEEEEEEEcC-CCcE-EEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           9 HVGGNRARSSCSRKPEKT-TKRE-VVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-tg~~-~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      +.||+|+||.||+|++.. +++. .+++|....      ...+.+.+|+.+++.++||||+++++++.+  .++++|+  
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~  103 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAP  103 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCceeeEeccc
Confidence            489999999999998654 3442 234665543      224568899999999999999999998765  7899999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......
T Consensus       104 ~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dikp~Nili~~~---~~~kl~Dfg~~~~~~~~  174 (291)
T 1u46_A          104 LGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES------KRFIHRDLAARNLLLATR---DLVKIGDFGLMRALPQN  174 (291)
T ss_dssp             TCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEEEET---TEEEECCCTTCEECCC-
T ss_pred             CCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHh------CCcccCCCchheEEEcCC---CCEEEcccccccccccc
Confidence            6676655                     56888888      999999999999999985   89999999999876543


Q ss_pred             cc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..    .....+|+.|+||               |+|+++|+|++ |..||.+.+..+....+.......+.  ...+++
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  252 (291)
T 1u46_A          175 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPR--PEDCPQ  252 (291)
T ss_dssp             CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCC--CTTCCH
T ss_pred             ccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCC--CcCcCH
Confidence            21    2334578889999               99999999999 99999999988888888776544432  246899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.++|.+||..||.+|||+.++++
T Consensus       253 ~l~~li~~~l~~~p~~Rps~~~l~~  277 (291)
T 1u46_A          253 DIYNVMVQCWAHKPEDRPTFVALRD  277 (291)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHH
Confidence            9999999999999999999999998

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.1e-33  Score=271.22  Aligned_cols=205  Identities=11%  Similarity=0.078  Sum_probs=150.0

Q ss_pred             ccCcCCCCceEEEEEEEcCC-----CcEEEEEEeccccc--------------chHHHHHHHHHHhCCCCCcceeeeecC
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-----KREVVQWKERNVSQ--------------GVVIVDEEQLLKLIKVEPIEKYYSLDP   68 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-----g~~~a~~k~~~~~~--------------~~~~~~E~~il~~l~hpnIv~~~~~~~   68 (379)
                      .+.||+|+||.||+|.+..+     ++.|| +|......              ......|+..++.++||||+++++++.
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~  118 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSSESVGSDAPCV-VKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGL  118 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCSSCCCTTCSEE-EEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEE
T ss_pred             EEEEecCCCeEEEEeeecCccccccccceE-EEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeee
Confidence            34899999999999998776     45666 55543321              122455666777888999999999865


Q ss_pred             c-------ceEEeeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCC
Q psy6046          69 E-------PLLGLNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNC  119 (379)
Q Consensus        69 ~-------~~~v~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~  119 (379)
                      +       .|++||| +|+|.+.                     .|+.|||+      +||+||||||+|||++.+. ++
T Consensus       119 ~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~------~~iiHrDlkp~Nill~~~~-~~  191 (364)
T 3op5_A          119 HDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHE------HEYVHGDIKASNLLLNYKN-PD  191 (364)
T ss_dssp             EEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEEESSC-TT
T ss_pred             eccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCeEEecCCHHHEEEecCC-CC
Confidence            4       6999999 6666654                     67888888      9999999999999998321 38


Q ss_pred             cEEEeecccceeeccCcc--------ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh-HHHH
Q psy6046         120 DIKVCDFEISRVILDGIE--------IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD-SETF  175 (379)
Q Consensus       120 ~ikl~DFG~a~~~~~~~~--------~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~-~~~~  175 (379)
                      .+||+|||+++.+.....        ....+||+.|+||               |+||++|+|++|+.||.+... ....
T Consensus       192 ~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~  271 (364)
T 3op5_A          192 QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYV  271 (364)
T ss_dssp             CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHH
T ss_pred             eEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHH
Confidence            999999999987643321        2345699999999               999999999999999986332 2222


Q ss_pred             HHHHhCC-CCCC---ccc--ccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQ-LDFP---DEL--FEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~-~~~~---~~~--~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ....... ...+   ...  ...+++++.++|..||..||.+||++.++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          272 RDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             HHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            1111100 0000   000  1367999999999999999999999999886

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2e-33  Score=260.68  Aligned_cols=199  Identities=17%  Similarity=0.203  Sum_probs=150.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~   79 (379)
                      +.||+|+||.||+|++..   .+| +|....     ...+.+.+|+.+++.++||||++++++...  .++++||  +|+
T Consensus        30 ~~lG~G~~g~Vy~~~~~~---~va-vK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~  105 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG---DVA-VKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSS  105 (289)
T ss_dssp             EEEEECSSEEEEEEESSS---EEE-EEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEE
T ss_pred             eEecCCCCeEEEEEEEcC---ceE-EEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCc
Confidence            489999999999998543   355 444432     223568999999999999999999998654  7999999  566


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc---C
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD---G  135 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~---~  135 (379)
                      |.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.....   .
T Consensus       106 L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~------~~i~H~Dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~~~  176 (289)
T 3og7_A          106 LYHHLHASETKFEMKKLIDIARQTARGMDYLHA------KSIIHRDLKSNNIFLHED---NTVKIGDFGLATEKSRWSGS  176 (289)
T ss_dssp             HHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEETT---TEEEECCCC-----------
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh------CCcccccCccceEEECCC---CCEEEccceecccccccccc
Confidence            6554                     57888888      999999999999999985   8999999999976543   2


Q ss_pred             ccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCC-cccccCCCH
Q psy6046         136 IEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFP-DELFEDISP  195 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~-~~~~~~~s~  195 (379)
                      .......||+.|+||                  |+|+++|+|++|+.||.+.... .....+..+....+ ......+|+
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (289)
T 3og7_A          177 HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPK  256 (289)
T ss_dssp             -------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCH
T ss_pred             ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCH
Confidence            233456799999999                  9999999999999999875544 44455555544332 233457899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+.+||.+||..||.+|||+.++++
T Consensus       257 ~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          257 RMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHH
Confidence            9999999999999999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.7e-33  Score=263.52  Aligned_cols=201  Identities=20%  Similarity=0.196  Sum_probs=149.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc-----cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN-----VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||.||+|.+..+|+.||+++...     ......+.+|+.+++.++||||+++++++.+   .++++|+  +|
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  117 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAG  117 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSC
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCC
Confidence            489999999999999999999888544332     1234568899999999999999999998654   8999999  55


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      +|.+.                        .|+.|||+      .||+||||||+||+++.+   +.+||+|||++.....
T Consensus       118 ~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~i~H~dl~p~NIl~~~~---~~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          118 DLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS------RRVMHRDIKPANVFITAT---GVVKLGDLGLGRFFSS  188 (310)
T ss_dssp             BHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCC--------
T ss_pred             CHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh------CCeeCCCCcHHHEEEcCC---CCEEEEeccceeeecC
Confidence            66543                        56788888      999999999999999875   8999999999987644


Q ss_pred             Cc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC--ChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         135 GI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE--TDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       135 ~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      .. ......|++.|+||               |+|+++|+|++|..||.+.  +.......+.....+  ......++++
T Consensus       189 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  266 (310)
T 2wqm_A          189 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYP--PLPSDHYSEE  266 (310)
T ss_dssp             ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSC--CCCTTTSCHH
T ss_pred             CCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCC--CCcccccCHH
Confidence            32 23456799999999               9999999999999999764  344555666555433  2223468999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+||.+||..||.+|||+.++++
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~  290 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYD  290 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHH
Confidence            999999999999999999999987

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=3.7e-33  Score=257.25  Aligned_cols=196  Identities=10%  Similarity=0.080  Sum_probs=153.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+  +|+.||++........+.+.+|+.+++.++||||+++++++.    ..|+++|+  +|+|.+
T Consensus        27 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~  104 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD  104 (278)
T ss_dssp             EEEEECSSCEEEEEEE--TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHH
T ss_pred             eEEecCCCceEEEEEE--cCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHH
Confidence            3899999999999986  477777433333345677999999999999999999999853    27999999  556665


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccccc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE  140 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~  140 (379)
                      .                      .|+.|||+      +||+||||||+||+++.+   +.+||+|||++......  ...
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dlkp~Nil~~~~---~~~~l~Dfg~~~~~~~~--~~~  173 (278)
T 1byg_A          105 YLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG------NNFVHRDLAARNVLVSED---NVAKVSDFGLTKEASST--QDT  173 (278)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---SCEEECCCCC------------
T ss_pred             HHHhcccccCCHHHHHHHHHHHHHHHHHHHh------CCccccCCCcceEEEeCC---CcEEEeecccccccccc--ccC
Confidence            4                      56778887      999999999999999875   89999999999765432  234


Q ss_pred             cccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         141 LLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       141 ~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+++.|+||               |+|+++|+|++ |..||.+.+..+....+..+...   .....+++.+.++|.+|
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~  250 (278)
T 1byg_A          174 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM---DAPDGCPPAVYEVMKNC  250 (278)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCC---CCCTTCCHHHHHHHHHH
T ss_pred             CCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC---CCcccCCHHHHHHHHHH
Confidence            4678899999               99999999998 99999988887777777665322   22246899999999999


Q ss_pred             cccCCCCCCCHHHHhc
Q psy6046         205 LIKNPMERMTAKEALK  220 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~  220 (379)
                      |..||.+|||+.++++
T Consensus       251 l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          251 WHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             TCSSGGGSCCHHHHHH
T ss_pred             hcCChhhCCCHHHHHH
Confidence            9999999999999986

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=3e-33  Score=286.69  Aligned_cols=198  Identities=14%  Similarity=0.092  Sum_probs=160.8

Q ss_pred             CcCCCCceEEEEEEE--cCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPE--KTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~--~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      .||+|+||.||+|.+  ..+++.|| +|....     ...+.+.+|+.+|+.++|||||++++++.+  .+++|||  +|
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g  454 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVA-VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  454 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEE-EEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEE-EEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence            699999999999955  45566677 555443     123579999999999999999999998765  7899999  77


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--  136 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--  136 (379)
                      +|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......  
T Consensus       455 ~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~------~~iiHrDLkp~NILl~~~---~~~kL~DFGla~~~~~~~~~  525 (635)
T 4fl3_A          455 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE------SNFVHRDLAARNVLLVTQ---HYAKISDFGLSKALRADENY  525 (635)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECCTTHHHHTTC----
T ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH------CCEeCCCCChHhEEEeCC---CCEEEEEcCCccccccCccc
Confidence            77765                    67888888      999999999999999986   899999999998664332  


Q ss_pred             --cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         137 --EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       137 --~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                        ......+|+.|+||               |+||++|+|++ |+.||.+.+..+....+..+.....   ...+++++.
T Consensus       526 ~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~---p~~~~~~l~  602 (635)
T 4fl3_A          526 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGC---PAGCPREMY  602 (635)
T ss_dssp             ---------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCC---CTTCCHHHH
T ss_pred             cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---CCCCCHHHH
Confidence              12234567889999               99999999998 9999999999888888887653322   236899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||.+||..||.+|||+.++++
T Consensus       603 ~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          603 DLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHcCCCHhHCcCHHHHHH
Confidence            9999999999999999999976

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=3.2e-33  Score=275.85  Aligned_cols=198  Identities=18%  Similarity=0.191  Sum_probs=159.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+..+ ..|| +|....  ...+.+.+|+.+|+.++||||+++++++.+  .|++|||  +|+|.+
T Consensus       190 ~~lG~G~fg~Vy~~~~~~~-~~va-vK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~gsL~~  267 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWNGT-TRVA-IKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLD  267 (452)
T ss_dssp             EEEEECSSCEEEEEEETTT-EEEE-EEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHH
T ss_pred             eeecCCCCeEEEEEEECCC-ceEE-EEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCCCHHH
Confidence            3799999999999998754 4466 565543  234679999999999999999999998765  8999999  677766


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--c
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--I  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--~  138 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++.......  .
T Consensus       268 ~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~ivHrDlkp~Nill~~~---~~~kl~DfG~a~~~~~~~~~~~  338 (452)
T 1fmk_A          268 FLKGETGKYLRLPQLVDMAAQIASGMAYVER------MNYVHRDLRAANILVGEN---LVCKVADFGLARLIEDNEYTAR  338 (452)
T ss_dssp             HHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GCEEECCCCTTC----------
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCChhhEEECCC---CCEEECCCccceecCCCceecc
Confidence            5                      57888888      999999999999999875   8999999999987644321  2


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+++.|+||               |+||++|+|++ |..||.+.+..+....+..+... +  ....+++.+.+||.
T Consensus       339 ~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~-~--~~~~~~~~l~~li~  415 (452)
T 1fmk_A          339 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM-P--CPPECPESLHDLMC  415 (452)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC-C--CCTTSCHHHHHHHH
T ss_pred             cCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-C--CCCCCCHHHHHHHH
Confidence            234567889999               99999999999 99999999988888888776422 2  12368999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..||++|||++++++
T Consensus       416 ~cl~~dP~~Rpt~~~l~~  433 (452)
T 1fmk_A          416 QCWRKEPEERPTFEYLQA  433 (452)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHccCChhhCcCHHHHHH
Confidence            999999999999999987

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2e-33  Score=263.05  Aligned_cols=201  Identities=17%  Similarity=0.179  Sum_probs=158.6

Q ss_pred             cCcCCCCceEEEEEEE-----cCCCcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPE-----KTTKREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~-----~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ..||+|+||.||+|.+     ..+++.|| +|.....    ..+.+.+|+.+++.+ +||||+++++++.+   .|+++|
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e  107 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVA-VKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE  107 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhH-HHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEe
Confidence            4799999999999985     34566666 5555432    346689999999999 89999999998764   899999


Q ss_pred             C--CchhhHH--------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec
Q psy6046          76 P--RPPVYQA--------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD  115 (379)
Q Consensus        76 ~--~g~l~~~--------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~  115 (379)
                      |  +|+|.+.                                      .|+.|||+      +||+||||||+||+++.+
T Consensus       108 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~i~H~dlkp~Nil~~~~  181 (313)
T 1t46_A          108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS------KNCIHRDLAARNILLTHG  181 (313)
T ss_dssp             CCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEETT
T ss_pred             cCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH------CCeecCCCccceEEEcCC
Confidence            9  5555432                                      56788888      999999999999999875


Q ss_pred             CCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHH
Q psy6046         116 FPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFR  176 (379)
Q Consensus       116 ~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~  176 (379)
                         +.+||+|||++........   .....||+.|+||               |+|+++|+|++ |..||.+........
T Consensus       182 ---~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~  258 (313)
T 1t46_A          182 ---RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY  258 (313)
T ss_dssp             ---TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHH
T ss_pred             ---CCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHH
Confidence               8999999999987654332   2345678899999               99999999999 999998876544444


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .........+  ....+++++.++|.+||..||.+|||+.+++++
T Consensus       259 ~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          259 KMIKEGFRML--SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             HHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHhccCCCCC--CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence            4333322222  124689999999999999999999999999873

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=6.4e-33  Score=262.71  Aligned_cols=201  Identities=17%  Similarity=0.122  Sum_probs=162.5

Q ss_pred             ccCcCCCCceEEEEEEEc-------CCCcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceE
Q psy6046           8 SHVGGNRARSSCSRKPEK-------TTKREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-------~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~   72 (379)
                      .+.||+|+||.||+|.+.       .++..|| +|.....    ....+.+|+.+++.+ +||||+++++++.+   .|+
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  118 (334)
T 2pvf_A           40 GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVA-VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV  118 (334)
T ss_dssp             EEEEEECSSCEEEEEEETTCSTTCC---CEEE-EEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEE
T ss_pred             eeEEeecCceeEEEeEeccccccccccceEEE-EeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEE
Confidence            348999999999999976       3455666 5655432    235688999999999 89999999998765   899


Q ss_pred             EeeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          73 GLNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        73 v~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      ++||  +|+|.+.                                    .|+.|||+      +||+||||||+||+++.
T Consensus       119 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dlkp~NIll~~  192 (334)
T 2pvf_A          119 IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS------QKCIHRDLAARNVLVTE  192 (334)
T ss_dssp             EEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECT
T ss_pred             EEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCccceEEEcC
Confidence            9999  5555432                                    56788888      99999999999999987


Q ss_pred             cCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      +   +.+||+|||+++.......   .....+|+.|+||               |+|+++|+|++ |..||.+.+..+..
T Consensus       193 ~---~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~  269 (334)
T 2pvf_A          193 N---NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF  269 (334)
T ss_dssp             T---CCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             C---CCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHH
Confidence            5   8999999999987654322   2334577889999               99999999999 99999999888888


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..+..+....   ....+++++.++|.+||..||.+|||+.+++++
T Consensus       270 ~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          270 KLLKEGHRMD---KPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             HHHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHhcCCCCC---CCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            8887765322   224689999999999999999999999999873

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6e-33  Score=263.06  Aligned_cols=200  Identities=16%  Similarity=0.165  Sum_probs=155.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCc----EEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR----EVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~----~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++||+|+||.||+|.+..++.    .|| +|.....    ....+.+|+.+++.++||||+++++++.+   .|+++|+ 
T Consensus        50 ~~lG~G~~g~Vy~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  128 (333)
T 1mqb_A           50 KVIGAGEFGEVYKGMLKTSSGKKEVPVA-IKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM  128 (333)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             cEEecCCCeEEEEEEEecCCCCccccEE-EEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCC
Confidence            589999999999999876643    255 5655432    23468899999999999999999999765   7999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....
T Consensus       129 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~~~~~~~  199 (333)
T 1mqb_A          129 ENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRVLED  199 (333)
T ss_dssp             TTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCCCC------
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCChheEEECCC---CcEEECCCCcchhhcc
Confidence             5666655                     56788888      999999999999999875   8999999999987643


Q ss_pred             Ccc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         135 GIE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ...    .....+|+.|+||               |+|+++|+|++ |..||.+.+..+....+..+... +.  ...++
T Consensus       200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~-~~--~~~~~  276 (333)
T 1mqb_A          200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRL-PT--PMDCP  276 (333)
T ss_dssp             -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC-CC--CTTCB
T ss_pred             ccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcC-CC--cccCC
Confidence            321    1223467789999               99999999998 99999998888888888766322 21  23689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+.++|.+||..||.+|||+.+++++
T Consensus       277 ~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          277 SAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999999999999874

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.9e-33  Score=262.39  Aligned_cols=201  Identities=18%  Similarity=0.182  Sum_probs=154.6

Q ss_pred             ccCcCCCCceEEEEEEEcC---CCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--------ce
Q psy6046           8 SHVGGNRARSSCSRKPEKT---TKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--------PL   71 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~---tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--------~~   71 (379)
                      .++||+|+||.||+|.+..   ++..|| +|....     ...+.+.+|+.+++.++||||+++++++.+        .|
T Consensus        39 ~~~lg~G~~g~V~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  117 (313)
T 3brb_A           39 GKILGEGEFGSVMEGNLKQEDGTSLKVA-VKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPM  117 (313)
T ss_dssp             EEEEEC-CCCCEEEEEEECTTSCEEEEE-EEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEE
T ss_pred             ccceeecCCeEEEEEEEeccCCceeEEE-EEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccE
Confidence            3489999999999998766   444566 555443     223568999999999999999999998653        48


Q ss_pred             EEeeC--CchhhHH--------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEE
Q psy6046          72 LGLNP--RPPVYQA--------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKV  123 (379)
Q Consensus        72 ~v~e~--~g~l~~~--------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl  123 (379)
                      +++||  +|+|...                          .|+.|||+      +||+||||||+||+++.+   +.+||
T Consensus       118 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dikp~NIli~~~---~~~kl  188 (313)
T 3brb_A          118 VILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN------RNFLHRDLAARNCMLRDD---MTVCV  188 (313)
T ss_dssp             EEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT------TTCCCCCCSGGGEEECTT---SCEEE
T ss_pred             EEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCcceEEEcCC---CcEEE
Confidence            99999  5666543                          57788887      999999999999999875   89999


Q ss_pred             eecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCC
Q psy6046         124 CDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       124 ~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +|||++.......   ......+++.|+||               |+|+++|+|++ |.+||.+.+..+....+..+...
T Consensus       189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~  268 (313)
T 3brb_A          189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRL  268 (313)
T ss_dssp             CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC
T ss_pred             eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCC
Confidence            9999998764432   12334578889999               99999999999 99999998888787777766432


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .   ....+++.+.++|.+||..||.+|||+.+++++
T Consensus       269 ~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          269 K---QPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             C---CBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             C---CCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2   224689999999999999999999999999873

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.8e-33  Score=283.22  Aligned_cols=198  Identities=15%  Similarity=0.122  Sum_probs=159.8

Q ss_pred             CcCCCCceEEEEEEEcCC--CcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cch
Q psy6046          10 VGGNRARSSCSRKPEKTT--KREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~t--g~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~   79 (379)
                      .||+|+||.||+|.++.+  +..|| +|....    ...+.+.+|+.+|+.++|||||++++++.+  +|++|||  +|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVA-IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEE-EEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEE-EEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCc
Confidence            689999999999987644  44455 565543    234679999999999999999999998754  8999999  777


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      |.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++....... 
T Consensus       422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~iiHrDlkp~NILl~~~---~~vkL~DFGla~~~~~~~~~  492 (613)
T 2ozo_A          422 LHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE------KNFVHRNLAARNVLLVNR---HYAKISDFGLSKALGADDSY  492 (613)
T ss_dssp             HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECCCSTTTTCC-----
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH------CCEEcCcCCHHHEEEcCC---CcEEEeeccCcccccCCCce
Confidence            7665                     67888888      999999999999999986   8999999999986543221 


Q ss_pred             ---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 ---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 ---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                         .....+++.|+||               |+||++|+|++ |+.||.+.+..+....+..+....   ....+++++.
T Consensus       493 ~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~---~p~~~~~~l~  569 (613)
T 2ozo_A          493 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME---CPPECPPELY  569 (613)
T ss_dssp             ---------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCC---CCTTCCHHHH
T ss_pred             eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC---CCCcCCHHHH
Confidence               1223456889999               99999999998 999999998888888888765322   1236899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||.+||..||.+|||+.++++
T Consensus       570 ~li~~cl~~dP~~RPs~~~l~~  591 (613)
T 2ozo_A          570 ALMSDCWIYKWEDRPDFLTVEQ  591 (613)
T ss_dssp             HHHHHTTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHH
Confidence            9999999999999999999864

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=3.5e-33  Score=255.65  Aligned_cols=195  Identities=13%  Similarity=0.121  Sum_probs=160.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~-   76 (379)
                      .+.||+|+||.||+|++.  |+.+| +|....     .....+.+|+.+++.++||||+++++++.+     .++++|| 
T Consensus        15 ~~~lg~G~~g~V~~~~~~--~~~~a-vK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (271)
T 3kmu_A           15 LTKLNENHSGELWKGRWQ--GNDIV-VKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWM   91 (271)
T ss_dssp             EEEEEEETTEEEEEEEET--TEEEE-EEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECC
T ss_pred             HHHhcCCCcceEEEEEEC--CeeEE-EEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeeccc
Confidence            348999999999999974  66777 454433     223568999999999999999999998654     5899999 


Q ss_pred             -CchhhHH----------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          77 -RPPVYQA----------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        77 -~g~l~~~----------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       +|+|.+.                      .|+.|||+      +|  |+||||||+||+++.+   +.++|+|||++..
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~------~~~~i~H~dikp~Nil~~~~---~~~~l~~~~~~~~  162 (271)
T 3kmu_A           92 PYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT------LEPLIPRHALNSRSVMIDED---MTARISMADVKFS  162 (271)
T ss_dssp             TTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT------SSSCCTTCCCSGGGEEECTT---SCEEEEGGGSCCT
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc------CCCceecCCCccceEEEcCC---cceeEEeccceee
Confidence             6677665                      56677776      99  9999999999999975   7899999888754


Q ss_pred             eccCccccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         132 ILDGIEIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      .    ......||+.|+||                  |+|+++|+|++|+.||.+.+..+....+.......+  .+..+
T Consensus       163 ~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~  236 (271)
T 3kmu_A          163 F----QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPT--IPPGI  236 (271)
T ss_dssp             T----SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCC--CCTTC
T ss_pred             e----cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCC--CCCCC
Confidence            2    23446789999999                  999999999999999999888887777766543322  23468


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++++.++|.+||..||.+|||++++++
T Consensus       237 ~~~~~~li~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          237 SPHVSKLMKICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999999999986

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=5.7e-34  Score=278.09  Aligned_cols=199  Identities=11%  Similarity=0.095  Sum_probs=152.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCC-CCcceee-----------------
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKV-EPIEKYY-----------------   64 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~h-pnIv~~~-----------------   64 (379)
                      .+||+|+||.||+|++..+|+.|| +|+...      ...+.+.+|+.+++.+.| +|....+                 
T Consensus        84 ~~LG~G~fG~Vy~a~~~~~g~~vA-vK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQETGESFE-VHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  162 (413)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEE-EEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC-
T ss_pred             cccccCCCEEEEEEEecCCCCceE-EEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCC
Confidence            489999999999999999999988 455442      224678999999999987 3221110                 


Q ss_pred             ----e--------ecCcceEEeeC-CchhhHH---------------------------HHHHHHhcccCCCCCCeEeCC
Q psy6046          65 ----S--------LDPEPLLGLNP-RPPVYQA---------------------------SATTKAGSVLFPPLMDFIFFF  104 (379)
Q Consensus        65 ----~--------~~~~~~~v~e~-~g~l~~~---------------------------~al~~lh~~~~~h~~~ivHrD  104 (379)
                          .        ....+++++++ .|+|.+.                           .|+.|||+      +||+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~~iiHrD  236 (413)
T 3dzo_A          163 KKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH------YGLVHTY  236 (413)
T ss_dssp             --------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH------TTEECSC
T ss_pred             CccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCC
Confidence                0        01235667766 4443322                           67888888      9999999


Q ss_pred             CCCCcEEEeecCCCCcEEEeecccceeeccCccccccccCCCCcch-------------------------HHHHHHHHH
Q psy6046         105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------------------SLGVTAYVL  159 (379)
Q Consensus       105 lkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-------------------------SlGvil~~l  159 (379)
                      |||+|||++.+   +.+||+|||+++.....  ....+| +.|+||                         |+||++|+|
T Consensus       237 iKp~NILl~~~---~~~kL~DFG~a~~~~~~--~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~el  310 (413)
T 3dzo_A          237 LRPVDIVLDQR---GGVFLTGFEHLVRDGAS--AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI  310 (413)
T ss_dssp             CCGGGEEECTT---CCEEECCGGGCEETTEE--ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHH
T ss_pred             cccceEEEecC---CeEEEEeccceeecCCc--cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHH
Confidence            99999999986   78999999999764332  455678 999997                         799999999


Q ss_pred             hhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         160 LTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       160 ltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ++|+.||.+.+..+....+..        .+..+|+++.+||.+||..||.+|||+.++++||||+...
T Consensus       311 ltg~~Pf~~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~  371 (413)
T 3dzo_A          311 WCADLPNTDDAALGGSEWIFR--------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  371 (413)
T ss_dssp             HHSSCCCCTTGGGSCSGGGGS--------SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             HHCCCCCCCcchhhhHHHHHh--------hcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHH
Confidence            999999987665433332222        1235789999999999999999999999999999996543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=265.88  Aligned_cols=200  Identities=19%  Similarity=0.200  Sum_probs=144.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC-CCCcceeeeecC--------c---ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK-VEPIEKYYSLDP--------E---PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~-hpnIv~~~~~~~--------~---~~~v~   74 (379)
                      ++||+|+||.||+|++..+|+.||++.....  .....+.+|+.+++.+. ||||+++++++.        .   +++++
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~  113 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLT  113 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEE
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEE
Confidence            4899999999999999999999885443222  23456899999999996 999999998862        2   78999


Q ss_pred             eC-CchhhHH-----------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          75 NP-RPPVYQA-----------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        75 e~-~g~l~~~-----------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      || .|+|.+.                       .|+.|||+      +|  |+||||||+|||++.+   +.+||+|||+
T Consensus       114 e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~------~~~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~  184 (337)
T 3ll6_A          114 ELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR------QKPPIIHRDLKVENLLLSNQ---GTIKLCDFGS  184 (337)
T ss_dssp             ECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT------SSSCCBCCCCCGGGCEECTT---SCEEBCCCTT
T ss_pred             EecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh------CCCCEEEccCCcccEEECCC---CCEEEecCcc
Confidence            99 6666554                       56788887      99  9999999999999985   7999999999


Q ss_pred             ceeeccCcc-------------ccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHH
Q psy6046         129 SRVILDGIE-------------IRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRN  177 (379)
Q Consensus       129 a~~~~~~~~-------------~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~  177 (379)
                      ++.......             ....+||+.|+||                  |+||++|+|++|..||.+........ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~-  263 (337)
T 3ll6_A          185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVN-  263 (337)
T ss_dssp             CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhc-
Confidence            987643221             1245689999999                  99999999999999997765443332 


Q ss_pred             HHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCcc
Q psy6046         178 ISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW  223 (379)
Q Consensus       178 i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  223 (379)
                         .....+.  ....++.+.+||.+||..||.+|||+.|+++|.+
T Consensus       264 ---~~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  304 (337)
T 3ll6_A          264 ---GKYSIPP--HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQ  304 (337)
T ss_dssp             -----CCCCT--TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             ---CcccCCc--ccccchHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence               2222222  2356788999999999999999999999999754

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.5e-32  Score=255.84  Aligned_cols=198  Identities=16%  Similarity=0.144  Sum_probs=156.3

Q ss_pred             CcCCCCceEEEEEE----EcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC
Q psy6046          10 VGGNRARSSCSRKP----EKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~   76 (379)
                      .||+|+||.||+|+    +..+|+.||+ |....    .....+.+|+.+++.++||||+++++++.+     +|+++||
T Consensus        28 ~lg~G~~g~V~~~~~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~  106 (302)
T 4e5w_A           28 DLGEGHFGKVELCRYDPEGDNTGEQVAV-KSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEF  106 (302)
T ss_dssp             EEEECSSEEEEEEEECTTSSSCSEEEEE-EEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEEC
T ss_pred             ccCCCCceEEEEEEEccccCccCeEEEE-EEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEe
Confidence            79999999999999    6778888884 44432    234678999999999999999999998643     6899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....
T Consensus       107 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~------~~i~H~dikp~Nil~~~~---~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          107 LPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS------RQYVHRDLAARNVLVESE---HQVKIGDFGLTKAIE  177 (302)
T ss_dssp             CTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEET---TEEEECCCTTCEECC
T ss_pred             CCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhc------CCcccCCCchheEEEcCC---CCEEECccccccccc
Confidence              6677665                     56788888      999999999999999986   899999999998765


Q ss_pred             cCc----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCC--------------C-hHHHHHHHH
Q psy6046         134 DGI----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGE--------------T-DSETFRNIS  179 (379)
Q Consensus       134 ~~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~--------------~-~~~~~~~i~  179 (379)
                      ...    ......||+.|+||               |+|+++|+|++|..|+...              . .......+.
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLK  257 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHH
T ss_pred             CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHh
Confidence            443    23345688889999               9999999999999986422              1 122233333


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+. ..+  ....+++++.+||.+||..||.+|||+.++++
T Consensus       258 ~~~-~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          258 EGK-RLP--CPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             TTC-CCC--CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             ccC-CCC--CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            332 211  22468999999999999999999999999986

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=7e-33  Score=261.58  Aligned_cols=200  Identities=16%  Similarity=0.124  Sum_probs=157.2

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecC---c--ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---E--PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~---~--~~~v~e~   76 (379)
                      +.||+|+||.||+|+    +..+++.||+ |....   ...+.+.+|+.+++.++||||+++++++.   .  .|+++||
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~vav-K~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~  107 (327)
T 3lxl_A           29 SQLGKGNFGSVELCRYDPLGDNTGALVAV-KQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEY  107 (327)
T ss_dssp             EEEEEETTEEEEEEEECTTSSSCSEEEEE-EEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEEC
T ss_pred             hhccCCCCeEEEEEEeccCCCCcceEEEE-EEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEee
Confidence            389999999999999    5677877774 54433   22355899999999999999999998753   2  7899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~ivH~Dikp~NIl~~~~---~~~kl~Dfg~~~~~~  178 (327)
T 3lxl_A          108 LPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGS------RRCVHRDLAARNILVESE---AHVKIADFGLAKLLP  178 (327)
T ss_dssp             CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEET---TEEEECCGGGCEECC
T ss_pred             cCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCChhhEEECCC---CCEEEcccccceecc
Confidence              6677655                     67888888      999999999999999986   899999999998765


Q ss_pred             cCc----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH---------------HHHHHHH
Q psy6046         134 DGI----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS---------------ETFRNIS  179 (379)
Q Consensus       134 ~~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~---------------~~~~~i~  179 (379)
                      ...    ......||+.|+||               |+|+++|+|++|..||......               .....+.
T Consensus       179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (327)
T 3lxl_A          179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLE  258 (327)
T ss_dssp             TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHH
T ss_pred             cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhh
Confidence            432    12335688889999               9999999999999998654321               2233333


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+. ..+  ....+++++.+||.+||..||.+|||+.+++++
T Consensus       259 ~~~-~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          259 EGQ-RLP--APPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             TTC-CCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccc-CCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            332 111  234689999999999999999999999999764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=9.7e-33  Score=260.27  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=154.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .++||+|+||.||+|++. +|+.||+ |....    .....+.+|+.+++.++||||+++++++.+   .++++||  +|
T Consensus        35 ~~~lg~G~~g~V~~~~~~-~~~~vav-K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  112 (326)
T 3uim_A           35 KNILGRGGFGKVYKGRLA-DGTLVAV-KRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANG  112 (326)
T ss_dssp             TTEEECCSSSEEEEECCS-SSCCEEE-EECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTC
T ss_pred             ceeEecCCCcEEEEEEec-CCCEEEE-EEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCC
Confidence            358999999999999854 5777774 54433    223468999999999999999999998765   7999999  66


Q ss_pred             hhhHH------------------------HHHHHHhcccCCCCC---CeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          79 PVYQA------------------------SATTKAGSVLFPPLM---DFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        79 ~l~~~------------------------~al~~lh~~~~~h~~---~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|.+.                        .|+.|||+      +   ||+||||||+|||++.+   +.+||+|||+++.
T Consensus       113 ~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~~~~ivH~Dlkp~Nil~~~~---~~~kl~Dfg~~~~  183 (326)
T 3uim_A          113 SVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD------HCDPKIIHRDVKAANILLDEE---FEAVVGDFGLAKL  183 (326)
T ss_dssp             BHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH------SSSSCEECCCCSGGGEEECTT---CCEEECCCSSCEE
T ss_pred             CHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh------CCCCCeEeCCCchhhEEECCC---CCEEeccCccccc
Confidence            66554                        57888888      8   99999999999999975   8999999999987


Q ss_pred             eccCc--cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCC-----CChHHHHHHHHh---CC----
Q psy6046         132 ILDGI--EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGG-----ETDSETFRNISK---AQ----  182 (379)
Q Consensus       132 ~~~~~--~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~-----~~~~~~~~~i~~---~~----  182 (379)
                      .....  ......||+.|+||               |+||++|+|++|..||..     .........+..   ..    
T Consensus       184 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (326)
T 3uim_A          184 MDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEA  263 (326)
T ss_dssp             CCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTT
T ss_pred             cCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhh
Confidence            64332  23445699999999               999999999999999952     111111111111   00    


Q ss_pred             ---CCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         183 ---LDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       183 ---~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                         ...........++.+.+++.+||..||.+|||+.++++|..-
T Consensus       264 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          264 LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             SSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             hcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence               000111112234789999999999999999999999997654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=6.3e-33  Score=259.96  Aligned_cols=200  Identities=18%  Similarity=0.166  Sum_probs=157.4

Q ss_pred             cCcCCCCceEEEEEEE-----cCCCcEEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc----ceEEe
Q psy6046           9 HVGGNRARSSCSRKPE-----KTTKREVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~-----~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~v~   74 (379)
                      +.||+|+||.||+|.+     ..+++.|| +|.....    ....+.+|+.+++.+ +||||+++++++.+    +|+++
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~  111 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVA-VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV  111 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEE
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEE-EEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEE
Confidence            4899999999999985     34566666 5554432    234688999999999 69999999998653    89999


Q ss_pred             eC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC
Q psy6046          75 NP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF  116 (379)
Q Consensus        75 e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~  116 (379)
                      ||  +|+|.+.                                    .|+.|||+      +||+||||||+||+++.+ 
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~i~H~dikp~Nil~~~~-  184 (316)
T 2xir_A          112 EFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS------RKCIHRDLAARNILLSEK-  184 (316)
T ss_dssp             ECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG-
T ss_pred             EcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh------CCcccccCccceEEECCC-
Confidence            99  4555432                                    56788888      999999999999999876 


Q ss_pred             CCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh-HHHHH
Q psy6046         117 PNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD-SETFR  176 (379)
Q Consensus       117 ~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~-~~~~~  176 (379)
                        +.+||+|||+++......   ......||+.|+||               |+|+++|+|++ |..||.+... .....
T Consensus       185 --~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~  262 (316)
T 2xir_A          185 --NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR  262 (316)
T ss_dssp             --GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHH
T ss_pred             --CCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHH
Confidence              889999999998654332   22345688999999               99999999998 9999987654 34445


Q ss_pred             HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         177 NISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       177 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+..+....   ....+++++.++|.+||..||.+|||+.++++|
T Consensus       263 ~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          263 RLKEGTRMR---APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             HHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HhccCccCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            555443221   123589999999999999999999999999985

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=5.5e-33  Score=259.59  Aligned_cols=203  Identities=12%  Similarity=0.114  Sum_probs=155.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ++.||+|+||.||+|.+  +++.+|+++....      ...+.+.+|+.+++.++||||+++++++.+   .|+++|+  
T Consensus        36 ~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~  113 (307)
T 2nru_A           36 GNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMP  113 (307)
T ss_dssp             CCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             CCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecC
Confidence            35899999999999985  6777875444322      124568999999999999999999998764   8999999  


Q ss_pred             CchhhHH-----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 RPPVYQA-----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 ~g~l~~~-----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      +|+|.+.                       .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....
T Consensus       114 ~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~------~~i~H~dlkp~Nili~~~---~~~kl~Dfg~~~~~~  184 (307)
T 2nru_A          114 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE------NHHIHRDIKSANILLDEA---FTAKISDFGLARASE  184 (307)
T ss_dssp             TCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT---CCEEECCCTTCEECC
T ss_pred             CCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc------CCeecCCCCHHHEEEcCC---CcEEEeecccccccc
Confidence            6666554                       56788888      999999999999999875   899999999998764


Q ss_pred             cCc---cccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChH----HHHHHHHhCCCCCC------
Q psy6046         134 DGI---EIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDS----ETFRNISKAQLDFP------  186 (379)
Q Consensus       134 ~~~---~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~----~~~~~i~~~~~~~~------  186 (379)
                      ...   ......||+.|+||              |+|+++|+|++|.+||.+....    .....+......++      
T Consensus       185 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (307)
T 2nru_A          185 KFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK  264 (307)
T ss_dssp             SCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSS
T ss_pred             cccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhcccc
Confidence            322   23345799999999              9999999999999999765432    22222222211110      


Q ss_pred             -cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         187 -DELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       187 -~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                       .......++.+.+++.+||..||.+|||+.+++++
T Consensus       265 ~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          265 MNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence             11112345778999999999999999999999873

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.6e-32  Score=272.55  Aligned_cols=219  Identities=14%  Similarity=0.127  Sum_probs=164.6

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcce-eeeecC---cceEEeeC-Cchhh
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEK-YYSLDP---EPLLGLNP-RPPVY   81 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~-~~~~~~---~~~~v~e~-~g~l~   81 (379)
                      ..+.||+|+||.||+|++..+|+.||++..........+.+|+.+++.|+|++++. +..+..   ..|++||| +|+|.
T Consensus        11 i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~g~sL~   90 (483)
T 3sv0_A           11 LGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLE   90 (483)
T ss_dssp             CCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECCCCBHH
T ss_pred             EEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECCCCCHH
Confidence            34589999999999999999999988543333444567899999999999865444 333322   27899999 77666


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---  137 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---  137 (379)
                      +.                     .|+.|||.      +||+||||||+|||++.....+.+||+|||+++.......   
T Consensus        91 ~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~------~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~  164 (483)
T 3sv0_A           91 DLFNFCSRKLSLKTVLMLADQMINRVEFVHS------KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQH  164 (483)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccc
Confidence            65                     57888888      9999999999999995322248999999999988754322   


Q ss_pred             -----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC---hHHHHHHHHhCCCCC-CcccccCC
Q psy6046         138 -----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET---DSETFRNISKAQLDF-PDELFEDI  193 (379)
Q Consensus       138 -----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~---~~~~~~~i~~~~~~~-~~~~~~~~  193 (379)
                           ....+||+.|+||               |+||++|+|++|+.||.+..   ..+.+..+....... .......+
T Consensus       165 ~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  244 (483)
T 3sv0_A          165 IPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGY  244 (483)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTS
T ss_pred             cccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCC
Confidence                 2256899999999               99999999999999998743   334444443332211 22333578


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc----------CccccCCcccc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK----------HPWLMNKKQIM  231 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~----------hp~~~~~~~~~  231 (379)
                      ++++.+||.+||..||.+||++.++++          ++|+....|..
T Consensus       245 p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~~  292 (483)
T 3sv0_A          245 PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTI  292 (483)
T ss_dssp             CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHHH
T ss_pred             cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcCchh
Confidence            999999999999999999999988764          56665555543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1.4e-32  Score=276.88  Aligned_cols=198  Identities=18%  Similarity=0.195  Sum_probs=163.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|.+..+ ..|| +|....  ...+.+.+|+.+|+.|+||||+++++++.+  +|++|||  +|+|.+
T Consensus       273 ~~lG~G~fg~Vy~~~~~~~-~~va-vK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~gsL~~  350 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWNGT-TRVA-IKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLD  350 (535)
T ss_dssp             EEEEECSSEEEEEEEETTT-EEEE-EEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTEEHHH
T ss_pred             eecccCCCeEEEEEEECCC-ceEE-EEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCCcHHH
Confidence            3799999999999998754 4466 555543  234679999999999999999999998765  8999999  667766


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......  ..
T Consensus       351 ~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~ivHrDlkp~NIll~~~---~~~kl~DFG~a~~~~~~~~~~~  421 (535)
T 2h8h_A          351 FLKGETGKYLRLPQLVDMAAQIASGMAYVER------MNYVHRDLRAANILVGEN---LVCKVADFGLARLIEDNEYTAR  421 (535)
T ss_dssp             HHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GCEEECCTTSTTTCCCHHHHTT
T ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCeeCCCCCHhhEEEcCC---CcEEEcccccceecCCCceecc
Confidence            5                      56788888      999999999999999875   899999999998654322  12


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....++..|+||               |+||++|+|++ |..||.+.+..+....+..+... +  ....+++.+.+||.
T Consensus       422 ~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~-~--~~~~~~~~l~~li~  498 (535)
T 2h8h_A          422 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM-P--CPPECPESLHDLMC  498 (535)
T ss_dssp             CSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCC-C--CCTTCCHHHHHHHH
T ss_pred             cCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-C--CCCCCCHHHHHHHH
Confidence            234567789999               99999999999 99999999988888888766322 2  12368999999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q psy6046         203 KILIKNPMERMTAKEALK  220 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||..||++|||++++++
T Consensus       499 ~cl~~dP~~RPt~~~l~~  516 (535)
T 2h8h_A          499 QCWRKEPEERPTFEYLQA  516 (535)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHH
Confidence            999999999999999987

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.9e-32  Score=280.39  Aligned_cols=199  Identities=15%  Similarity=0.151  Sum_probs=161.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCc---EEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR---EVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~   77 (379)
                      +.||+|+||.||+|.+..++.   .+| +|.....    ..+.+.+|+.+++.++||||+++++++.+  .|++|||  +
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~  474 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVA-IKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTL  474 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEE-EEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEE-EEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCC
Confidence            379999999999999876543   344 5554331    23568999999999999999999998765  8999999  6


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++......
T Consensus       475 g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~------~givHrDikp~NILl~~~---~~vkL~DFG~a~~~~~~~  545 (656)
T 2j0j_A          475 GELRSFLQVRKFSLDLASLILYAYQLSTALAYLES------KRFVHRDIAARNVLVSSN---DCVKLGDFGLSRYMEDST  545 (656)
T ss_dssp             CBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECCCCCCCSCCC--
T ss_pred             CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh------CCccccccchHhEEEeCC---CCEEEEecCCCeecCCCc
Confidence            777665                     57888888      999999999999999986   899999999998764433


Q ss_pred             c--ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         137 E--IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       137 ~--~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .  .....+|+.|+||               |+||++|+|++ |.+||.+.+..+....+..+....   ....+++.+.
T Consensus       546 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~---~~~~~~~~l~  622 (656)
T 2j0j_A          546 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP---MPPNCPPTLY  622 (656)
T ss_dssp             --------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCC---CCTTCCHHHH
T ss_pred             ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCC---CCccccHHHH
Confidence            2  2234567899999               99999999997 999999999888888887765322   2246899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q psy6046         199 DFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +||.+||..||.+|||+.++++
T Consensus       623 ~li~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          623 SLMTKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHH
Confidence            9999999999999999999986

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6.4e-33  Score=260.36  Aligned_cols=201  Identities=14%  Similarity=0.101  Sum_probs=154.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc--cccchHHHHHHHHHHhCCCCCcceeeeecC-------cceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN--VSQGVVIVDEEQLLKLIKVEPIEKYYSLDP-------EPLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-------~~~~v~e~--~   77 (379)
                      +.||+|+||.||+|.+..+|+.||++....  ....+.+.+|+.+++.++||||+++++++.       ..|+++||  +
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~  114 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKR  114 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTT
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCC
Confidence            489999999999999999999888543322  233567899999999999999999999864       37899999  6


Q ss_pred             chhhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          78 PPVYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        78 g~l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      |+|.+.                        .|+.|||+      +||+||||||+||+++.+   +.+||+|||++....
T Consensus       115 ~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~------~~ivH~dlkp~NIl~~~~---~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          115 GTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA------KGYAHRDLKPTNILLGDE---GQPVLMDLGSMNQAC  185 (317)
T ss_dssp             CBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---SCEEECCCSSCEESC
T ss_pred             CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCCCCHHHEEEcCC---CCEEEEecCcchhcc
Confidence            677554                        57888888      999999999999999875   899999999987643


Q ss_pred             cCc----------cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCC--hHHHHHHHHhCCC
Q psy6046         134 DGI----------EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGET--DSETFRNISKAQL  183 (379)
Q Consensus       134 ~~~----------~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~--~~~~~~~i~~~~~  183 (379)
                      ...          ......||+.|+||                  |+|+++|+|++|..||....  .......+. ...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~-~~~  264 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ-NQL  264 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH-CC-
T ss_pred             cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh-ccC
Confidence            211          11234579999999                  99999999999999995311  111222222 223


Q ss_pred             CCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         184 DFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       184 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .++.  ...+++++.+||.+||..||.+|||+.+++++
T Consensus       265 ~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          265 SIPQ--SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             -CCC--CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCc--cccCCHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence            3332  24689999999999999999999999999985

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=265.77  Aligned_cols=200  Identities=10%  Similarity=0.074  Sum_probs=153.2

Q ss_pred             cCcCCCCceEEEEEEEcCC--------CcEEEEEEecccccchHHHHHHHHHHhCCCCCccee---------------ee
Q psy6046           9 HVGGNRARSSCSRKPEKTT--------KREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKY---------------YS   65 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~t--------g~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~---------------~~   65 (379)
                      +.||+|+||.||+|++..|        ++.|| +|.....  ..+.+|+.+++.++||||+++               ++
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~va-vK~~~~~--~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~  124 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFS-LKLDAKD--GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMG  124 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEE-EEEEETT--STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCE
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEE-EEEeccc--chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhh
Confidence            4899999999999999885        66677 5655443  578999999999999999983               33


Q ss_pred             ec----CcceEEeeC-CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC
Q psy6046          66 LD----PEPLLGLNP-RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN  118 (379)
Q Consensus        66 ~~----~~~~~v~e~-~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~  118 (379)
                      +.    ...|++||| +|+|.+.                      .|+.|||+      +||+||||||+|||++.+   
T Consensus       125 ~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~ivH~Dikp~NIl~~~~---  195 (352)
T 2jii_A          125 FGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE------NEYVHGNVTAENIFVDPE---  195 (352)
T ss_dssp             EEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH------TTCBCSCCCGGGEEEETT---
T ss_pred             ccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCCHHHEEEcCC---
Confidence            32    227999999 7666655                      67888888      999999999999999975   


Q ss_pred             C--cEEEeecccceeeccCc--------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC--h
Q psy6046         119 C--DIKVCDFEISRVILDGI--------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET--D  171 (379)
Q Consensus       119 ~--~ikl~DFG~a~~~~~~~--------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~--~  171 (379)
                      +  .+||+|||+++......        ......||+.|+||               |+||++|+|++|+.||.+..  .
T Consensus       196 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~  275 (352)
T 2jii_A          196 DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT  275 (352)
T ss_dssp             EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred             CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH
Confidence            5  89999999998764322        12345799999999               99999999999999998753  3


Q ss_pred             HHHHHHH---HhCCCCCC--cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         172 SETFRNI---SKAQLDFP--DELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       172 ~~~~~~i---~~~~~~~~--~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .......   ......++  ...+..+++++.+||.+||..||.+|||++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          276 EDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             HHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence            3333222   22222221  1123467999999999999999999999999987

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3e-32  Score=258.31  Aligned_cols=208  Identities=13%  Similarity=0.094  Sum_probs=159.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHh--CCCCCcceeeeecC-------cceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKL--IKVEPIEKYYSLDP-------EPLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~--l~hpnIv~~~~~~~-------~~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++  +|+.|| +|.........+.+|+++++.  ++||||+++++++.       ..|+++||  
T Consensus        47 ~~~lg~G~~g~Vy~~~~--~~~~va-vK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~  123 (342)
T 1b6c_B           47 QESIGKGRFGEVWRGKW--RGEEVA-VKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHE  123 (342)
T ss_dssp             EEEEEEETTEEEEEEEE--TTEEEE-EEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCT
T ss_pred             EeeecCCCCcEEEEEEE--cCccEE-EEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecC
Confidence            34899999999999996  577777 677666666778899999988  78999999999854       36899999  


Q ss_pred             CchhhHH-------------------HHHHHHhcc--cCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA-------------------SATTKAGSV--LFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~--~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                   .|+.|||.-  -.+|+.||+||||||+||+++.+   +.+||+|||++......
T Consensus       124 ~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~---~~~kL~Dfg~~~~~~~~  200 (342)
T 1b6c_B          124 HGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN---GTCCIADLGLAVRHDSA  200 (342)
T ss_dssp             TCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTT---SCEEECCCTTCEEEETT
T ss_pred             CCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCC---CCEEEEECCCceecccc
Confidence            6688776                   678888810  00113999999999999999875   89999999999877544


Q ss_pred             c-----cccccccCCCCcch---------------------HHHHHHHHHhhC----------CCCCCCC-----ChHHH
Q psy6046         136 I-----EIRELLGTPDYVGK---------------------SLGVTAYVLLTG----------FSPFGGE-----TDSET  174 (379)
Q Consensus       136 ~-----~~~~~~gt~~y~aP---------------------SlGvil~~lltg----------~~Pf~~~-----~~~~~  174 (379)
                      .     ......||+.|+||                     |+||++|+|++|          ..||...     .....
T Consensus       201 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~  280 (342)
T 1b6c_B          201 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  280 (342)
T ss_dssp             TTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             ccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHH
Confidence            3     23456799999999                     999999999999          7898654     23444


Q ss_pred             HHHHHhCCCC--CCccc-ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         175 FRNISKAQLD--FPDEL-FEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       175 ~~~i~~~~~~--~~~~~-~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ...+......  ++... ...+++.+.+||.+||..||.+|||+.++++|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          281 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             HHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            4444443322  22111 11345678999999999999999999999984

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=2.7e-32  Score=257.98  Aligned_cols=208  Identities=13%  Similarity=0.152  Sum_probs=152.5

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhC--CCCCcceeeeecC-------cceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLI--KVEPIEKYYSLDP-------EPLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l--~hpnIv~~~~~~~-------~~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++.  |+.|| +|...........+|.+++..+  +||||+++++++.       .+|++|||  
T Consensus        42 ~~~lg~G~~g~V~~~~~~--~~~va-vK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~  118 (337)
T 3mdy_A           42 VKQIGKGRYGEVWMGKWR--GEKVA-VKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHE  118 (337)
T ss_dssp             EEEEEEETTEEEEEEEET--TEEEE-EEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCT
T ss_pred             EeEeecCCCeEEEEEEEC--CceEE-EEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccC
Confidence            348999999999999864  77777 5666555556667777777665  8999999998753       36899999  


Q ss_pred             CchhhHH-------------------HHHHHHhccc--CCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA-------------------SATTKAGSVL--FPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~-------------------~al~~lh~~~--~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                   .|+.|||+..  ..|..||+||||||+|||++.+   +.+||+|||+++.....
T Consensus       119 ~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~---~~~kl~Dfg~a~~~~~~  195 (337)
T 3mdy_A          119 NGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKN---GTCCIADLGLAVKFISD  195 (337)
T ss_dssp             TCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTT---SCEEECCCTTCEECC--
T ss_pred             CCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCC---CCEEEEeCCCceeeccc
Confidence            6788766                   6788888711  0112299999999999999875   89999999999876433


Q ss_pred             cc-----ccccccCCCCcch---------------------HHHHHHHHHhhC----------CCCCCCCC-----hHHH
Q psy6046         136 IE-----IRELLGTPDYVGK---------------------SLGVTAYVLLTG----------FSPFGGET-----DSET  174 (379)
Q Consensus       136 ~~-----~~~~~gt~~y~aP---------------------SlGvil~~lltg----------~~Pf~~~~-----~~~~  174 (379)
                      ..     ....+||+.|+||                     |+||++|+|++|          ..||....     ....
T Consensus       196 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~  275 (337)
T 3mdy_A          196 TNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDM  275 (337)
T ss_dssp             -------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             cccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhh
Confidence            22     2356899999999                     999999999999          77775421     2222


Q ss_pred             HHHHHhCCC--CCCccc-ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         175 FRNISKAQL--DFPDEL-FEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       175 ~~~i~~~~~--~~~~~~-~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ...+.....  .++... ...+++++.+||.+||..||.+|||+.++++|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          276 REIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             HHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             HHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            222222221  222111 12467789999999999999999999999984

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.98  E-value=2.4e-32  Score=258.54  Aligned_cols=209  Identities=17%  Similarity=0.193  Sum_probs=149.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHH--hCCCCCcceeeeecC--------cceEEeeC-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLK--LIKVEPIEKYYSLDP--------EPLLGLNP-   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~--~l~hpnIv~~~~~~~--------~~~~v~e~-   76 (379)
                      .+.||+|+||.||+|++  +|+.|| +|.........+..|.+++.  .++||||+++++.+.        .+|++||| 
T Consensus        18 ~~~lg~G~~g~Vy~~~~--~~~~va-vK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~   94 (336)
T 3g2f_A           18 LELIGRGRYGAVYKGSL--DERPVA-VKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYY   94 (336)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEE-EEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCC
T ss_pred             eeecccCCCeEEEEEEE--CCeEEE-EEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecC
Confidence            34899999999999975  677777 66666555555666666544  589999999986422        26899999 


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCC---------CeEeCCCCCCcEEEeecCCCCcEEEeecc
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLM---------DFIFFFLQPQNLVMMGDFPNCDIKVCDFE  127 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~---------~ivHrDlkp~Nill~~~~~~~~ikl~DFG  127 (379)
                       +|+|.+.                   .|+.|||+      .         ||+||||||+|||++.+   +.+||+|||
T Consensus        95 ~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~------~~~~~~~~~~~ivH~Dikp~Nill~~~---~~~kL~DFG  165 (336)
T 3g2f_A           95 PNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHT------ELPRGDHYKPAISHRDLNSRNVLVKND---GTCVISDFG  165 (336)
T ss_dssp             TTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHC------CBCCGGGCBCCEECSSCSGGGEEECTT---SCEEECCCT
T ss_pred             CCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHh------hhccccccccceeecccccceEEEcCC---CcEEEeecc
Confidence             7788766                   57888887      7         99999999999999975   899999999


Q ss_pred             cceeeccCc---------cccccccCCCCcch----------------------HHHHHHHHHhhCCCCCCC-CCh----
Q psy6046         128 ISRVILDGI---------EIRELLGTPDYVGK----------------------SLGVTAYVLLTGFSPFGG-ETD----  171 (379)
Q Consensus       128 ~a~~~~~~~---------~~~~~~gt~~y~aP----------------------SlGvil~~lltg~~Pf~~-~~~----  171 (379)
                      +++......         .....+||+.|+||                      |+||++|+|++|..||.. ...    
T Consensus       166 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~  245 (336)
T 3g2f_A          166 LSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ  245 (336)
T ss_dssp             TCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCC
T ss_pred             ceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHH
Confidence            998764321         22345799999999                      999999999999776532 211    


Q ss_pred             -------------HHHHHHHHhCC--CCCCccc--ccCCCHHHHHHHHHhcccCCCCCCCHHHHh------cCccccCCc
Q psy6046         172 -------------SETFRNISKAQ--LDFPDEL--FEDISPEAKDFIAKILIKNPMERMTAKEAL------KHPWLMNKK  228 (379)
Q Consensus       172 -------------~~~~~~i~~~~--~~~~~~~--~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l------~hp~~~~~~  228 (379)
                                   .+....+....  ..+|...  ...+++++.+||.+||..||.+|||+.|++      .++|-++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~  325 (336)
T 3g2f_A          246 MAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKS  325 (336)
T ss_dssp             CTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC---
T ss_pred             HhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhccc
Confidence                         11111121111  1222111  112456899999999999999999999995      467776554

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.98  E-value=3.2e-33  Score=264.99  Aligned_cols=200  Identities=15%  Similarity=0.092  Sum_probs=147.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc-----------cchHHHHHHHHHHhCC---------CCCcceeeee-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS-----------QGVVIVDEEQLLKLIK---------VEPIEKYYSL-   66 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~-----------~~~~~~~E~~il~~l~---------hpnIv~~~~~-   66 (379)
                      .+.||+|+||+||+|++  +|+.||+ |.....           ....+.+|+.+|+.++         ||||+++.++ 
T Consensus        25 ~~~lG~G~~g~V~~~~~--~~~~vAv-K~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~  101 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIA--DHTPVAI-KIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVH  101 (336)
T ss_dssp             CEEEEEETTEEEEEEEE--TTEEEEE-EEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEE
T ss_pred             eeeecccCceEEEEEEe--CCceEEE-EEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhccee
Confidence            35899999999999997  6777774 544332           1267899999999997         6666665554 


Q ss_pred             --------------------------------cCcceEEeeC--CchhhHH-------------------HHHHHHh-cc
Q psy6046          67 --------------------------------DPEPLLGLNP--RPPVYQA-------------------SATTKAG-SV   92 (379)
Q Consensus        67 --------------------------------~~~~~~v~e~--~g~l~~~-------------------~al~~lh-~~   92 (379)
                                                      ...+|++|||  +|++++.                   .|+.||| + 
T Consensus       102 ~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~-  180 (336)
T 2vuw_A          102 CVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEAS-  180 (336)
T ss_dssp             EEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh-
Confidence                                            2348999999  6654443                   6788888 7 


Q ss_pred             cCCCCCCeEeCCCCCCcEEEeecCC-----------------CCcEEEeecccceeeccCccccccccCCCCcch-----
Q psy6046          93 LFPPLMDFIFFFLQPQNLVMMGDFP-----------------NCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-----  150 (379)
Q Consensus        93 ~~~h~~~ivHrDlkp~Nill~~~~~-----------------~~~ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP-----  150 (379)
                           +||+||||||+|||++.++.                 ...+||+|||+|+.....    ..+||+.|+||     
T Consensus       181 -----~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----~~~gt~~y~aPE~~~g  251 (336)
T 2vuw_A          181 -----LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----IVVFCDVSMDEDLFTG  251 (336)
T ss_dssp             -----HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT----EEECCCCTTCSGGGCC
T ss_pred             -----CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC----cEEEeecccChhhhcC
Confidence                 99999999999999998621                 128999999999876543    45899999999     


Q ss_pred             ---------HHHHH-HHHHhhCCCCCCCCCh-HHHHHHHHh---CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHH
Q psy6046         151 ---------SLGVT-AYVLLTGFSPFGGETD-SETFRNISK---AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAK  216 (379)
Q Consensus       151 ---------SlGvi-l~~lltg~~Pf~~~~~-~~~~~~i~~---~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  216 (379)
                               |+|++ .+++++|..||.+... ......+..   .....+...++.+|+++++||.+||..|     |++
T Consensus       252 ~~~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~  326 (336)
T 2vuw_A          252 DGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----SAT  326 (336)
T ss_dssp             CSSHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----SHH
T ss_pred             CCccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----CHH
Confidence                     76655 7888899999954321 122233332   1222233345568999999999999976     999


Q ss_pred             HHh-cCcccc
Q psy6046         217 EAL-KHPWLM  225 (379)
Q Consensus       217 e~l-~hp~~~  225 (379)
                      |+| +||||+
T Consensus       327 e~l~~Hp~f~  336 (336)
T 2vuw_A          327 DLLCQHSLFK  336 (336)
T ss_dssp             HHHHHCGGGC
T ss_pred             HHHhcCCCcC
Confidence            999 999995

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.98  E-value=3.1e-32  Score=256.38  Aligned_cols=199  Identities=17%  Similarity=0.127  Sum_probs=153.8

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEee
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e   75 (379)
                      +.||+|+||.||+|.    +..+|+.|| +|.....    ....+.+|+.+++.++||||+++++++.+     +|+++|
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e  115 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVA-VKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVME  115 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEE-EEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEEC
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEE-EEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEe
Confidence            379999999997764    455777777 4554432    24568999999999999999999998653     689999


Q ss_pred             C--CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          76 P--RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        76 ~--~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      |  +|+|.+.                   .|+.|||+      .||+||||||+||+++.+   +.+||+|||++.....
T Consensus       116 ~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~------~~ivH~Dikp~Nil~~~~---~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          116 YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHA------QHYIHRDLAARNVLLDND---RLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             CCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCGGGCEECCT
T ss_pred             cccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh------CCccCCCCchheEEEcCC---CCEEECCccccccccc
Confidence            9  6677765                   67888888      999999999999999875   8999999999988754


Q ss_pred             Ccc----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH---------------HHHHHHHh
Q psy6046         135 GIE----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS---------------ETFRNISK  180 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~---------------~~~~~i~~  180 (379)
                      ...    .....||+.|+||               |+|+++|+|++|..||......               .....+..
T Consensus       187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
T 3lxp_A          187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLER  266 (318)
T ss_dssp             TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhc
Confidence            432    2345678889999               9999999999999999753221               12222333


Q ss_pred             CCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         181 AQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       181 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +. ..+  ....+++++.+||.+||..||.+|||+.++++
T Consensus       267 ~~-~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          267 GE-RLP--RPDKCPAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             TC-CCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cc-CCC--CCccccHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            22 211  22468999999999999999999999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.98  E-value=1.2e-31  Score=253.21  Aligned_cols=200  Identities=16%  Similarity=0.116  Sum_probs=154.9

Q ss_pred             cCcCCCCceEEEEEE----EcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecC-----cceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKP----EKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDP-----EPLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~----~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~v~e~-   76 (379)
                      +.||+|+||.||+|+    +..+|+.||+++....  .....+.+|+.+++.++||||+++++++.     .+++++|+ 
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~  126 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL  126 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCC
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECC
Confidence            489999999999998    4667877875443332  22356899999999999999999999754     27899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|+|.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||++.....
T Consensus       127 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~------~~ivH~dikp~NIli~~~---~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          127 PYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT------KRYIHRDLATRNILVENE---NRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             TTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEEEET---TEEEECCCTTCEECCS
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh------CCEeccCCCcceEEEcCC---CcEEEecCcchhhccc
Confidence             6677655                     56788888      999999999999999986   8999999999987654


Q ss_pred             Ccc----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChH----------------HHHHHHH
Q psy6046         135 GIE----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDS----------------ETFRNIS  179 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~----------------~~~~~i~  179 (379)
                      ...    .....+++.|+||               |+|+++|+|++|..||......                .....+.
T Consensus       198 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (326)
T 2w1i_A          198 DKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLK  277 (326)
T ss_dssp             SCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHH
T ss_pred             cccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhh
Confidence            332    2234577789999               9999999999999998643110                1122223


Q ss_pred             hCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         180 KAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       180 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+. ..+  ....+++++.+||.+||..||.+|||+.++++
T Consensus       278 ~~~-~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          278 NNG-RLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             TTC-CCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cCC-CCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            222 111  22468999999999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.97  E-value=5.1e-32  Score=254.28  Aligned_cols=203  Identities=12%  Similarity=0.038  Sum_probs=159.8

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      ..++||+|+||.||+|.+..   .+| +|....     ...+.+.+|+.+++.++||||+++++++.+   +++++||  
T Consensus        37 ~~~~lg~G~~g~V~~~~~~~---~~a-vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~  112 (319)
T 2y4i_B           37 IGELIGKGRFGQVYHGRWHG---EVA-IRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCK  112 (319)
T ss_dssp             CCCBCCCSSSSEEEEEEESS---SEE-EEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCC
T ss_pred             EeeEeccCCceEEEEEEEcC---eEE-EEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeeccc
Confidence            34589999999999998754   355 344332     234568899999999999999999998764   7999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc-
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD-  134 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~-  134 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+||++++    +.+||+|||+++.... 
T Consensus       113 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~------~~i~H~dlkp~NIl~~~----~~~~l~Dfg~~~~~~~~  182 (319)
T 2y4i_B          113 GRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA------KGILHKDLKSKNVFYDN----GKVVITDFGLFSISGVL  182 (319)
T ss_dssp             SEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHH------TTCCCCCCCSTTEEEC------CCEECCCSCCC-----
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh------CCccccCCChhhEEEeC----CCEEEeecCCccccccc
Confidence            5666665                     67888888      99999999999999984    7899999999875421 


Q ss_pred             -----CccccccccCCCCcch------------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC
Q psy6046         135 -----GIEIRELLGTPDYVGK------------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF  185 (379)
Q Consensus       135 -----~~~~~~~~gt~~y~aP------------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~  185 (379)
                           ........||+.|+||                        |+|+++|+|++|..||.+.+.......+..+..+.
T Consensus       183 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~  262 (319)
T 2y4i_B          183 QAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPN  262 (319)
T ss_dssp             -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCC
T ss_pred             cccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCC
Confidence                 1123345688899988                        99999999999999999998888888877765433


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..  ...+++++.++|.+||..||.+|||+.++++  .+...
T Consensus       263 ~~--~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~--~l~~l  300 (319)
T 2y4i_B          263 LS--QIGMGKEISDILLFCWAFEQEERPTFTKLMD--MLEKL  300 (319)
T ss_dssp             CC--CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHH--HHTTC
T ss_pred             CC--cCCCCHHHHHHHHHHhcCChhhCcCHHHHHH--HHHHH
Confidence            22  2368899999999999999999999999998  44443

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=4.7e-32  Score=259.99  Aligned_cols=197  Identities=16%  Similarity=0.132  Sum_probs=149.4

Q ss_pred             cCcCCCCceEEEEE-----EEcCCCcEEEEEEecccccchHHHHHHHHHHhCC---CCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRK-----PEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK---VEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a-----~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~---hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++||+|+||.||+|     .+..+++.|| +|.........+.+|+.+++.+.   ||||+.+++++.+   .|++||| 
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~va-vK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~  149 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFV-LKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELY  149 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEE-EEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCC
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEE-EEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEecc
Confidence            37999999999999     4677888888 67666666678899999999998   9999999998643   8999999 


Q ss_pred             -CchhhHH-------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee--------cCCCCcEE
Q psy6046          77 -RPPVYQA-------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG--------DFPNCDIK  122 (379)
Q Consensus        77 -~g~l~~~-------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~--------~~~~~~ik  122 (379)
                       +|+|.+.                         .|+.|||+      +||+||||||+|||++.        +...+.+|
T Consensus       150 ~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~------~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~k  223 (365)
T 3e7e_A          150 SYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD------CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLA  223 (365)
T ss_dssp             CSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCSGGGEEECGGGTCC------CTTEE
T ss_pred             CCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh------CCeecCCCCHHHEEecccccCccccccccCCEE
Confidence             6777665                         56777777      99999999999999987        11238999


Q ss_pred             Eeecccceeec---cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC
Q psy6046         123 VCDFEISRVIL---DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       123 l~DFG~a~~~~---~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      |+|||+|+...   ........+||+.|+||               |+||++|+|++|+.||........     .....
T Consensus       224 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-----~~~~~  298 (365)
T 3e7e_A          224 LIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC-----KPEGL  298 (365)
T ss_dssp             ECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE-----EECSC
T ss_pred             EeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce-----eechh
Confidence            99999997653   23345567899999999               999999999999999964322100     00011


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++..   ..++...+++.+||..+|.+|++..+.+.
T Consensus       299 ~~~~---~~~~~~~~~~~~~l~~~p~~r~~~~~~l~  331 (365)
T 3e7e_A          299 FRRL---PHLDMWNEFFHVMLNIPDCHHLPSLDLLR  331 (365)
T ss_dssp             CTTC---SSHHHHHHHHHHHHCCCCTTCCCCHHHHH
T ss_pred             cccc---CcHHHHHHHHHHHcCCCCCCcchHHHHHH
Confidence            1111   24678899999999999999976544444

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=7e-32  Score=250.48  Aligned_cols=187  Identities=13%  Similarity=0.058  Sum_probs=146.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc------chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ------GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~------~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      .+.||+|+||.||+|++..+|+.|| +|......      ...+.+|+.+++.++||||+++++++.+   .|++|||  
T Consensus        36 ~~~lg~G~~g~Vy~a~~~~~~~~va-vK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  114 (286)
T 3uqc_A           36 LIFHGGVPPLQFWQALDTALDRQVA-LTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIR  114 (286)
T ss_dssp             EEEEEBSTTCEEEEEEETTTTEEEE-EEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEcccCCeEEEEEEecCCCceEE-EEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecC
Confidence            3489999999999999999998888 56554321      2568999999999999999999998764   8999999  


Q ss_pred             CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          77 RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        77 ~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +|+|.+.                  .|+.|||+      +||+||||||+|||++.+   +.+||+++|...        
T Consensus       115 g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~------~givH~Dikp~NIll~~~---g~~kl~~~~~~~--------  177 (286)
T 3uqc_A          115 GGSLQEVADTSPSPVGAIRAMQSLAAAADAAHR------AGVALSIDHPSRVRVSID---GDVVLAYPATMP--------  177 (286)
T ss_dssp             EEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCSGGGEEEETT---SCEEECSCCCCT--------
T ss_pred             CCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHH------CCCccCCCCcccEEEcCC---CCEEEEeccccC--------
Confidence            5666655                  67888888      999999999999999986   889998655321        


Q ss_pred             cccccCCCCcch----HHHHHHHHHhhCCCCCCCCChHHHHH---HHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCC
Q psy6046         139 RELLGTPDYVGK----SLGVTAYVLLTGFSPFGGETDSETFR---NISKAQLDFPDELFEDISPEAKDFIAKILIKNPME  211 (379)
Q Consensus       139 ~~~~gt~~y~aP----SlGvil~~lltg~~Pf~~~~~~~~~~---~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  211 (379)
                             .|...    |+||++|+|++|+.||.+.+..+.+.   ....+....+......+++++.+||.+||..||.+
T Consensus       178 -------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  250 (286)
T 3uqc_A          178 -------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGI  250 (286)
T ss_dssp             -------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSC
T ss_pred             -------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCcc
Confidence                   01111    99999999999999998765533111   11122233333445679999999999999999999


Q ss_pred             CCCHHHHhc
Q psy6046         212 RMTAKEALK  220 (379)
Q Consensus       212 Rpt~~e~l~  220 (379)
                      | |+.++++
T Consensus       251 R-s~~el~~  258 (286)
T 3uqc_A          251 R-SASTLLN  258 (286)
T ss_dssp             C-CHHHHHH
T ss_pred             C-CHHHHHH
Confidence            9 9999988

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=5.8e-31  Score=272.37  Aligned_cols=194  Identities=15%  Similarity=0.166  Sum_probs=154.3

Q ss_pred             cCcCCCCceEEEEEEEcC-CCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--------ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKT-TKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--------PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--------~~~v~e   75 (379)
                      ..||+|+||.||+|.+.. +|+.|| +|....    .....+.+|+.+++.++||||+++++++.+        .|++||
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~va-iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E  164 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVV-LKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVME  164 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEE-EEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEE-EEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEE
Confidence            379999999999999986 677777 554432    223468899999999999999999998653        599999


Q ss_pred             C--CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P--RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~--~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      |  +|+|.+.                  .|+.|||+      +||+||||||+|||++.    +.+||+|||+++.....
T Consensus       165 ~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~------~giiHrDlkp~NIll~~----~~~kl~DFG~a~~~~~~  234 (681)
T 2pzi_A          165 YVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHS------IGLVYNDLKPENIMLTE----EQLKLIDLGAVSRINSF  234 (681)
T ss_dssp             CCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECS----SCEEECCCTTCEETTCC
T ss_pred             eCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH------CCCeecccChHHeEEeC----CcEEEEecccchhcccC
Confidence            9  5666544                  67888888      99999999999999986    48999999999876433


Q ss_pred             ccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         136 IEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                         ...+||+.|+||              |+||++|+|++|.+||.+....         ... ........++.+.+||
T Consensus       235 ---~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~li  301 (681)
T 2pzi_A          235 ---GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVD---------GLP-EDDPVLKTYDSYGRLL  301 (681)
T ss_dssp             ---SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECS---------SCC-TTCHHHHHCHHHHHHH
T ss_pred             ---CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccc---------ccc-ccccccccCHHHHHHH
Confidence               456799999999              9999999999999998753211         011 1111123478899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCccccC
Q psy6046         202 AKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      .+||..||.+||+..+.+.|+|+.-
T Consensus       302 ~~~l~~dP~~R~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          302 RRAIDPDPRQRFTTAEEMSAQLTGV  326 (681)
T ss_dssp             HHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             hhhccCChhhCCCHHHHHHHHHHHH
Confidence            9999999999999999999988753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.90  E-value=1.7e-24  Score=218.90  Aligned_cols=189  Identities=12%  Similarity=0.010  Sum_probs=125.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-------------ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceE
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-------------SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-------------~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~   72 (379)
                      -++.|+.|.+..++...+|+.++ +|....             ...+.+.+|+++|+++ .||||+++++++++   +|+
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~-~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yL  319 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYV-CKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWL  319 (569)
T ss_dssp             C-C--------CCEEEEECSSEE-EEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEE
T ss_pred             ccccCCcccccccccccccceeE-EEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEE
Confidence            46788999999999999999888 454432             1134599999999999 59999999999876   899


Q ss_pred             EeeC--CchhhHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          73 GLNP--RPPVYQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        73 v~e~--~g~l~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                      ||||  ||+|.+.                 .|+.|+|+      +|||||||||+|||++.+   +.+||+|||+|+...
T Consensus       320 VMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~------~GIIHRDIKPeNILL~~d---g~vKL~DFGlAr~~~  390 (569)
T 4azs_A          320 VMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEK------QGFWHDDVRPWNVMVDAR---QHARLIDFGSIVTTP  390 (569)
T ss_dssp             EEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHH------TTCEESCCCGGGEEECTT---SCEEECCCTTEESCC
T ss_pred             EEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHH------CCceeccCchHhEEECCC---CCEEEeecccCeeCC
Confidence            9999  8888887                 78889998      999999999999999886   899999999998765


Q ss_pred             cC-ccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DG-IEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~-~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      .. ....+.+||+.||||              |+|+++|.|.++..|+        ...+..    .+...     ..+.
T Consensus       391 ~~~~~~~t~vGTp~YmAPE~l~g~~~~~~d~~s~g~~~~~l~~~~~~~--------~~~l~~----~~~~~-----~~~~  453 (569)
T 4azs_A          391 QDCSWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSNW--------LYAVWQ----EPVER-----WNFV  453 (569)
T ss_dssp             ---CCSHHHHHHHHHHHHHHC-----------------CCCCTTHHHH--------HHHHHT----SCGGG-----CSHH
T ss_pred             CCCccccCceechhhccHHHhCCCCCCcccccccccchhhhccccchh--------HHHhhc----CCCCC-----CcHH
Confidence            43 345668899999998              5566555554443332        111111    11110     1234


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      ++...+...+|..|+.......++|..
T Consensus       454 ~l~~~l~~~~~~~~~~~~~~~~~~~~~  480 (569)
T 4azs_A          454 LLLALFEKKAKLPSAEQQRGATEQWII  480 (569)
T ss_dssp             HHHHHHHTGGGSCCGGGSSCCHHHHHH
T ss_pred             HHHHHHhCCCCCCCCChhhhccchhHH
Confidence            566666667777777666555555553

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.85  E-value=2.6e-21  Score=194.49  Aligned_cols=130  Identities=16%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc----------cchHHHHHHHHHHhCCCCCcc--eeeeecCc-ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS----------QGVVIVDEEQLLKLIKVEPIE--KYYSLDPE-PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~----------~~~~~~~E~~il~~l~hpnIv--~~~~~~~~-~~~v~   74 (379)
                      +++||+|+||.||+|.  ..+..+++++.....          ..+.+.+|+++|+.++||||+  .++++..+ .|++|
T Consensus       341 ~~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          341 EHLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             -------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            4589999999999994  566777754433221          124479999999999999999  66766543 89999


Q ss_pred             eC--CchhhHH------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc---
Q psy6046          75 NP--RPPVYQA------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---  137 (379)
Q Consensus        75 e~--~g~l~~~------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~---  137 (379)
                      ||  +|+|.+.            .++.|||+      +||+||||||+|||++.     .+||+|||+++.......   
T Consensus       419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~------~gIiHrDiKp~NILl~~-----~~kL~DFGla~~~~~~~~~~~  487 (540)
T 3en9_A          419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHK------NDVIHNDLTTSNFIFDK-----DLYIIDFGLGKISNLDEDKAV  487 (540)
T ss_dssp             ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHH------TTEECTTCCTTSEEESS-----SEEECCCTTCEECCCHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------CcCccCCCCHHHEEECC-----eEEEEECccCEECCCcccccc
Confidence            99  6888765            77888888      99999999999999985     899999999998754321   


Q ss_pred             -----ccccccCCCCcch
Q psy6046         138 -----IRELLGTPDYVGK  150 (379)
Q Consensus       138 -----~~~~~gt~~y~aP  150 (379)
                           ....+||+.|+||
T Consensus       488 ~~~~~~~~~~GT~~y~AP  505 (540)
T 3en9_A          488 DLIVFKKAVLSTHHEKFD  505 (540)
T ss_dssp             HHHHHHHHHHHHCGGGHH
T ss_pred             chhhhhhhhcCCCCcCCH
Confidence                 2467899999999

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.79  E-value=4.7e-19  Score=163.66  Aligned_cols=111  Identities=16%  Similarity=0.083  Sum_probs=88.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---------------------cchHHHHHHHHHHhCCCCCcceeeee
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---------------------QGVVIVDEEQLLKLIKVEPIEKYYSL   66 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---------------------~~~~~~~E~~il~~l~hpnIv~~~~~   66 (379)
                      ...||+|+||.||+|.+ .+|+.|| +|.....                     ....+.+|+.+|+.++|+++..+++.
T Consensus        95 ~~~iG~G~~g~Vy~~~~-~~g~~va-lK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~~~~~  172 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYS-EKFGECV-VKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW  172 (282)
T ss_dssp             EEEEEECSSEEEEEEEE-TTTEEEE-EEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             cCEeccCCCceEEEEEe-CCCCEEE-EEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCeEEec
Confidence            36899999999999999 7888888 4554321                     23468899999999996555554433


Q ss_pred             cCcceEEeeC--CchhhHH-------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          67 DPEPLLGLNP--RPPVYQA-------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        67 ~~~~~~v~e~--~g~l~~~-------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                       ...|++|||  +|+|.+.             .|+.|||+      +||+||||||+|||++ +   +.+||+|||+|+.
T Consensus       173 -~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~------~giiHrDlkp~NILl~-~---~~vkl~DFG~a~~  241 (282)
T 1zar_A          173 -EGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYH------RGIVHGDLSQYNVLVS-E---EGIWIIDFPQSVE  241 (282)
T ss_dssp             -ETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHH------TTEECSCCSTTSEEEE-T---TEEEECCCTTCEE
T ss_pred             -cceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHH------CCCEeCCCCHHHEEEE-C---CcEEEEECCCCeE
Confidence             348999999  6677653             67888888      9999999999999999 5   8999999999964

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.70  E-value=2.7e-17  Score=149.85  Aligned_cols=111  Identities=9%  Similarity=0.040  Sum_probs=84.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE--EEEEEecccc--c-------------------------chHHHHHHHHHHhCCCCC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE--VVQWKERNVS--Q-------------------------GVVIVDEEQLLKLIKVEP   59 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~--~a~~k~~~~~--~-------------------------~~~~~~E~~il~~l~hpn   59 (379)
                      ..||+|+||.||+|.+..+|+.  || +|+....  .                         ...+.+|+.+|+.|.|++
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vA-vK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~  131 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMA-VKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAG  131 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEE-EEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEE-EEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCC
Confidence            4799999999999998778888  77 5543221  0                         125789999999999886


Q ss_pred             c--ceeeeecCcceEEeeC-C--c----hhhHH-----------------HHHHHHh-cccCCCCCCeEeCCCCCCcEEE
Q psy6046          60 I--EKYYSLDPEPLLGLNP-R--P----PVYQA-----------------SATTKAG-SVLFPPLMDFIFFFLQPQNLVM  112 (379)
Q Consensus        60 I--v~~~~~~~~~~~v~e~-~--g----~l~~~-----------------~al~~lh-~~~~~h~~~ivHrDlkp~Nill  112 (379)
                      +  ...+.. ...|++||| +  |    .+.+.                 .++.||| .      .||+||||||+|||+
T Consensus       132 i~~p~~~~~-~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~------~givHrDlkp~NILl  204 (258)
T 1zth_A          132 VSVPQPYTY-MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQE------AELVHADLSEYNIMY  204 (258)
T ss_dssp             CCCCCEEEE-ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHT------SCEECSSCSTTSEEE
T ss_pred             CCCCeEEEc-CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHH------CCEEeCCCCHHHEEE
Confidence            4  334443 467899999 3  2    33322                 5677777 7      999999999999999


Q ss_pred             eecCCCCcEEEeecccceee
Q psy6046         113 MGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus       113 ~~~~~~~~ikl~DFG~a~~~  132 (379)
                      +.     .++|+|||+|...
T Consensus       205 ~~-----~~~liDFG~a~~~  219 (258)
T 1zth_A          205 ID-----KVYFIDMGQAVTL  219 (258)
T ss_dssp             SS-----SEEECCCTTCEET
T ss_pred             cC-----cEEEEECcccccC
Confidence            74     7999999999764

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.44  E-value=1.2e-13  Score=131.85  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=77.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc-----------------ch--------HHHHHHHHHHhCCCCCcc-
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ-----------------GV--------VIVDEEQLLKLIKVEPIE-   61 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~-----------------~~--------~~~~E~~il~~l~hpnIv-   61 (379)
                      +..||+|+||.||+|.+. +|+.|| +|+.....                 ..        ...+|...|..|.++.+. 
T Consensus       100 ~~~IG~Gk~a~VY~a~d~-~G~~vA-vKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~v  177 (397)
T 4gyi_A          100 GSRIGVGKESDIMIVADE-KGKQKV-LKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPV  177 (397)
T ss_dssp             EEEEEECSSEEEEEEECT-TCCEEE-EEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             cCEeeeCCceEEEEEECC-CCCEEE-EEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            347999999999999975 688888 55432210                 00        124566666666544432 


Q ss_pred             -eeeeecCcceEEeeC--CchhhHH--------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC------
Q psy6046          62 -KYYSLDPEPLLGLNP--RPPVYQA--------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN------  118 (379)
Q Consensus        62 -~~~~~~~~~~~v~e~--~g~l~~~--------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~------  118 (379)
                       ..+. ....+++|||  ++.+...              .++.+||.      +|||||||||.|||++.++..      
T Consensus       178 p~p~~-~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~------~gIVHrDLKp~NILl~~dgd~~d~~~~  250 (397)
T 4gyi_A          178 PEPIA-QSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAK------HGLIHGDFNEFNILIREEKDAEDPSSI  250 (397)
T ss_dssp             CCEEE-EETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHH------TTEECSCCSTTSEEEEEEECSSCTTSE
T ss_pred             Ceeee-ccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHH------CCCcCCCCCHHHEEEeCCCCccccccc
Confidence             1222 2246899999  4444332              67788888      999999999999999986210      


Q ss_pred             -CcEEEeeccccee
Q psy6046         119 -CDIKVCDFEISRV  131 (379)
Q Consensus       119 -~~ikl~DFG~a~~  131 (379)
                       ..+.|+||+-+-.
T Consensus       251 ~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          251 TLTPIIIXFPQMVS  264 (397)
T ss_dssp             EEEEEECCCTTCEE
T ss_pred             ccceEEEEeCCccc
Confidence             1389999998754

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.70  E-value=6.6e-08  Score=86.72  Aligned_cols=116  Identities=10%  Similarity=-0.076  Sum_probs=79.0

Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCC--cceeeeecCc---ceEEeeC--Cchhh--
Q psy6046          11 GGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEP--IEKYYSLDPE---PLLGLNP--RPPVY--   81 (379)
Q Consensus        11 lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpn--Iv~~~~~~~~---~~~v~e~--~g~l~--   81 (379)
                      .+.|+.+.||++.. .+|..++ +|.........+.+|+.+++.+.+.+  +.+++.+..+   .+++||+  +..+.  
T Consensus        28 ~~gg~~~~v~~~~~-~~g~~~v-lK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~~~  105 (264)
T 1nd4_A           28 TIGCSDAAVFRLSA-QGRPVLF-VKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSS  105 (264)
T ss_dssp             SCTTSSCEEEEEEC-TTSCCEE-EEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTTS
T ss_pred             ccCCCCceEEEEec-CCCCeEE-EEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccCcC
Confidence            34566799999964 4566666 56554444466889999999997544  4446665443   6999999  44442  


Q ss_pred             -----HH-----HHHHHHhccc----------------------------------------------------CCCCCC
Q psy6046          82 -----QA-----SATTKAGSVL----------------------------------------------------FPPLMD   99 (379)
Q Consensus        82 -----~~-----~al~~lh~~~----------------------------------------------------~~h~~~   99 (379)
                           ..     .++..||++-                                                    ..+..+
T Consensus       106 ~~~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (264)
T 1nd4_A          106 HLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLV  185 (264)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEE
T ss_pred             cCCHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeE
Confidence                 11     5567777642                                                    012234


Q ss_pred             eEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046         100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus       100 ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ++|+|++|.||++++.   ..+.|+|||.+..
T Consensus       186 l~HgDl~~~Nil~~~~---~~~~liD~~~a~~  214 (264)
T 1nd4_A          186 VTHGDACLPNIMVENG---RFSGFIDCGRLGV  214 (264)
T ss_dssp             EECSSCCGGGEEEETT---EEEEECCCTTCEE
T ss_pred             EECCCCCCCcEEEECC---cEEEEEcchhccc
Confidence            9999999999999763   4567999999864

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.65  E-value=6.3e-08  Score=87.41  Aligned_cols=117  Identities=9%  Similarity=0.009  Sum_probs=82.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCC-CCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      .++|.|+.+.||++..  .|..++ +|....   .....+.+|+.+++.|. +..+.+++.+..+   .|++||+  |..
T Consensus        20 ~~~~g~s~~~v~~~~~--~~~~~v-lK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~   96 (263)
T 3tm0_A           20 KDTEGMSPAKVYKLVG--ENENLY-LKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVL   96 (263)
T ss_dssp             ECCSCCSSSEEEEEEC--SSCEEE-EEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEE
T ss_pred             eeccCCCCCeEEEEEC--CCCcEE-EEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCee
Confidence            3677788899999973  356666 565543   33456999999999996 5556666665433   7899999  434


Q ss_pred             hhHH---------------HHHHHHhcccC--------------------------------------------------
Q psy6046          80 VYQA---------------SATTKAGSVLF--------------------------------------------------   94 (379)
Q Consensus        80 l~~~---------------~al~~lh~~~~--------------------------------------------------   94 (379)
                      +.+.               .++..||++-.                                                  
T Consensus        97 l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  176 (263)
T 3tm0_A           97 CSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKT  176 (263)
T ss_dssp             HHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHH
T ss_pred             hhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHh
Confidence            4331               56788887210                                                  


Q ss_pred             ---CCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          95 ---PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        95 ---~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                         ....+++|+|++|.||++++.   ..+.|+||+.+..
T Consensus       177 ~~~~~~~~l~HgDl~~~Nil~~~~---~~~~lIDwe~a~~  213 (263)
T 3tm0_A          177 EKPEEELVFSHGDLGDSNIFVKDG---KVSGFIDLGRSGR  213 (263)
T ss_dssp             CCCCCCEEEECSSCCTTSEEEETT---EEEEECCCTTCEE
T ss_pred             cCCCCCceEECCCCCcCcEEEECC---cEEEEEEchhccc
Confidence               112569999999999999753   4567999998754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.37  E-value=2.3e-06  Score=80.92  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc--c----ccchHHHHHHHHHHhCCC--CCcceeeeecCc------ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN--V----SQGVVIVDEEQLLKLIKV--EPIEKYYSLDPE------PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~----~~~~~~~~E~~il~~l~h--pnIv~~~~~~~~------~~~v~   74 (379)
                      ..|+.|.++.||++...  +..++ +|...  .    .....+.+|..+++.|..  ..+.+++.++.+      .|++|
T Consensus        44 ~~l~~G~sn~~y~v~~~--~~~~v-lr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVTP--GQTYV-MRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EECCC-CCSCEEEEECS--SCEEE-EECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             EEcCCcccceEEEEEEC--CceEE-EEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            36889999999998743  44566 44443  2    224578999999999984  446677776543      68999


Q ss_pred             eC-Cc-hhhH----------------H--HHHHHHhcccC----------------------------------------
Q psy6046          75 NP-RP-PVYQ----------------A--SATTKAGSVLF----------------------------------------   94 (379)
Q Consensus        75 e~-~g-~l~~----------------~--~al~~lh~~~~----------------------------------------   94 (379)
                      |+ .| .+.+                .  .++..||.+-.                                        
T Consensus       121 e~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (359)
T 3dxp_A          121 EFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSL  200 (359)
T ss_dssp             ECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             EecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHH
Confidence            99 33 3311                1  56788887411                                        


Q ss_pred             ----------CC--CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          95 ----------PP--LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        95 ----------~h--~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                                ..  ..+++|+|++|.||+++.+++ ..+.|+||+.+..
T Consensus       201 ~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~-~v~~viDwe~a~~  248 (359)
T 3dxp_A          201 MDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEP-RVLAVLDWELSTL  248 (359)
T ss_dssp             HHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSS-CEEEECCCTTCEE
T ss_pred             HHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCC-cEEEEECcccccc
Confidence                      01  367999999999999987522 3469999999864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.92  E-value=3.5e-05  Score=70.89  Aligned_cols=151  Identities=13%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCC-CCC--cceeeeecC------cceEEeeC--C
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIK-VEP--IEKYYSLDP------EPLLGLNP--R   77 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~-hpn--Iv~~~~~~~------~~~~v~e~--~   77 (379)
                      .++.|....||++.     ..++ +|.... .....+.+|..+|+.+. +..  +.+++....      -.|++|++  +
T Consensus        27 ~~~~G~~n~v~~v~-----~~~v-lR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G  100 (304)
T 3sg8_A           27 ISGEGNDCIAYEIN-----RDFI-FKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG  100 (304)
T ss_dssp             EEEECSSEEEEEST-----TSEE-EEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred             ecCCCCcceEEEEC-----CEEE-EEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence            57889999999974     3455 444333 23567899999999884 332  333444322      14788998  3


Q ss_pred             chhhHH------------------HHHHHHhcccC---------------------------------------------
Q psy6046          78 PPVYQA------------------SATTKAGSVLF---------------------------------------------   94 (379)
Q Consensus        78 g~l~~~------------------~al~~lh~~~~---------------------------------------------   94 (379)
                      ..+...                  ..+..||++-.                                             
T Consensus       101 ~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (304)
T 3sg8_A          101 VPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDI  180 (304)
T ss_dssp             EECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             eECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHH
Confidence            222210                  34555554110                                             


Q ss_pred             -------CCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc---------------ccccCCCCcc-h-
Q psy6046          95 -------PPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR---------------ELLGTPDYVG-K-  150 (379)
Q Consensus        95 -------~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~---------------~~~gt~~y~a-P-  150 (379)
                             .....++|+|++|.||+++.+. ...+.|+||+.+..........               .......... | 
T Consensus       181 l~~~~~~~~~~~~~HgD~~~~N~l~~~~~-~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~  259 (304)
T 3sg8_A          181 LENEIYFKYYPCLIHNDFSSDHILFDTEK-NTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPT  259 (304)
T ss_dssp             HTCGGGTCCCCEEECSCCCGGGEEEETTT-TEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHH
T ss_pred             HhccccccCCceeEeCCCCcccEEEeCCC-CCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHH
Confidence                   1134699999999999998731 1567899999987642211000               0111112223 3 


Q ss_pred             ------------HHHHHHHHHhhCCCCCC
Q psy6046         151 ------------SLGVTAYVLLTGFSPFG  167 (379)
Q Consensus       151 ------------SlGvil~~lltg~~Pf~  167 (379)
                                  ++|.++|.+.+|..||.
T Consensus       260 ~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          260 VLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                        89999999999988873

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.76  E-value=0.00017  Score=64.87  Aligned_cols=115  Identities=15%  Similarity=0.044  Sum_probs=74.2

Q ss_pred             CCCce-EEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCC-CCcceeeeec---CcceEEeeC-Cch-hhHH--
Q psy6046          13 NRARS-SCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKV-EPIEKYYSLD---PEPLLGLNP-RPP-VYQA--   83 (379)
Q Consensus        13 ~G~fG-~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~h-pnIv~~~~~~---~~~~~v~e~-~g~-l~~~--   83 (379)
                      .|..| .||+......+..++ +|.........+.+|..+|+.|.. -.+-+++.+.   ...+++||+ .|. +.+.  
T Consensus        34 ~G~S~~~v~rl~~~~~~~~~~-lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~  112 (272)
T 4gkh_A           34 VGQSGATIYRLYGKPNAPELF-LKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLE  112 (272)
T ss_dssp             CSSSSCEEEEEECCTTCCCEE-EEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHH
T ss_pred             CCCcCCeEEEEEecCCCeEEE-EEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcccccccc
Confidence            35444 699987666666666 566555556678999999998862 1133344433   337899999 332 2211  


Q ss_pred             --------------HHHHHHhcccC----------------------------------------------------CCC
Q psy6046          84 --------------SATTKAGSVLF----------------------------------------------------PPL   97 (379)
Q Consensus        84 --------------~al~~lh~~~~----------------------------------------------------~h~   97 (379)
                                    ..+.-||.+-.                                                    .+.
T Consensus       113 ~~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  192 (272)
T 4gkh_A          113 EYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPD  192 (272)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCC
Confidence                          33455554311                                                    112


Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..++|+|+.|.||+++..   +.+-|+||+.+..
T Consensus       193 ~~l~HGDl~~~Nil~~~~---~~~~viDwe~a~~  223 (272)
T 4gkh_A          193 SVVTHGDFSLDNLIFDEG---KLIGCIDVGRVGI  223 (272)
T ss_dssp             EEEECSCCCTTSEEEETT---EEEEECCCTTCEE
T ss_pred             cEEEcCCCCCCeEEEECC---eEEEEEECccccc
Confidence            348999999999999864   5567999998864

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.56  E-value=0.00032  Score=66.97  Aligned_cols=67  Identities=10%  Similarity=-0.018  Sum_probs=43.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----------ccchHHHHHHHHHHhCCC--CCc-ceeeeecCc-ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----------SQGVVIVDEEQLLKLIKV--EPI-EKYYSLDPE-PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----------~~~~~~~~E~~il~~l~h--pnI-v~~~~~~~~-~~~v~   74 (379)
                      ..||.|..+.||++....+++.++ +|....          ....++..|.++|+.+..  |.. .+++.+..+ .+++|
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~v-vK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~~~~~lvm  114 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALI-IKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVM  114 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEE-EEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEE
T ss_pred             EECCCCceEEEEEEEECCCCcEEE-EEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcCCccEEEE
Confidence            478999999999997666666766 453221          123457889999998853  333 355555433 68899


Q ss_pred             eC
Q psy6046          75 NP   76 (379)
Q Consensus        75 e~   76 (379)
                      |+
T Consensus       115 E~  116 (397)
T 2olc_A          115 ED  116 (397)
T ss_dssp             CC
T ss_pred             Ee
Confidence            99

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.08  E-value=0.0013  Score=60.40  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-ccchHHHHHHHHHHhCCCC---CcceeeeecC----cceEEeeC-Cc-h
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-SQGVVIVDEEQLLKLIKVE---PIEKYYSLDP----EPLLGLNP-RP-P   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-~~~~~~~~E~~il~~l~hp---nIv~~~~~~~----~~~~v~e~-~g-~   79 (379)
                      .++.|....||+.     |..+++ |.... .....+.+|..+|+.|.+.   .+.+.+.+..    ..+++||+ .| .
T Consensus        26 ~l~~G~~n~v~~v-----g~~~Vl-R~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~   99 (306)
T 3tdw_A           26 SLGEGFRNYAILV-----NGDWVF-RFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI   99 (306)
T ss_dssp             EEEECSSEEEEEE-----TTTEEE-EEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred             ecCCCcceeEEEE-----CCEEEE-EecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence            5778888899998     445663 44332 2346789999999999852   1334443332    26899999 32 2


Q ss_pred             hhH----------------H--HHHHHHhcccC-----------------------------------------------
Q psy6046          80 VYQ----------------A--SATTKAGSVLF-----------------------------------------------   94 (379)
Q Consensus        80 l~~----------------~--~al~~lh~~~~-----------------------------------------------   94 (379)
                      +..                .  ..+..||++-.                                               
T Consensus       100 l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  179 (306)
T 3tdw_A          100 LGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSY  179 (306)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred             CchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            221                0  33444443210                                               


Q ss_pred             -------CCCCCeEeCCCCCCcEEEeecCCCCc-EEEeeccccee
Q psy6046          95 -------PPLMDFIFFFLQPQNLVMMGDFPNCD-IKVCDFEISRV  131 (379)
Q Consensus        95 -------~h~~~ivHrDlkp~Nill~~~~~~~~-ikl~DFG~a~~  131 (379)
                             .....++|+|+.|.||+++.++..+. +.|+||+.+..
T Consensus       180 l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          180 MTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                   13456899999999999986211234 58999998865

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.73  E-value=0.0074  Score=55.69  Aligned_cols=31  Identities=13%  Similarity=0.033  Sum_probs=27.0

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ..+++|+|+.|.||+++.+   +.+.|+||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~---~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGEN---EQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGG---GCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCC---CcEEEEehhhcc
Confidence            4689999999999999764   689999999875

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.26  E-value=0.025  Score=51.15  Aligned_cols=64  Identities=14%  Similarity=0.061  Sum_probs=42.9

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCC---CcceeeeecCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVE---PIEKYYSLDPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hp---nIv~~~~~~~~~~~v~e~   76 (379)
                      -+|.|..+.||+... .+|+.++ +|....   .....+..|...|+.|.--   .+.+++... +.+++||+
T Consensus        22 ~~g~G~~~~vyrv~l-~DG~~~~-vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~-~~~lv~e~   91 (288)
T 3f7w_A           22 ERGHSHRWHLYRVEL-ADGTPLF-VKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD-DRTLAMEW   91 (288)
T ss_dssp             EEEEETTEEEEEEEE-TTSCEEE-EEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE-TTEEEEEC
T ss_pred             ecCCCCCeEEEEEEE-CCCCEEE-EEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc-CceEEEEe
Confidence            478899999999974 4677777 455332   2234578999999988622   234455544 45777887

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=96.20  E-value=0.014  Score=44.08  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=53.1

Q ss_pred             ccccccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         295 SQMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .....++++....+.+.|..+|.+     |.|.++ .+++..++...+. +...+++++++.+|.|+.+.+
T Consensus        25 ~~~~~l~~~~~~el~~~F~~~D~d-----~~G~I~-~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I   89 (100)
T 2lv7_A           25 QRPVDIPEDELEEIREAFKVFDRD-----GNGFIS-KQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQV   89 (100)
T ss_dssp             CSCCCCCGGGHHHHHHHHHHTCSS-----CSSCBC-HHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSB
T ss_pred             cccccCCHHHHHHHHHHHHHHcCC-----CCCcCC-HHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeE
Confidence            344566777888889999999999     999999 9999999988654 678899999999988776554

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.04  E-value=0.013  Score=54.74  Aligned_cols=66  Identities=8%  Similarity=0.109  Sum_probs=43.0

Q ss_pred             Cc-CCCCceEEEEEEEcC------CCcEEEEEEeccccc------chHHHHHHHHHHhCCC---CCcceeeeecCc----
Q psy6046          10 VG-GNRARSSCSRKPEKT------TKREVVQWKERNVSQ------GVVIVDEEQLLKLIKV---EPIEKYYSLDPE----   69 (379)
Q Consensus        10 ~l-G~G~fG~V~~a~~~~------tg~~~a~~k~~~~~~------~~~~~~E~~il~~l~h---pnIv~~~~~~~~----   69 (379)
                      .| +.|....+|+.....      ++..++ +|......      ...+.+|+.+|+.|..   ..+.+++.+..+    
T Consensus        27 ~l~~~G~~n~~y~v~~~~~~~~~~~~~~~v-lR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           27 GVDSTGMSSETIILTARWQQDGRSIQQKLV-ARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EECTTSSEEEEEEEEEEEEETTEEEEEEEE-EEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             ECCCCCccceEEEEEEecccCCCCCCceEE-EEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            56 788899999986431      144565 45544322      3568899999998863   235556665432    


Q ss_pred             --ceEEeeC
Q psy6046          70 --PLLGLNP   76 (379)
Q Consensus        70 --~~~v~e~   76 (379)
                        .+++||+
T Consensus       106 g~~~~v~e~  114 (357)
T 3ats_A          106 GTPFFLMDY  114 (357)
T ss_dssp             SSCEEEEEC
T ss_pred             CCceEEEEe
Confidence              5789999

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.65  E-value=0.055  Score=49.74  Aligned_cols=64  Identities=14%  Similarity=0.034  Sum_probs=45.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCC---CCcceeeeecC---cceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKV---EPIEKYYSLDP---EPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~h---pnIv~~~~~~~---~~~~v~e~   76 (379)
                      -|+.|....+|+...  ++..++ +|.........+.+|...|+.|..   ..+.+++.+..   ..+++||+
T Consensus        43 ~l~gG~~n~~y~v~~--~~~~~v-lK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~  112 (312)
T 3jr1_A           43 KLYSGEMNEIWLIND--EVQTVF-VKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEA  112 (312)
T ss_dssp             EECCSSSSEEEEEES--SSCEEE-EEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEEC
T ss_pred             EeCCccceeeeEEEE--CCCeEE-EEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEe
Confidence            578899999999873  455666 566555445678899999988852   34555655543   37899998

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.54  E-value=0.039  Score=50.52  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=26.1

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..+++|+|+.|.||+++.+   ..+.|+||+.+..
T Consensus       186 ~~~liHgDl~~~Nil~~~~---~~~~lIDf~~a~~  217 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGD---ELSGLIDFYFACN  217 (322)
T ss_dssp             CEEEECSCCCGGGEEEETT---EEEEECCCTTCEE
T ss_pred             CcccCCCCCCccCEEEeCC---ceEEEecchhccC
Confidence            3579999999999999863   4457999998754

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=94.96  E-value=0.023  Score=52.53  Aligned_cols=59  Identities=15%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             cccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         298 SLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       298 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ..++.+....+..+|..+|.+     |.|.++ .+++..++...+. +...++..++..++.+..+
T Consensus       114 ~~Ls~~e~~~l~~~F~~~D~d-----~dG~Is-~~El~~~L~~lg~~~~~~~i~~l~~~~D~d~~G  173 (323)
T 1ij5_A          114 PMLSEEDTNILRQLFLSSAVS-----GSGKFS-FQDLKQVLAKYADTIPEGPLKKLFVMVENDTKG  173 (323)
T ss_dssp             CCCCHHHHHHHHHHHTSSSST-----TSSCCC-HHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSS
T ss_pred             HhCCHHHHHHHHHHHHHHhCC-----CCCCCc-HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCC
Confidence            355667788889999999999     999999 7777777766433 3555677777777665533

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=94.37  E-value=0.19  Score=48.31  Aligned_cols=65  Identities=9%  Similarity=-0.062  Sum_probs=41.7

Q ss_pred             CcCCCCceEEEEEEEcC-------CCcEEEEEEecccccc-hHHHHHHHHHHhCCCCCc-ceeeeecCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKT-------TKREVVQWKERNVSQG-VVIVDEEQLLKLIKVEPI-EKYYSLDPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~-------tg~~~a~~k~~~~~~~-~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~v~e~   76 (379)
                      .|+.|....||++....       ++..++ +|+...... ..+.+|..+++.|...++ .++++.+.+ ..++|+
T Consensus        80 ~l~gG~tN~~y~v~~~~~~~~~~~~~~~~v-lRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~-g~v~e~  153 (429)
T 1nw1_A           80 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVL-LRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG-GRLEEY  153 (429)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEE-EEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT-EEEECC
T ss_pred             EeCCCcccceEEEEeCCCccccCCCCceEE-EEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC-CEEEEE
Confidence            56778889999998643       244555 565533223 567789999998874343 456665544 356666

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=94.04  E-value=0.22  Score=46.99  Aligned_cols=120  Identities=15%  Similarity=0.098  Sum_probs=69.4

Q ss_pred             CcCCCCceEEEEEEEcC-------CCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCC-cceeeeecCcceEEeeC-Cc
Q psy6046          10 VGGNRARSSCSRKPEKT-------TKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEP-IEKYYSLDPEPLLGLNP-RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~-------tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~v~e~-~g   78 (379)
                      .|.-|-...+|++....       +++.++ +|....  .....+.+|..+++.|.--. ..++++.+.+ ..++|+ .|
T Consensus        57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~v-lR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~-g~v~e~i~G  134 (379)
T 3feg_A           57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVL-LRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE-GRLEQYIPS  134 (379)
T ss_dssp             EC-----CCEEEEECCTTSCCCSSCCSEEE-EEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT-EEEEECCSE
T ss_pred             EcCCcccccEEEEEeCCCccccCCCCCeEE-EEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC-ccEEEEecC
Confidence            56668888899988542       245566 454432  23456779999998887322 3456666655 377788 22


Q ss_pred             hhhH-----------H--HHHHHHhcccC---------------------------------------------------
Q psy6046          79 PVYQ-----------A--SATTKAGSVLF---------------------------------------------------   94 (379)
Q Consensus        79 ~l~~-----------~--~al~~lh~~~~---------------------------------------------------   94 (379)
                      ....           .  ..+.-||++-.                                                   
T Consensus       135 ~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~  214 (379)
T 3feg_A          135 RPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLE  214 (379)
T ss_dssp             EECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHH
T ss_pred             ccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHh
Confidence            1111           1  33344443200                                                   


Q ss_pred             --CCCCCeEeCCCCCCcEEEeec-CCCCcEEEeeccccee
Q psy6046          95 --PPLMDFIFFFLQPQNLVMMGD-FPNCDIKVCDFEISRV  131 (379)
Q Consensus        95 --~h~~~ivHrDlkp~Nill~~~-~~~~~ikl~DFG~a~~  131 (379)
                        -....++|+|+.+.||+++.+ .+.+.+.++||..+..
T Consensus       215 ~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          215 STPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             TSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             hcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence              123459999999999999864 1125899999998864

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.02  E-value=0.2  Score=45.26  Aligned_cols=111  Identities=11%  Similarity=0.015  Sum_probs=67.1

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHhCCCCCc-ceeeeecCc-ceEEeeC--Cchhh--
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVS--QGVVIVDEEQLLKLIKVEPI-EKYYSLDPE-PLLGLNP--RPPVY--   81 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--~~~~~~~E~~il~~l~hpnI-v~~~~~~~~-~~~v~e~--~g~l~--   81 (379)
                      .|+.|....+|++      ..++ +|.....  ......+|+.+++.+..-.+ .+++....+ -++++|+  .|...  
T Consensus        25 ~l~gG~tN~~~~~------~~~v-lR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~~~~~v~e~i~~g~~l~~   97 (301)
T 3dxq_A           25 ERLGGLTNLVFRA------GDLC-LRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSP   97 (301)
T ss_dssp             EEESCSSEEEEEE------TTEE-EEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTTTCCEEEECCTTCEECCH
T ss_pred             EcCCcccccccee------eeEE-EECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECCCCEEEEeecCCCccCCH
Confidence            4677888999998      3344 3443321  12234678888887763232 355555543 5677777  23211  


Q ss_pred             ----------HH--HHHHHHhcccC-----------------------------------------------CCCCCeEe
Q psy6046          82 ----------QA--SATTKAGSVLF-----------------------------------------------PPLMDFIF  102 (379)
Q Consensus        82 ----------~~--~al~~lh~~~~-----------------------------------------------~h~~~ivH  102 (379)
                                ..  ..+.-+|++-.                                               .....++|
T Consensus        98 ~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l~H  177 (301)
T 3dxq_A           98 EKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACH  177 (301)
T ss_dssp             HHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEEEC
T ss_pred             hhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCceeec
Confidence                      11  44556665321                                               11234899


Q ss_pred             CCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046         103 FFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus       103 rDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +|+.|.||+.++    +.+.++||..+..
T Consensus       178 gDl~~~Nil~~~----~~~~lID~e~a~~  202 (301)
T 3dxq_A          178 CDPLCENFLDTG----ERMWIVDWEYSGM  202 (301)
T ss_dssp             SCCCGGGEEECS----SCEEECCCTTCEE
T ss_pred             cCCCcCCEEECC----CCEEEEecccccC
Confidence            999999999433    6789999998754

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=93.77  E-value=0.24  Score=47.99  Aligned_cols=65  Identities=6%  Similarity=-0.058  Sum_probs=39.6

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCc-ceeeeecCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPI-EKYYSLDPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~v~e~   76 (379)
                      .|+.|-...+|++....++..++ +|+.....  ...-.+|..+++.|...++ .++++.+.. ..++||
T Consensus       115 ~lsgG~tN~~y~v~~~~~~~~~v-LRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~-G~v~e~  182 (458)
T 2qg7_A          115 IINGGITNILIKVKDMSKQAKYL-IRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFTN-GRIEEF  182 (458)
T ss_dssp             EECC--CEEEEEEEETTTTEEEE-EEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEETT-EEEEEC
T ss_pred             EcCCCeEeEEEEEEECCCCceEE-EEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeCC-eEEEEe
Confidence            57778889999998654345566 55543321  1122689999999985554 456666644 347777

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=93.03  E-value=0.14  Score=37.86  Aligned_cols=56  Identities=7%  Similarity=0.052  Sum_probs=44.7

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .+....+.++|..+|.+     |.|.++ .+++...+...+ +...++.++++.++.++.+.+
T Consensus         6 ~~~~~~~~~~F~~~D~d-----~dG~I~-~~el~~~l~~~g-~~~~~~~~i~~~~D~d~dG~i   61 (95)
T 1c07_A            6 PAEKAKYDEIFLKTDKD-----MDGFVS-GLEVREIFLKTG-LPSTLLAHIWSLCDTKDCGKL   61 (95)
T ss_dssp             SHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHTTT-CCHHHHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHHHHHHhCCC-----CCCcEe-HHHHHHHHHHcC-CCHHHHHHHHHHHCCCCCCcC
Confidence            34556677999999999     999999 899998888764 477888999998887665443

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=92.74  E-value=0.23  Score=35.42  Aligned_cols=57  Identities=5%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             cchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-Cchhh---HHHHHHhcccCCCC
Q psy6046         300 VSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNIC---IDEIIKNINDNKGT  362 (379)
Q Consensus       300 ~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~---~~e~~~~~~~~~~~  362 (379)
                      ++.+....+...|..+|.+     |.|.++ ..++...+...+. +...+   +.++++.++.++.+
T Consensus         8 l~~~~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g   68 (86)
T 1j7q_A            8 LGPEEKDECMKIFDIFDRN-----AENIAP-VSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKN   68 (86)
T ss_dssp             CSSTHHHHHHHHHHHHSTT-----TTSCBC-HHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCC
T ss_pred             CCHHHHHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCC
Confidence            4556677788999999999     999999 9999999988654 56778   88999999866543

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=92.59  E-value=0.16  Score=36.24  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=41.2

Q ss_pred             cchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         300 VSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       300 ~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .+++....+...|..+|.+     |.|.++ .+++...+...+.....+++++++.++.++.+.
T Consensus         5 ~~~~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~   62 (86)
T 2opo_A            5 DTPQDIADRERIFKRFDTN-----GDGKIS-SSELGDALKTLGSVTPDEVRRMMAEIDTDGDGF   62 (86)
T ss_dssp             -CHHHHHHHHHHHHHHCTT-----CSSEEE-HHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSE
T ss_pred             CCHhhHHHHHHHHHHHCCC-----CCCCcC-HHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCc
Confidence            3455567778899999999     888888 777777777654445667777777776655443

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=92.39  E-value=0.15  Score=35.45  Aligned_cols=55  Identities=5%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .+....+..+|..+|.+     |.|.++ .+++..++...+. +...++.++++.++.++.+
T Consensus         3 ~~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g   58 (77)
T 2joj_A            3 EEQKQEIKEAFDLFDTN-----KTGSID-YHELKVAMRALGFDVKKPEILELMNEYDREGNG   58 (77)
T ss_dssp             HHHHHHHHHHHHHHCCS-----SSSEEE-HHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSS
T ss_pred             HHHHHHHHHHHHHhCCC-----CCCCCc-HHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCC
Confidence            45566778999999999     999999 8888888877643 4667788888888766544

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=92.08  E-value=0.17  Score=36.85  Aligned_cols=59  Identities=7%  Similarity=0.073  Sum_probs=47.8

Q ss_pred             cccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         298 SLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       298 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ..++.+....+..+|..+|.+     |.|.++ .+++...+...+ +...+++++++.++.++.+.
T Consensus        19 ~~l~~~~~~~l~~~F~~~D~d-----~~G~I~-~~El~~~l~~~g-~~~~~~~~~~~~~D~d~dg~   77 (91)
T 2pmy_A           19 ADGDGEELARLRSVFAACDAN-----RSGRLE-REEFRALCTELR-VRPADAEAVFQRLDADRDGA   77 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTT-----CSSSEE-HHHHHHHHHHTT-CCHHHHHHHHHHHCTTCSSE
T ss_pred             ccCCHHHHHHHHHHHHHHCCC-----CCCCCc-HHHHHHHHHHcC-cCHHHHHHHHHHhCCCCCCC
Confidence            455667777888999999999     999999 888888888765 47788899999888765443

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=92.08  E-value=0.25  Score=35.57  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .++.+....+...|..+|.+     |.|.++ .+++...+...+. +...+++++++.++.++.+.+
T Consensus        13 ~l~~~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i   73 (90)
T 1avs_A           13 FLSEEMIAEFKAAFDMFDAD-----GGGDIS-TKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI   73 (90)
T ss_dssp             HBCHHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSE
T ss_pred             hCCHHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeE
Confidence            34566677788999999999     999999 8888888887643 567788999998887665443

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=91.79  E-value=0.19  Score=36.80  Aligned_cols=54  Identities=6%  Similarity=0.027  Sum_probs=39.3

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGT  362 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  362 (379)
                      .+....+.++|..+|.+     |.|.++ .+++...+...+ +...++.++++.++.++.+
T Consensus         5 ~~~~~~~~~~F~~~D~d-----~dG~I~-~~el~~~l~~~g-~~~~~~~~i~~~~D~d~dG   58 (92)
T 1fi6_A            5 DEQRQYYVNQFKTIQPD-----LNGFIP-GSAAKEFFTKSK-LPILELSHIWELSDFDKDG   58 (92)
T ss_dssp             HHHHHHHHHHHTTTCCS-----TTCEEE-HHHHHHHHHHHS-SCHHHHHHHHHHHCTTCSS
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHcC-CCHHHHHHHHHHHCCCCCC
Confidence            34556677899999999     899888 777777776653 3566777777777655544

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=91.57  E-value=0.3  Score=35.80  Aligned_cols=54  Identities=13%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ..+.+.++|..+|.+     |.|.++ .+++...+..... +...+++++++.++.++.+.
T Consensus        27 ~~~~l~~~F~~~D~d-----~~G~I~-~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~   81 (94)
T 2kz2_A           27 SEEEIREAFRVEDKD-----GNGYIS-AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ   81 (94)
T ss_dssp             CHHHHHHHHHHHCTT-----CCSCBC-HHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHHCCC-----CcCcCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence            445567899999999     999999 8888888877653 57778899999888766443

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=91.53  E-value=0.077  Score=50.73  Aligned_cols=32  Identities=22%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             CCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +...++|+|++|.||+++.+   + ++++||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~~---~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQD---S-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSS---C-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeCC---C-CEEEeCccccc
Confidence            35679999999999999874   3 99999998854

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=91.28  E-value=0.25  Score=37.72  Aligned_cols=56  Identities=5%  Similarity=-0.000  Sum_probs=40.5

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +.+....+.++|..+|.+     |.|.++ .+++...+... ++...++.++++.++.++.+.
T Consensus         9 s~~~~~~l~~~F~~~D~d-----~dG~I~-~~El~~~l~~~-~~~~~~~~~i~~~~D~d~dG~   64 (111)
T 2kgr_A            9 PQSSRLKYRQLFNSHDKT-----MSGHLT-GPQARTILMQS-SLPQAQLASIWNLSDIDQDGK   64 (111)
T ss_dssp             CHHHHHHHHHHHHTTSCS-----SCCEEE-HHHHHHHHHTT-CCCHHHHHHHHHHHCSSCCSE
T ss_pred             CHHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHhC-CCCHHHHHHHHHHHCCCCCCC
Confidence            445567778999999999     999998 88887777732 246667777777776655443

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=90.96  E-value=0.29  Score=33.16  Aligned_cols=53  Identities=9%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ....+...|..+|.+     |.|.++ .+++...+...+. +...+++++++.++.++.+
T Consensus         4 ~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g   57 (71)
T 2b1u_A            4 GLEDLQVAFRAFDQD-----GDGHIT-VDELRRAMAGLGQPLPQEELDAMIREADVDQDG   57 (71)
T ss_dssp             THHHHHHHHTTSCCS-----SSSEEE-HHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSS
T ss_pred             cHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence            345567899999999     999999 9999999988653 5778899999999866544

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=90.90  E-value=0.27  Score=34.66  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             hhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc--c-CchhhHHH----HHHhcccCCCCCCc
Q psy6046         303 TREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK--D-INNICIDE----IIKNINDNKGTWPS  365 (379)
Q Consensus       303 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-~~~~~~~e----~~~~~~~~~~~~~~  365 (379)
                      +....+...|..+|.+     |.|.++ .+++...+...+  . +...++.+    +++.++.++.+.++
T Consensus         4 ~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~   67 (83)
T 1yx7_A            4 KVKAELEAAFKKLDAN-----GDGYVT-ALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKIS   67 (83)
T ss_dssp             CSCTHHHHHHHHHSSS-----CSSSCS-HHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCS
T ss_pred             cHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            3445567999999999     999999 899988888765  2 56778888    88888876655543

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=90.76  E-value=0.37  Score=34.69  Aligned_cols=55  Identities=11%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             hhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         303 TREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       303 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +....+..+|..+|.+     |.|.++ .+++...+..... +...++.++++.++.++.+.
T Consensus         6 ~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~   61 (92)
T 2kn2_A            6 DAEEELKEAFKVFDKD-----QNGYIS-ASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ   61 (92)
T ss_dssp             HHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSS
T ss_pred             cHHHHHHHHHHHHCCC-----CCCeEc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence            4456677899999999     888888 7777777776543 45667777777777555443

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=90.36  E-value=0.54  Score=35.13  Aligned_cols=55  Identities=5%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .+....+...|..+|.+     |.|.++ ..++...+...+. +...++.++++.++.++.+
T Consensus        28 ~~~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg   83 (107)
T 2d58_A           28 PSKLEGFKEKYMEFDLN-----GNGDID-IMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGE   83 (107)
T ss_dssp             HHHHHHHHHHHTTSCCC-----TTSCEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSS
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence            66777888999999999     999999 8888888877643 5677788888888766544

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=89.99  E-value=0.33  Score=32.36  Aligned_cols=50  Identities=10%  Similarity=-0.001  Sum_probs=38.8

Q ss_pred             HhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         308 LGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       308 ~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +..+|..+|.+     |.|.++ .+++...+..... +...++.++++.++.++.+.
T Consensus         3 l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~   53 (67)
T 1tiz_A            3 AKRVFEKFDKN-----KDGKLS-LDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGE   53 (67)
T ss_dssp             HHHHHHHHCTT-----SSSCEE-HHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSE
T ss_pred             HHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCc
Confidence            45788999999     999998 8888888877543 56778888888887665443

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=89.99  E-value=0.33  Score=39.22  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=44.2

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      ...+.++|..+|.+     |.|.++ .+++..++...+. +...+++++++.++.+.|
T Consensus        84 ~~~l~~aF~~fD~d-----~~G~I~-~~el~~~l~~~g~~ls~~ei~~~~~~~D~~dG  135 (153)
T 3i5g_B           84 EDALRNAFSMFDED-----GQGFIP-EDYLKDLLENMGDNFSKEEIKNVWKDAPLKNK  135 (153)
T ss_dssp             HHHHHHHHHTTCSS-----CSSCCC-HHHHHHHHHSSSSCCCHHHHHHHHTTCCEETT
T ss_pred             HHHHHHHHhccccC-----CCCeEe-HHHHHHHHHHcCCcCCHHHHHHHHHHhCCCcC
Confidence            45677999999999     999999 9999999988765 788899999999987754

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=89.69  E-value=0.72  Score=35.32  Aligned_cols=54  Identities=13%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHh-----cc-cCchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKS-----MK-DINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~-----~~-~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+.++|..+| .+     |.+ .++ .+++..++..     .. .....+++++++.+|.|+.+.
T Consensus        20 ~~~~l~~aF~~fD~~d-----gdGG~Is-~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~   81 (113)
T 2lnk_A           20 ALDVMVSTFHKYSGKE-----GDKFKLN-KSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE   81 (113)
T ss_dssp             HHHHHHHHHHHTTTTT-----SCTTCBC-HHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSC
T ss_pred             HHHHHHHHHHHHcccC-----CCCCEEC-HHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCc
Confidence            3455667788887 67     765 777 7777777754     11 124556777777777665443

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=89.49  E-value=0.39  Score=33.36  Aligned_cols=52  Identities=8%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .+...|..+|.+     |.|.++ .+++...+...+.+...+++++++.++.++.+.+
T Consensus         4 ~l~~~F~~~D~~-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i   55 (78)
T 1k9u_A            4 DMERIFKRFDTN-----GDGKIS-LSELTDALRTLGSTSADEVQRMMAEIDTDGDGFI   55 (78)
T ss_dssp             HHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeE
Confidence            456889999999     899888 7777777766544466778888888876654443

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=89.46  E-value=0.6  Score=34.67  Aligned_cols=52  Identities=4%  Similarity=0.007  Sum_probs=40.0

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ...+.++|..+|.+     |.|.++ .+++...+...+ +...++.++++.++.++.+.
T Consensus        10 ~~~~~~~F~~~D~d-----~dG~Is-~~el~~~l~~~~-l~~~~l~~i~~~~D~d~dG~   61 (99)
T 1qjt_A           10 NPVYEKYYRQVEAG-----NTGRVL-ALDAAAFLKKSG-LPDLILGKIWDLADTDGKGV   61 (99)
T ss_dssp             CTHHHHHHHHHCCT-----TSSCCC-SHHHHHHHHTSS-SCHHHHHHHHHHHCCSSSSS
T ss_pred             HHHHHHHHHHHCCC-----CCCcCC-HHHHHHHHHHcC-CCHHHHHHHHHHHCCCCCCc
Confidence            34566899999999     999999 888888887754 46778888888887655443

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=89.39  E-value=0.64  Score=34.41  Aligned_cols=51  Identities=8%  Similarity=0.087  Sum_probs=36.1

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ..+..+|..+|.+     |.|.++ ..++...+..... +...+++++++.++.++.+
T Consensus        24 ~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g   75 (105)
T 1wlz_A           24 HAITQEFENFDTM-----KTNTIS-REEFRAICNRRVQILTDEQFDRLWNEMPVNAKG   75 (105)
T ss_dssp             HHHHHHHHHHCTT-----CSSCBC-HHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTS
T ss_pred             HHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCC
Confidence            4455788888888     888888 7777777766543 5666777777777754433

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=89.28  E-value=0.41  Score=35.92  Aligned_cols=52  Identities=13%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             hhHHhHHhhhcc-ccchhhcCC-cccCChHHHHHHHHh-c----c-cCchhhHHHHHHhcccCCCC
Q psy6046         305 EKSLGDMAISLG-RSKEKLYGF-KCLSKSQEVLNLYKS-M----K-DINNICIDEIIKNINDNKGT  362 (379)
Q Consensus       305 ~~~~~~~f~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~-~----~-~~~~~~~~e~~~~~~~~~~~  362 (379)
                      ...+.++|..+| ++     |. |.++ .+|+...+.. .    . .....+++++++.+|.|..+
T Consensus         9 i~~l~~aF~~fd~~d-----g~~G~Is-~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG   68 (101)
T 3nso_A            9 VAAIVCTFQEYAGRC-----GDKYKLC-QAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDC   68 (101)
T ss_dssp             HHHHHHHHHHHHTTS-----SCTTEEC-HHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHhhcC-----CCCCEEC-HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCC
Confidence            344456666665 55     54 5666 5555555553 1    1 12344555555555554433

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=89.25  E-value=0.31  Score=37.14  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=38.4

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKG  361 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  361 (379)
                      .++.+....+.++|..+|.+     |.|.++ .+++...+...+ +...++.++++.++.++.
T Consensus        15 ~ls~~~~~~~~~~F~~~D~d-----~dG~Is-~~el~~~l~~~g-l~~~el~~i~~~~D~d~d   70 (110)
T 1iq3_A           15 RITEEQREYYVNQFRSLQPD-----PSSFIS-GSVAKNFFTKSK-LSIPELSYIWELSDADCD   70 (110)
T ss_dssp             CCSSSSHHHHHHHHHHHCCS-----SSSEEE-HHHHHHHCCSSS-CSSCCHHHHHHHHCSSSC
T ss_pred             cCCHHHHHHHHHHHHHHCCC-----CCCeEc-HHHHHHHHHHcC-CCHHHHHHHHHHHcCCCC
Confidence            34556677788999999999     888888 666666665543 345566666666665443

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=89.16  E-value=0.56  Score=38.75  Aligned_cols=51  Identities=18%  Similarity=0.408  Sum_probs=39.5

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      .+.+...|..+|.+     |.|.++ .+++..++..... +...+++++++.++|+.|
T Consensus        83 ~~~l~~aF~~fD~d-----~~G~I~-~~el~~~l~~~g~~~~~~ei~~l~~~~dd~dG  134 (176)
T 2lhi_A           83 EQELLEAFKVFDKN-----GDGLIS-AAELKHVLTSIGEKLTDAEVDDMLREVSDGSG  134 (176)
T ss_dssp             HHHHHHHHHHHCSS-----CSSSBC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHcCcccchHHHHHHHHhhcCCCC
Confidence            34566889999999     999999 8888888877655 567788888888875444

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=89.15  E-value=0.74  Score=38.38  Aligned_cols=31  Identities=10%  Similarity=0.116  Sum_probs=16.6

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHH
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLY  338 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~  338 (379)
                      .+....+.++|..+|.+     |.|.++ .+++..++
T Consensus        48 ~~~~~~l~~~F~~~D~d-----~~G~i~-~~El~~~l   78 (191)
T 3k21_A           48 DYDVEKLKSTFLVLDED-----GKGYIT-KEQLKKGL   78 (191)
T ss_dssp             CHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCc-HHHHHHHH
Confidence            33444555666666666     666665 44433333

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=89.11  E-value=0.66  Score=38.33  Aligned_cols=60  Identities=8%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .++++.+..+.++|..+|.+     |.|.++ .+++..++....- +...++.+++..++.+..+.+
T Consensus         4 ~Lt~eqi~elk~~F~~~D~d-----~dG~I~-~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i   64 (176)
T 2lhi_A            4 NLTEEQIAEFKEAFALFDKD-----NNGSIS-SSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQI   64 (176)
T ss_dssp             CCCTTGGGHHHHHHHTTCSS-----CSSCBC-HHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSB
T ss_pred             cCCHHHHHHHHHHHHHHCCC-----CCCCCC-HHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccc
Confidence            45566677788999999999     999999 8999888887644 566778888888877665443

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=88.65  E-value=0.34  Score=34.48  Aligned_cols=52  Identities=10%  Similarity=0.110  Sum_probs=42.4

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ..+.+.|..+|.+     |.|.++ ..++..++...+. +...+++++++.++.++.+.
T Consensus        23 ~~~~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~   75 (87)
T 1s6j_A           23 GGLKELFKMIDTD-----NSGTIT-FDELKDGLKRVGSELMESEIKDLMDAADIDKSGT   75 (87)
T ss_dssp             TTTTTHHHHHCTT-----CSSCEE-HHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSE
T ss_pred             HHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence            3455899999999     999999 9999999988654 57788999999998665443

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=88.16  E-value=0.9  Score=35.65  Aligned_cols=54  Identities=9%  Similarity=0.081  Sum_probs=43.0

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCCc
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWPS  365 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~  365 (379)
                      ..+.+.|..+|.+     |.|.++ .+++...+..... +...+++++++.++.++.+.++
T Consensus        79 ~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~  133 (143)
T 2obh_A           79 EEILKAFKLFDDD-----ETGKIS-FKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVS  133 (143)
T ss_dssp             HHHHHHHHHHCTT-----CSSSBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBC
T ss_pred             HHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEe
Confidence            3455889999999     999999 9999998887653 5778899999999877665543

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=87.75  E-value=0.65  Score=33.42  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=35.7

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHh-----ccc-CchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKS-----MKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~-----~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+..+|..+| .+     |.| .++ ..++...+..     .+. +...+++++++.++.++.+.
T Consensus         7 ~~~~l~~~F~~~D~~d-----~~G~~I~-~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~   68 (93)
T 1k2h_A            7 AMETLINVFHAHSGKE-----GDKYKLS-KKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE   68 (93)
T ss_dssp             HHHHHHHHHHHHHTTS-----SCCSSCC-HHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSC
T ss_pred             HHHHHHHHHHHHcccC-----CCcCccC-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence            3455667888888 68     777 777 7777777664     322 45667777777777555443

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=87.66  E-value=0.44  Score=33.37  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             hhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc-c-CchhhHHHHHHhcccCCCC
Q psy6046         303 TREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK-D-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       303 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .....+. +|..+|.+     |.|.++ ..++..++...+ . +...++.++++.++.++.+
T Consensus         6 ~~~~~l~-~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg   60 (81)
T 1c7v_A            6 DEEEILR-AFKVFDAN-----GDGVID-FDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNG   60 (81)
T ss_dssp             -CHHHHH-HHHHHSCS-----GGGEEC-HHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGG
T ss_pred             cHHHHHH-HHHHHCCC-----CCCcCC-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCC
Confidence            3456677 88888888     888888 777777777664 2 4566777777777655433

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=87.56  E-value=0.6  Score=37.07  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      +.+..+|..+|.+     |.|.++ .+++..++...+. +...+++++++.++.|+.+-+
T Consensus        83 ~~l~~aF~~~D~d-----~~G~I~-~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I  136 (148)
T 2lmt_A           83 EEMREAFKIFDRD-----GDGFIS-PAELRFVMINLGEKVTDEEIDEMIREADFDGDGMI  136 (148)
T ss_dssp             HHHHHHHHHHHSS-----CSSEEC-HHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSE
T ss_pred             HHHHHHHHHHCCC-----CcCcCc-HHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeE
Confidence            3456889999999     999999 8888888877654 567788888888887765543

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=87.53  E-value=1.1  Score=32.60  Aligned_cols=35  Identities=14%  Similarity=0.361  Sum_probs=16.3

Q ss_pred             ccCChHHHHHHHHh-----ccc-CchhhHHHHHHhcccCCCC
Q psy6046         327 CLSKSQEVLNLYKS-----MKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       327 ~~~~~~~~~~~~~~-----~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .++ .+++...+..     ... ....+++++++.++.|+.+
T Consensus        27 ~Is-~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG   67 (92)
T 3rm1_A           27 KLK-KSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDG   67 (92)
T ss_dssp             SBC-HHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSS
T ss_pred             eEC-HHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCC
Confidence            555 5555555544     221 2344555555555544433

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=87.25  E-value=0.41  Score=31.85  Aligned_cols=50  Identities=16%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             hHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         309 GDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       309 ~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ..+|..+|.+     |.|.++ .+++...+..... ....++.++++.++.++.+.+
T Consensus         3 ~~~F~~~D~d-----~~G~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i   53 (66)
T 3li6_A            3 EALFKEIDVN-----GDGAVS-YEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEI   53 (66)
T ss_dssp             CHHHHHHCTT-----CSSSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSC
T ss_pred             HHHHHHHCCC-----CCCccc-HHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCC
Confidence            4688899999     999998 7777777766432 355677778888776665544

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=87.16  E-value=0.61  Score=31.96  Aligned_cols=52  Identities=13%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             hhHHhHHhhhc-cccchhhcCC-cccCChHHHHHHHHhccc-C--chhhHHHHHHhcccCCCC
Q psy6046         305 EKSLGDMAISL-GRSKEKLYGF-KCLSKSQEVLNLYKSMKD-I--NNICIDEIIKNINDNKGT  362 (379)
Q Consensus       305 ~~~~~~~f~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~~~~~~~~~  362 (379)
                      ...+..+|..+ |.+     |. |.++ ..++...+...+. +  ...+++++++.++.+..+
T Consensus         4 ~~~l~~~F~~~~D~d-----~~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g   60 (76)
T 1qx2_A            4 PEEIKGAFEVFAAKE-----GDPNQIS-KEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDG   60 (76)
T ss_dssp             HHHHHHHHHHHHTSS-----SCTTSEE-HHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSS
T ss_pred             HHHHHHHHHHHcccC-----CCcCeEC-HHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCC
Confidence            34566888888 888     88 8888 8888887777543 4  566788888888765543

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=87.03  E-value=0.85  Score=36.95  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcc
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNIN  357 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~  357 (379)
                      ..+.++|..+|.+     |.|.++ .+++..++...+. +...+++++++.++
T Consensus        85 ~~l~~aF~~fD~d-----~~G~I~-~~el~~~l~~~g~~ls~~e~~~l~~~~D  131 (159)
T 3i5g_C           85 DEFMEAFKTFDRE-----GQGLIS-SAEIRNVLKMLGERITEDQCNDIFTFCD  131 (159)
T ss_dssp             HHHHHHHHHHCTT-----SSSEEC-HHHHHHHHHHSSSCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence            3456889999999     999999 9999999887655 67888999999887

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=86.93  E-value=0.73  Score=33.44  Aligned_cols=54  Identities=15%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             hhhHHhHHhhhccc-cchhhcCCc-ccCChHHHHHHH-Hhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLGR-SKEKLYGFK-CLSKSQEVLNLY-KSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~~-~~~~~~g~~-~~~~~~~~~~~~-~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+...|..+|. +     |.| .++ .+++...+ ..... +...+++++++.++.|+.+.
T Consensus         8 ~~~~l~~~F~~~D~~d-----~dG~~I~-~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~   65 (93)
T 1xk4_A            8 ALNSIIDVYHKYSLIK-----GNFHAVY-RDDLKKLLETESPQYIRKKGADVWFKELDINTDGA   65 (93)
T ss_dssp             HHHHHHHHHHHHHTSS-----SCTTCBC-HHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHHhhcC-----CCcCeEC-HHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCC
Confidence            34456678888888 8     888 887 77777777 43322 23456677777777655443

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=86.89  E-value=1.3  Score=34.70  Aligned_cols=53  Identities=4%  Similarity=-0.066  Sum_probs=37.0

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc--cCchhhHHHHHHhcccCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK--DINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ...+..+|..+|.+     |.|.++ .+++..++....  .+...+++++++.++.+..+.
T Consensus        39 ~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~   93 (135)
T 3h4s_E           39 VSELCKGFSLLADP-----ERHLIT-AESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGA   93 (135)
T ss_dssp             HHHHHHHHHHHSBT-----TTTBBC-HHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSS
T ss_pred             HHHHHHHHHHHCCC-----CCCcCC-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            34556788888888     888888 777777777655  356667777777777555443

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=86.59  E-value=1  Score=42.90  Aligned_cols=60  Identities=7%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             cccccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         296 QMSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       296 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      ....++++.+..+.++|..+|.+     |.|.++ .+|+..++....- +...+++++++.+|.++.
T Consensus       292 s~E~Lt~EEI~ELREaF~~fDkD-----gdG~IS-~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgD  352 (440)
T 3u0k_A          292 TRDQLTEEQIAEFKEAFSLFDKD-----GDGTIT-TKELGTVMRSLGQNPTEAELQDMINEVDADGD  352 (440)
T ss_dssp             BCBCCCHHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCS
T ss_pred             hHhhhhHHHHHHHHHHHHHHcCC-----CCCEEC-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCC
Confidence            34577888889999999999999     999998 6666666665432 345556666666655543

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=86.41  E-value=0.48  Score=39.84  Aligned_cols=32  Identities=31%  Similarity=0.329  Sum_probs=19.1

Q ss_pred             hhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHh
Q psy6046         303 TREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKS  340 (379)
Q Consensus       303 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~  340 (379)
                      +....+.++|..+|.+     |.|.++ .+++..++..
T Consensus        54 ~e~~~l~~~F~~~D~d-----~~G~Is-~~El~~~l~~   85 (197)
T 3pm8_A           54 VEINNLRNIFIALDVD-----NSGTLS-SQEILDGLKK   85 (197)
T ss_dssp             HHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-----CCCcCC-HHHHHHHHHH
Confidence            3344555777777777     666666 5555554443

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=85.90  E-value=0.99  Score=33.43  Aligned_cols=55  Identities=2%  Similarity=0.037  Sum_probs=43.3

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc---c-CchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK---D-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ....+..+|..+|.+     |.|.++ .+++...+....   . +...+++++++.++.++.+.+
T Consensus        39 ~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i   97 (108)
T 2pvb_A           39 SLDDVKKAFYVIDQD-----KSGFIE-EDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMI   97 (108)
T ss_dssp             CHHHHHHHHHHHCTT-----CSSSBC-HHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHHHHHHCCC-----CCCcCC-HHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcE
Confidence            345567899999999     999999 999999888762   2 577889999999987665443

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=85.68  E-value=1.5  Score=34.40  Aligned_cols=51  Identities=16%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .+...|..+|.+     |.|.++ .+++...+..... +...+++++++.++.++.+.
T Consensus        84 ~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~  135 (148)
T 1exr_A           84 ELIEAFKVFDRD-----GNGLIS-AAELRHVMTNLGEKLTDDEVDEMIREADIDGDGH  135 (148)
T ss_dssp             HHHHHHHHHSTT-----CSSCBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSS
T ss_pred             HHHHHHHHhCCC-----CCCcCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence            345789999999     999999 8888888877654 56778889998888665444

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=85.66  E-value=1.2  Score=33.04  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             hhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHhc-----c-cCchhhHHHHHHhcccCCCC
Q psy6046         305 EKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKSM-----K-DINNICIDEIIKNINDNKGT  362 (379)
Q Consensus       305 ~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~-----~-~~~~~~~~e~~~~~~~~~~~  362 (379)
                      ...+.++|..+| .+     |.| .++ .+++..++...     . .....+++++++.++.|+.+
T Consensus         9 ~~~l~~~F~~fDd~d-----g~gG~I~-~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG   68 (99)
T 2y5i_A            9 MDALITVFHNYSGSE-----GDKYKLS-KGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDN   68 (99)
T ss_dssp             HHHHHHHHHHHHTSS-----SSTTEEC-HHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSS
T ss_pred             HHHHHHHHHHHhccC-----CCcCcCC-HHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCC
Confidence            444556777775 66     665 676 66666666541     1 12445666666666655433

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=85.45  E-value=0.38  Score=44.08  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=28.1

Q ss_pred             CCCCeEeCCCCCCcEEEeecCC-CCcEEEeeccccee
Q psy6046          96 PLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISRV  131 (379)
Q Consensus        96 h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~~  131 (379)
                      +...++|+|+.|.||+++.+.+ ...+.|+||+.+..
T Consensus       181 ~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          181 GDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             SCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3567999999999999986311 14789999998864

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=85.43  E-value=1.5  Score=32.04  Aligned_cols=54  Identities=11%  Similarity=0.182  Sum_probs=30.2

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCC-cccCChHHHHHHHHh-ccc-----CchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGF-KCLSKSQEVLNLYKS-MKD-----INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~-~~~-----~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+.++|..++ ++     |+ |.++ .+|+...+.. ..+     ....+++++++.+|.|+.+-
T Consensus         8 ~~~~l~~~F~~fd~~d-----g~~G~Is-~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~   69 (93)
T 4eto_A            8 ALDVMVSTFHKYSGKE-----GDKFKLN-KSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE   69 (93)
T ss_dssp             HHHHHHHHHHHHHTSS-----SSTTSBC-HHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSS
T ss_pred             HHHHHHHHHHHHcccC-----CCCCeEC-HHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCC
Confidence            3444556677775 45     53 5666 6666666654 211     13456666666666655443

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=85.39  E-value=1.4  Score=35.13  Aligned_cols=55  Identities=2%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ......+..+|..+|.+     |.|.++ ..++..++..... +...+++++++.++.++.+
T Consensus        46 ~~~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg  101 (150)
T 2jjz_A           46 PEKLTAFKEKYMEFDLN-----NEGEID-LMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSD  101 (150)
T ss_dssp             HHHHHHHHHHHTTSCCC-----TTSSBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHHhCCC-----CcCcCC-HHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCC
Confidence            56677788999999999     999998 7777777776543 4566777777777655543

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=85.33  E-value=1.1  Score=32.75  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=26.7

Q ss_pred             hhHHhHHhhhcc-ccchhhcC-CcccCChHHHHHHHHhc-----c-cCchhhHHHHHHhcccCCC
Q psy6046         305 EKSLGDMAISLG-RSKEKLYG-FKCLSKSQEVLNLYKSM-----K-DINNICIDEIIKNINDNKG  361 (379)
Q Consensus       305 ~~~~~~~f~~~~-~~~~~~~g-~~~~~~~~~~~~~~~~~-----~-~~~~~~~~e~~~~~~~~~~  361 (379)
                      ...+.++|..+| .+     | .|.++ .+++..++...     . .....+++++++.++.++.
T Consensus         8 ~~~l~~~F~~fD~~d-----gd~G~I~-~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~d   66 (95)
T 1j55_A            8 MGMIIDVFSRYSGSE-----GSTQTLT-KGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGD   66 (95)
T ss_dssp             HHHHHHHHHHHTTSS-----SCTTEEC-HHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHhccC-----CCCCcCC-HHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCC
Confidence            344556677777 56     6 35666 66666666531     1 1234456666666655443

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=85.29  E-value=0.88  Score=33.07  Aligned_cols=49  Identities=24%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             hHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHhc---ccCchhhHHHHHHhcccCC
Q psy6046         306 KSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKSM---KDINNICIDEIIKNINDNK  360 (379)
Q Consensus       306 ~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~  360 (379)
                      ..+.+.|..+| ++     |.| .++ .+++...+...   ..+...+++++++.++.|+
T Consensus        10 ~~l~~~F~~~D~~d-----~dG~~I~-~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~   63 (92)
T 2kax_A           10 TTMVTTFHKYSGRE-----GSKLTLS-RKELKELIKKELCLGEMKESSIDDLMKSLDKNS   63 (92)
T ss_dssp             HHHHHHHHHHHTTS-----SCSSEEE-HHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhhC-----CCCCeeC-HHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Confidence            33445555555 55     555 555 45554444431   0123344455555444433

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=85.13  E-value=0.71  Score=32.89  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             hhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHh---ccc-CchhhHHHHHHhcccCCCC
Q psy6046         305 EKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKS---MKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       305 ~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~---~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ...+...|..+| ++     |.| .++ .+++...+..   ... +...+++++++.++.++.+
T Consensus         9 ~~~l~~~F~~~D~~d-----~~G~~i~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg   66 (90)
T 1k8u_A            9 IGLLVAIFHKYSGRE-----GDKHTLS-KKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQ   66 (90)
T ss_dssp             HHHHHHHHHHHHTSS-----SCTTEEE-HHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhccC-----CCCCcCC-HHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCC
Confidence            445567777888 47     777 777 7777777764   332 3556677777777655433

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=84.90  E-value=1.1  Score=33.31  Aligned_cols=55  Identities=5%  Similarity=0.026  Sum_probs=42.8

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc---c-CchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK---D-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ....+..+|..+|.+     |.|.++ ..++...+....   . +...+++++++.++.+..+.+
T Consensus        40 ~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i   98 (109)
T 3fs7_A           40 TPDQIKKVFGILDQD-----KSGFIE-EEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKI   98 (109)
T ss_dssp             CHHHHHHHHHHHSTT-----CSSSBC-HHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSB
T ss_pred             cHHHHHHHHHHHCCC-----CCCeEe-HHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcC
Confidence            345567899999999     999999 889988888762   2 577788899988887665543

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=84.39  E-value=0.41  Score=44.62  Aligned_cols=65  Identities=8%  Similarity=-0.168  Sum_probs=36.4

Q ss_pred             CcCCCCceEEEEEEEcCC--------CcEEEEEEeccccc--chHHHHHHHHHHhCCCCCc-ceeeeecCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTT--------KREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPI-EKYYSLDPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~t--------g~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~v~e~   76 (379)
                      .|+.|....||++.....        +..++ +|+.....  ......|..+++.|....+ .+++.... -+.++|+
T Consensus        40 ~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~v-lRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~~-~~~v~e~  115 (369)
T 3c5i_A           40 QILSGLTNQLFEVGLKEETANNYNSIRTRVL-FRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTFN-GGRIEEW  115 (369)
T ss_dssp             EC----CCEEEEEEECHHHHTTCTTSCCEEE-EEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEET-TEEEEEC
T ss_pred             EeCCcccceEEEEEeCCCCcccccCCCceEE-EEecCCCccceecHHHHHHHHHHHHhcCCCCceEEecC-CcEEEEE
Confidence            577788889999875431        24555 56654321  1234688888888863333 35555543 4677888

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=84.35  E-value=1.2  Score=32.98  Aligned_cols=55  Identities=9%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc----cCchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK----DINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ....+..+|..+|.+     |.|.++ .+++...+....    .+...+++++++.++.++.+.+
T Consensus        40 ~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i   98 (110)
T 1pva_A           40 SANDVKKVFKAIDAD-----ASGFIE-EEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKI   98 (110)
T ss_dssp             CHHHHHHHHHHHCTT-----CSSSBC-HHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSB
T ss_pred             hHHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeE
Confidence            345667999999999     999999 999999988762    2577889999999987654443

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=84.03  E-value=2  Score=32.17  Aligned_cols=53  Identities=11%  Similarity=0.213  Sum_probs=27.3

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCC-cccCChHHHHHHHHh-ccc-----CchhhHHHHHHhcccCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGF-KCLSKSQEVLNLYKS-MKD-----INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~-~~~-----~~~~~~~e~~~~~~~~~~~  362 (379)
                      ....+..+|..+| .+     |+ |.++ .+|+...+.. ...     ....+++++++.+|.|..+
T Consensus        11 ~~~~l~~aF~~fD~~d-----gd~G~Is-~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG   71 (104)
T 3zwh_A           11 ALDVMVSTFHKYSGKE-----GDKFKLN-KSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDN   71 (104)
T ss_dssp             HHHHHHHHHHHHHTSS-----SSTTSBC-HHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSS
T ss_pred             HHHHHHHHHHHHhccC-----CCCCeEC-HHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCC
Confidence            3444556666665 45     53 4566 6666655553 211     1344556666665555443

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=83.95  E-value=1.3  Score=35.32  Aligned_cols=55  Identities=4%  Similarity=0.132  Sum_probs=40.5

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .+....+...|..+|.+     |.|.++ ..++..++..... +...+++++++.++.++.+
T Consensus        44 ~~~~~~l~~~F~~~D~d-----~dG~I~-~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg   99 (147)
T 1wy9_A           44 PSKLEAFKVKYMEFDLN-----GNGDID-IMSLKRMLEKLGVPKTHLELKRLIREVSSGSEE   99 (147)
T ss_dssp             HHHHHHHHHHHTTSCCC-----TTSSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTT
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence            56677788999999999     888888 7777777776543 4566777777777655543

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=83.88  E-value=1.1  Score=33.15  Aligned_cols=54  Identities=7%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhc---cc-CchhhHHHHHHhcccCCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSM---KD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ...+..+|..+|.+     |.|.++ ..++...+...   .. +...+++++++.++.++.+-+
T Consensus        40 ~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i   97 (109)
T 5pal_A           40 DAQVKEVFEILDKD-----QSGFIE-EEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKI   97 (109)
T ss_dssp             HHHHHHHHHHHCTT-----CSSEEC-HHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcC
Confidence            45567899999999     999999 88888888875   22 577788999998887665443

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=83.65  E-value=1.7  Score=31.54  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHh-cc-----cCchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKS-MK-----DINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~-~~-----~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ....+...|..++ .+     |.| .++ ..++...+.. ..     .+...+++++++.++.|+.+.+
T Consensus        11 ~~~~l~~~F~~~Dd~d-----~~G~~I~-~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I   73 (99)
T 1qls_A           11 CIESLIAIFQKHAGRD-----GNNTKIS-KTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQL   73 (99)
T ss_dssp             HHHHHHHHHHHHHTTS-----SCTTCBC-HHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHHHHHHHhcC-----CCcCeeC-HHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcC
Confidence            3455667888887 88     888 888 7777777763 21     2356677888888776655443

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=83.46  E-value=1.3  Score=32.79  Aligned_cols=54  Identities=7%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhc---c-cCchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSM---K-DINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~-~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+..+|..+|.+     |.|.++ ..++...+...   . .+...+++++++.++.+..+.
T Consensus        39 ~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~   96 (109)
T 1rwy_A           39 SADDVKKVFHILDKD-----KSGFIE-EDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGK   96 (109)
T ss_dssp             CHHHHHHHHHHHSTT-----CSSEEC-HHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSS
T ss_pred             hHHHHHHHHHHHCCC-----CCCeEc-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCc
Confidence            345567899999999     999999 89998888876   2 257788999999988765443

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=83.25  E-value=1.1  Score=33.21  Aligned_cols=54  Identities=4%  Similarity=0.067  Sum_probs=42.3

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc---c-CchhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK---D-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+..+|..+|.+     |.|.++ .+++...+....   . +...+++++++.++.++.+.
T Consensus        40 ~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~   97 (109)
T 1bu3_A           40 SADDIKKAFFVIDQD-----KSGFIE-EDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGA   97 (109)
T ss_dssp             CHHHHHHHHHHHCTT-----CSSSEE-HHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSE
T ss_pred             hHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCc
Confidence            345567899999999     999998 888888888762   2 57788999999988765443

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=83.16  E-value=1.5  Score=33.09  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCC-cccCChHHHHHHHHh-ccc-C-chhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGF-KCLSKSQEVLNLYKS-MKD-I-NNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~-~~~-~-~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+.+.|..+| .+     |. |.++ .+++..++.. ... . ...+++++++.++.|+.+.
T Consensus        20 ~~~~l~~aF~~fD~~d-----g~~G~Is-~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~   78 (106)
T 2h2k_A           20 SIETVVTTFFTFARQE-----GRKDSLS-VNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSE   78 (106)
T ss_dssp             HHHHHHHHHHHHHTSS-----SSTTEEC-HHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHHcccC-----CCCCEEC-HHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCC
Confidence            3455668888888 67     75 5777 7777777754 222 1 2356777777777655443

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=83.03  E-value=1.7  Score=33.87  Aligned_cols=56  Identities=13%  Similarity=0.116  Sum_probs=36.7

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNK  360 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~  360 (379)
                      .++.+....+.++|..+|.+     |.|.++ ..++...+....- ....++.++++.++.+.
T Consensus         4 ~l~~~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~   60 (153)
T 3ox6_A            4 SLRPEEIEELREAFREFDKD-----KDGYIN-CRDLGNCMRTMGYMPTEMELIELSQQINMNL   60 (153)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH-----CSSSCC-HHHHHHHHHHTTCCCCHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Confidence            34566677788999999999     888888 6666666555432 34455555555555443

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=82.58  E-value=2.2  Score=32.27  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             hhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHH-hccc------CchhhHHHHHHhcccCCCCC
Q psy6046         305 EKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYK-SMKD------INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       305 ~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~-~~~~------~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ...+..+|..+| ++     |.| .++ .+++...+. ....      +...+++++++.++.|+.+.
T Consensus        11 ~~~l~~~F~~fD~~d-----gdG~~Is-~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~   72 (113)
T 1xk4_C           11 IETIINTFHQYSVKL-----GHPDTLN-QGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQ   72 (113)
T ss_dssp             HHHHHHHHHHHHTTS-----SSTTSBC-HHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHhhcC-----CCCCEEC-HHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCC
Confidence            445567777777 37     777 777 777776666 3221      13456677777766555443

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=82.32  E-value=0.98  Score=33.12  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             hhhHHhHHhhhcc-ccchhhcCCc-ccCChHHHHHHHHhc-----c-cCchhhHHHHHHhcccCCCC
Q psy6046         304 REKSLGDMAISLG-RSKEKLYGFK-CLSKSQEVLNLYKSM-----K-DINNICIDEIIKNINDNKGT  362 (379)
Q Consensus       304 ~~~~~~~~f~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~-----~-~~~~~~~~e~~~~~~~~~~~  362 (379)
                      ....+.+.|..+| ++     |.| .++ .+++...+...     . .....+++++++.++.++.+
T Consensus        10 ~~~~l~~~F~~fD~~d-----g~gg~I~-~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG   70 (95)
T 2wcb_A           10 HLEGIVNIFHQYSVRK-----GHFDTLS-KGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDE   70 (95)
T ss_dssp             HHHHHHHHHHHHHTSS-----SSTTEEE-HHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTS
T ss_pred             HHHHHHHHHHHHhccC-----CCCCccC-HHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCC
Confidence            3455678888888 77     876 888 88888777641     1 12456778888877766544

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=82.29  E-value=3  Score=30.91  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=31.2

Q ss_pred             hhhHHhHHhhhccccchhhcC---CcccCChHHHHHHHHhccc--C----chhhHHHHHHhcccCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYG---FKCLSKSQEVLNLYKSMKD--I----NNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~--~----~~~~~~e~~~~~~~~~~~~  363 (379)
                      ....+.++|..+|.+     +   .|.++ .+++...+....+  +    ...+++++++.++.|..+-
T Consensus         9 ~i~~l~~~F~~fD~~-----~g~~~G~Is-~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~   71 (100)
T 3nxa_A            9 AVIVLVENFYKYVSK-----YSLVKNKIS-KSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGR   71 (100)
T ss_dssp             HHHHHHHHHHHTSCT-----TCSCTTCBC-HHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCC
T ss_pred             HHHHHHHHHHHHcCc-----CCCCCCeEc-HHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCC
Confidence            344556777777775     4   36677 6677666654221  1    1345666666666655443

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=81.95  E-value=1.7  Score=33.61  Aligned_cols=52  Identities=12%  Similarity=0.164  Sum_probs=41.3

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ..+..+|..+|.+     |.|.++ .+++...+..... +...+++++++.++.++.+-
T Consensus        76 ~~l~~~F~~~D~d-----~~G~I~-~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~  128 (143)
T 3j04_B           76 DVIRNAFACFDEE-----ASGFIH-EDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGN  128 (143)
T ss_dssp             HHHHHHHTTSCSS-----SCCCCC-TTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSC
T ss_pred             HHHHHHHHHHCCC-----CCCeEc-HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCc
Confidence            4456899999999     999999 8888888887654 57778899999987665443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=81.84  E-value=0.62  Score=43.02  Aligned_cols=31  Identities=10%  Similarity=0.136  Sum_probs=26.9

Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..++|+|+.|.||+++.+   +.+.|+||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~---~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNE---ESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGG---GCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCC---CeEEEEECCCCee
Confidence            469999999999999864   6799999988765

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=81.80  E-value=1.5  Score=32.47  Aligned_cols=53  Identities=6%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc----cCchhhHHHHHHhcccCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK----DINNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ...+..+|..+|.+     |.|.++ ..++...+....    .+...+++++++.++.++.+.
T Consensus        40 ~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~   96 (108)
T 1rro_A           40 ASQVKDIFRFIDND-----QSGYLD-GDELKYFLQKFQSDARELTESETKSLMDAADNDGDGK   96 (108)
T ss_dssp             HHHHHHHHHHHCTT-----CSSEEC-THHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSS
T ss_pred             HHHHHHHHHHhCCC-----CCCcCC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCc
Confidence            44566899999999     999999 889988888763    257778899999888765443

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=81.72  E-value=2.8  Score=33.03  Aligned_cols=56  Identities=7%  Similarity=0.129  Sum_probs=37.8

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcC-CcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYG-FKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNK  360 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~  360 (379)
                      .+++.....+.+.|..+|.+     | .|.++ .+++...+...+- ....++.++++.++.+.
T Consensus        11 ~l~~~~~~~l~~~F~~~D~~-----~~~G~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~   68 (161)
T 1dtl_A           11 QLTEEQKNEFKAAFDIFVLG-----AEDGSIS-TKELGKVMRMLGQNPTPEELQEMIDEVDEDG   68 (161)
T ss_dssp             GSCHHHHHHHHHHHHHHTTT-----CGGGSBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS
T ss_pred             hCCHHHHHHHHHHHHHHcCC-----CCCCcCc-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Confidence            34556677778899999998     8 88888 7777666665432 34555666666665544

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=81.59  E-value=0.99  Score=31.01  Aligned_cols=52  Identities=15%  Similarity=0.270  Sum_probs=38.2

Q ss_pred             hhHHhHHhhhccc-cchhhcCCc-ccCChHHHHHHHHh-ccc-C-chhhHHHHHHhcccCCCC
Q psy6046         305 EKSLGDMAISLGR-SKEKLYGFK-CLSKSQEVLNLYKS-MKD-I-NNICIDEIIKNINDNKGT  362 (379)
Q Consensus       305 ~~~~~~~f~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~-~~~-~-~~~~~~e~~~~~~~~~~~  362 (379)
                      ...+..+|..+|. +     |.| .++ ..++...+.. ... . ...+++++++.++.++.+
T Consensus         6 ~~~l~~~F~~~D~~d-----~~G~~i~-~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg   62 (78)
T 1cb1_A            6 PAELKSIFEKYAAKE-----GDPNQLS-KEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDG   62 (78)
T ss_dssp             HHHHHHHHHHHHTTS-----SSTTEEC-HHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSS
T ss_pred             HHHHHHHHHHHhccC-----CCcCEeC-HHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCC
Confidence            4556788999998 8     888 888 8888888875 332 3 566788888888766544

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=81.53  E-value=1.3  Score=34.72  Aligned_cols=19  Identities=5%  Similarity=0.097  Sum_probs=9.9

Q ss_pred             hHHhHHhhhccccchhhcCCcccC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLS  329 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~  329 (379)
                      ..+.++|..+|.+     |.|.++
T Consensus         6 ~~l~~~F~~~D~d-----~~G~I~   24 (143)
T 2obh_A            6 QEIREAFDLFDAD-----GTGTID   24 (143)
T ss_dssp             HHHHHHHHTTCTT-----CCSEEE
T ss_pred             HHHHHHHHHhCCC-----CCCcCc
Confidence            3444555555555     555554

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=81.49  E-value=0.95  Score=35.83  Aligned_cols=35  Identities=11%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHH
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYK  339 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~  339 (379)
                      .++++.+..+.++|..+|.+     |.|.++ ..++...+.
T Consensus         3 ~lt~eqi~el~~~F~~~D~d-----~~G~I~-~~El~~~l~   37 (148)
T 2lmt_A            3 ELTEEQIAEFKDAFVQFDKE-----GTGKIA-TRELGTLMR   37 (148)
T ss_dssp             SCCSHHHHHHHHHHHHHHCS-----SCCEEE-GGGHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCC-----CCCeEC-HHHHHHHHH
Confidence            35566677778889999998     888887 444444433

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=80.96  E-value=2  Score=34.32  Aligned_cols=52  Identities=8%  Similarity=-0.029  Sum_probs=40.3

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      ..+..+|..+|.+     |.|.++ .+++...+...+. +...+++++++.++.|+.+.
T Consensus        95 ~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~  147 (166)
T 2mys_B           95 DVIMGAFKVLDPD-----GKGSIK-KSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGN  147 (166)
T ss_pred             HHHHHHHHHhCCC-----CCccee-HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCe
Confidence            4556889999999     999999 8888888877643 56778888888887665443

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=80.91  E-value=0.67  Score=42.15  Aligned_cols=30  Identities=13%  Similarity=0.012  Sum_probs=25.5

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ...++|+|++|.||+++ +    .+.|+||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~----~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D----GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S----SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C----CCEEEECCCCCc
Confidence            45689999999999997 2    689999998754

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=80.53  E-value=2.9  Score=32.95  Aligned_cols=57  Identities=11%  Similarity=0.058  Sum_probs=39.3

Q ss_pred             cccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCC
Q psy6046         298 SLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNK  360 (379)
Q Consensus       298 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~  360 (379)
                      ...++.....+.++|..+|.+     |.|.++ .+++...+....- ....++..+++.++.+.
T Consensus        15 ~~l~~~~~~~l~~~F~~~D~~-----~~G~i~-~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~   72 (161)
T 3fwb_A           15 SELLEEQKQEIYEAFSLFDMN-----NDGFLD-YHELKVAMKALGFELPKREILDLIDEYDSEG   72 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTT-----SSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC-----CCCcCc-HHHHHHHHHHcCCCCCHHHHHHHHHHhCcCC
Confidence            456677777888999999999     888888 7777666665432 34555666666665544

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=80.49  E-value=2.6  Score=33.66  Aligned_cols=58  Identities=9%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             cccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         298 SLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       298 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      ..++.+....+.++|..+|.+     |.|.++ ..++...+....- ....++.++++.++.++.
T Consensus        20 ~~l~~~~~~~l~~~F~~~D~d-----~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~   78 (169)
T 3qrx_A           20 VGLTEEQKQEIREAFDLFDTD-----GSGTID-AKELKVAMRALGFEPKKEEIKKMISEIDKDGS   78 (169)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT-----CCSEEC-HHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSS
T ss_pred             CCCCHHHHHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC
Confidence            344556667778889999988     888888 6777666655433 345556666666655443

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=80.40  E-value=3.1  Score=33.17  Aligned_cols=51  Identities=8%  Similarity=0.122  Sum_probs=35.4

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .+..+|..+|.+     |.|.++ .+++...+..... +...+++++++.++.++.+-
T Consensus       102 ~~~~~F~~~D~d-----~~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~  153 (169)
T 3qrx_A          102 EILKAFRLFDDD-----NSGTIT-IKDLRRVAKELGENLTEEELQEMIAEADRNDDNE  153 (169)
T ss_dssp             HHHHHHHHHCTT-----CSSSBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSC
T ss_pred             HHHHHHHHhCCC-----CCCcCC-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCC
Confidence            445678888888     888888 7777777776543 45667777777776655443

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=80.22  E-value=2.5  Score=32.69  Aligned_cols=47  Identities=17%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhccc
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNIND  358 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~  358 (379)
                      ..+..+|..+|.+     |.|.++ .+++.+.+...+. +...+++++++.+++
T Consensus        84 ~~~~~~F~~~D~d-----~~G~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~d~  131 (147)
T 4ds7_A           84 QELLEAFKVFDKN-----GDGLIS-AAELKHVLTSIGEKLTDAEVDEMLREVSD  131 (147)
T ss_dssp             HHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhCCC-----CCCeEC-HHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Confidence            3455789999999     999999 8999999887654 677889999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-30
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	3e-29
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-26
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-26
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-25
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-25
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-24
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-22
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-21
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-21
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-20
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	9e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-19
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	6e-19
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	8e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-17
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-17
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-17
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-17
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-17
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-15
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-15
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-15
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	7e-15
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	7e-15
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-14
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-14
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-13
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	6e-12
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-11
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	9e-11
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-10
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-10
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-10
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-10
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-10
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-10
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-10
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-10
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-09
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-09
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-09
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-09
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-08
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-08
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-08
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	0.001

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-30
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
            +   F ++P+N++      +  IK+ +F  +R +  G   R L   P+Y          
Sbjct: 121 HNIGHFDIRPENIIYQTR-RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDV 179

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
                   SLG   YVLL+G +PF  ET+ +   NI  A+  F +E F++IS EA DF+ 
Sbjct: 180 VSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVD 239

Query: 203 KILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREA 262
           ++L+K    RMTA EAL+HPWL   KQ + RV      ++   +     ++K L+    A
Sbjct: 240 RLLVKERKSRMTASEALQHPWL---KQKIERVSTKVIRTLKHRRYYHTLIKKDLNMVVSA 296

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (283), Expect = 3e-29
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
           +  +   L+P+NL+      +  I + DF +S++   G  +    GTP YV         
Sbjct: 126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKP 185

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
                   S+GV AY+LL G+ PF  E D++ F  I KA+ +F    ++DIS  AKDFI 
Sbjct: 186 YSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIR 245

Query: 203 KILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKK 250
            ++ K+P +R T ++AL+HPW+     +   +  S    I +N    K
Sbjct: 246 HLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSK 293

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-26
 Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 16/146 (10%)

Query: 98  MDFIFFFLQPQN-LVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------ 150
           +    F L+P+N +++  + P   IK+ DF ++  I  G E + + GTP++V        
Sbjct: 132 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYE 191

Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    S+GV  Y+LL+G SPF G+T  ET  N+S    +F DE F + S  AKDFI
Sbjct: 192 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 251

Query: 202 AKILIKNPMERMTAKEALKHPWLMNK 227
            ++L+K+P +RMT +++L+HPW+  K
Sbjct: 252 RRLLVKDPKKRMTIQDSLQHPWIKPK 277

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  106 bits (265), Expect = 2e-26
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 16/199 (8%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
              +   ++P+N +M        +K+ DF ++  +     ++    T ++          
Sbjct: 146 HSIVHLDIKPEN-IMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREP 204

Query: 151 --------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA 202
                   ++GV  YVLL+G SPF GE D ET +N+ +   +F ++ F  +SPEAKDFI 
Sbjct: 205 VGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIK 264

Query: 203 KILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREA 262
            +L K P +R+T  +AL+HPWL      +T    SS  + I+ +  +K       +    
Sbjct: 265 NLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIG 324

Query: 263 LFEKVISASKLQQENLRKS 281
                 S  K + +  +  
Sbjct: 325 RIANFSSLRKHRPQEYQIY 343

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 18/202 (8%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDY----------VGK---- 150
           L+P+N++      + ++K+ DF ++  +     ++   GT ++          VG     
Sbjct: 150 LKPENIMFTTKR-SNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDM 208

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S+GV +Y+LL+G SPFGGE D ET RN+     +  D  F  IS + KDFI K+L+ +P
Sbjct: 209 WSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADP 268

Query: 210 MERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
             RMT  +AL+HPWL                S     ++    +            ++ +
Sbjct: 269 NTRMTIHQALEHPWL--TPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISN 326

Query: 270 ASKLQQENLRKSALLKYNKTRR 291
            S L++   ++ ++      R 
Sbjct: 327 YSSLRKHRPQEYSIRDAFWDRS 348

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  101 bits (252), Expect = 3e-25
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 24/141 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+P+N+++  D    +IK+ DF  S  +  G ++RE+ GTP Y+                
Sbjct: 136 LKPENILLDDD---MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGY 192

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  S GV  Y LL G  PF         R I      F    ++D S   KD +++
Sbjct: 193 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSR 252

Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L+  P +R TA+EAL HP+ 
Sbjct: 253 FLVVQPQKRYTAEEALAHPFF 273

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 5e-24
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 23/135 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           ++P+NL++       ++K+ DF  S           L GT DY+      G+        
Sbjct: 132 IKPENLLLGSAG---ELKIADFGWSVHAPSS-RRTTLCGTLDYLPPEMIEGRMHDEKVDL 187

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            SLGV  Y  L G  PF   T  ET++ IS+ +  FPD     ++  A+D I+++L  NP
Sbjct: 188 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD----FVTEGARDLISRLLKHNP 243

Query: 210 MERMTAKEALKHPWL 224
            +R   +E L+HPW+
Sbjct: 244 SQRPMLREVLEHPWI 258

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 2e-22
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P+NL+     PN  +K+ DF  ++       +     TP YV                
Sbjct: 137 VKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM 196

Query: 151 -SLGVTAYVLLTGFSPFGGETDSET----FRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
            SLGV  Y+LL G+ PF               I   Q +FP+  + ++S E K  I  +L
Sbjct: 197 WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL 256

Query: 206 IKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFE 265
              P +RMT  E + HPW+M   ++      +S   + ++++  +++++ ++ +   +  
Sbjct: 257 KTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTS-RVLKEDKERWEDVKEEMTSALATMRV 315

Query: 266 KVISASKLQQENLRKSALLK 285
                   + E+     LLK
Sbjct: 316 DYEQIKIKKIEDASNPLLLK 335

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (226), Expect = 2e-21
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 25/147 (17%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR--------------ELLG 143
              I   L+P+N+++  D     I++ DF  ++V+    +                ELL 
Sbjct: 127 KGIIHRDLKPENILLNED---MHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT 183

Query: 144 TPDYVGK----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
                      +LG   Y L+ G  PF    +   F+ I K + DFP    E   P+A+D
Sbjct: 184 EKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP----EKFFPKARD 239

Query: 200 FIAKILIKNPMERMTAKEALKHPWLMN 226
            + K+L+ +  +R+  +E   +  L  
Sbjct: 240 LVEKLLVLDATKRLGCEEMEGYGPLKA 266

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (224), Expect = 2e-21
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR------------ELLGTPDYVGK-- 150
           L+P N+ + G     ++K+ DF ++R++                   E +    Y  K  
Sbjct: 140 LKPANVFLDGK---QNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSD 196

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
             SLG   Y L     PF   +  E    I + +      +    S E  + I ++L   
Sbjct: 197 IWSLGCLLYELCALMPPFTAFSQKELAGKIREGK---FRRIPYRYSDELNEIITRMLNLK 253

Query: 209 PMERMTAKEALKHPWL 224
              R + +E L++P +
Sbjct: 254 DYHRPSVEEILENPLI 269

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 4e-21
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV------GK-------- 150
           L+  N+ + G      +K+ D  ++  +      + ++GTP+++       K        
Sbjct: 140 LKCDNIFITGP--TGSVKIGDLGLAT-LKRASFAKAVIGTPEFMAPEMYEEKYDESVDVY 196

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           + G+    + T   P+    ++        + +  P    +   PE K+ I   + +N  
Sbjct: 197 AFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK-PASFDKVAIPEVKEIIEGCIRQNKD 255

Query: 211 ERMTAKEALKHPWL 224
           ER + K+ L H + 
Sbjct: 256 ERYSIKDLLNHAFF 269

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 4e-21
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 25/141 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR------------ELLGTPDYVGK-- 150
           L+  N++      + DIK+ DF +S      I+ R            E++       +  
Sbjct: 136 LKAGNILF---TLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPY 192

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
                  SLG+T   +     P            I+K++     +     S   KDF+ K
Sbjct: 193 DYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQ-PSRWSSNFKDFLKK 251

Query: 204 ILIKNPMERMTAKEALKHPWL 224
            L KN   R T  + L+HP++
Sbjct: 252 CLEKNVDARWTTSQLLQHPFV 272

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 2e-20
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 28/141 (19%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELLGTPDYVGK------------- 150
           ++ +NL++     +  IK+ DF + +  + DG  ++   GTP+Y+               
Sbjct: 131 IKLENLML---DKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVD 187

Query: 151 --SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKN 208
              LGV  Y ++ G  PF  +     F  I   ++ FP      +SPEAK  +A +L K+
Sbjct: 188 WWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR----TLSPEAKSLLAGLLKKD 243

Query: 209 PMERM-----TAKEALKHPWL 224
           P +R+      AKE ++H + 
Sbjct: 244 PKQRLGGGPSDAKEVMEHRFF 264

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.4 bits (216), Expect = 5e-20
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 30/187 (16%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
            + I   ++  N+++        +K+ DF  + ++         +GTP ++         
Sbjct: 134 HNMIHRDVKAGNILLSEPG---LVKLGDFGSASIMAPA---NSFVGTPYWMAPEVILAMD 187

Query: 151 -----------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
                      SLG+T   L     P           +I  AQ + P       S   ++
Sbjct: 188 EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI--AQNESPALQSGHWSEYFRN 245

Query: 200 FIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSIIQNQQNKKNLRKYLSKS 259
           F+   L K P +R T++  LKH ++   ++    V            +   NL+    K 
Sbjct: 246 FVDSCLQKIPQDRPTSEVLLKHRFV--LRERPPTVIMDLIQRTKDAVRELDNLQY--RKM 301

Query: 260 REALFEK 266
           ++ LF++
Sbjct: 302 KKILFQE 308

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 9e-20
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL-DGIEIRELLGTPDYVGK------ 150
              I   ++  N+++     +  +K+ DF     I  +  +   ++GTP ++        
Sbjct: 135 NQVIHRDIKSDNILL---GMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191

Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    SLG+ A  ++ G  P+  E        I+        +  E +S   +DF+
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG-TPELQNPEKLSAIFRDFL 250

Query: 202 AKILIKNPMERMTAKEALKHPWLMNKK 228
            + L  +  +R +AKE L+H +L   K
Sbjct: 251 NRCLDMDVEKRGSAKELLQHQFLKIAK 277

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.8 bits (209), Expect = 4e-19
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------G 149
           L+P+N+++  +     IK+ DF  ++ + D      L GTPDY+                
Sbjct: 130 LKPENILLDKN---GHIKITDFGFAKYVPD--VTYTLCGTPDYIAPEVVSTKPYNKSIDW 184

Query: 150 KSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            S G+  Y +L G++PF      +T+  I  A+L FP       + + KD +++++ ++ 
Sbjct: 185 WSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFP----PFFNEDVKDLLSRLITRDL 240

Query: 210 MERM-----TAKEALKHPWL--MNKKQIMTR-VGCSSCPSIIQNQQNKKNLRKY 255
            +R+       ++   HPW   +  +++++R +     P I Q Q +     KY
Sbjct: 241 SQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKY 294

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 6e-19
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 29/145 (20%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV--------- 148
              +   ++ +N+++  +    ++K+ DF     +L      +  GT  Y          
Sbjct: 129 CGVLHRDIKDENILIDLN--RGELKLIDFGSGA-LLKDTVYTDFDGTRVYSPPEWIRYHR 185

Query: 149 -------GKSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    SLG+  Y ++ G  PF  +        I + Q+ F     + +S E +  I
Sbjct: 186 YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFR----QRVSSECQHLI 235

Query: 202 AKILIKNPMERMTAKEALKHPWLMN 226
              L   P +R T +E   HPW+ +
Sbjct: 236 RWCLALRPSDRPTFEEIQNHPWMQD 260

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 8e-19
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 23/146 (15%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL---LGTPDYVG----- 149
           +      ++P+NL++       ++K+ DF ++ V       R L    GT  YV      
Sbjct: 122 IGITHRDIKPENLLLDER---DNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLK 178

Query: 150 -----------KSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
                       S G+    +L G  P+   +DS    +  K +  + +  ++ I     
Sbjct: 179 RREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WKKIDSAPL 237

Query: 199 DFIAKILIKNPMERMTAKEALKHPWL 224
             + KIL++NP  R+T  +  K  W 
Sbjct: 238 ALLHKILVENPSARITIPDIKKDRWY 263

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 1e-17
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 52/176 (29%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-----IRELLGTPDYVGK-- 150
              +   ++  N+++     +  +K+ DF ++R                + T  Y     
Sbjct: 136 NKILHRDMKAANVLI---TRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPEL 192

Query: 151 --------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI--- 193
                           G     + T      G T+      IS+       E++ ++   
Sbjct: 193 LLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNY 252

Query: 194 -------------------------SPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                                     P A D I K+L+ +P +R+ + +AL H + 
Sbjct: 253 ELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 308

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 2e-17
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 44/164 (26%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-IRELLGTPDYVGK------------- 150
           L+P NL++     N  +K+ DF +++            + T  Y                
Sbjct: 126 LKPNNLLLD---ENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGV 182

Query: 151 ---SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE------------------- 188
              ++G     LL       G++D +    I +      +E                   
Sbjct: 183 DMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPG 242

Query: 189 -----LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK 227
                +F     +  D I  + + NP  R+TA +ALK  +  N+
Sbjct: 243 IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNR 286

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 2e-17
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 24/135 (17%)

Query: 107 PQNLVMMGDFPNCDIKVCDFEISR-VILDGIEIRELLGTPDYVGK--------------- 150
             N+++  D      K+ DF + +  +L   +     GTPDY+                 
Sbjct: 131 LDNILLDKDGHI---KIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWW 187

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPM 210
           S GV  Y +L G SPF G+ + E F +I      +P      +  EAKD + K+ ++ P 
Sbjct: 188 SFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYP----RWLEKEAKDLLVKLFVREPE 243

Query: 211 ERMTAK-EALKHPWL 224
           +R+  + +  +HP  
Sbjct: 244 KRLGVRGDIRQHPLF 258

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-17
 Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 29/238 (12%)

Query: 13  NRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPEPLL 72
            +A      K  + T+ E    +    S  +V +      +      ++     +    L
Sbjct: 61  KKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHL 120

Query: 73  GLNPRPPVYQASATTK--AGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR 130
               R   ++          ++     +  I+  ++ +N+++     N  + + DF +S+
Sbjct: 121 SQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLD---SNGHVVLTDFGLSK 177

Query: 131 VILDG--------------IEIRELLGTPDYVGK-----SLGVTAYVLLTGFSPFGGETD 171
             +                +    + G      K     SLGV  Y LLTG SPF  + +
Sbjct: 178 EFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE 237

Query: 172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERM-----TAKEALKHPWL 224
             +   IS+  L       +++S  AKD I ++L+K+P +R+      A E  +H + 
Sbjct: 238 KNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 295

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 8e-17
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 41/164 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           L+PQN+++     +  IK+ DF ++R+    + +  ++ T  Y                 
Sbjct: 142 LKPQNILVTS---SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDL 198

Query: 151 -SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE--------------------- 188
            S+G     +      F G +D +    I        +E                     
Sbjct: 199 WSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPI 258

Query: 189 --LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI 230
                DI    KD + K L  NP +R++A  AL HP+  + ++ 
Sbjct: 259 EKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERC 302

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 42/155 (27%)

Query: 112 MMGDFPNCDIKVCDFEISRVILDGIEIR-------------ELLGTPDYVGK----SLGV 154
            +      ++K+ DF ++R     +                 L+G+  Y       S+G 
Sbjct: 130 NLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGC 189

Query: 155 TAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE-------------------------L 189
               ++ G   F G ++++    I +       +                          
Sbjct: 190 IFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESF 249

Query: 190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
            + +     D ++K+L  +P +R+TAK+AL+H + 
Sbjct: 250 LKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 1e-15
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 43/168 (25%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI------------RELLGTP 145
                  ++PQNL++  D     +K+CDF  ++ ++ G                 + G  
Sbjct: 141 FGICHRDIKPQNLLLDPD--TAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGAT 198

Query: 146 DYVGK----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE------------- 188
           DY       S G     LL G   F G++  +    I K       E             
Sbjct: 199 DYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFK 258

Query: 189 ------------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                             PEA    +++L   P  R+T  EA  H + 
Sbjct: 259 FPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.0 bits (181), Expect = 1e-15
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE----LLGTPDYV------GK---- 150
           ++P N+++        +KV DF I+R I D          ++GT  Y+      G     
Sbjct: 137 VKPANIMIS---ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA 193

Query: 151 -----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
                SLG   Y +LTG  PF G++         +     P    E +S +    + K L
Sbjct: 194 RSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKAL 253

Query: 206 IKNPMERMTAKEALKHPWL 224
            KNP  R      ++   +
Sbjct: 254 AKNPENRYQTAAEMRADLV 272

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (183), Expect = 1e-15
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 26/148 (17%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
              ++  L+P N+++     +  +++ D  ++       +    +GT  Y+         
Sbjct: 126 RFVVYRDLKPANILLD---EHGHVRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQKGV 181

Query: 151 ---------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                    SLG   + LL G SPF      +    I +  L    EL +  SPE +  +
Sbjct: 182 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EIDRMTLTMAVELPDSFSPELRSLL 240

Query: 202 AKILIKNPMERMT-----AKEALKHPWL 224
             +L ++   R+      A+E  + P+ 
Sbjct: 241 EGLLQRDVNRRLGCLGRGAQEVKESPFF 268

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-15
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDG---IEIRELLGTPDYVGK----------- 150
           L+  N+ +  D     +K+ DF ++ V        +  +L G+  ++             
Sbjct: 130 LKSNNIFLHEDL---TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186

Query: 151 -------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD--ELFEDISPEAKDFI 201
                  + G+  Y L+TG  P+    + +    +       PD  ++  +     K  +
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLM 246

Query: 202 AKILIKNPMERMTAKEALKHPWLMNK 227
           A+ L K   ER    + L    L+ +
Sbjct: 247 AECLKKKRDERPLFPQILASIELLAR 272

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 5e-15
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 33/147 (22%)

Query: 150 KSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE--------------------- 188
            S+G     ++TG + F G    +  + I K     P E                     
Sbjct: 203 WSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELE 262

Query: 189 ------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSI 242
                 +  + SP A + + K+L+ +  +R+TA EAL HP+  +             P +
Sbjct: 263 KKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDE------PQV 316

Query: 243 IQNQQNKKNLRKYLSKSREALFEKVIS 269
            +   +  ++ + L + +   +++V+S
Sbjct: 317 QKYDDSFDDVDRTLDEWKRVTYKEVLS 343

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 6e-15
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 59/175 (33%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK-------------- 150
           ++P N+++       +IK+CDF +S  ++D       +GT  Y+                
Sbjct: 131 VKPSNILV---NSRGEIKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQGTHYSVQSDI 186

Query: 151 -SLGVTAYVLLTGFSPFGGETDSE------------------------------------ 173
            S+G++   +  G  P       E                                    
Sbjct: 187 WSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRP 246

Query: 174 ---TFRNISKAQLDFPDELFED-ISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
               F  +     + P +L     S E +DF+ K LIKNP ER   K+ + H ++
Sbjct: 247 PMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 7e-15
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 55/212 (25%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR---------------ELLGTPDYVG 149
           L+P NL++      CD+K+CDF ++RV     +                 E++       
Sbjct: 135 LKPSNLLLN---TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYT 191

Query: 150 K-----SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDE---------------- 188
           K     S+G     +L+    F G+   +   +I         E                
Sbjct: 192 KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLS 251

Query: 189 -----------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCS 237
                      LF +   +A D + K+L  NP +R+  ++AL HP+L   +Q        
Sbjct: 252 LPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYL---EQYYDPSDEP 308

Query: 238 SCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
              +  +      +L K   K +E +FE+   
Sbjct: 309 IAEAPFKFDMELDDLPK--EKLKELIFEETAR 338

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (177), Expect = 7e-15
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 29/142 (20%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV---------------G 149
           L+P+NL++        I+V DF  ++ +        L GTP+ +                
Sbjct: 167 LKPENLLID---QQGYIQVTDFGFAKRVKG--RTWTLCGTPEALAPEIILSKGYNKAVDW 221

Query: 150 KSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
            +LGV  Y +  G+ PF  +   + +  I   ++ FP       S + KD +  +L  + 
Sbjct: 222 WALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSH----FSSDLKDLLRNLLQVDL 277

Query: 210 MERM-----TAKEALKHPWLMN 226
            +R         +   H W   
Sbjct: 278 TKRFGNLKNGVNDIKNHKWFAT 299

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 1e-14
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 33/146 (22%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL--------------------- 189
           S+G     LLTG + F G    +  + I +       EL                     
Sbjct: 204 SVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPK 263

Query: 190 ------FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTRVGCSSCPSII 243
                 F   +P A D + K+L+ +  +R+TA +AL H +                P   
Sbjct: 264 MNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP------DDEPVAD 317

Query: 244 QNQQNKKNLRKYLSKSREALFEKVIS 269
              Q+ ++    + + +   +++VIS
Sbjct: 318 PYDQSFESRDLLIDEWKSLTYDEVIS 343

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 3e-14
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 25/101 (24%)

Query: 151 SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD----------------------- 187
           SLG     ++T  + F G+++ +    I +      +                       
Sbjct: 188 SLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQD 247

Query: 188 --ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN 226
             ++   +  + +  ++++L  +P +R++AK AL HP+  +
Sbjct: 248 FSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQD 288

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 4e-14
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 46/163 (28%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-------------ELLGTPDYVGKS 151
           L+PQNL++     N ++K+ +F ++R     +                 L G   Y    
Sbjct: 127 LKPQNLLI---NRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSI 183

Query: 152 ----LGVTAYVLLTGFSP-FGGETDSETFRNISKAQLDFPDE------------------ 188
                G     L     P F G    +  + I +      +E                  
Sbjct: 184 DMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYP 243

Query: 189 -------LFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                  +   ++   +D +  +L  NP++R++A+EAL+HP+ 
Sbjct: 244 ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYF 286

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 4e-14
 Identities = 30/218 (13%), Positives = 75/218 (34%), Gaps = 60/218 (27%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVG--------------- 149
           L+P N+V+  D   C +K+ DF ++R       +   + T  Y                 
Sbjct: 145 LKPSNIVVKSD---CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 201

Query: 150 KSLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI---------------- 193
            S+G     ++     F G    + +  + +       E  + +                
Sbjct: 202 WSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 261

Query: 194 ----------------------SPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIM 231
                                 + +A+D ++K+L+ +P +R++  +AL+HP++       
Sbjct: 262 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPA 321

Query: 232 TRVGCSSCPSIIQNQQNKKNLRKYLSKSREALFEKVIS 269
                       Q  + +  + ++    +E ++++V++
Sbjct: 322 EVEAPPPQIYDKQLDEREHTIEEW----KELIYKEVMN 355

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 5e-13
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 52/170 (30%)

Query: 104 FLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVG-------------- 149
            ++P N+++  D  +  +++ D+ ++     G E    + +  + G              
Sbjct: 154 DVKPHNVMI--DHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSL 211

Query: 150 --KSLGVTAYVLLTGFSPF-GGETDSETFRNISKA------------------------- 181
              SLG     ++    PF  G  + +    I+K                          
Sbjct: 212 DMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL 271

Query: 182 --------QLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPW 223
                   +     E    +SPEA DF+ K+L  +   R+TA+EA++HP+
Sbjct: 272 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPY 321

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 6e-12
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 22/140 (15%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
             FI   L  +N+++  +      K+ DF +SR     ++         ++         
Sbjct: 146 KQFIHRDLAARNILVGEN---YVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV 202

Query: 151 --------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI 201
                   S GV  + +++ G +P+ G T +E +  + +    +  E   +   E  D +
Sbjct: 203 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ---GYRLEKPLNCDDEVYDLM 259

Query: 202 AKILIKNPMERMTAKEALKH 221
            +   + P ER +  + L  
Sbjct: 260 RQCWREKPYERPSFAQILVS 279

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 3e-11
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-------------ELLGT 144
             F+   L  +N ++        +KV DF +SR +LD                  E+L  
Sbjct: 119 KQFLHRDLAARNCLVNDQG---VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY 175

Query: 145 PDYVGKS----LGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
             +  KS     GV  + + + G  P+   T+SET  +I++    +   L    S +   
Sbjct: 176 SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHL---ASEKVYT 232

Query: 200 FIAKILIKNPMERMTAKEALKH 221
            +     +   ER T K  L +
Sbjct: 233 IMYSCWHEKADERPTFKILLSN 254

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 6e-11
 Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 26/130 (20%)

Query: 117 PNCDIKVCDFEISRVILDGIEIRE----LLGTPDYVGK---------------SLGVTAY 157
                K+ DF +S+ +       +          +                  S GV  +
Sbjct: 142 TQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMW 201

Query: 158 VLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAK 216
              + G  P+ G   SE    + K +             E  D +      +   R    
Sbjct: 202 EAFSYGQKPYRGMKGSEVTAMLEKGE---RMGCPAGCPREMYDLMNLCWTYDVENRPGFA 258

Query: 217 E---ALKHPW 223
                L++ +
Sbjct: 259 AVELRLRNYY 268

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 9e-11
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 26/149 (17%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE--LLGTPDYVGK----- 150
           M+++   L+  N+++  +      KV DF ++R+I D              +        
Sbjct: 132 MNYVHRDLRAANILVGENL---VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY 188

Query: 151 ----------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD 199
                     S G+    L T G  P+ G  + E    + +    +      +      D
Sbjct: 189 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER---GYRMPCPPECPESLHD 245

Query: 200 FIAKILIKNPMERMTAKEALK--HPWLMN 226
            + +   K P ER T +        +  +
Sbjct: 246 LMCQCWRKEPEERPTFEYLQAFLEDYFTS 274

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 9e-11
 Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 30/160 (18%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG--------IEIRELLGTPDYVG 149
            +FI   ++P N +M        + + DF +++   D          E + L GT  Y  
Sbjct: 122 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS 181

Query: 150 K---------------SLGVTAYVLLTG---FSPFGGETDSETFRNISKAQLDFP-DELF 190
                           SLG        G   +      T  + +  IS+ ++  P + L 
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 241

Query: 191 EDISPEAKDFIAKILIKNPMERMTA---KEALKHPWLMNK 227
           +    E   ++         ++      ++  ++ +    
Sbjct: 242 KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 281

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 29/156 (18%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYVGK--- 150
            +F+   L  +N++++        K+ DF +S+ +                  +      
Sbjct: 128 KNFVHRDLAARNVLLVNRH---YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI 184

Query: 151 ------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEA 197
                       S GVT +  L+ G  P+      E    I + +     E   +  PE 
Sbjct: 185 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK---RMECPPECPPEL 241

Query: 198 KDFIAKILIKNPMERMTAKE---ALKHPWLMNKKQI 230
              ++   I    +R         ++  +     ++
Sbjct: 242 YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 277

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 60/182 (32%)

Query: 105 LQPQN-LVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYV--------------- 148
           ++P+N L+ + D P   I++   ++             + T +Y                
Sbjct: 152 IKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGAD 211

Query: 149 GKSLGVTAYVLLTGFSPFG---------------------GETDSETFRNISKAQLDFPD 187
             S     + L+TG   F                      GE  S   RN    +  F  
Sbjct: 212 IWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNS 271

Query: 188 -----------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL 224
                                  +  +D + E  DF++ +L  +P +R  A   + HPWL
Sbjct: 272 RGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 331

Query: 225 MN 226
            +
Sbjct: 332 KD 333

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 2e-10
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 25/142 (17%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR--------------ELLG 143
             F+   L  +N ++  +     +K+ DF +SR I      +              E + 
Sbjct: 159 RKFVHRDLATRNCLVGENM---VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF 215

Query: 144 TPDYVGK----SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
              Y  +    + GV  + + + G  P+ G    E    +            E+   E  
Sbjct: 216 YNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGN---ILACPENCPLELY 272

Query: 199 DFIAKILIKNPMERMTAKEALK 220
           + +     K P +R +     +
Sbjct: 273 NLMRLCWSKLPADRPSFCSIHR 294

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL---LGTPDYVGK----------- 150
           L  +N+++        +K+ DF +++++    +            ++             
Sbjct: 137 LAARNVLVKTPQ---HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQ 193

Query: 151 ----SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
               S GVT + L+T G  P+ G   SE    + K             + +    + K  
Sbjct: 194 SDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK---GERLPQPPICTIDVYMIMVKCW 250

Query: 206 IKNPMERMTAKEALKHPWLMNK 227
           + +   R   +E +     M +
Sbjct: 251 MIDADSRPKFRELIIEFSKMAR 272

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 20/138 (14%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR---------ELLGTPDYV 148
            +F+   L  +N+++  D      KV DF +++      +           E L    + 
Sbjct: 122 NNFVHRDLAARNVLVSEDN---VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS 178

Query: 149 GK----SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK 203
            K    S G+  + + + G  P+      +    + K    +  +  +   P   + +  
Sbjct: 179 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK---GYKMDAPDGCPPAVYEVMKN 235

Query: 204 ILIKNPMERMTAKEALKH 221
               +   R +  +  + 
Sbjct: 236 CWHLDAAMRPSFLQLREQ 253

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR-------------ELLGTPDYVGK- 150
           +  +N+++  +     +K+ DF +SR + D    +             E +    +    
Sbjct: 134 IAARNVLVSSND---CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSAS 190

Query: 151 ---SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
                GV  + +L  G  PF G  +++    I   +      +  +  P     + K   
Sbjct: 191 DVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE---RLPMPPNCPPTLYSLMTKCWA 247

Query: 207 KNPMERMTAKEALKH 221
            +P  R    E    
Sbjct: 248 YDPSRRPRFTELKAQ 262

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-10
 Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 24/136 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVG------------ 149
           L  +N+++        +K+CDF ++R I+                ++             
Sbjct: 190 LAARNVLV---THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIK 246

Query: 150 ---KSLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
               S G+  + + + G +P+ G      F  + +             + E    +    
Sbjct: 247 SDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQP--FYATEEIYIIMQSCW 304

Query: 206 IKNPMERMTAKEALKH 221
             +  +R +       
Sbjct: 305 AFDSRKRPSFPNLTSF 320

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 8e-10
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 25/137 (18%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL----LGTPDYV------------ 148
           L  +NL++        +K+ DF + R +    +   +         +             
Sbjct: 137 LAARNLLLA---TRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSH 193

Query: 149 ---GKSLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                  GVT + + T G  P+ G   S+    I K     P    ED   +  + + + 
Sbjct: 194 ASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRP--EDCPQDIYNVMVQC 251

Query: 205 LIKNPMERMTAKEALKH 221
               P +R T       
Sbjct: 252 WAHKPEDRPTFVALRDF 268

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 28/146 (19%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
           M+++   L  +N+++  +      KV DF +SR + D                       
Sbjct: 147 MNYVHRDLAARNILVNSNL---VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPE 203

Query: 151 --------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP 195
                         S G+  + +++ G  P+   T+ +    I +   D+      D   
Sbjct: 204 AIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQ---DYRLPPPMDCPS 260

Query: 196 EAKDFIAKILIKNPMERMTAKEALKH 221
                +     K+   R    + +  
Sbjct: 261 ALHQLMLDCWQKDRNHRPKFGQIVNT 286

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDG--IEIRELLGTPDYVGK------------ 150
           L  +N ++  +     IKV DF ++R +LD              +               
Sbjct: 127 LAARNCLVGENQ---VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKS 183

Query: 151 ---SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
              S GV  + + + G  P+   ++SE   +IS     +   L    S      +     
Sbjct: 184 DVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL---ASTHVYQIMNHCWK 240

Query: 207 KNPMERMTAKEALKH 221
           + P +R      L+ 
Sbjct: 241 ERPEDRPAFSRLLRQ 255

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 24/143 (16%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL---DGIEIRELLGTPDYVGK---- 150
              I   L  +N+++        +K+CDF ++R I    D +   +      ++      
Sbjct: 153 RKCIHRDLAARNILLSEKN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 209

Query: 151 -----------SLGVTAYVLLTGF-SPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
                      S GV  + + +   SP+ G    E F    K          +  +PE  
Sbjct: 210 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR--APDYTTPEMY 267

Query: 199 DFIAKILIKNPMERMTAKEALKH 221
             +       P +R T  E ++H
Sbjct: 268 QTMLDCWHGEPSQRPTFSELVEH 290

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 5e-09
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLGTPDYVGK------- 150
            +FI   L  +N ++  +     +KV DF +SR ++ G       G    +         
Sbjct: 134 KNFIHRDLAARNCLVGENH---LVKVADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESLA 189

Query: 151 -----------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK 198
                      + GV  + + T G SP+ G   S+ +  + K   D+  E  E    +  
Sbjct: 190 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK---DYRMERPEGCPEKVY 246

Query: 199 DFIAKILIKNPMERMTAKEALK 220
           + +      NP +R +  E  +
Sbjct: 247 ELMRACWQWNPSDRPSFAEIHQ 268

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 6e-09
 Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 24/134 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRE--LLGTPDYVGK------------ 150
           L+  N+++         K+ DF ++R+I D              +               
Sbjct: 135 LRAANILVS---DTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 191

Query: 151 ---SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI 206
              S G+    ++T G  P+ G T+ E  +N+ +    +     ++   E    +     
Sbjct: 192 DVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER---GYRMVRPDNCPEELYQLMRLCWK 248

Query: 207 KNPMERMTAKEALK 220
           + P +R T      
Sbjct: 249 ERPEDRPTFDYLRS 262

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 29/152 (19%)

Query: 98  MDFIFFFLQPQNLVMMGDFPNCD--IKVCDFEISRVILDGI--------EIRELLGTPDY 147
              ++  ++P N ++          I V DF + +   D +        E + L GT  Y
Sbjct: 120 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179

Query: 148 VGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA----QLDFPDE 188
           +                 +LG      L G  P+ G   +   +   +     Q     E
Sbjct: 180 MSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRE 239

Query: 189 LFEDISPEAKDFIAKILIKNPMERMTAKEALK 220
           L      E   ++                   
Sbjct: 240 LCAGFPEEFYKYMHYARNLAFDATPDYDYLQG 271

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 26/136 (19%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELL----GTPDYVG----------- 149
           L  +N+++  +      KV DF +SRV+ D  E             +             
Sbjct: 136 LAARNILVNSNL---VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTS 192

Query: 150 ----KSLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI 204
                S G+  + ++T G  P+   ++ E  + I+     F      D        + + 
Sbjct: 193 ASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIND---GFRLPTPMDCPSAIYQLMMQC 249

Query: 205 LIKNPMERMTAKEALK 220
             +    R    + + 
Sbjct: 250 WQQERARRPKFADIVS 265

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 151 SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNP 209
           S GV  + + T G SP+ G    E F+ + +       +   + + E    +       P
Sbjct: 222 SFGVLLWEIFTLGGSPYPGVPVEELFKLLKE---GHRMDKPSNCTNELYMMMRDCWHAVP 278

Query: 210 MERMTAKEALKH 221
            +R T K+ ++ 
Sbjct: 279 SQRPTFKQLVED 290

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR---ELLGTPDYVGK----------- 150
           L  +N+++         K+CDF ++R I +               ++             
Sbjct: 171 LAARNILLTHGR---ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 227

Query: 151 ----SLGVTAYVLLTGFSP-FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKIL 205
               S G+  + L +  S  + G      F  + K          E    E  D +    
Sbjct: 228 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP--EHAPAEMYDIMKTCW 285

Query: 206 IKNPMERMTAKEALK 220
             +P++R T K+ ++
Sbjct: 286 DADPLKRPTFKQIVQ 300

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 24/125 (19%)

Query: 118 NCDIKVCDFEISRVILDGIEIREL-----LGTPDYVGK---------------SLGVTAY 157
              +KV DF ++R + D                 ++                 S GV  +
Sbjct: 166 KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLW 225

Query: 158 VLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAK 216
            L+T G  P+      +    + + +        E       + + K        R +  
Sbjct: 226 ELMTRGAPPYPDVNTFDITVYLLQGR---RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFS 282

Query: 217 EALKH 221
           E +  
Sbjct: 283 ELVSR 287

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 25/141 (17%)

Query: 100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR---ELLGTPDYVGK------ 150
           F+   L  +N ++  DF    +K+ DF ++R I +    R   + L    ++        
Sbjct: 154 FVHRDLAARNCMVAEDF---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG 210

Query: 151 ---------SLGVTAYVLLTGF-SPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF 200
                    S GV  + + T    P+ G ++ +  R + +  L    +  ++      + 
Sbjct: 211 VFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLL---DKPDNCPDMLFEL 267

Query: 201 IAKILIKNPMERMTAKEALKH 221
           +      NP  R +  E +  
Sbjct: 268 MRMCWQYNPKMRPSFLEIISS 288

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/160 (10%), Positives = 43/160 (26%), Gaps = 47/160 (29%)

Query: 105 LQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIREL-----LGTPDYVGK--------- 150
           L+ +N+++  +       + D  ++       +  ++     +GT  Y+           
Sbjct: 134 LKSKNILVKKNG---TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINM 190

Query: 151 ------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFE------- 191
                       ++G+  + +    S  G   D +             +E+ +       
Sbjct: 191 KHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL 250

Query: 192 -----------DISPEAKDFIAKILIKNPMERMTAKEALK 220
                      +        + +    N   R+TA    K
Sbjct: 251 RPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.8
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.37
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.25
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.23
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	96.08
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.66
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	95.23
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.19
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	94.96
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.9
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	94.65
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	94.45
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	94.21
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	93.93
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	93.78
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	93.42
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	93.3
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	93.2
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	92.52
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	92.08
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	91.65
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	90.4
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	89.28
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	88.99
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	88.44
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	87.9
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	87.82
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	87.78
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	87.35
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	86.34
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	86.08
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	86.0
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	84.56
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	84.33
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	84.12
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	83.44
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	82.65
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	82.06
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	81.83
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	81.05
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	80.19

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-49  Score=369.83  Aligned_cols=214  Identities=29%  Similarity=0.441  Sum_probs=173.2

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .++||+|+||+||+|+++.||+.||+ |....    .....+.+|+.+|+.++|||||++++++.+   +|++|||  +|
T Consensus        14 ~~~lG~G~fg~Vy~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg   92 (307)
T d1a06a_          14 RDVLGTGAFSEVILAEDKRTQKLVAI-KCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGG   92 (307)
T ss_dssp             EEESBSGGGGGEEEEEETTTCCEEEE-EEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEE-EEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            45899999999999999999999884 54432    223567899999999999999999998775   8999999  78


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      +|++.                    .|+.|||+      +||+||||||+||++.....++.+||+|||+|+........
T Consensus        93 ~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~------~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~  166 (307)
T d1a06a_          93 ELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD------LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL  166 (307)
T ss_dssp             BHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEESSSSTTCCEEECCC------------
T ss_pred             cHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhh------ceeeeEEecccceeecccCCCceEEEeccceeEEccCCCee
Confidence            88887                    77888888      99999999999999976544689999999999887666667


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      .+.+||+.|+||               |+||++|+|++|++||.+.+..+....+..+...++.+.++.+|+++++||.+
T Consensus       167 ~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  246 (307)
T d1a06a_         167 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRH  246 (307)
T ss_dssp             ------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHH
Confidence            778999999999               99999999999999999999999999999998888887788999999999999


Q ss_pred             hcccCCCCCCCHHHHhcCccccCCc
Q psy6046         204 ILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      ||..||++|||++|+++||||++..
T Consensus       247 ~L~~dP~~R~s~~eil~hp~~~~~~  271 (307)
T d1a06a_         247 LMEKDPEKRFTCEQALQHPWIAGDT  271 (307)
T ss_dssp             HSCSSGGGSCCHHHHHHSTTTTSSC
T ss_pred             HccCCHhHCcCHHHHhcCHhhCCCC
Confidence            9999999999999999999998643

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-49  Score=362.58  Aligned_cols=209  Identities=27%  Similarity=0.373  Sum_probs=183.6

Q ss_pred             CCccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEE
Q psy6046           3 TDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         3 ~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v   73 (379)
                      .|+-..+.||+|+||+||+|+++.+|+.||+ |....      .....+.+|+.+|+.++|||||++++++.+   +|++
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILAL-KVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEE-EEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            3444556899999999999999999999884 54332      234568999999999999999999999776   8999


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |||  +|+|++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.
T Consensus        85 mEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~------~~ivHrDiKp~Nill~~~---~~~kl~DFG~a~~  155 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHS------KRVIHRDIKPENLLLGSA---GELKIADFGWSVH  155 (263)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEECCCCSCSC
T ss_pred             EeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCeeeeeeccccceecCC---CCEeecccceeee
Confidence            999  7888776                    67888888      999999999999999986   8999999999987


Q ss_pred             eccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         132 ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      .... .....+||+.|+||               |+||++|+|++|++||.+.+..+.+..+.++.+.+|.    .+|++
T Consensus       156 ~~~~-~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~  230 (263)
T d2j4za1         156 APSS-RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD----FVTEG  230 (263)
T ss_dssp             CCCC-CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT----TSCHH
T ss_pred             cCCC-cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCc----cCCHH
Confidence            6543 34567899999999               9999999999999999999999999999998877765    58999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                      +++||.+||..||++|||++|+|+||||+.
T Consensus       231 ~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         231 ARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence            999999999999999999999999999964

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=6.8e-49  Score=372.47  Aligned_cols=215  Identities=25%  Similarity=0.435  Sum_probs=191.4

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      .+.||+|+||.||+|+++.||+.||++++...  .+.+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|+|
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L  110 (350)
T d1koaa2          31 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL  110 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBH
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCH
Confidence            45799999999999999999999985444322  334668999999999999999999999765   8999999  7888


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ++.                     .|+.|||+      +||+||||||+|||++.+. ++.+||+|||+|+.........
T Consensus       111 ~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~------~~iiHrDiKp~NIll~~~~-~~~vkL~DFG~a~~~~~~~~~~  183 (350)
T d1koaa2         111 FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE------NNYVHLDLKPENIMFTTKR-SNELKLIDFGLTAHLDPKQSVK  183 (350)
T ss_dssp             HHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSTT-SCCEEECCCTTCEECCTTSCEE
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh------cCCeeeeechhHeeeccCC-CCeEEEeecchheecccccccc
Confidence            776                     67888888      9999999999999997542 3789999999999887766677


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      +.+||+.||||               |+||++|+|++|++||.+.+..+.+..+..+...++...+..+|+++++||.+|
T Consensus       184 ~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  263 (350)
T d1koaa2         184 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKL  263 (350)
T ss_dssp             EECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHH
T ss_pred             eecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            78999999999               999999999999999999999999999999998888888888999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCcc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      |..||++|||++|+|+||||+....
T Consensus       264 L~~dP~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         264 LLADPNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             CCSSGGGSCCHHHHHHSTTTSCTTC
T ss_pred             ccCChhHCcCHHHHhcCcccCCCCC
Confidence            9999999999999999999987654

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-49  Score=359.04  Aligned_cols=207  Identities=20%  Similarity=0.312  Sum_probs=170.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||+||+|+++.||+.||+ |....    ...+.+.+|+.+|+.++|||||++++++.+   +|++|||  +|+
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAi-K~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~   89 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAV-KIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   89 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEE-EEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCc
Confidence            4899999999999999999999985 54332    223568999999999999999999999765   8999999  788


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc---
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI---  136 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~---  136 (379)
                      |++.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......   
T Consensus        90 L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~------~~IiHrDiKp~NILl~~~---~~~KL~DFG~a~~~~~~~~~~  160 (271)
T d1nvra_          90 LFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG------IGITHRDIKPENLLLDER---DNLKISDFGLATVFRYNNRER  160 (271)
T ss_dssp             GGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECTT---CCEEECCCTTCEECEETTEEC
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------cCCccCcccHHHEEECCC---CCEEEccchhheeeccCCccc
Confidence            8877                    78888888      999999999999999875   899999999998765332   


Q ss_pred             cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChH-HHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         137 EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDS-ETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       137 ~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      .....+||+.|+||                |+||++|+|++|++||.+.+.. .....+.......  ..+..+|+++++
T Consensus       161 ~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  238 (271)
T d1nvra_         161 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL--NPWKKIDSAPLA  238 (271)
T ss_dssp             CBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTS--TTGGGSCHHHHH
T ss_pred             cccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC--CccccCCHHHHH
Confidence            34567899999999                9999999999999999775543 2333333332222  234578999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||.+||..||++|||++|+|+||||++.
T Consensus       239 li~~~L~~dP~~R~t~~eil~hpwf~~~  266 (271)
T d1nvra_         239 LLHKILVENPSARITIPDIKKDRWYNKP  266 (271)
T ss_dssp             HHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             HHHHHcCCChhHCcCHHHHhcCHhhCcC
Confidence            9999999999999999999999999753

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-48  Score=359.81  Aligned_cols=213  Identities=23%  Similarity=0.353  Sum_probs=183.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      -..++||+|+||+||+|+++.||+.||+ |+...      ...+.+.+|+.+|+.++||||+++++++.+   +|++|||
T Consensus        11 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy   89 (288)
T d1uu3a_          11 KFGKILGEGSFSTVVLARELATSREYAI-KILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSY   89 (288)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEE-EEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEc
Confidence            3446899999999999999999999984 55432      334568999999999999999999998765   8999999


Q ss_pred             --CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 --RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 --~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                        +|+|++.                    .|+.|||+      +||+||||||+|||++++   +.+||+|||+|+.+..
T Consensus        90 ~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~------~~iiHrDiKp~NIll~~~---~~vkl~DFG~a~~~~~  160 (288)
T d1uu3a_          90 AKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHG------KGIIHRDLKPENILLNED---MHIQITDFGTAKVLSP  160 (288)
T ss_dssp             CTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---SCEEECCCTTCEECC-
T ss_pred             cCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhcc------ccEEcCcCCccccccCCC---ceEEecccccceeccc
Confidence              7888876                    67888888      999999999999999986   8999999999987653


Q ss_pred             Cc---cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         135 GI---EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       135 ~~---~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..   ...+.+||+.|+||               |+||++|+|++|++||.+.+..+++.++.++.+.+|.    .+|++
T Consensus       161 ~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~  236 (288)
T d1uu3a_         161 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPE----KFFPK  236 (288)
T ss_dssp             ---------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCT----TCCHH
T ss_pred             CCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCc----cCCHH
Confidence            32   34567899999999               9999999999999999999999999999998887765    58999


Q ss_pred             HHHHHHHhcccCCCCCCCHHH------HhcCccccCCccccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKE------ALKHPWLMNKKQIMT  232 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e------~l~hp~~~~~~~~~~  232 (379)
                      +++||.+||..||.+|||++|      +++||||++.+|...
T Consensus       237 ~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~~l  278 (288)
T d1uu3a_         237 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL  278 (288)
T ss_dssp             HHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTG
T ss_pred             HHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHHHh
Confidence            999999999999999999987      688999998876544

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-48  Score=357.11  Aligned_cols=210  Identities=20%  Similarity=0.202  Sum_probs=178.5

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc--cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN--VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||+||+|+++.||+.||+++...  ....+.+.+|+.+|+.++|||||++++++.+   +|++|||  +|+|+
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~  105 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  105 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHH
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHH
Confidence            479999999999999999999998543322  2345679999999999999999999998765   8999999  78888


Q ss_pred             HH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccccc
Q psy6046          82 QA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIREL  141 (379)
Q Consensus        82 ~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~~~  141 (379)
                      ..                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.+.... .....
T Consensus       106 ~~~~~~~l~~~~~~~i~~qi~~aL~yLH~------~~iiHrDiKp~NILl~~~---~~vkl~DFG~a~~~~~~~~~~~~~  176 (293)
T d1yhwa1         106 DVVTETCMDEGQIAAVCRECLQALEFLHS------NQVIHRDIKSDNILLGMD---GSVKLTDFGFCAQITPEQSKRSTM  176 (293)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECCSTTCCBCCC
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHH------CCCcccCCcHHHeEECCC---CcEeeccchhheeecccccccccc
Confidence            77                   77888888      999999999999999875   899999999998875443 45667


Q ss_pred             ccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcc
Q psy6046         142 LGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKILI  206 (379)
Q Consensus       142 ~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  206 (379)
                      +||+.|+||               |+||++|+|++|++||.+.+..+.+..+....... ...+..+|+++++||.+||.
T Consensus       177 ~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~  255 (293)
T d1yhwa1         177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPE-LQNPEKLSAIFRDFLNRCLD  255 (293)
T ss_dssp             CSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCC-CSSGGGSCHHHHHHHHHHTC
T ss_pred             ccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCC-CCCcccCCHHHHHHHHHHcc
Confidence            899999999               99999999999999999988877777766543221 12335789999999999999


Q ss_pred             cCCCCCCCHHHHhcCccccCCc
Q psy6046         207 KNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       207 ~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      .||.+|||++|+|+||||+...
T Consensus       256 ~dP~~R~s~~eil~Hp~~~~~~  277 (293)
T d1yhwa1         256 MDVEKRGSAKELLQHQFLKIAK  277 (293)
T ss_dssp             SSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CChhHCcCHHHHhcCHhhCCCC
Confidence            9999999999999999997543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-48  Score=359.11  Aligned_cols=217  Identities=30%  Similarity=0.467  Sum_probs=189.9

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc---------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV---------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      ..+.||+|+||+||+|+++.||+.||+ |....         ...+.+.+|+.+|+.|+|||||++++++.+   +|++|
T Consensus        14 ~~~~lG~G~fg~Vy~~~~~~~~~~~Av-K~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (293)
T d1jksa_          14 TGEELGSGQFAVVKKCREKSTGLQYAA-KFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIL   92 (293)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEE-EEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            345899999999999999999999985 44321         124568999999999999999999999776   89999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCC-CCcEEEeeccccee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFP-NCDIKVCDFEISRV  131 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~-~~~ikl~DFG~a~~  131 (379)
                      ||  +|+|++.                    .|+.|||+      +||+||||||+||+++.++. ...+||+|||+|+.
T Consensus        93 E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~------~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          93 ELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHS------LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhh------cceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            99  7888876                    67888888      99999999999999987632 24699999999998


Q ss_pred             eccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         132 ILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       132 ~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ...+....+.+||+.|+||               |+||++|+|++|+.||.+.+..+.+..+..+...++...++.+|++
T Consensus       167 ~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  246 (293)
T d1jksa_         167 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSAL  246 (293)
T ss_dssp             CTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHH
T ss_pred             cCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHH
Confidence            8777667778999999999               9999999999999999999999999999999988888888899999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                      +++||.+||..||++|||++|+|+||||+...+.
T Consensus       247 ~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~~~  280 (293)
T d1jksa_         247 AKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQ  280 (293)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHSTTTCC----
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcCcccCCCChh
Confidence            9999999999999999999999999999876543

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.4e-48  Score=367.93  Aligned_cols=212  Identities=26%  Similarity=0.446  Sum_probs=190.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc---ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV---SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l   80 (379)
                      +.||+|+||+||+|+++.||+.||+ |+...   .+...+.+|+.+|+.|+|||||++++++.+   +|++|||  +|+|
T Consensus        35 ~~lG~G~fg~V~~a~~~~~~~~vAi-K~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L  113 (352)
T d1koba_          35 EELGSGAFGVVHRCVEKATGRVFVA-KFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL  113 (352)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEE-EEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEE-EEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChH
Confidence            4899999999999999999999885 54433   234568899999999999999999999765   8999999  7888


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      ++.                     .|+.|||+      +||+||||||+|||++... .+.+||+|||+|+.........
T Consensus       114 ~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~------~~iiHRDiKp~NILl~~~~-~~~vkL~DFGla~~~~~~~~~~  186 (352)
T d1koba_         114 FDRIAAEDYKMSEAEVINYMRQACEGLKHMHE------HSIVHLDIKPENIMCETKK-ASSVKIIDFGLATKLNPDEIVK  186 (352)
T ss_dssp             HHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSTT-CCCEEECCCTTCEECCTTSCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCeeecccccccccccccC-CCeEEEeecccceecCCCCcee
Confidence            876                     67888888      9999999999999998431 3789999999999887776677


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHh
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAKI  204 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  204 (379)
                      ..+||+.|+||               |+||++|+|+||.+||.+.+..+.+..+..+...++...+..+|+++++||.+|
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  266 (352)
T d1koba_         187 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNL  266 (352)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTT
T ss_pred             eccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            78999999999               999999999999999999999999999999998888888889999999999999


Q ss_pred             cccCCCCCCCHHHHhcCccccCCc
Q psy6046         205 LIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       205 L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |..||.+|||++|+|+||||++..
T Consensus       267 L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         267 LQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             SCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             ccCChhHCcCHHHHhcCHhhCCCc
Confidence            999999999999999999998754

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-48  Score=363.37  Aligned_cols=215  Identities=24%  Similarity=0.318  Sum_probs=188.8

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEe
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~   74 (379)
                      |+-..++||+|+||+||+|+++.||+.||+ |++..      .....+.+|+.+|+.++||||+++++++.+   +|++|
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~~Ai-K~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           6 DFDYLKLLGKGTFGKVILVREKATGRYYAM-KILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcEEEEEEecCcCeEEEEEEECCCCCEEEE-EEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            344456899999999999999999999985 54432      334678999999999999999999998876   89999


Q ss_pred             eC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceee
Q psy6046          75 NP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVI  132 (379)
Q Consensus        75 e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~  132 (379)
                      ||  +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+..
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~------~~iiHRDlKP~NILl~~~---g~vkl~DFG~a~~~  155 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHS------RDVVYRDIKLENLMLDKD---GHIKITDFGLCKEG  155 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCBCS
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhh------cCccccccCHHHeEecCC---CCEEEeeccccccc
Confidence            99  8888777                    67888888      999999999999999986   89999999999876


Q ss_pred             cc-CccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         133 LD-GIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       133 ~~-~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      .. .......+||+.|+||               |+||++|+|++|++||.+.+..++...+..+.+.+|.    .+|++
T Consensus       156 ~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~----~~s~~  231 (337)
T d1o6la_         156 ISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR----TLSPE  231 (337)
T ss_dssp             CCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSCHH
T ss_pred             ccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCc----cCCHH
Confidence            43 3456678999999999               9999999999999999999999999999999888775    58999


Q ss_pred             HHHHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         197 AKDFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      +++||.+||+.||++|++     ++|+++||||++.+|...
T Consensus       232 ~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l  272 (337)
T d1o6la_         232 AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDV  272 (337)
T ss_dssp             HHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHHHhhccCCchhhcccccccHHHHHcCcccccCCHHHH
Confidence            999999999999999994     999999999998776543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=351.33  Aligned_cols=206  Identities=17%  Similarity=0.241  Sum_probs=172.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc-------ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v~e~-   76 (379)
                      +.||+|+||+||+|+++.|++.||+++....    ...+.+.+|+++|+.++|||||++++++.+       +|++||| 
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~   94 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELM   94 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECC
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCC
Confidence            3799999999999999999999986444332    234568999999999999999999998643       6899999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCC--eEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMD--FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~--ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                       +|+|.+.                    .|++|||+      +|  |+||||||+|||++++  ++.+||+|||+|+...
T Consensus        95 ~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~------~~~~IiHrDiKp~NILl~~~--~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          95 TSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT------RTPPIIHRDLKCDNIFITGP--TGSVKIGDLGLATLKR  166 (270)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHT------SSSCCCCSCCCGGGEEESST--TSCEEECCTTGGGGCC
T ss_pred             CCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHH------CCCCEEeCCcChhhceeeCC--CCCEEEeecCcceecc
Confidence             7888776                    67888888      88  9999999999999754  4789999999997543


Q ss_pred             cCccccccccCCCCcch--------------HHHHHHHHHhhCCCCCCCCC-hHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         134 DGIEIRELLGTPDYVGK--------------SLGVTAYVLLTGFSPFGGET-DSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP--------------SlGvil~~lltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                      . ....+.+||+.|+||              |+||++|+|++|++||.+.. ..++...+..+..  |......++++++
T Consensus       167 ~-~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~  243 (270)
T d1t4ha_         167 A-SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK--PASFDKVAIPEVK  243 (270)
T ss_dssp             T-TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC--CGGGGGCCCHHHH
T ss_pred             C-CccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCC--CcccCccCCHHHH
Confidence            3 345677899999999              99999999999999997654 4555666665533  3344567899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         199 DFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      +||.+||..||++|||++|+|+||||+
T Consensus       244 ~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         244 EIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             HHHHHHccCCHhHCcCHHHHhCCcccC
Confidence            999999999999999999999999995

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=354.14  Aligned_cols=209  Identities=21%  Similarity=0.142  Sum_probs=179.2

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecc--cccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERN--VSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||+||+|+++.+|+.||++....  ....+.+.+|+++|+.|+|||||++++++.+   +|++|||  +|+|.
T Consensus        18 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~   97 (288)
T d2jfla1          18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVD   97 (288)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHH
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHH
Confidence            479999999999999999999888543322  2445679999999999999999999998765   8999999  77877


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-ccc
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EIR  139 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~~  139 (379)
                      ..                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+...... ...
T Consensus        98 ~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~------~~ivHrDiKp~NIll~~~---~~~Kl~DFG~a~~~~~~~~~~~  168 (288)
T d2jfla1          98 AVMLELERPLTESQIQVVCKQTLDALNYLHD------NKIIHRDLKAGNILFTLD---GDIKLADFGVSAKNTRTIQRRD  168 (288)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECHHHHHHHT
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------CCEEEeecChhheeECCC---CCEEEEechhhhccCCCccccc
Confidence            65                     67888888      999999999999999985   899999999998764332 345


Q ss_pred             ccccCCCCcch--------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHH
Q psy6046         140 ELLGTPDYVGK--------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKD  199 (379)
Q Consensus       140 ~~~gt~~y~aP--------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  199 (379)
                      +.+||+.|+||                    |+||++|+|++|++||.+.+..+.+.++..+..+.. ..+..+|+++++
T Consensus       169 ~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~~~  247 (288)
T d2jfla1         169 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTL-AQPSRWSSNFKD  247 (288)
T ss_dssp             CCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCC-SSGGGSCHHHHH
T ss_pred             ccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCC-CccccCCHHHHH
Confidence            67899999999                    999999999999999999998888888888764432 223578999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         200 FIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       200 li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ||.+||+.||++|||++|+|+||||+..
T Consensus       248 li~~~L~~dp~~R~t~~ell~hp~~~~~  275 (288)
T d2jfla1         248 FLKKCLEKNVDARWTTSQLLQHPFVTVD  275 (288)
T ss_dssp             HHHHHSCSSTTTSCCHHHHTTSGGGCCC
T ss_pred             HHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            9999999999999999999999999743

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-48  Score=360.83  Aligned_cols=214  Identities=29%  Similarity=0.437  Sum_probs=190.8

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      -..+.||+|+||+||+|+++.||+.|| +|......  ...+.+|+.+|+.++|||||++++++.+   +|++|||  +|
T Consensus         8 ~i~~~lG~G~fg~Vy~~~~~~~~~~~A-iK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg   86 (321)
T d1tkia_           8 MIAEDLGRGEFGIVHRCVETSSKKTYM-AKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEE-EEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEE-EEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCC
Confidence            345689999999999999999999888 45554432  3458899999999999999999998765   8999999  77


Q ss_pred             hhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          79 PVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        79 ~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      +|++.                     .|+.|||+      +||+||||||+|||++.++ ...+||+|||+++.......
T Consensus        87 ~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~------~~iiHrDlKp~NIll~~~~-~~~ikl~DFG~~~~~~~~~~  159 (321)
T d1tkia_          87 DIFERINTSAFELNEREIVSYVHQVCEALQFLHS------HNIGHFDIRPENIIYQTRR-SSTIKIIEFGQARQLKPGDN  159 (321)
T ss_dssp             BHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEESSSS-CCCEEECCCTTCEECCTTCE
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH------cCCCcccccccceeecCCC-ceEEEEcccchhhccccCCc
Confidence            88876                     67888888      9999999999999998642 36899999999998776666


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....+||+.|+||               |+||++|+|++|.+||.+.+..+.+..|.++.+.++...++.+|+++++||.
T Consensus       160 ~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  239 (321)
T d1tkia_         160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVD  239 (321)
T ss_dssp             EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             ccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHH
Confidence            7778899999999               9999999999999999999999999999999999998888899999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCccccCC
Q psy6046         203 KILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      +||..||.+|||++|+|+||||++.
T Consensus       240 ~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         240 RLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             TTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             HHccCChhHCcCHHHHhcCHhhccC
Confidence            9999999999999999999999764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-47  Score=356.83  Aligned_cols=215  Identities=21%  Similarity=0.355  Sum_probs=186.8

Q ss_pred             CCCccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceE
Q psy6046           2 ITDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         2 ~~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~   72 (379)
                      |.|+-..+.||+|+||+||+|+++.+|+.||+ |+...      ...+.+.+|+.+|+.++|||||++++++.+   +|+
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAv-K~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   81 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAM-KVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEE-EEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence            34444556899999999999999999999885 54432      334678999999999999999999999765   899


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|||  +|.+...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+
T Consensus        82 vmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~------~~iiHrDiKp~NILl~~~---g~vkL~DFG~a~  152 (316)
T d1fota_          82 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHS------KDIIYRDLKPENILLDKN---GHIKITDFGFAK  152 (316)
T ss_dssp             EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEECTT---SCEEECCCSSCE
T ss_pred             EeeecCCccccccccccccccccHHHHHHHHHHHhhhhhcc------CcEEccccCchheeEcCC---CCEEEecCccce
Confidence            9999  6776666                    67888887      999999999999999875   899999999998


Q ss_pred             eeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         131 VILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ....  ...+.+||+.|+||               |+||++|+|++|+.||.+.+..+...++..+...+|+    .+|+
T Consensus       153 ~~~~--~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~  226 (316)
T d1fota_         153 YVPD--VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP----FFNE  226 (316)
T ss_dssp             ECSS--CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT----TSCH
T ss_pred             Eecc--ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCC----CCCH
Confidence            7643  34567899999999               9999999999999999999999999999998877765    5899


Q ss_pred             HHHHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         196 EAKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +++++|.+||..||.+|+     |++++++||||++..|...
T Consensus       227 ~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l  268 (316)
T d1fota_         227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKL  268 (316)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHH
T ss_pred             HHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHHHH
Confidence            999999999999999996     9999999999999876643

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=351.70  Aligned_cols=205  Identities=21%  Similarity=0.309  Sum_probs=166.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----ceEEeeC
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----PLLGLNP   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~v~e~   76 (379)
                      ..+.||+|+||+||+|+++.||+.||+ |....     ...+.+.+|+++|+.++|||||++++++.+     +|++|||
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy   86 (269)
T d2java1           8 VLYTIGTGSYGRCQKIRRKSDGKILVW-KELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY   86 (269)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEE-EEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEEC
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEE-EEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEec
Confidence            345899999999999999999999885 54332     223568999999999999999999997632     7999999


Q ss_pred             --CchhhHH------------------------HHHHHHhcccCCCCCC-----eEeCCCCCCcEEEeecCCCCcEEEee
Q psy6046          77 --RPPVYQA------------------------SATTKAGSVLFPPLMD-----FIFFFLQPQNLVMMGDFPNCDIKVCD  125 (379)
Q Consensus        77 --~g~l~~~------------------------~al~~lh~~~~~h~~~-----ivHrDlkp~Nill~~~~~~~~ikl~D  125 (379)
                        +|+|.+.                        .|+.|||+      +|     |+||||||+|||++.+   +.+||+|
T Consensus        87 ~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~------~~~~~~~IiHrDiKp~NIll~~~---~~vkl~D  157 (269)
T d2java1          87 CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR------RSDGGHTVLHRDLKPANVFLDGK---QNVKLGD  157 (269)
T ss_dssp             CTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH------HCC---------CCGGGEEECTT---SCEEECC
T ss_pred             CCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH------hcCCCCCEEeCcCchhhcCcCCC---CcEEEee
Confidence              7888765                        67888887      66     9999999999999985   8999999


Q ss_pred             cccceeeccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc
Q psy6046         126 FEISRVILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       126 FG~a~~~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~  189 (379)
                      ||+|+...... .....+||+.|+||               |+||++|+|+||++||.+.+..++...+..+.....   
T Consensus       158 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~---  234 (269)
T d2java1         158 FGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRI---  234 (269)
T ss_dssp             HHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCC---
T ss_pred             ccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCC---
Confidence            99998765443 34568899999999               999999999999999999999999999988876432   


Q ss_pred             ccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccc
Q psy6046         190 FEDISPEAKDFIAKILIKNPMERMTAKEALKHPWL  224 (379)
Q Consensus       190 ~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  224 (379)
                      +..+|+++.+||.+||..||.+|||++|+|+|||+
T Consensus       235 ~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         235 PYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             CcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence            24689999999999999999999999999999996

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.6e-47  Score=348.14  Aligned_cols=211  Identities=26%  Similarity=0.387  Sum_probs=187.5

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc------------cchHHHHHHHHHHhCC-CCCcceeeeecCc---c
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS------------QGVVIVDEEQLLKLIK-VEPIEKYYSLDPE---P   70 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~------------~~~~~~~E~~il~~l~-hpnIv~~~~~~~~---~   70 (379)
                      ..+.||+|+||+||+|+++.+|+.||+ |.....            ..+.+.+|+.+|+.|+ ||||+++++++.+   .
T Consensus         7 ~~~~iG~G~~g~V~~~~~~~~~~~~Av-K~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~   85 (277)
T d1phka_           7 PKEILGRGVSSVVRRCIHKPTCKEYAV-KIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   85 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEE-EEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             EceEEecCcCeEEEEEEECCCCCEEEE-EEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcce
Confidence            345899999999999999999999885 443221            1235889999999998 9999999999876   7


Q ss_pred             eEEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccc
Q psy6046          71 LLGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEI  128 (379)
Q Consensus        71 ~~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~  128 (379)
                      |++|||  +|+|++.                    .|+.|||+      +||+||||||+||+++.+   +.+||+|||+
T Consensus        86 ~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~------~~ivHrDlkp~Nill~~~---~~~kl~DFG~  156 (277)
T d1phka_          86 FLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHK------LNIVHRDLKPENILLDDD---MNIKLTDFGF  156 (277)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---CCEEECCCTT
T ss_pred             EEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH------cCCcccccccceEEEcCC---CCeEEccchh
Confidence            999999  7888877                    67888888      999999999999999875   8999999999


Q ss_pred             ceeeccCccccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc
Q psy6046         129 SRVILDGIEIRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD  187 (379)
Q Consensus       129 a~~~~~~~~~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~  187 (379)
                      ++...........+||+.|+||                     |+||++|+|++|+.||.+.+..+....+..+...++.
T Consensus       157 a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~  236 (277)
T d1phka_         157 SCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS  236 (277)
T ss_dssp             CEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT
T ss_pred             eeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCC
Confidence            9988766666778899999999                     9999999999999999999999999999999888777


Q ss_pred             ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         188 ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       188 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      ..+..+|+++++||.+||..||++|||++|+|+||||++.
T Consensus       237 ~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         237 PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHHh
Confidence            7777899999999999999999999999999999999753

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-47  Score=361.19  Aligned_cols=214  Identities=24%  Similarity=0.339  Sum_probs=181.0

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHH-hCCCCCcceeeeecCc-------ceEEeeC-
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLK-LIKVEPIEKYYSLDPE-------PLLGLNP-   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~-~l~hpnIv~~~~~~~~-------~~~v~e~-   76 (379)
                      +.+++||+|+||+||+|+++.||+.||+ |....  ...+.+|+.++. .++|||||++++++.+       +|++||| 
T Consensus        15 i~~~~lG~G~fg~Vy~a~~~~~~~~vAi-K~i~~--~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~   91 (335)
T d2ozaa1          15 VTSQVLGLGINGKVLQIFNKRTQEKFAL-KMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL   91 (335)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEE-EEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EeeEEeeeccCeEEEEEEECCCCCEEEE-EEECC--cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECC
Confidence            3456899999999999999999999885 55432  466889999865 5589999999998753       7999999 


Q ss_pred             -CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 -RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 -~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                       +|+|++.                      .|+.|||+      +||+||||||+|||++.....+.+||+|||+|+...
T Consensus        92 ~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~------~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          92 DGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS------INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             CSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             CCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH------cCCccccccccccccccccccccccccccceeeecc
Confidence             7888887                      67888888      999999999999999986556789999999999887


Q ss_pred             cCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHH----HHHHHhCCCCCCcccccCCC
Q psy6046         134 DGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSET----FRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       134 ~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ........+||+.|+||               |+||++|+|+||++||.+.+..+.    ...+..+.+.+|...+..+|
T Consensus       166 ~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s  245 (335)
T d2ozaa1         166 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVS  245 (335)
T ss_dssp             CCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSC
T ss_pred             CCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCC
Confidence            76677788999999999               999999999999999987664433    34455566677777777899


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +++++||.+||..||++|||+.|+|+||||.+..
T Consensus       246 ~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  279 (335)
T d2ozaa1         246 EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  279 (335)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTTT
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHcCHHhhCCC
Confidence            9999999999999999999999999999997644

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-46  Score=351.52  Aligned_cols=204  Identities=17%  Similarity=0.184  Sum_probs=174.4

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      .||+|+||+||+|+++.||+.||+ |....      ...+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|
T Consensus        22 ~lG~G~fg~Vy~a~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g  100 (309)
T d1u5ra_          22 EIGHGSFGAVYFARDVRNSEVVAI-KKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGS  100 (309)
T ss_dssp             EEEECSSSEEEEEEETTTTEEEEE-EEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             EEecCCCeEEEEEEECCCCcEEEE-EEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCC
Confidence            699999999999999999998885 44332      123468899999999999999999998764   8999999  55


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCccc
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEI  138 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~  138 (379)
                      .+...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....   .
T Consensus       101 ~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~------~~iiHrDiKp~NILl~~~---~~~Kl~DFG~a~~~~~---~  168 (309)
T d1u5ra_         101 ASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS------HNMIHRDVKAGNILLSEP---GLVKLGDFGSASIMAP---A  168 (309)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCSGGGEEEETT---TEEEECCCTTCBSSSS---B
T ss_pred             chHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh------CCEeccCCCcceEEECCC---CCEEEeecccccccCC---C
Confidence            55443                    68888888      999999999999999975   8999999999986533   3


Q ss_pred             cccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         139 RELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       139 ~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                      ...+||+.|+||                  |+||++|+|++|.+||.+.+..+.+..+..+..+.+.  ...+|+++++|
T Consensus       169 ~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~s~~~~~l  246 (309)
T d1u5ra_         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ--SGHWSEYFRNF  246 (309)
T ss_dssp             CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCS--CTTSCHHHHHH
T ss_pred             CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCCCHHHHHH
Confidence            457899999999                  9999999999999999999988888888777654332  24689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         201 IAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      |.+||..||.+|||++|+|+||||....
T Consensus       247 i~~~L~~dP~~Rpt~~ell~Hp~~~~~~  274 (309)
T d1u5ra_         247 VDSCLQKIPQDRPTSEVLLKHRFVLRER  274 (309)
T ss_dssp             HHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             HHHHCcCChhHCcCHHHHHhCHHhcCCC
Confidence            9999999999999999999999997543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-46  Score=353.80  Aligned_cols=208  Identities=19%  Similarity=0.308  Sum_probs=183.0

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      +.||+|+||.||+|+++.||+.||+ |+...      ...+.+.+|+.+|+.++|||||++++++.+   +|+++||  +
T Consensus        47 ~~lG~G~fg~Vy~a~~~~~g~~~Av-K~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~  125 (350)
T d1rdqe_          47 KTLGTGSFGRVMLVKHKESGNHYAM-KILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG  125 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEE-EEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccc
Confidence            3899999999999999999999985 54432      334668999999999999999999998765   7899999  7


Q ss_pred             chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc
Q psy6046          78 PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE  137 (379)
Q Consensus        78 g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~  137 (379)
                      |.++..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....  .
T Consensus       126 g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~------~~iiHRDIKP~NILl~~~---g~ikL~DFG~a~~~~~--~  194 (350)
T d1rdqe_         126 GEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHS------LDLIYRDLKPENLLIDQQ---GYIQVTDFGFAKRVKG--R  194 (350)
T ss_dssp             CBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---SCEEECCCTTCEECSS--C
T ss_pred             cchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHh------CCEecCcCCHHHcccCCC---CCEEeeeceeeeeccc--c
Confidence            777766                    67888888      999999999999999875   8999999999988643  3


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ..+.+||+.||||               |+||++|+|+||++||.+.+....+.++..+...+|.    .+|+++.+||.
T Consensus       195 ~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~----~~s~~~~~li~  270 (350)
T d1rdqe_         195 TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS----HFSSDLKDLLR  270 (350)
T ss_dssp             BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TCCHHHHHHHH
T ss_pred             cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCc----cCCHHHHHHHH
Confidence            4567899999999               9999999999999999999999999999998877664    58999999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         203 KILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       203 ~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                      +||..||.+|+     |++++++||||++.+|...
T Consensus       271 ~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~  305 (350)
T d1rdqe_         271 NLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI  305 (350)
T ss_dssp             HHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHH
T ss_pred             HHhhhCHHhccccccccHHHHHcCccccCCCHHHH
Confidence            99999999995     9999999999998876543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-46  Score=346.63  Aligned_cols=210  Identities=18%  Similarity=0.171  Sum_probs=172.7

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccc--------cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVS--------QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~--------~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-   76 (379)
                      ++||+|+||+||+|+++.+|+.||+ |.+...        ....+.+|+.+|+.++|||||++++++.+   +|++||| 
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAI-KKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEE-EEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEE-EEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            4799999999999999999999885 544321        13468899999999999999999999875   8999999 


Q ss_pred             -CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 -RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 -~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                       +|.+...                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.....
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~------~~iiHrDiKp~NIli~~~---~~~KL~DFG~a~~~~~~  153 (299)
T d1ua2a_          83 ETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ------HWILHRDLKPNNLLLDEN---GVLKLADFGLAKSFGSP  153 (299)
T ss_dssp             SEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECCCGGGSTTTSC
T ss_pred             cchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc------cceecccCCcceEEecCC---CccccccCccccccCCC
Confidence             3333322                    78888888      999999999999999975   89999999999876543


Q ss_pred             c-cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC------------
Q psy6046         136 I-EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP------------  186 (379)
Q Consensus       136 ~-~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~------------  186 (379)
                      . .....+||+.|+||                |+||++|+|++|.+||.+.+..+.+.+|.......+            
T Consensus       154 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~  233 (299)
T d1ua2a_         154 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPD  233 (299)
T ss_dssp             CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTT
T ss_pred             cccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccch
Confidence            3 34567899999999                999999999999999999999888887754211110            


Q ss_pred             ------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         187 ------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       187 ------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                  ...++.+|+++++||.+||..||++|||++|+|+||||++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p  287 (299)
T d1ua2a_         234 YVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRP  287 (299)
T ss_dssp             CCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSS
T ss_pred             hhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCC
Confidence                        112246789999999999999999999999999999998654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-47  Score=355.38  Aligned_cols=209  Identities=21%  Similarity=0.257  Sum_probs=165.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      +.||+|+||+||+|+++.||+.||+ |....    .....+.+|+.+|+.++|||||++++++.+   +|++|||  +|+
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAi-K~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~   90 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMAR-KLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   90 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEE-EEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEE-EEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCc
Confidence            4899999999999999999998885 44332    224578999999999999999999999765   8999999  788


Q ss_pred             hhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          80 VYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        80 l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      |++.                    .|+.|||+     .+||+||||||+|||++.+   +.+||+|||+|+..... ...
T Consensus        91 L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~-----~~~IiHRDiKP~NILl~~~---~~vkl~DFGla~~~~~~-~~~  161 (322)
T d1s9ja_          91 LDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE-----KHKIMHRDVKPSNILVNSR---GEIKLCDFGVSGQLIDS-MAN  161 (322)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH-----HHCCCCSCCSGGGEEECTT---CCEEECCCCCCHHHHHH-TC-
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-----hCCEEccccCHHHeeECCC---CCEEEeeCCCccccCCC-ccc
Confidence            8776                    67888885     1499999999999999886   89999999999876433 346


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHH-----------------------------
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETF-----------------------------  175 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~-----------------------------  175 (379)
                      +.+||+.|+||               |+||++|+|++|+.||.+.+..+..                             
T Consensus       162 ~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (322)
T d1s9ja_         162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYG  241 (322)
T ss_dssp             --CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC--------------------------
T ss_pred             cccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccc
Confidence            68999999999               9999999999999999775432211                             


Q ss_pred             -------------HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         176 -------------RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       176 -------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                   ..+.....  |......+|+++++||.+||..||.+|||++|+|+||||++..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~  306 (322)
T d1s9ja_         242 MDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA  306 (322)
T ss_dssp             ----CCCCHHHHHHHHHTSCC--CCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred             cccccchhHHHHHhhhhccCC--ccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCc
Confidence                         11111110  11111246899999999999999999999999999999986553

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-45  Score=352.51  Aligned_cols=217  Identities=17%  Similarity=0.179  Sum_probs=173.4

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHH---HHHHHhCCCCCcceeeeecCc---ce
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDE---EQLLKLIKVEPIEKYYSLDPE---PL   71 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E---~~il~~l~hpnIv~~~~~~~~---~~   71 (379)
                      |+-..++||+|+||.||+|+++.||+.||+ |+...      .....+.+|   +.+++.++|||||++++++.+   +|
T Consensus         5 dy~i~~~lG~G~fg~Vy~~~~~~t~~~vAi-K~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           5 DFSVHRIIGRGGFGEVYGCRKADTGKMYAM-KCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEE-EEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             hCeeeeEEecCCCeEEEEEEECCCCCEEEE-EEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            333456999999999999999999999984 55432      112234444   667778889999999998765   89


Q ss_pred             EEeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccc
Q psy6046          72 LGLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEIS  129 (379)
Q Consensus        72 ~v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a  129 (379)
                      ++|||  +|+|+..                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~------~~iiHrDlKP~NILl~~~---g~iKl~DFGla  154 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHN------RFVVYRDLKPANILLDEH---GHVRISDLGLA  154 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECSS---SCEEECCCTTC
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH------CCccceeeccceeEEcCC---CcEEEeeecee
Confidence            99999  7888876                    67888888      999999999999999886   89999999999


Q ss_pred             eeeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         130 RVILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       130 ~~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      +..... .....+||+.|+||                |+||++|+|+||++||.+.+..+..... ......+...+..+
T Consensus       155 ~~~~~~-~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~-~~~~~~~~~~~~~~  232 (364)
T d1omwa3         155 CDFSKK-KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID-RMTLTMAVELPDSF  232 (364)
T ss_dssp             EECSSS-CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHH-HHSSSCCCCCCSSS
T ss_pred             eecCCC-cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHH-HhcccCCCCCCCCC
Confidence            877544 45567899999999                9999999999999999875543322211 11222223334578


Q ss_pred             CHHHHHHHHHhcccCCCCCCC-----HHHHhcCccccCCccccc
Q psy6046         194 SPEAKDFIAKILIKNPMERMT-----AKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt-----~~e~l~hp~~~~~~~~~~  232 (379)
                      |+++++||.+||..||++|||     ++|+++||||++.+|...
T Consensus       233 s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~  276 (364)
T d1omwa3         233 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMV  276 (364)
T ss_dssp             CHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHH
T ss_pred             CHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHH
Confidence            999999999999999999999     799999999999877654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=346.56  Aligned_cols=215  Identities=20%  Similarity=0.288  Sum_probs=184.6

Q ss_pred             CCccCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHH-hCCCCCcceeeeecCc---ceE
Q psy6046           3 TDPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLK-LIKVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         3 ~d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~-~l~hpnIv~~~~~~~~---~~~   72 (379)
                      -|+-..+.||+|+||+||+|+++.||+.||+ |+...      ...+.+.+|+.++. .++|||||++++++.+   +|+
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAv-K~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAI-KALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEE-EEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEE-EEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            3455567999999999999999999999885 54432      33455777777765 7999999999999775   899


Q ss_pred             EeeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +|||  +|+|...                    .|+.|||+      +||+||||||+|||++..   +.+||+|||+|+
T Consensus        81 vmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~------~~iiHrDikp~NiL~~~~---~~~kl~DFG~a~  151 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS------KGIVYRDLKLDNILLDKD---GHIKIADFGMCK  151 (320)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH------TTCBCCCCCGGGEEECTT---SCEEECCCTTCB
T ss_pred             EEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeccCcccceeecCC---Cceeccccchhh
Confidence            9999  7888887                    67888888      999999999999999975   899999999998


Q ss_pred             eeccCc-cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         131 VILDGI-EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       131 ~~~~~~-~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ...... .....+||+.|+||               |+||++|+|++|+.||.+.+..+++.++..+.+.+|.    .+|
T Consensus       152 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~----~~s  227 (320)
T d1xjda_         152 ENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR----WLE  227 (320)
T ss_dssp             CCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TSC
T ss_pred             hcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc----cCC
Confidence            765433 34557899999999               9999999999999999999999999999988877664    589


Q ss_pred             HHHHHHHHHhcccCCCCCCCHH-HHhcCccccCCcccc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAK-EALKHPWLMNKKQIM  231 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~-e~l~hp~~~~~~~~~  231 (379)
                      +++++||.+||..||++|||+. ++++||||++.++..
T Consensus       228 ~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~~~~~  265 (320)
T d1xjda_         228 KEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEE  265 (320)
T ss_dssp             HHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHHH
T ss_pred             HHHHHHHHHhcccCCCCCcCHHHHHHhCchhccCCHHH
Confidence            9999999999999999999996 899999999877643

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-45  Score=341.02  Aligned_cols=213  Identities=19%  Similarity=0.212  Sum_probs=174.8

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cc
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RP   78 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g   78 (379)
                      -+.||+|+||+||+|+++.+|+.||+ |+...     ...+.+.+|+++|+.++|||||++++++.+   +|++||| .|
T Consensus         7 ~~~lG~G~fg~Vy~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~   85 (298)
T d1gz8a_           7 VEKIGEGTYGVVYKARNKLTGEVVAL-KKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ   85 (298)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEE-EEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             ccEEecCcCeEEEEEEECCCCCEEEE-EEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCC
Confidence            35899999999999999999999884 44332     225678999999999999999999999875   8999999 44


Q ss_pred             hhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC-
Q psy6046          79 PVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG-  135 (379)
Q Consensus        79 ~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~-  135 (379)
                      .++..                      .|++|||+      +||+||||||+|||++.+   +.+||+|||+|+..... 
T Consensus        86 ~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~------~~IiHrDiKpeNIl~~~~---~~~kl~DFG~a~~~~~~~  156 (298)
T d1gz8a_          86 DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS------HRVLHRDLKPQNLLINTE---GAIKLADFGLARAFGVPV  156 (298)
T ss_dssp             EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECSTTHHHHHCCCS
T ss_pred             chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc------CCEEccccCchheeeccc---CcceeccCCcceeccCCc
Confidence            44433                      67888888      999999999999999875   89999999999876433 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD------------  187 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~------------  187 (379)
                      ......+||+.|+||                |+||++|+|++|++||.+.+..+.+.++.......+.            
T Consensus       157 ~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (298)
T d1gz8a_         157 RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY  236 (298)
T ss_dssp             BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccc
Confidence            345567899999999                9999999999999999998888777766432111110            


Q ss_pred             -------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccc
Q psy6046         188 -------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQI  230 (379)
Q Consensus       188 -------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  230 (379)
                                   .....+|+++++||.+||..||++|||++|+|+||||++..+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         237 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence                         1224678999999999999999999999999999999877643

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=331.18  Aligned_cols=203  Identities=20%  Similarity=0.258  Sum_probs=168.0

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--------ccchHHHHHHHHHHhCC--CCCcceeeeecCc---ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--------SQGVVIVDEEQLLKLIK--VEPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--------~~~~~~~~E~~il~~l~--hpnIv~~~~~~~~---~~~v   73 (379)
                      ..++||+|+||+||+|+++.||+.||++.+...        ....++.+|+.+|+.++  |||||++++++.+   .|++
T Consensus         8 i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv   87 (273)
T d1xwsa_           8 VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLI   87 (273)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEE
Confidence            345899999999999999999999985433221        11244779999999998  8999999998765   7999


Q ss_pred             eeC--C-chhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          74 LNP--R-PPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        74 ~e~--~-g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ||+  + +.++..                    .|+.|||+      +||+||||||+|||++.+  .+.+||+|||+|+
T Consensus        88 ~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~------~~iiHrDiKp~NIll~~~--~~~vkl~DFG~a~  159 (273)
T d1xwsa_          88 LERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN------CGVLHRDIKDENILIDLN--RGELKLIDFGSGA  159 (273)
T ss_dssp             EECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEETT--TTEEEECCCTTCE
T ss_pred             EEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH------CCCccccCcccceEEecC--CCeEEECccccce
Confidence            999  3 455544                    67888888      999999999999999864  3789999999998


Q ss_pred             eeccCccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         131 VILDGIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       131 ~~~~~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ..... ...+.+||+.|+||                |+||++|+|++|+.||.+.      ..+.++...++.    .+|
T Consensus       160 ~~~~~-~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~------~~i~~~~~~~~~----~~s  228 (273)
T d1xwsa_         160 LLKDT-VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD------EEIIRGQVFFRQ----RVS  228 (273)
T ss_dssp             ECCSS-CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH------HHHHHCCCCCSS----CCC
T ss_pred             ecccc-cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc------hHHhhcccCCCC----CCC
Confidence            75433 45678899999999                9999999999999999763      235556665554    589


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                      +++++||.+||..||++|||++|+|+||||++..
T Consensus       229 ~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         229 SECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL  262 (273)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence            9999999999999999999999999999998653

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-44  Score=333.35  Aligned_cols=212  Identities=19%  Similarity=0.234  Sum_probs=171.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhC---CCCCcceeeeecC--------cceE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLI---KVEPIEKYYSLDP--------EPLL   72 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l---~hpnIv~~~~~~~--------~~~~   72 (379)
                      ..||+|+||+||+|++..++..+||+|....     .....+.+|+.+|+.|   +||||+++++++.        .+|+
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~   92 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL   92 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEE
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEE
Confidence            4799999999999999877655444565432     2234578899888776   7999999999863        2789


Q ss_pred             EeeC--CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccc
Q psy6046          73 GLNP--RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEIS  129 (379)
Q Consensus        73 v~e~--~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a  129 (379)
                      ++|+  +|.+...                     .|++|||+      +||+||||||+|||++..   +.+||+|||++
T Consensus        93 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~------~~ivHrDiKp~NILi~~~---~~~kl~dfg~~  163 (305)
T d1blxa_          93 VFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS------HRVVHRDLKPQNILVTSS---GQIKLADFGLA  163 (305)
T ss_dssp             EEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECSCCSC
T ss_pred             EEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHh------CCEEecCCCccEEEEcCC---CCeeecchhhh
Confidence            9999  3333211                     78888888      999999999999999986   89999999999


Q ss_pred             eeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCC----------
Q psy6046         130 RVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLD----------  184 (379)
Q Consensus       130 ~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~----------  184 (379)
                      +...........+||+.|+||               |+||++|+|++|++||.+.+..+.+..+......          
T Consensus       164 ~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  243 (305)
T d1blxa_         164 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV  243 (305)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTC
T ss_pred             hhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccc
Confidence            887666667788999999999               9999999999999999999988888776542110          


Q ss_pred             -------------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         185 -------------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       185 -------------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                   .....+..+|+.+++||.+||..||++|||++|+|+||||++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~  301 (305)
T d1blxa_         244 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  301 (305)
T ss_dssp             SSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             cchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchh
Confidence                         011233568999999999999999999999999999999987653

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-44  Score=338.51  Aligned_cols=210  Identities=21%  Similarity=0.242  Sum_probs=171.5

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEeeC-Cch
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLNP-RPP   79 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e~-~g~   79 (379)
                      +||+|+||+||+|+++.+|+.||++++...  .....+|+.+|+.|+||||+++++++..         +|++||| .|.
T Consensus        27 ~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~  104 (350)
T d1q5ka_          27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQD--KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET  104 (350)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEECC--SSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEE
T ss_pred             EEeeCcCeEEEEEEECCCCCEEEEEEECcc--chHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCc
Confidence            799999999999999999999985444332  2334689999999999999999988632         5899999 433


Q ss_pred             hhHH------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          80 VYQA------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        80 l~~~------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      ++..                        .|+.|||+      +||+||||||+|||++.+  +..+||+|||+++.....
T Consensus       105 ~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~------~~IiHrDiKp~NILl~~~--~~~~kl~DFG~a~~~~~~  176 (350)
T d1q5ka_         105 VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS------FGICHRDIKPQNLLLDPD--TAVLKLCDFGSAKQLVRG  176 (350)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEECTT--TCCEEECCCTTCEECCTT
T ss_pred             cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh------cCCcccCCCcceEEEecC--CCceeEecccchhhccCC
Confidence            2221                        67888888      999999999999999875  358999999999988777


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhC-----------------C
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKA-----------------Q  182 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~-----------------~  182 (379)
                      ....+.+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.+.                 .
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  256 (350)
T d1q5ka_         177 EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE  256 (350)
T ss_dssp             SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---C
T ss_pred             cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhh
Confidence            677788999999999                9999999999999999998887777666431                 0


Q ss_pred             CCCC--------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         183 LDFP--------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       183 ~~~~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                      ..++        ....+.+|+++.+||.+||..||++|||+.|+|+||||++...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         257 FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRD  311 (350)
T ss_dssp             CCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGC
T ss_pred             ccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccC
Confidence            1111        1122457999999999999999999999999999999987653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-44  Score=337.80  Aligned_cols=212  Identities=22%  Similarity=0.264  Sum_probs=165.8

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~e   75 (379)
                      .||+|+||+||+|+++.||+.||+ |....     ...+.+.+|+.+|+.++|||||++++++..         +|++||
T Consensus        25 ~lG~G~fg~V~~~~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  103 (346)
T d1cm8a_          25 PVGSGAYGAVCSAVDGRTGAKVAI-KKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMP  103 (346)
T ss_dssp             EC------CEEEEEETTTCCEEEE-EECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEE
T ss_pred             EEecCCCeEEEEEEECCCCCEEEE-EEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEe
Confidence            699999999999999999999985 54432     223568999999999999999999998653         699999


Q ss_pred             C-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          76 P-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        76 ~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      | ++.+...                   .|+.|||+      +||+||||||+|||++.+   +.+|++|||+|+.... 
T Consensus       104 ~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~------~~IiHrDiKp~NIL~~~~---~~~kl~Dfg~a~~~~~-  173 (346)
T d1cm8a_         104 FMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHA------AGIIHRDLKPGNLAVNED---CELKILDFGLARQADS-  173 (346)
T ss_dssp             CCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECCS-
T ss_pred             cccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHh------CCCcccccCcchhhcccc---cccccccccceeccCC-
Confidence            9 4444433                   77888888      999999999999999985   8999999999987643 


Q ss_pred             ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC-------------
Q psy6046         136 IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP-------------  186 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~-------------  186 (379)
                       .....+||+.|+||                |+||++|+|++|++||.+.+..+.+..+.......+             
T Consensus       174 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (346)
T d1cm8a_         174 -EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAK  252 (346)
T ss_dssp             -SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHH
T ss_pred             -ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhh
Confidence             35667899999999                999999999999999999887766655543221111             


Q ss_pred             --------------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcccccc
Q psy6046         187 --------------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMTR  233 (379)
Q Consensus       187 --------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~~  233 (379)
                                    ......+|+++++||.+||..||++|||++|+|+||||++.......
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~~~~~  313 (346)
T d1cm8a_         253 NYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDE  313 (346)
T ss_dssp             HHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-----
T ss_pred             hhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCCcccc
Confidence                          12335679999999999999999999999999999999987654443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.8e-43  Score=326.50  Aligned_cols=208  Identities=19%  Similarity=0.242  Sum_probs=164.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      +.||+|+||+||+|+++ +|+.||++++...    ...+.+.+|+.+|+.++|||||++++++.+   .|+++|+ .|.+
T Consensus         8 ~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~   86 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDL   86 (286)
T ss_dssp             EEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEH
T ss_pred             cEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhh
Confidence            47999999999999986 7788885443222    224679999999999999999999998765   8899999 3333


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-cc
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-EI  138 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~~  138 (379)
                      ...                     .|++|||+      +||+||||||+|||++.+   +.+||+|||.|....... ..
T Consensus        87 ~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~------~~IvHrDiKp~NIll~~~---~~~kl~DfG~a~~~~~~~~~~  157 (286)
T d1ob3a_          87 KKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD------RRVLHRDLKPQNLLINRE---GELKIADFGLARAFGIPVRKY  157 (286)
T ss_dssp             HHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---SCEEECCTTHHHHHCC-----
T ss_pred             HHHHHhhcCCcchhhhHHHHHHHHHHHHHhcc------CcEEecCCCCceeeEcCC---CCEEecccccceecccCcccc
Confidence            222                     78888888      999999999999999885   899999999998764332 34


Q ss_pred             cccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCC----------------
Q psy6046         139 RELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFP----------------  186 (379)
Q Consensus       139 ~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~----------------  186 (379)
                      ....|++.|+||                |+||++|+|++|++||.+.+..+.+.++.......+                
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T d1ob3a_         158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPN  237 (286)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTT
T ss_pred             ceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccc
Confidence            456799999999                999999999999999999888877777643211100                


Q ss_pred             ---------cccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccC
Q psy6046         187 ---------DELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMN  226 (379)
Q Consensus       187 ---------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  226 (379)
                               ......+|+++.|||++||..||++|||++|+|+||||++
T Consensus       238 ~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         238 FTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             CCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             cccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence                     1223567999999999999999999999999999999974

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=329.27  Aligned_cols=214  Identities=22%  Similarity=0.261  Sum_probs=170.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--------ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--------PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--------~~~v~e~   76 (379)
                      ..||+|+||+||+|+++.||+.||+ |.+..    ...+.+++|+.+|+.|+||||+++++++..        +|+++++
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~   92 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAI-KKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHL   92 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEE-EEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEE-EEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEee
Confidence            4899999999999999999999885 44432    223568899999999999999999998643        4666666


Q ss_pred             -CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          77 -RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        77 -~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                       +|+|++.                   .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......
T Consensus        93 ~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~------~~iiHRDIKp~NILl~~~---~~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_          93 MGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHS------ANVLHRDLKPSNLLLNTT---CDLKICDFGLARVADPDH  163 (345)
T ss_dssp             CCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---CCEEECCCTTCEECCGGG
T ss_pred             cCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH------CCCcCCCCCcceEEECCC---CCEEEcccCceeeccCCC
Confidence             8888877                   67888888      999999999999999975   899999999998764332


Q ss_pred             ----cccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCC-----------
Q psy6046         137 ----EIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDF-----------  185 (379)
Q Consensus       137 ----~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~-----------  185 (379)
                          .....+||+.|+||                |+||++|+|++|++||.+.+..+............           
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T d1pmea_         164 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINL  243 (345)
T ss_dssp             CBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCH
T ss_pred             ccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhh
Confidence                24557799999999                99999999999999999887665554432211000           


Q ss_pred             ----------------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         186 ----------------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       186 ----------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                      ....++.+|+++++||.+||..||++|||++|+|+||||+.......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~~~  306 (345)
T d1pmea_         244 KARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSD  306 (345)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCGGG
T ss_pred             hhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCCcc
Confidence                            01234578999999999999999999999999999999997765443

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.5e-43  Score=331.69  Aligned_cols=212  Identities=22%  Similarity=0.271  Sum_probs=172.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCC-CCCcceeeeecCc-----ceEEeeC--Cchh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIK-VEPIEKYYSLDPE-----PLLGLNP--RPPV   80 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~-hpnIv~~~~~~~~-----~~~v~e~--~g~l   80 (379)
                      +.||+|+||+||+|+++.+|+.|| +|++.......+.+|+.+|+.++ ||||+++++++..     +|++|||  +|+|
T Consensus        41 ~~LG~G~fg~V~~a~~~~~~~~vA-iK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L  119 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITNNEKVV-VKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDF  119 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEE-EEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBG
T ss_pred             EEEecCcCeEEEEEEECCCCCEEE-EEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcH
Confidence            379999999999999999998888 56666666788999999999996 9999999998642     7899999  5665


Q ss_pred             hHH-----------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccccccc
Q psy6046          81 YQA-----------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIRELLG  143 (379)
Q Consensus        81 ~~~-----------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~~~~g  143 (379)
                      ...                 .|+.|||+      +||+||||||+|||++.+  ++.+||+|||+|+...........+|
T Consensus       120 ~~~~~~l~e~~i~~i~~qil~aL~~LH~------~gIvHrDiKp~NILi~~~--~~~vkl~DFG~a~~~~~~~~~~~~~~  191 (328)
T d3bqca1         120 KQLYQTLTDYDIRFYMYEILKALDYCHS------MGIMHRDVKPHNVMIDHE--HRKLRLIDWGLAEFYHPGQEYNVRVA  191 (328)
T ss_dssp             GGTTTSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEETT--TTEEEECCGGGCEECCTTCCCCSCCS
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHhh------cccccccccccceEEcCC--CCeeeecccccceeccCCCccccccc
Confidence            554                 77888888      999999999999999875  35799999999998877667778899


Q ss_pred             CCCCcch----------------HHHHHHHHHhhCCCCCCCCCh-HHHHHHHHh-------------CCCC---------
Q psy6046         144 TPDYVGK----------------SLGVTAYVLLTGFSPFGGETD-SETFRNISK-------------AQLD---------  184 (379)
Q Consensus       144 t~~y~aP----------------SlGvil~~lltg~~Pf~~~~~-~~~~~~i~~-------------~~~~---------  184 (379)
                      |+.|+||                |+||++|+|++|+.||..... .+....+..             ....         
T Consensus       192 t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  271 (328)
T d3bqca1         192 SRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL  271 (328)
T ss_dssp             CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTC
T ss_pred             CccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhc
Confidence            9999999                999999999999999975432 222222211             1110         


Q ss_pred             -----------CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         185 -----------FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       185 -----------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                 ++......+|++++|||++||..||++|||++|+|+||||++..|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         272 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             CCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             ccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence                       111122457999999999999999999999999999999987654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-42  Score=319.09  Aligned_cols=203  Identities=14%  Similarity=0.155  Sum_probs=169.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|+++ ++..||+ |....  ...+.+.+|+.+|+.++|||||++++++.+  +|++|||  +|+|.+
T Consensus        19 ~~iG~G~fg~Vy~~~~~-~~~~vAv-K~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~   96 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYN-GHTKVAV-KSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVD   96 (272)
T ss_dssp             EEEEEETTEEEEEEEET-TTEEEEE-EEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHH
T ss_pred             EEEecCCCcEEEEEEEC-CCCEEEE-EEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHH
Confidence            37999999999999975 5666774 54433  334679999999999999999999998765  8999999  788877


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......  ..
T Consensus        97 ~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~------~~ivHrDiKp~NIll~~~---~~~Kl~DFGla~~~~~~~~~~~  167 (272)
T d1qpca_          97 FLKTPSGIKLTINKLLDMAAQIAEGMAFIEE------RNYIHRDLRAANILVSDT---LSCKIADFGLARLIEDNEYTAR  167 (272)
T ss_dssp             HTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECTT---SCEEECCCTTCEECSSSCEECC
T ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh------CCcccCccchhheeeecc---cceeeccccceEEccCCccccc
Confidence            5                      67888888      999999999999999985   899999999999875543  23


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....||+.|+||               |+||++|||+| |.+||...+..+.+..+..+.....   +..+|+++.+||.
T Consensus       168 ~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~---p~~~~~~l~~li~  244 (272)
T d1qpca_         168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVR---PDNCPEELYQLMR  244 (272)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHH
T ss_pred             cccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCC---cccChHHHHHHHH
Confidence            446789999999               99999999999 5667778888888888877643322   2468999999999


Q ss_pred             HhcccCCCCCCCHHHHhc--Ccccc
Q psy6046         203 KILIKNPMERMTAKEALK--HPWLM  225 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~--hp~~~  225 (379)
                      +||..||++|||++++++  |+||.
T Consensus       245 ~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         245 LCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            999999999999999998  78884

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-43  Score=331.80  Aligned_cols=211  Identities=19%  Similarity=0.244  Sum_probs=159.4

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecC---------cceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP---------EPLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~---------~~~~v~   74 (379)
                      ++||+|+||+||+|+++.||+.||+ |+...     .....+.+|+.+|+.++|||||++++++.         .+|++|
T Consensus        23 ~~LG~G~fg~V~~~~d~~t~~~vAv-K~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~  101 (355)
T d2b1pa1          23 KPIGSGAQGIVCAAYDAVLDRNVAI-KKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM  101 (355)
T ss_dssp             EECSCC--CEEEEEEETTTTEEEEE-EEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEE-EEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEE
Confidence            3899999999999999999999885 44432     22356889999999999999999999873         379999


Q ss_pred             eC-CchhhHH------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          75 NP-RPPVYQA------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        75 e~-~g~l~~~------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      || .|.++..                  .|+.|||+      +||+||||||+|||++.+   +.+|++|||+++.....
T Consensus       102 Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~------~giiHrDlKP~Nil~~~~---~~~kl~df~~~~~~~~~  172 (355)
T d2b1pa1         102 ELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS------AGIIHRDLKPSNIVVKSD---CTLKILDFGLARTAGTS  172 (355)
T ss_dssp             ECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCCCC-------
T ss_pred             eccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhh------cccccccCCccccccccc---cceeeechhhhhccccc
Confidence            99 5555544                  77888888      999999999999999986   88999999999887766


Q ss_pred             ccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-------------
Q psy6046         136 IEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-------------  187 (379)
Q Consensus       136 ~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-------------  187 (379)
                      ......+||+.|+||               |+||++|+|++|++||.+.+......++.......+.             
T Consensus       173 ~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  252 (355)
T d2b1pa1         173 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNY  252 (355)
T ss_dssp             --------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHH
T ss_pred             cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHH
Confidence            667778899999999               9999999999999999988877666555321111000             


Q ss_pred             -------------------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCcc
Q psy6046         188 -------------------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQ  229 (379)
Q Consensus       188 -------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  229 (379)
                                               ......|+++++||++||..||++||||+|+|+||||+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         253 VENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYD  319 (355)
T ss_dssp             HHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             hhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCCC
Confidence                                     001124678999999999999999999999999999987543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-42  Score=324.73  Aligned_cols=209  Identities=17%  Similarity=0.196  Sum_probs=168.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc-----------ceE
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-----------PLL   72 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----------~~~   72 (379)
                      +.||+|+||+||+|+++.+|+.||+ |....     .....+.+|+.+|+.++||||+++++++..           +|+
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~i   94 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKTGQKVAL-KKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL   94 (318)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEE-EEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEE
Confidence            3899999999999999999998885 44322     234568999999999999999999987532           689


Q ss_pred             EeeC-CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          73 GLNP-RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        73 v~e~-~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      ++|+ .+.++..                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+++
T Consensus        95 v~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~------~~ivHrDlKp~NILl~~~---~~~kl~dfg~~~  165 (318)
T d3blha1          95 VFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR------NKILHRDMKAANVLITRD---GVLKLADFGLAR  165 (318)
T ss_dssp             EEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCCGGGEEECTT---SCEEECCCTTCE
T ss_pred             EEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhcc------CCEEecCcCchheeecCC---CcEEeeecceee
Confidence            9999 3222222                     67888888      999999999999999985   899999999998


Q ss_pred             eeccC-----ccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCccc
Q psy6046         131 VILDG-----IEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDEL  189 (379)
Q Consensus       131 ~~~~~-----~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~  189 (379)
                      .....     ....+.+||+.|+||                |+||++|+|++|++||.+.+..+....+......++...
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  245 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV  245 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred             ecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhh
Confidence            76432     123456899999999                999999999999999999888887777655433332221


Q ss_pred             cc----------------------------CCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCC
Q psy6046         190 FE----------------------------DISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNK  227 (379)
Q Consensus       190 ~~----------------------------~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  227 (379)
                      +.                            ..+++++|||.+||..||++|||++|+|+||||+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~  311 (318)
T d3blha1         246 WPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSD  311 (318)
T ss_dssp             STTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSS
T ss_pred             ccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccC
Confidence            11                            137889999999999999999999999999999854

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=319.37  Aligned_cols=202  Identities=13%  Similarity=0.102  Sum_probs=165.7

Q ss_pred             CcCCCCceEEEEEEEcC--CCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--Cc
Q psy6046          10 VGGNRARSSCSRKPEKT--TKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RP   78 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~--tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g   78 (379)
                      .||+|+||+||+|.++.  +++.|| +|....     ...+.+.+|+.+|++++|||||++++++.+  +|++|||  +|
T Consensus        14 ~iG~G~fG~Vy~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          14 ELGSGNFGTVKKGYYQMKKVVKTVA-VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEE-EEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CcccCCCeEEEEEEEccCCcCeEEE-EEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            69999999999998654  445566 454432     123568999999999999999999998754  8999999  78


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      +|.+.                    .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....... 
T Consensus        93 ~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~------~~iiHrDlKp~Nill~~~---~~~kl~DFGla~~~~~~~~~  163 (277)
T d1xbba_          93 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE------SNFVHRDLAARNVLLVTQ---HYAKISDFGLSKALRADENY  163 (277)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEEEET---TEEEECCCTTCEECCTTCSE
T ss_pred             cHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHh------CCcccCCCcchhhccccc---Ccccccchhhhhhccccccc
Confidence            88776                    67888888      999999999999999986   8999999999987654322 


Q ss_pred             ---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHH
Q psy6046         138 ---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAK  198 (379)
Q Consensus       138 ---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  198 (379)
                         .....||+.|+||               |+||++|||+| |++||.+.+..++...+.++....   .+..+|+++.
T Consensus       164 ~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~---~p~~~~~~~~  240 (277)
T d1xbba_         164 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG---CPAGCPREMY  240 (277)
T ss_dssp             EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC---CCTTCCHHHH
T ss_pred             cccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCC---CCcccCHHHH
Confidence               2335689999999               99999999998 899999999988888888765322   2246899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHh---cCccc
Q psy6046         199 DFIAKILIKNPMERMTAKEAL---KHPWL  224 (379)
Q Consensus       199 ~li~~~L~~dP~~Rpt~~e~l---~hp~~  224 (379)
                      +||.+||..||++|||+++++   +|+|+
T Consensus       241 ~li~~cl~~dp~~RPs~~~i~~~L~~~~~  269 (277)
T d1xbba_         241 DLMNLCWTYDVENRPGFAAVELRLRNYYY  269 (277)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHhHCcCHHHHHHHhhCHHh
Confidence            999999999999999999984   56655

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=320.35  Aligned_cols=205  Identities=15%  Similarity=0.146  Sum_probs=168.8

Q ss_pred             ccC-cCCCCceEEEEEEEcCCCc--EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           8 SHV-GGNRARSSCSRKPEKTTKR--EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         8 ~~~-lG~G~fG~V~~a~~~~tg~--~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      .++ ||+|+||+||+|.++.++.  .|| +|....    ...+.+.+|+++|+.++|||||++++++.+  +|++|||  
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~~~vA-vK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~   91 (285)
T d1u59a_          13 ADIELGCGNFGSVRQGVYRMRKKQIDVA-IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAG   91 (285)
T ss_dssp             EEEEEECCTTEEEEEEEEC---CCEEEE-EEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCT
T ss_pred             CCcEEecccCeEEEEEEEecCCCcEEEE-EEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCC
Confidence            345 9999999999998765543  455 565433    234568999999999999999999998764  8999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|.+.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.....
T Consensus        92 ~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~------~~iiHrDlKp~Nill~~~---~~~Kl~DFGla~~~~~~  162 (285)
T d1u59a_          92 GGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE------KNFVHRDLAARNVLLVNR---HYAKISDFGLSKALGAD  162 (285)
T ss_dssp             TEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEEET---TEEEECCCTTCEECTTC
T ss_pred             CCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHh------CCeecCcCchhheeeccC---Cceeeccchhhhccccc
Confidence            7888776                     67888888      999999999999999986   89999999999887543


Q ss_pred             cc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         136 IE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       136 ~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ..    ....+||+.|+||               |+||++|||+| |++||.+.+..++...+..+....   .++.+|+
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~---~p~~~~~  239 (285)
T d1u59a_         163 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME---CPPECPP  239 (285)
T ss_dssp             SCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCC---CCTTCCH
T ss_pred             ccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC---CCCcCCH
Confidence            22    2345689999999               99999999998 999999988888888888775322   2246899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHH---hcCcccc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEA---LKHPWLM  225 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~---l~hp~~~  225 (379)
                      ++.+||.+||..||++|||+.++   |+|+|+.
T Consensus       240 ~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         240 ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999887   6678874

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-42  Score=322.76  Aligned_cols=201  Identities=13%  Similarity=0.123  Sum_probs=156.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCcE--EEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--C
Q psy6046           9 HVGGNRARSSCSRKPEKTTKRE--VVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--R   77 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~--~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~   77 (379)
                      ++||+|+||+||+|+++.+|+.  ++++|....    ...+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~  111 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMEN  111 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCC
Confidence            4899999999999999888753  233555433    234568999999999999999999999764   8999999  7


Q ss_pred             chhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc
Q psy6046          78 PPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI  136 (379)
Q Consensus        78 g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~  136 (379)
                      |+|...                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......
T Consensus       112 g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~------~~iiHrDlKp~NILl~~~---~~~Kl~DFGla~~~~~~~  182 (299)
T d1jpaa_         112 GSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRFLEDDT  182 (299)
T ss_dssp             EEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCC----------
T ss_pred             CcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhh------CCCccCccccceEEECCC---CcEEECCcccceEccCCC
Confidence            777765                     67888888      999999999999999975   899999999998765432


Q ss_pred             cc------cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         137 EI------RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       137 ~~------~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ..      ....||+.|+||               |+||++|||+| |++||.+.+..++...+..+....+   +..+|
T Consensus       183 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~---~~~~~  259 (299)
T d1jpaa_         183 SDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPP---PMDCP  259 (299)
T ss_dssp             -------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCC---CTTCC
T ss_pred             CcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---Cccch
Confidence            21      224578999999               99999999998 8999999999999988887643222   23689


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +++.+||.+||..||++|||+.|++++
T Consensus       260 ~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         260 SALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            999999999999999999999999874

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-43  Score=320.29  Aligned_cols=203  Identities=17%  Similarity=0.190  Sum_probs=161.1

Q ss_pred             cCccCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--
Q psy6046           6 MASHVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--   76 (379)
Q Consensus         6 ~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--   76 (379)
                      -..+.||+|+||+||+|+..   ..|| +|....     ...+.+.+|+.+|+.++|||||+++++..+  +|++|||  
T Consensus        11 ~~~~~lG~G~fg~Vy~~~~~---~~vA-vK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~   86 (276)
T d1uwha_          11 TVGQRIGSGSFGTVYKGKWH---GDVA-VKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCE   86 (276)
T ss_dssp             CCCSEEEECSSCEEEEEESS---SEEE-EEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCC
T ss_pred             EEEEEEeeCCCcEEEEEEEC---CEEE-EEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCC
Confidence            34568999999999999743   3466 555432     234678999999999999999999998765  8999999  


Q ss_pred             CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccC
Q psy6046          77 RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDG  135 (379)
Q Consensus        77 ~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~  135 (379)
                      +|+|++.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.....
T Consensus        87 ~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~------~~ivHrDlKp~NiLl~~~---~~~Kl~DFGla~~~~~~  157 (276)
T d1uwha_          87 GSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA------KSIIHRDLKSNNIFLHED---LTVKIGDFGLATVKSRW  157 (276)
T ss_dssp             EEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEETT---SSEEECCCCCSCC----
T ss_pred             CCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhc------CCEeccccCHHHEEEcCC---CCEEEccccceeecccc
Confidence            6888876                     67888888      999999999999999985   89999999999876432


Q ss_pred             c---cccccccCCCCcch------------------HHHHHHHHHhhCCCCCCCCChHHHHHH-HHhCCCCC-CcccccC
Q psy6046         136 I---EIRELLGTPDYVGK------------------SLGVTAYVLLTGFSPFGGETDSETFRN-ISKAQLDF-PDELFED  192 (379)
Q Consensus       136 ~---~~~~~~gt~~y~aP------------------SlGvil~~lltg~~Pf~~~~~~~~~~~-i~~~~~~~-~~~~~~~  192 (379)
                      .   ...+..||+.||||                  |+||++|||+||+.||.+.+....... +..+.... .......
T Consensus       158 ~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~  237 (276)
T d1uwha_         158 SGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSN  237 (276)
T ss_dssp             --------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTT
T ss_pred             CCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhcccc
Confidence            2   34567899999999                  999999999999999998766554444 44443222 2334567


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +|+++.+||.+||..||++|||++|++++
T Consensus       238 ~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         238 CPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            89999999999999999999999999986

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-42  Score=319.96  Aligned_cols=199  Identities=17%  Similarity=0.101  Sum_probs=164.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||+||+|+++.+|+.||+ |....  ...+.+.+|+.+|+.|+|||||++++++.+   +|++|||  +|++.
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAv-K~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~  101 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAV-KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL  101 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEE-EECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEE-EEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchH
Confidence            4799999999999999999998885 54433  345679999999999999999999998765   8999999  77777


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--  137 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--  137 (379)
                      ..                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+.......  
T Consensus       102 ~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~------~~iiHrDlKp~NILl~~~---~~~Kl~DFG~a~~~~~~~~~~  172 (287)
T d1opja_         102 DYLRECNRQEVSAVVLLYMATQISSAMEYLEK------KNFIHRDLAARNCLVGEN---HLVKVADFGLSRLMTGDTYTA  172 (287)
T ss_dssp             HHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GCEEECCCCCTTTCCSSSSEE
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHHHH------CCcccCccccCeEEECCC---CcEEEccccceeecCCCCcee
Confidence            66                      67888888      999999999999999986   8999999999987654332  


Q ss_pred             ccccccCCCCcch---------------HHHHHHHHHhhCCCC-CCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Q psy6046         138 IRELLGTPDYVGK---------------SLGVTAYVLLTGFSP-FGGETDSETFRNISKAQLDFPDELFEDISPEAKDFI  201 (379)
Q Consensus       138 ~~~~~gt~~y~aP---------------SlGvil~~lltg~~P-f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  201 (379)
                      .....||+.|+||               |+||++|+|++|..| |.+.+..++...+..+. ..  ..+..+|+++.+||
T Consensus       173 ~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~l~~li  249 (287)
T d1opja_         173 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY-RM--ERPEGCPEKVYELM  249 (287)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-CC--CCCTTCCHHHHHHH
T ss_pred             eccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC-CC--CCCccchHHHHHHH
Confidence            2334588999999               999999999996555 55666666666665543 22  22347899999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy6046         202 AKILIKNPMERMTAKEALK  220 (379)
Q Consensus       202 ~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+||..||++|||++|+++
T Consensus       250 ~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         250 RACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHHH
Confidence            9999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.7e-43  Score=320.37  Aligned_cols=209  Identities=22%  Similarity=0.272  Sum_probs=168.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc-------ceEE
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE-------PLLG   73 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~v   73 (379)
                      ..++||+|+||+||+|+++.+|+.||+ |+...      .....+.+|+.+|+.++|||||++++++.+       +|++
T Consensus        11 i~~~lG~G~fg~Vy~a~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lv   89 (277)
T d1o6ya_          11 LGEILGFGGMSEVHLARDLRLHRDVAV-KVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIV   89 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEE-EEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCCCEEEE-EEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEE
Confidence            345899999999999999999999884 54432      123468999999999999999999998653       6899


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      |||  +|+|...                    .|+.|||+      +||+||||||+|||++.+   +.++|+|||.+..
T Consensus        90 mE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~------~~iiHrDiKP~NIll~~~---~~~~l~d~~~~~~  160 (277)
T d1o6ya_          90 MEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQ------NGIIHRDVKPANIMISAT---NAVKVMDFGIARA  160 (277)
T ss_dssp             EECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEEETT---SCEEECCCTTCEE
T ss_pred             EECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHh------CCccCccccCcccccCcc---ccceeehhhhhhh
Confidence            999  6777766                    67888888      999999999999999986   8999999999876


Q ss_pred             eccCc----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCcccccC
Q psy6046         132 ILDGI----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       132 ~~~~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      .....    .....+||+.|+||               |+||++|+|+||++||.+.+..+...++......++...++.
T Consensus       161 ~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
T d1o6ya_         161 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEG  240 (277)
T ss_dssp             CC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSS
T ss_pred             hccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccC
Confidence            54322    34557899999999               999999999999999999999888888888877777677788


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcCcccc
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKHPWLM  225 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  225 (379)
                      +|+++.+||.+||..||.+||+..+.+.|+|.+
T Consensus       241 ~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         241 LSADLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence            999999999999999999999444444566653

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-43  Score=330.18  Aligned_cols=211  Identities=23%  Similarity=0.284  Sum_probs=172.3

Q ss_pred             ccCcCCCCceEEEEEEE---cCCCcEEEEEEeccc-------ccchHHHHHHHHHHhCCC-CCcceeeeecCc---ceEE
Q psy6046           8 SHVGGNRARSSCSRKPE---KTTKREVVQWKERNV-------SQGVVIVDEEQLLKLIKV-EPIEKYYSLDPE---PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~---~~tg~~~a~~k~~~~-------~~~~~~~~E~~il~~l~h-pnIv~~~~~~~~---~~~v   73 (379)
                      .+.||+|+||+||+|++   +.+|+.||+ |....       ...+.+.+|+++|++++| |||+++++++.+   +|++
T Consensus        29 ~~~IG~G~fg~Vy~~~~~~~~~~g~~vAv-K~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v  107 (322)
T d1vzoa_          29 LKVLGTGAYGKVFLVRKISGHDTGKLYAM-KVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLI  107 (322)
T ss_dssp             EEEEEETTTEEEEEEEECSSTTTTCEEEE-EEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEEecCCCeEEEEEEECccCCCCcEEEE-EEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeee
Confidence            35899999999999987   446888885 54332       234568899999999987 899999998765   8899


Q ss_pred             eeC--CchhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          74 LNP--RPPVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        74 ~e~--~g~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      +||  +|+|+..                    .|+.|+|+      +||+||||||+|||++.+   +.+||+|||+|+.
T Consensus       108 ~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~------~~ivHrDiKp~Nill~~~---~~vkL~DFG~a~~  178 (322)
T d1vzoa_         108 LDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHK------LGIIYRDIKLENILLDSN---GHVVLTDFGLSKE  178 (322)
T ss_dssp             ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---SCEEESCSSEEEE
T ss_pred             eecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhc------CCEEeccCCccceeecCC---CCEEEeeccchhh
Confidence            999  7888777                    67888888      999999999999999986   8999999999987


Q ss_pred             eccCc--cccccccCCCCcch-----------------HHHHHHHHHhhCCCCCCCCChHHH----HHHHHhCCCCCCcc
Q psy6046         132 ILDGI--EIRELLGTPDYVGK-----------------SLGVTAYVLLTGFSPFGGETDSET----FRNISKAQLDFPDE  188 (379)
Q Consensus       132 ~~~~~--~~~~~~gt~~y~aP-----------------SlGvil~~lltg~~Pf~~~~~~~~----~~~i~~~~~~~~~~  188 (379)
                      +....  ...+..|++.|+||                 |+||++|+|++|+.||.+.+..+.    .........++|  
T Consensus       179 ~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~--  256 (322)
T d1vzoa_         179 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP--  256 (322)
T ss_dssp             CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCC--
T ss_pred             hcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCc--
Confidence            64432  34567899999999                 999999999999999987654433    333334444433  


Q ss_pred             cccCCCHHHHHHHHHhcccCCCCCC-----CHHHHhcCccccCCccccc
Q psy6046         189 LFEDISPEAKDFIAKILIKNPMERM-----TAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       189 ~~~~~s~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~~  232 (379)
                        ..+|+++.+||.+||..||++||     |++|+++||||++.++...
T Consensus       257 --~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l  303 (322)
T d1vzoa_         257 --QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDL  303 (322)
T ss_dssp             --TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             --ccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHH
Confidence              46899999999999999999999     5899999999998775543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-42  Score=309.88  Aligned_cols=201  Identities=17%  Similarity=0.119  Sum_probs=170.3

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cch
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPP   79 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~   79 (379)
                      ..+.||+|+||+||+|+++ +++.||+ |....  ...+.+.+|+.+++.++||||+++++++.+   ++++|||  +|.
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~-~~~~vAv-K~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~   85 (258)
T d1k2pa_           8 FLKELGTGQFGVVKYGKWR-GQYDVAI-KMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGC   85 (258)
T ss_dssp             CCCCCCEETTEEEEEEEET-TTEEEEE-EEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEE
T ss_pred             EeEEEecCCCeEEEEEEEC-CCCEEEE-EEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCc
Confidence            3458999999999999975 6667774 44433  345679999999999999999999999775   8999999  677


Q ss_pred             hhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc-
Q psy6046          80 VYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE-  137 (379)
Q Consensus        80 l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~-  137 (379)
                      +...                     .|+.|||+      .||+||||||+||+++.+   +.+||+|||+++....... 
T Consensus        86 l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~------~~iiH~dlk~~Nill~~~---~~~kl~DfG~a~~~~~~~~~  156 (258)
T d1k2pa_          86 LLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES------KQFLHRDLAARNCLVNDQ---GVVKVSDFGLSRYVLDDEYT  156 (258)
T ss_dssp             HHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH------TTBCCSCCSGGGEEECTT---CCEEECCCSSCCBCSSSSCC
T ss_pred             HHHhhhccccCCcHHHHHHHHHHHHHHHHHHhh------cCcccccccceeEEEcCC---CcEEECcchhheeccCCCce
Confidence            7666                     67888888      999999999999999985   8999999999987654432 


Q ss_pred             -ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHH
Q psy6046         138 -IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDF  200 (379)
Q Consensus       138 -~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  200 (379)
                       .....||+.|+||               |+||++|||+| |+.||.+.+..++...+..+.....+   ..+++++.+|
T Consensus       157 ~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p---~~~~~~l~~l  233 (258)
T d1k2pa_         157 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP---HLASEKVYTI  233 (258)
T ss_dssp             CCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCC---TTCCHHHHHH
T ss_pred             eecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCc---ccccHHHHHH
Confidence             3346789999999               99999999998 89999999999999999886543332   3689999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q psy6046         201 IAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       201 i~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      |.+||..||++|||++++++|
T Consensus       234 i~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         234 MYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHH
T ss_pred             HHHHccCCHhHCcCHHHHHHH
Confidence            999999999999999999987

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-42  Score=325.11  Aligned_cols=212  Identities=24%  Similarity=0.249  Sum_probs=170.3

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---------ceEEe
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---------PLLGL   74 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---------~~~v~   74 (379)
                      +.||+|+||+||+|+++.+|+.||+ |....     .....+.+|+.+|+.|+|||||++++++..         +|+++
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAi-K~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~  102 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAV-KKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT  102 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEE-EECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEE-EEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEE
Confidence            4799999999999999999998884 54432     223568899999999999999999998642         45555


Q ss_pred             eC-CchhhHH-------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          75 NP-RPPVYQA-------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        75 e~-~g~l~~~-------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                      ++ +|+|++.                   .|+.|||+      +||+||||||+|||++.+   +.+|++|||++.... 
T Consensus       103 ~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~------~giiHrDiKp~NILi~~~---~~~kl~dfg~a~~~~-  172 (348)
T d2gfsa1         103 HLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS------ADIIHRDLKPSNLAVNED---CELKILDFGLARHTD-  172 (348)
T ss_dssp             ECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCCCCCGGGEEECTT---CCEEECCC----CCT-
T ss_pred             eecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHh------CCCcccccCCcccccccc---ccccccccchhcccC-
Confidence            55 8888877                   67888888      999999999999999986   899999999997643 


Q ss_pred             CccccccccCCCCcch----------------HHHHHHHHHhhCCCCCCCCChHHHHHHHHhCCCCCCc-----------
Q psy6046         135 GIEIRELLGTPDYVGK----------------SLGVTAYVLLTGFSPFGGETDSETFRNISKAQLDFPD-----------  187 (379)
Q Consensus       135 ~~~~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf~~~~~~~~~~~i~~~~~~~~~-----------  187 (379)
                       ....+..||+.|+||                |+||++|+|++|++||.+.+.......+.......+.           
T Consensus       173 -~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  251 (348)
T d2gfsa1         173 -DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESA  251 (348)
T ss_dssp             -GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHH
T ss_pred             -cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhh
Confidence             234567899999999                9999999999999999998887777766543222211           


Q ss_pred             ----------------ccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCccccc
Q psy6046         188 ----------------ELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKKQIMT  232 (379)
Q Consensus       188 ----------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~~  232 (379)
                                      ..+..+|+++++||.+||..||.+|||++|+|+||||++......
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~~~~  312 (348)
T d2gfsa1         252 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD  312 (348)
T ss_dssp             HHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTTS
T ss_pred             hhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCCCcc
Confidence                            123468999999999999999999999999999999998764443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-42  Score=312.24  Aligned_cols=199  Identities=16%  Similarity=0.136  Sum_probs=157.9

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cchhh
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RPPVY   81 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g~l~   81 (379)
                      +.||+|+||.||+|+++ +++.||+ |....  ...+.+.+|+.+++.++|||||++++++.+   +|++|||  +|+|.
T Consensus        11 ~~iG~G~fg~Vy~~~~~-~~~~vAv-K~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~   88 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWL-NKDKVAI-KTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS   88 (263)
T ss_dssp             EEEECCSSCCEEEEEET-TTEEEEE-EECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             EEEeeCCCeEEEEEEEC-CCCEEEE-EEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHH
Confidence            47999999999999976 4566774 54443  334679999999999999999999998754   8999999  78887


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcc--c
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIE--I  138 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~--~  138 (379)
                      +.                     .|+.|||+      ++|+||||||+|||++.+   +.+||+|||+++.......  .
T Consensus        89 ~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~------~~iiHrDlKp~Nill~~~---~~~Kl~DFGla~~~~~~~~~~~  159 (263)
T d1sm2a_          89 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEE------ACVIHRDLAARNCLVGEN---QVIKVSDFGMTRFVLDDQYTSS  159 (263)
T ss_dssp             HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH------TTCCCTTCSGGGEEECGG---GCEEECSCC-------------
T ss_pred             HHhhccccCCCHHHHHHHHHHHHHHHHhhhc------cceeecccchhheeecCC---CCeEecccchheeccCCCceee
Confidence            76                     67888888      999999999999999986   8999999999987654332  2


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....||+.|+||               |+||++|||+| |.+||.+.+..+.+..+..+.....+   ..+++++.+||.
T Consensus       160 ~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p---~~~~~~l~~li~  236 (263)
T d1sm2a_         160 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP---RLASTHVYQIMN  236 (263)
T ss_dssp             -----CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCC---TTSCHHHHHHHH
T ss_pred             cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCc---cccCHHHHHHHH
Confidence            346789999999               99999999999 67888888888888888886543322   367999999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q psy6046         203 KILIKNPMERMTAKEALKH  221 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +||..||++|||++|+++|
T Consensus       237 ~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         237 HCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHccCCHhHCcCHHHHHHH
Confidence            9999999999999999985

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-42  Score=322.48  Aligned_cols=201  Identities=13%  Similarity=0.127  Sum_probs=164.1

Q ss_pred             cCcCCCCceEEEEEEEcCCCc-----EEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEee
Q psy6046           9 HVGGNRARSSCSRKPEKTTKR-----EVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLN   75 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~-----~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e   75 (379)
                      ++||+|+||+||+|++..+++     .|| +|....    .....+.+|+.+|+.+ +|||||++++++.+   +|++||
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~va-vK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E  121 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVA-VKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFE  121 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEE-EEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEE-EEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEE
Confidence            489999999999999887654     344 554432    3346789999999998 89999999999775   899999


Q ss_pred             C--CchhhHH-------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          76 P--RPPVYQA-------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        76 ~--~g~l~~~-------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                      |  +|+|.+.                                           .|+.|||+      +||+||||||+||
T Consensus       122 y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~------~~IiHRDlKp~Ni  195 (325)
T d1rjba_         122 YCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF------KSCVHRDLAARNV  195 (325)
T ss_dssp             CCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH------TTEEETTCSGGGE
T ss_pred             cCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh------CCeeeccCchhcc
Confidence            9  7777542                                           57888887      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCcc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~  171 (379)
                      |++.+   +.+||+|||+|+.......   ..+.+||+.||||               |+||++|||+| |.+||.+.+.
T Consensus       196 ll~~~---~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~  272 (325)
T d1rjba_         196 LVTHG---KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV  272 (325)
T ss_dssp             EEETT---TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             ccccC---CeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH
Confidence            99975   8999999999987654432   3356789999999               99999999997 8999998776


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      .+.+.++......++.  +..+|+++++||.+||..||++|||++|+++|
T Consensus       273 ~~~~~~~~~~~~~~~~--p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         273 DANFYKLIQNGFKMDQ--PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             SHHHHHHHHTTCCCCC--CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCC--CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            6666666555444332  24689999999999999999999999999985

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-42  Score=313.18  Aligned_cols=202  Identities=15%  Similarity=0.165  Sum_probs=157.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCc---EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKR---EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~-   76 (379)
                      +.+.||+|+||.||+|++..++.   .|| +|....    ...+.+.+|+.+|+.++|||||++++++.+  +|++||| 
T Consensus        11 l~~~iG~G~fg~Vy~a~~~~~~~~~~~va-ik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~   89 (273)
T d1mp8a_          11 LGRCIGEGQFGDVHQGIYMSPENPALAVA-IKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELC   89 (273)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEE-EEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             EEEEEeeCCCcEEEEEEEecCCceeEEEE-EEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEec
Confidence            34589999999999999877654   344 554432    223568999999999999999999999865  8999999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|.+...                     .|+.|||+      +||+||||||+||+++++   +.+||+|||+|+....
T Consensus        90 ~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~------~~iiHrDlKp~NIll~~~---~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          90 TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES------KRFVHRDIAARNVLVSSN---DCVKLGDFGLSRYMED  160 (273)
T ss_dssp             TTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEEET---TEEEECC---------
T ss_pred             cCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcc------cCeeccccchhheeecCC---CcEEEccchhheeccC
Confidence             6777665                     67888888      999999999999999986   8999999999987654


Q ss_pred             Cc--cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHH
Q psy6046         135 GI--EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPE  196 (379)
Q Consensus       135 ~~--~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  196 (379)
                      ..  ......||+.|+||               |+||++|||++ |.+||.+.+..++...+..+...   +.++.+|++
T Consensus       161 ~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~---~~~~~~~~~  237 (273)
T d1mp8a_         161 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL---PMPPNCPPT  237 (273)
T ss_dssp             ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC---CCCTTCCHH
T ss_pred             CcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCCCHH
Confidence            33  23345689999999               99999999998 89999999999999888877532   233579999


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         197 AKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       197 ~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +.+||.+||..||++|||++|+++|
T Consensus       238 ~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         238 LYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            9999999999999999999999874

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=312.78  Aligned_cols=210  Identities=19%  Similarity=0.186  Sum_probs=167.6

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc-----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC--Cc
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV-----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP--RP   78 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~-----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~--~g   78 (379)
                      +.||+|+||+||+|+++.+|+.||+ |+...     ....++.+|+.+|+.++||||+++++++.+   .++++++  ++
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAv-K~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~   86 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVAL-KRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQD   86 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEE-EEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEE
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEE-EEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccc
Confidence            4899999999999999999998885 44322     224678999999999999999999998765   7888988  44


Q ss_pred             hhhHH--------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc-c
Q psy6046          79 PVYQA--------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI-E  137 (379)
Q Consensus        79 ~l~~~--------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~-~  137 (379)
                      .+...                    .|+.|||.      +||+||||||+|||++..   +.+||+|||.|+...... .
T Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~------~~IvHrDiKP~NIli~~~---~~~kl~DFG~a~~~~~~~~~  157 (292)
T d1unla_          87 LKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS------RNVLHRDLKPQNLLINRN---GELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECCCCSGGGEEECTT---CCEEECCCTTCEECCSCCSC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHhhc------CCEeeecccCcccccccC---CceeeeecchhhcccCCCcc
Confidence            44443                    67888888      999999999999999975   899999999998875443 3


Q ss_pred             ccccccCCCCcch----------------HHHHHHHHHhhCCCCC-CCCChHHHHHHHHhCCCCC---------------
Q psy6046         138 IRELLGTPDYVGK----------------SLGVTAYVLLTGFSPF-GGETDSETFRNISKAQLDF---------------  185 (379)
Q Consensus       138 ~~~~~gt~~y~aP----------------SlGvil~~lltg~~Pf-~~~~~~~~~~~i~~~~~~~---------------  185 (379)
                      .....+++.|+||                |+||++|+|++|+.|| .+.+..+.+..+.......               
T Consensus       158 ~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (292)
T d1unla_         158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK  237 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC
T ss_pred             ceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccc
Confidence            3345567788888                9999999999999885 5566666666654321111               


Q ss_pred             ----------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCccccCCc
Q psy6046         186 ----------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHPWLMNKK  228 (379)
Q Consensus       186 ----------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  228 (379)
                                .......+|+.+.+||.+||+.||.+||||+|+|+||||++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~  290 (292)
T d1unla_         238 PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             CCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSCS
T ss_pred             ccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCCC
Confidence                      1122346789999999999999999999999999999998754

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-41  Score=315.21  Aligned_cols=204  Identities=15%  Similarity=0.096  Sum_probs=163.2

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEE---EEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC-
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREV---VQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP-   76 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~---a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~-   76 (379)
                      ..++||+|+||+||+|++..+|+.+   +++|....    ...+.+.+|+.+|+.++|||||++++++.+  .++++|+ 
T Consensus        13 ~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~e~~   92 (317)
T d1xkka_          13 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLM   92 (317)
T ss_dssp             EEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECC
T ss_pred             EeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEEEec
Confidence            3459999999999999999988742   23454332    234579999999999999999999998765  6777777 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|.+++.                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+....
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~------~~iiHrDlKp~NIll~~~---~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          93 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED------RRLVHRDLAARNVLVKTP---QHVKITDFGLAKLLGA  163 (317)
T ss_dssp             TTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEEEET---TEEEECCCSHHHHTTT
T ss_pred             cCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHH------cCcccCcchhhcceeCCC---CCeEeeccccceeccc
Confidence             6776665                     67888888      999999999999999986   8999999999987644


Q ss_pred             Ccc---ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCH
Q psy6046         135 GIE---IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISP  195 (379)
Q Consensus       135 ~~~---~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  195 (379)
                      ...   .....||+.|+||               |+||++|||+| |.+||.+.+..++...+..+.....   ++.+|+
T Consensus       164 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~---p~~~~~  240 (317)
T d1xkka_         164 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ---PPICTI  240 (317)
T ss_dssp             TCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCC---CTTBCH
T ss_pred             ccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCC---CcccCH
Confidence            332   2335689999999               99999999998 8999999888888888877653221   236899


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         196 EAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       196 ~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                      ++.+||.+||..||.+|||+.|++.|.
T Consensus       241 ~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         241 DVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence            999999999999999999999999873

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-41  Score=308.02  Aligned_cols=206  Identities=17%  Similarity=0.187  Sum_probs=163.8

Q ss_pred             cCcCCCCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC--CchhhH
Q psy6046           9 HVGGNRARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP--RPPVYQ   82 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~--~g~l~~   82 (379)
                      +.||+|+||.||+|+++.+ +.|| +|....  ...+.+.+|+.+|+.++|||||++++++.+  .|++|||  +|++..
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~-~~vA-iK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~  100 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGT-TRVA-IKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLD  100 (285)
T ss_dssp             EEEEECSSCEEEEEEETTT-EEEE-EEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHH
T ss_pred             eEEeeCCCeEEEEEEECCC-CEEE-EEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhh
Confidence            3699999999999998766 4566 555543  234679999999999999999999998765  8999999  676665


Q ss_pred             H----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc--cc
Q psy6046          83 A----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI--EI  138 (379)
Q Consensus        83 ~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~--~~  138 (379)
                      .                      .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+......  ..
T Consensus       101 ~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~------~~ivH~DlKp~NIll~~~---~~~kl~DfGla~~~~~~~~~~~  171 (285)
T d1fmka3         101 FLKGETGKYLRLPQLVDMAAQIASGMAYVER------MNYVHRDLRAANILVGEN---LVCKVADFGLARLIEDNEYTAR  171 (285)
T ss_dssp             HHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECGG---GCEEECCCCTTC----------
T ss_pred             hhhhcccccchHHHHHHHHHHHHHHHHHHhh------hheecccccceEEEECCC---CcEEEcccchhhhccCCCceee
Confidence            5                      67788887      999999999999999986   899999999998764433  23


Q ss_pred             cccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Q psy6046         139 RELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIA  202 (379)
Q Consensus       139 ~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  202 (379)
                      ....||+.|+||               |+||++|||++ |.+||.+.+..+.+..+.++...   +....+|+++++||.
T Consensus       172 ~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~l~~li~  248 (285)
T d1fmka3         172 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM---PCPPECPESLHDLMC  248 (285)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC---CCCTTSCHHHHHHHH
T ss_pred             ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC---CCCcccCHHHHHHHH
Confidence            346789999999               99999999999 56666778888888888776422   123478999999999


Q ss_pred             HhcccCCCCCCCHHHHhc--CccccCCc
Q psy6046         203 KILIKNPMERMTAKEALK--HPWLMNKK  228 (379)
Q Consensus       203 ~~L~~dP~~Rpt~~e~l~--hp~~~~~~  228 (379)
                      +||..||++|||+++++.  ++||....
T Consensus       249 ~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         249 QCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             HHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence            999999999999999988  88987643

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=306.02  Aligned_cols=200  Identities=15%  Similarity=0.142  Sum_probs=153.7

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc----EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR----EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~----~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      ..+||+|+||+||+|.++.++.    .|| +|....    .....+.+|+.+|+.++|||||++++++.+   .++++||
T Consensus        12 ~~~iG~G~fG~Vy~~~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~   90 (283)
T d1mqba_          12 QKVIGAGEFGEVYKGMLKTSSGKKEVPVA-IKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEY   90 (283)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEE-EEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEe
Confidence            3489999999999999887653    345 565433    223468899999999999999999999764   7899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|.+...                     .|+.|||+      +||+||||||+|||++.+   +.+||+|||+|+...
T Consensus        91 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~------~~iiHrDlKp~NILl~~~---~~~Kl~DFGla~~~~  161 (283)
T d1mqba_          91 MENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN------MNYVHRDLAARNILVNSN---LVCKVSDFGLSRVLE  161 (283)
T ss_dssp             CTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECTT---CCEEECCCCC-----
T ss_pred             cccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccc------cccccCccccceEEECCC---CeEEEcccchhhccc
Confidence              5555554                     67888888      999999999999999985   899999999998765


Q ss_pred             cCc----cccccccCCCCcch---------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCCCCcccccCC
Q psy6046         134 DGI----EIRELLGTPDYVGK---------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLDFPDELFEDI  193 (379)
Q Consensus       134 ~~~----~~~~~~gt~~y~aP---------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  193 (379)
                      ...    ......||+.|+||               |+||++|||++| .+||.+.+..+++..+..+... +  .+..+
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~-~--~~~~~  238 (283)
T d1mqba_         162 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRL-P--TPMDC  238 (283)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC-C--CCTTC
T ss_pred             CCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCC-C--Cchhh
Confidence            432    12335689999999               999999999995 5566677777888877766432 2  22468


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ++.+.+||.+||..||++|||+.|+++
T Consensus       239 ~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         239 PSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             BHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence            999999999999999999999999987

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-40  Score=300.19  Aligned_cols=200  Identities=16%  Similarity=0.152  Sum_probs=158.3

Q ss_pred             cCcCCCCceEEEEEEEcCC-Cc--EEEEEEeccc------ccchHHHHHHHHHHhCCCCCcceeeeecCc--ceEEeeC-
Q psy6046           9 HVGGNRARSSCSRKPEKTT-KR--EVVQWKERNV------SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE--PLLGLNP-   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~t-g~--~~a~~k~~~~------~~~~~~~~E~~il~~l~hpnIv~~~~~~~~--~~~v~e~-   76 (379)
                      +.||+|+||.||+|+...+ ++  .|| +|....      ...+.+.+|+.+|+.++|||||++++++.+  +++++|| 
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vA-iK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~   92 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVA-VKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELA   92 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEE-EEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEE-EEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeee
Confidence            3799999999999986543 43  345 555432      123568999999999999999999998876  7899999 


Q ss_pred             -CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeecc
Q psy6046          77 -RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILD  134 (379)
Q Consensus        77 -~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~  134 (379)
                       +|.+.+.                     .|+.|||+      +||+||||||+||+++.+   +.+||+|||+++....
T Consensus        93 ~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~------~~iiHrDikp~NIll~~~---~~vkl~DfGl~~~~~~  163 (273)
T d1u46a_          93 PLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES------KRFIHRDLAARNLLLATR---DLVKIGDFGLMRALPQ  163 (273)
T ss_dssp             TTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEEEET---TEEEECCCTTCEECCC
T ss_pred             cCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhh------CCEeeeeecHHHhccccc---cceeeccchhhhhccc
Confidence             6666655                     67888888      999999999999999986   8999999999998644


Q ss_pred             Ccc----ccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCC
Q psy6046         135 GIE----IRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDIS  194 (379)
Q Consensus       135 ~~~----~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s  194 (379)
                      ...    .....|++.|+||               |+||++|||+| |.+||.+.+..+....+.+....++.  +..+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~~  241 (273)
T d1u46a_         164 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPR--PEDCP  241 (273)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCC--CTTCC
T ss_pred             CCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCC--ccccc
Confidence            321    2334578899999               99999999998 89999999999999999877655432  35789


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         195 PEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       195 ~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +++.+||.+||..||++|||++++++
T Consensus       242 ~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         242 QDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            99999999999999999999999975

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-40  Score=309.28  Aligned_cols=202  Identities=15%  Similarity=0.108  Sum_probs=165.3

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEE-EEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEeeC--
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREV-VQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGLNP--   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~-a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~e~--   76 (379)
                      +++||+|+||+||+|+++.+|..+ |++|....    ...+.+.+|+++|+.+ +|||||++++++.+   +|++|||  
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~   94 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   94 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecC
Confidence            458999999999999999998764 33554322    2456799999999999 69999999998765   8999999  


Q ss_pred             CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCc
Q psy6046          77 RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCD  120 (379)
Q Consensus        77 ~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~  120 (379)
                      +|+|.+.                                    .|+.|+|+      +||+||||||+|||++.+   +.
T Consensus        95 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~------~~iiHrDlkp~NIL~~~~---~~  165 (309)
T d1fvra_          95 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ------KQFIHRDLAARNILVGEN---YV  165 (309)
T ss_dssp             TCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH------TTEECSCCSGGGEEECGG---GC
T ss_pred             CCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc------CCccccccccceEEEcCC---Cc
Confidence            7777664                                    56777777      999999999999999986   89


Q ss_pred             EEEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCC
Q psy6046         121 IKVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLD  184 (379)
Q Consensus       121 ikl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~  184 (379)
                      +||+|||+|+............||+.|+||               |+||++|+|++| .+||.+.+..++...+..+...
T Consensus       166 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~  245 (309)
T d1fvra_         166 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL  245 (309)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCC
T ss_pred             eEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCC
Confidence            999999999876544444566799999999               999999999996 5689999999998888776432


Q ss_pred             CCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         185 FPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       185 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                         ..+..+|+++.+||.+||..||++|||+.++++|
T Consensus       246 ---~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         246 ---EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             ---CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence               2234689999999999999999999999999986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-40  Score=297.74  Aligned_cols=197  Identities=11%  Similarity=0.071  Sum_probs=159.0

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCCcceeeeecCc----ceEEeeC--Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEPIEKYYSLDPE----PLLGLNP--RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~v~e~--~g~l~   81 (379)
                      .+.||+|+||.||+|++  +|+.||+++.......+.+.+|+++++.++||||+++++++.+    +|+++||  +|+|.
T Consensus        12 ~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~   89 (262)
T d1byga_          12 LQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV   89 (262)
T ss_dssp             EEEEEECSSCEEEEEEE--TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHH
T ss_pred             eEEEecCCCeEEEEEEE--CCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHH
Confidence            45799999999999996  4777885544444556779999999999999999999997632    7999999  78887


Q ss_pred             HH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCcccc
Q psy6046          82 QA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGIEIR  139 (379)
Q Consensus        82 ~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~~~~  139 (379)
                      +.                      .|+.|||+      .+|+||||||+|||++.+   +.+||+|||+++.....  ..
T Consensus        90 ~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~------~~ivH~dlkp~Nil~~~~---~~~kl~dfg~s~~~~~~--~~  158 (262)
T d1byga_          90 DYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG------NNFVHRDLAARNVLVSED---NVAKVSDFGLTKEASST--QD  158 (262)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---SCEEECCCCC-----------
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHhhcccccc------CceeccccchHhheecCC---CCEeecccccceecCCC--Cc
Confidence            76                      67888888      999999999999999986   89999999999875432  34


Q ss_pred             ccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Q psy6046         140 ELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETFRNISKAQLDFPDELFEDISPEAKDFIAK  203 (379)
Q Consensus       140 ~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  203 (379)
                      ...+|+.|+||               |+||++|||+| |++||.+.+..++...+..+....   ....+++++.+||.+
T Consensus       159 ~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~li~~  235 (262)
T d1byga_         159 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMD---APDGCPPAVYEVMKN  235 (262)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCC---CCTTCCHHHHHHHHH
T ss_pred             cccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC---CCccCCHHHHHHHHH
Confidence            56789999999               99999999998 799999988888888887753321   234689999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy6046         204 ILIKNPMERMTAKEALK  220 (379)
Q Consensus       204 ~L~~dP~~Rpt~~e~l~  220 (379)
                      ||..||++|||+.++++
T Consensus       236 cl~~dP~~Rps~~~l~~  252 (262)
T d1byga_         236 CWHLDAAMRPSFLQLRE  252 (262)
T ss_dssp             HTCSSGGGSCCHHHHHH
T ss_pred             HcccCHhHCcCHHHHHH
Confidence            99999999999999987

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=303.64  Aligned_cols=205  Identities=16%  Similarity=0.173  Sum_probs=167.9

Q ss_pred             cCcCCCCceEEEEEEEcC-----CCcEEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT-----TKREVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||.||+|.+..     ++..|| +|..+.    .+...+.+|+.++++++|||||++++++..   .++++||
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VA-vK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~  104 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVA-IKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL  104 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEE-EEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEE-EEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEee
Confidence            369999999999998864     244566 555443    222458899999999999999999998754   8999999


Q ss_pred             --CchhhHH------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEe
Q psy6046          77 --RPPVYQA------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVC  124 (379)
Q Consensus        77 --~g~l~~~------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~  124 (379)
                        +|++...                              .|+.|||+      ++|+||||||+|||++.+   +.+||+
T Consensus       105 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~------~~ivHrDlk~~NiLld~~---~~~Kl~  175 (308)
T d1p4oa_         105 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA------NKFVHRDLAARNCMVAED---FTVKIG  175 (308)
T ss_dssp             CTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH------TTCBCSCCSGGGEEECTT---CCEEEC
T ss_pred             cCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------CCeeeceEcCCceeecCC---ceEEEe
Confidence              7777664                              56777777      999999999999999975   899999


Q ss_pred             ecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhhC-CCCCCCCChHHHHHHHHhCCCCC
Q psy6046         125 DFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLTG-FSPFGGETDSETFRNISKAQLDF  185 (379)
Q Consensus       125 DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~lltg-~~Pf~~~~~~~~~~~i~~~~~~~  185 (379)
                      |||+|+......   .....+||+.|+||               |+||++|||+|| .+||.+.+..+.+..+.++....
T Consensus       176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~  255 (308)
T d1p4oa_         176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLD  255 (308)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCC
T ss_pred             ecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCC
Confidence            999998664432   23345789999999               999999999998 58999999999999988876432


Q ss_pred             CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc------CccccC
Q psy6046         186 PDELFEDISPEAKDFIAKILIKNPMERMTAKEALK------HPWLMN  226 (379)
Q Consensus       186 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~~~~  226 (379)
                      .   ...+|+.+.++|.+||+.||.+|||++++++      +|+|++
T Consensus       256 ~---p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         256 K---PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             C---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             C---cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence            2   2468999999999999999999999999997      566643

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-39  Score=300.50  Aligned_cols=199  Identities=14%  Similarity=0.064  Sum_probs=163.7

Q ss_pred             cCcCCCCceEEEEEEEcC-----CCcEEEEEEecccc----cchHHHHHHHHHHhCCCCCcceeeeecCc---ceEEeeC
Q psy6046           9 HVGGNRARSSCSRKPEKT-----TKREVVQWKERNVS----QGVVIVDEEQLLKLIKVEPIEKYYSLDPE---PLLGLNP   76 (379)
Q Consensus         9 ~~lG~G~fG~V~~a~~~~-----tg~~~a~~k~~~~~----~~~~~~~E~~il~~l~hpnIv~~~~~~~~---~~~v~e~   76 (379)
                      +.||+|+||+||+|+.+.     +++.|| +|.....    ....+.+|+.+|+.++||||+++++++.+   .++++|+
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vA-vK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~   97 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVA-VKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEY   97 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEE-EEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEE-EEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEe
Confidence            479999999999999753     455666 5555432    23568999999999999999999998765   8999999


Q ss_pred             --CchhhHH--------------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcE
Q psy6046          77 --RPPVYQA--------------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNL  110 (379)
Q Consensus        77 --~g~l~~~--------------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Ni  110 (379)
                        +|+|.+.                                            .|++|||+      +||+||||||+||
T Consensus        98 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~------~~ivHrDlKp~NI  171 (301)
T d1lufa_          98 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE------RKFVHRDLATRNC  171 (301)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGE
T ss_pred             cCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc------CCeEeeEEcccce
Confidence              6666653                                            56777777      9999999999999


Q ss_pred             EEeecCCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhhCC-CCCCCCCh
Q psy6046         111 VMMGDFPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLTGF-SPFGGETD  171 (379)
Q Consensus       111 ll~~~~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~lltg~-~Pf~~~~~  171 (379)
                      |++.+   +.+||+|||+|+...+..   ...+.+||+.|+||               |+||++|||++|. +||.+.+.
T Consensus       172 Lld~~---~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~  248 (301)
T d1lufa_         172 LVGEN---MVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH  248 (301)
T ss_dssp             EECGG---GCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             EECCC---CcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCH
Confidence            99986   899999999998664432   23356789999999               9999999999985 78999999


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         172 SETFRNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .+....+..+....   .+..+|+++.+||.+||..||++|||+.|+++
T Consensus       249 ~e~~~~v~~~~~~~---~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         249 EEVIYYVRDGNILA---CPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             HHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCCCC---CCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            99999998876432   23468999999999999999999999999965

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-39  Score=297.76  Aligned_cols=201  Identities=17%  Similarity=0.144  Sum_probs=150.2

Q ss_pred             ccCcCCCCceEEEEEEEcCC-----CcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc----ceEE
Q psy6046           8 SHVGGNRARSSCSRKPEKTT-----KREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE----PLLG   73 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~t-----g~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~----~~~v   73 (379)
                      .+.||+|+||.||+|++..+     ++.|| +|....    .....+.+|..++.++ +||||+.+++++.+    +|++
T Consensus        18 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vA-vK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv   96 (299)
T d1ywna1          18 GKPLGRGAFGQVIEADAFGIDKTATCRTVA-VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   96 (299)
T ss_dssp             EEEEEECSSCEEEEEEEESTTSSSCEEEEE-EEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             eeEEeecCCeEEEEEEEcCCCcccCCeEEE-EEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEE
Confidence            34899999999999997654     34566 555443    2234577888877776 58899999988543    7999


Q ss_pred             eeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeec
Q psy6046          74 LNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGD  115 (379)
Q Consensus        74 ~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~  115 (379)
                      |||  +|+|.+.                                    .|+.|||+      +||+||||||+|||++.+
T Consensus        97 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~------~~ivHrDlKp~NILl~~~  170 (299)
T d1ywna1          97 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS------RKCIHRDLAARNILLSEK  170 (299)
T ss_dssp             EECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCCGGGEEECGG
T ss_pred             EEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh------CCCcCCcCCccceeECCC
Confidence            999  6766543                                    57788888      999999999999999986


Q ss_pred             CCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhhC-CCCCCCCChH-HHH
Q psy6046         116 FPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLTG-FSPFGGETDS-ETF  175 (379)
Q Consensus       116 ~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~lltg-~~Pf~~~~~~-~~~  175 (379)
                         +.+||+|||+|+......   .....+||+.|+||               |+||++|+|+|| .+||.+.+.. ...
T Consensus       171 ---~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~  247 (299)
T d1ywna1         171 ---NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC  247 (299)
T ss_dssp             ---GCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHH
T ss_pred             ---CcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence               899999999998764332   23456799999999               999999999986 5788776544 444


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      ..+..+...   ..+..+|+++.+||.+||..||++|||++|+++|
T Consensus       248 ~~~~~~~~~---~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         248 RRLKEGTRM---RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             HHHHHTCCC---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHhcCCCC---CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            445554322   1224689999999999999999999999999986

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-39  Score=299.00  Aligned_cols=201  Identities=14%  Similarity=0.071  Sum_probs=156.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc---EEEEEEeccc----ccchHHHHHHHHHHhCCCCCcceeeeecC----cceEEeeC
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR---EVVQWKERNV----SQGVVIVDEEQLLKLIKVEPIEKYYSLDP----EPLLGLNP   76 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~---~~a~~k~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~v~e~   76 (379)
                      +++||+|+||+||+|++..++.   .|| +|..+.    ...+.+.+|+++|++|+||||+++++++.    .++++|||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~  110 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCA-VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPY  110 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEE-EEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEEC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEE-EEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEE
Confidence            4689999999999999876542   344 555432    23466999999999999999999999753    27899999


Q ss_pred             --CchhhHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeec
Q psy6046          77 --RPPVYQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVIL  133 (379)
Q Consensus        77 --~g~l~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~  133 (379)
                        +|.+.+.                     .|+.|+|+      .||+||||||+|||+++.   +.+||+|||+++...
T Consensus       111 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~------~~iiHrDLK~~NILl~~~---~~~kL~DFG~~~~~~  181 (311)
T d1r0pa_         111 MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS------KKFVHRDLAARNCMLDEK---FTVKVADFGLARDMY  181 (311)
T ss_dssp             CTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECTT---CCEEECSSGGGCCTT
T ss_pred             eecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcc------cCcccCCccHHhEeECCC---CCEEEecccchhhcc
Confidence              6777665                     56777777      999999999999999875   899999999998765


Q ss_pred             cCcc-----ccccccCCCCcch---------------HHHHHHHHHhhCCCCCC-CCChHHHHHHHHhCCCCCCcccccC
Q psy6046         134 DGIE-----IRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFG-GETDSETFRNISKAQLDFPDELFED  192 (379)
Q Consensus       134 ~~~~-----~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~-~~~~~~~~~~i~~~~~~~~~~~~~~  192 (379)
                      ....     .....||+.|+||               |+|+++|||+||..||. ..+..+....+..+.....+   ..
T Consensus       182 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p---~~  258 (311)
T d1r0pa_         182 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP---EY  258 (311)
T ss_dssp             TTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCC---TT
T ss_pred             ccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCc---cc
Confidence            4321     2235689999999               99999999999766665 44555666777766543222   46


Q ss_pred             CCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy6046         193 ISPEAKDFIAKILIKNPMERMTAKEALKH  221 (379)
Q Consensus       193 ~s~~~~~li~~~L~~dP~~Rpt~~e~l~h  221 (379)
                      +++++.+||.+||..||++|||+.|+++|
T Consensus       259 ~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         259 CPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            89999999999999999999999999987

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6e-39  Score=297.79  Aligned_cols=212  Identities=15%  Similarity=0.134  Sum_probs=160.1

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEecc-cccchHHHHHHHHHHhCCCCCcceeeeec-C---cceEEeeC-Cchhh
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERN-VSQGVVIVDEEQLLKLIKVEPIEKYYSLD-P---EPLLGLNP-RPPVY   81 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~-~---~~~~v~e~-~g~l~   81 (379)
                      .+.||+|+||+||+|++..+|+.||+ |+.. ......+.+|+++++.++|++++..++.+ .   ..+++||| +|.+.
T Consensus        12 ~~~iG~G~fG~Vy~a~~~~~~~~vAv-K~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~~~l~   90 (299)
T d1ckia_          12 GRKIGSGSFGDIYLGTDIAAGEEVAI-KLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLE   90 (299)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEE-EEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCCCBHH
T ss_pred             eEEEeeCCCcEEEEEEECCCCCEEEE-EEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcCCchh
Confidence            45899999999999999999998884 5433 34446789999999999988876655443 2   27899999 55554


Q ss_pred             HH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccceeeccCc----
Q psy6046          82 QA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRVILDGI----  136 (379)
Q Consensus        82 ~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~~~~~~----  136 (379)
                      ..                     .|++|||+      +||+||||||+|||++..+.+..+||+|||+|+.+....    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~------~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  164 (299)
T d1ckia_          91 DLFNFCSRKFSLKTVLLLADQMISRIEYIHS------KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  164 (299)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH------TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB
T ss_pred             hhhhhccCCCcHHHHHHHHHHHHHHHHHHHH------CCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccc
Confidence            44                     67788887      999999999999999876555789999999999875432    


Q ss_pred             ----cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCChHHHHHHH---HhCCCCCC-cccccCC
Q psy6046         137 ----EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETDSETFRNI---SKAQLDFP-DELFEDI  193 (379)
Q Consensus       137 ----~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~~~~~~~i---~~~~~~~~-~~~~~~~  193 (379)
                          .....+||+.|+||               |+||++|+|++|+.||.+.........+   .......+ +...+.+
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGY  244 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTS
T ss_pred             eeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCC
Confidence                23456899999999               9999999999999999876544333222   22111122 2344578


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHH---HHhcCccccC
Q psy6046         194 SPEAKDFIAKILIKNPMERMTAK---EALKHPWLMN  226 (379)
Q Consensus       194 s~~~~~li~~~L~~dP~~Rpt~~---e~l~hp~~~~  226 (379)
                      |+++.+||.+||..||++||+++   ++|+|+|.+.
T Consensus       245 p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         245 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             CHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999999987   4567777643

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-38  Score=292.60  Aligned_cols=200  Identities=17%  Similarity=0.141  Sum_probs=159.6

Q ss_pred             ccCcCCCCceEEEEEEEcCCCc-------EEEEEEecccc----cchHHHHHHHHHHhC-CCCCcceeeeecCc---ceE
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKR-------EVVQWKERNVS----QGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLL   72 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~-------~~a~~k~~~~~----~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~   72 (379)
                      .+.||+|+||.||+|++..+++       .|| +|.....    ....+.+|...+..+ +|||||++++++.+   .|+
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vA-vK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~   96 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVA-VKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV   96 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEE-EECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEE-EEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEE
Confidence            4589999999999999877654       355 6665432    235688899888888 79999999999776   899


Q ss_pred             EeeC--CchhhHH------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          73 GLNP--RPPVYQA------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        73 v~e~--~g~l~~~------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      +|||  +|++++.                                    .|++|||+      +||+||||||+|||++.
T Consensus        97 v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~------~~ivHrDiKp~NiLl~~  170 (299)
T d1fgka_          97 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS------KKCIHRDLAARNVLVTE  170 (299)
T ss_dssp             EECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEECT
T ss_pred             EEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh------CCEEeeeecccceeecC
Confidence            9999  6777653                                    67788888      99999999999999998


Q ss_pred             cCCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      +   +.+||+|||+++......   .....+||+.|+||               |+||++|+|++ |.+||.+.+..++.
T Consensus       171 ~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~  247 (299)
T d1fgka_         171 D---NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  247 (299)
T ss_dssp             T---CCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             C---CCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHH
Confidence            6   899999999998775443   23446789999999               99999999998 79999999988888


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      ..+..+....   .+..+|+++.+||.+||+.||.+|||+.|+++
T Consensus       248 ~~i~~~~~~~---~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         248 KLLKEGHRMD---KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             HHHHTTCCCC---CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHcCCCCC---CCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence            8887764322   22468999999999999999999999999987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-38  Score=293.53  Aligned_cols=201  Identities=17%  Similarity=0.173  Sum_probs=159.9

Q ss_pred             ccCcCCCCceEEEEEEEc-----CCCcEEEEEEeccc----ccchHHHHHHHHHHhC-CCCCcceeeeecCc---ceEEe
Q psy6046           8 SHVGGNRARSSCSRKPEK-----TTKREVVQWKERNV----SQGVVIVDEEQLLKLI-KVEPIEKYYSLDPE---PLLGL   74 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~-----~tg~~~a~~k~~~~----~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~---~~~v~   74 (379)
                      .++||+|+||.||+|++.     .+++.|| +|.+..    .....+.+|+.+++.+ +|||||++++++.+   +|++|
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vA-vK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvm  106 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVA-VKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEE-EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeEEeecCCeEEEEEEEeccccCCCCeEEE-EEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEE
Confidence            458999999999999863     3455667 455433    2345688999999999 69999999999875   89999


Q ss_pred             eC--CchhhHH--------------------------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEee
Q psy6046          75 NP--RPPVYQA--------------------------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMG  114 (379)
Q Consensus        75 e~--~g~l~~~--------------------------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~  114 (379)
                      ||  +|++.+.                                      .|+.|||+      +||+||||||+||+++.
T Consensus       107 E~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~------~~ivHrDLKp~NIl~~~  180 (311)
T d1t46a_         107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS------KNCIHRDLAARNILLTH  180 (311)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH------TTCCCSCCSGGGEEEET
T ss_pred             EcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh------CCeeecccccccccccc
Confidence            99  6665443                                      66778887      99999999999999988


Q ss_pred             cCCCCcEEEeecccceeeccCc---cccccccCCCCcch---------------HHHHHHHHHhh-CCCCCCCCChHHHH
Q psy6046         115 DFPNCDIKVCDFEISRVILDGI---EIRELLGTPDYVGK---------------SLGVTAYVLLT-GFSPFGGETDSETF  175 (379)
Q Consensus       115 ~~~~~~ikl~DFG~a~~~~~~~---~~~~~~gt~~y~aP---------------SlGvil~~llt-g~~Pf~~~~~~~~~  175 (379)
                      +   +.+|++|||+++......   .....+||+.|+||               |+||++|+|+| |.+||.+.+..+.+
T Consensus       181 ~---~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~  257 (311)
T d1t46a_         181 G---RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF  257 (311)
T ss_dssp             T---TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred             c---CcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            5   899999999998765432   23346799999999               99999999998 77778777665555


Q ss_pred             HHHHhCCCCCCcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         176 RNISKAQLDFPDELFEDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .++.......+  ....+|+++.+||.+||..||++|||++++++
T Consensus       258 ~~~i~~~~~~~--~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         258 YKMIKEGFRML--SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             HHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHhcCCCCC--CcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            55544333322  22468999999999999999999999999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-38  Score=290.61  Aligned_cols=211  Identities=13%  Similarity=0.080  Sum_probs=158.6

Q ss_pred             CccCccCcCCCCceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHH--HHhCCCCCcceeeeecCc-------ceEEe
Q psy6046           4 DPMASHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQL--LKLIKVEPIEKYYSLDPE-------PLLGL   74 (379)
Q Consensus         4 d~~~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~i--l~~l~hpnIv~~~~~~~~-------~~~v~   74 (379)
                      |..+.+.||+|+||.||+|++  +|+.|| +|...........+|.++  +..++|||||++++++.+       +|++|
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~--~g~~vA-vK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKW--RGEEVA-VKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEE--TTEEEE-EEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE--CCEEEE-EEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            345667899999999999984  677787 566655555555555554  457899999999998653       68999


Q ss_pred             eC--CchhhHH-------------------HHHHHHhcc--cCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          75 NP--RPPVYQA-------------------SATTKAGSV--LFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        75 e~--~g~l~~~-------------------~al~~lh~~--~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ||  +|+|...                   .|+.|+|..  ..+|++||+||||||+|||++.+   +.+||+|||+++.
T Consensus        81 Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~---~~~Kl~DFGl~~~  157 (303)
T d1vjya_          81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN---GTCCIADLGLAVR  157 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTT---SCEEECCCTTCEE
T ss_pred             ecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCC---CCeEEEecCcccc
Confidence            99  7788777                   789999964  34778999999999999999875   8999999999998


Q ss_pred             eccCc-----cccccccCCCCcch---------------------HHHHHHHHHhhCCCCCCCC---------------C
Q psy6046         132 ILDGI-----EIRELLGTPDYVGK---------------------SLGVTAYVLLTGFSPFGGE---------------T  170 (379)
Q Consensus       132 ~~~~~-----~~~~~~gt~~y~aP---------------------SlGvil~~lltg~~Pf~~~---------------~  170 (379)
                      .....     .....+||+.|+||                     |+||++|||+||.+||...               +
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T d1vjya_         158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccch
Confidence            75433     23456899999999                     9999999999999887421               2


Q ss_pred             hHHHHHHHHhCCCC--CCcccc-cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         171 DSETFRNISKAQLD--FPDELF-EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       171 ~~~~~~~i~~~~~~--~~~~~~-~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      .......+......  +|.... ...+..+.+|+.+||..||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            23333344333332  222111 123356899999999999999999999987

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.3e-36  Score=281.14  Aligned_cols=207  Identities=17%  Similarity=0.180  Sum_probs=162.3

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEec-ccccchHHHHHHHHHHhCCC-CCcceeeeecCc---ceEEeeC-Cchh
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKER-NVSQGVVIVDEEQLLKLIKV-EPIEKYYSLDPE---PLLGLNP-RPPV   80 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~-~~~~~~~~~~E~~il~~l~h-pnIv~~~~~~~~---~~~v~e~-~g~l   80 (379)
                      ..+.||+|+||+||+|++..+|+.||+ |+. .......+.+|+++++.|+| ||++.++++..+   .|++||| +|++
T Consensus         9 i~~~iG~G~fG~Vy~a~~~~~~~~vAv-K~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~~~l   87 (293)
T d1csna_           9 VGRRIGEGSFGVIFEGTNLLNNQQVAI-KFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSL   87 (293)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEE-EEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCCCBH
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEE-EEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecCCCH
Confidence            345899999999999999999999884 554 33445678999999999986 889888887654   7999999 6666


Q ss_pred             hHH---------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecC--CCCcEEEeecccceeeccCc-
Q psy6046          81 YQA---------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDF--PNCDIKVCDFEISRVILDGI-  136 (379)
Q Consensus        81 ~~~---------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~--~~~~ikl~DFG~a~~~~~~~-  136 (379)
                      ...                     .|+.|||+      +||+||||||+|||++...  ..+.+||+|||+|+...... 
T Consensus        88 ~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~------~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~  161 (293)
T d1csna_          88 EDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE------KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  161 (293)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT------TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             HHHHHhhccchhhHHHHHHHHHHHHHHHHHHH------CCceeccCCccceeecCcccccCCceEEcccceeEEcccCcc
Confidence            655                     56777777      9999999999999998632  24789999999998764321 


Q ss_pred             -------cccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCC---hHHHHHHHHhCCC-CCCcccc
Q psy6046         137 -------EIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGET---DSETFRNISKAQL-DFPDELF  190 (379)
Q Consensus       137 -------~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~---~~~~~~~i~~~~~-~~~~~~~  190 (379)
                             .....+||+.||||               |+||++|+|++|..||.+..   ..+....+..... ..+....
T Consensus       162 ~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~  241 (293)
T d1csna_         162 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELC  241 (293)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHT
T ss_pred             ccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhc
Confidence                   23456899999999               99999999999999997643   3334444433222 1223344


Q ss_pred             cCCCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy6046         191 EDISPEAKDFIAKILIKNPMERMTAKEALK  220 (379)
Q Consensus       191 ~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~  220 (379)
                      +.+|+++.+++..|+..+|.+||+++.+.+
T Consensus       242 ~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         242 AGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             TTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence            678999999999999999999999877654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-35  Score=280.24  Aligned_cols=213  Identities=18%  Similarity=0.165  Sum_probs=149.9

Q ss_pred             ccCcCCCCceEEEEEEEcCCCcEEEEEEeccccc--chHHHHHHHHHHhCCC-----------CCcceeeeecCc-----
Q psy6046           8 SHVGGNRARSSCSRKPEKTTKREVVQWKERNVSQ--GVVIVDEEQLLKLIKV-----------EPIEKYYSLDPE-----   69 (379)
Q Consensus         8 ~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~~--~~~~~~E~~il~~l~h-----------pnIv~~~~~~~~-----   69 (379)
                      ...||+|+||+||+|+++.+|+.|| +|+.+...  .+.+.+|+.+++.++|           |||+++++++..     
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vA-vKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~   96 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVA-MKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG   96 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEE-EEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEE-EEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccc
Confidence            3489999999999999999999888 45544432  3567899999998864           678888877543     


Q ss_pred             ceEEeeC---CchhhHH----------------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCC---CcE
Q psy6046          70 PLLGLNP---RPPVYQA----------------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPN---CDI  121 (379)
Q Consensus        70 ~~~v~e~---~g~l~~~----------------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~---~~i  121 (379)
                      .+.++++   .+.....                      .|+.|||+     .+||+||||||+|||++.++..   ..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~-----~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          97 VHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR-----RCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             EEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH-----TTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             eeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh-----hcCcccccCChhHeeeeccCccccccee
Confidence            2344443   2111111                      56777774     2889999999999999876221   248


Q ss_pred             EEeecccceeeccCccccccccCCCCcch---------------HHHHHHHHHhhCCCCCCCCCh------HHHHHHHHh
Q psy6046         122 KVCDFEISRVILDGIEIRELLGTPDYVGK---------------SLGVTAYVLLTGFSPFGGETD------SETFRNISK  180 (379)
Q Consensus       122 kl~DFG~a~~~~~~~~~~~~~gt~~y~aP---------------SlGvil~~lltg~~Pf~~~~~------~~~~~~i~~  180 (379)
                      +++|||.+.....  .....+||+.|+||               |+||++++|++|+.||.+...      .+.+.....
T Consensus       172 kl~dfg~s~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~  249 (362)
T d1q8ya_         172 KIADLGNACWYDE--HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIE  249 (362)
T ss_dssp             EECCCTTCEETTB--CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHH
T ss_pred             eEeeccccccccc--ccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHH
Confidence            9999999986533  34567899999999               999999999999999975432      111111110


Q ss_pred             --CCC------------------CC------------------CcccccCCCHHHHHHHHHhcccCCCCCCCHHHHhcCc
Q psy6046         181 --AQL------------------DF------------------PDELFEDISPEAKDFIAKILIKNPMERMTAKEALKHP  222 (379)
Q Consensus       181 --~~~------------------~~------------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e~l~hp  222 (379)
                        +..                  ..                  ....+...++++.|||.+||..||.+|||++|+|+||
T Consensus       250 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp  329 (362)
T d1q8ya_         250 LLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHP  329 (362)
T ss_dssp             HHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCG
T ss_pred             HhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence              000                  00                  0001123468899999999999999999999999999


Q ss_pred             cccCCc
Q psy6046         223 WLMNKK  228 (379)
Q Consensus       223 ~~~~~~  228 (379)
                      ||++..
T Consensus       330 ~f~~~~  335 (362)
T d1q8ya_         330 WLKDTL  335 (362)
T ss_dssp             GGTTCT
T ss_pred             ccCCCC
Confidence            998553

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=8.1e-20  Score=156.87  Aligned_cols=113  Identities=16%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             CccCcCCCCceEEEEEEEcCCCcEEEEEEecccc---------------------cchHHHHHHHHHHhCCCCCcceeee
Q psy6046           7 ASHVGGNRARSSCSRKPEKTTKREVVQWKERNVS---------------------QGVVIVDEEQLLKLIKVEPIEKYYS   65 (379)
Q Consensus         7 ~~~~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~~---------------------~~~~~~~E~~il~~l~hpnIv~~~~   65 (379)
                      .+..||+|+||.||+|++. +|+.|| +|+....                     ......+|...+..+.|++++..++
T Consensus         4 vg~~IG~G~~g~Vy~a~~~-~g~~vA-vKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSE-KFGECV-VKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             EEEEEEECSSEEEEEEEET-TTEEEE-EEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             hCCEeeeCcceEEEEEECC-CCCEEE-EEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            3568999999999999975 688877 5543210                     0123567899999999999999887


Q ss_pred             ecCcceEEeeC-Cc-hhhHH-------------HHHHHHhcccCCCCCCeEeCCCCCCcEEEeecCCCCcEEEeecccce
Q psy6046          66 LDPEPLLGLNP-RP-PVYQA-------------SATTKAGSVLFPPLMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISR  130 (379)
Q Consensus        66 ~~~~~~~v~e~-~g-~l~~~-------------~al~~lh~~~~~h~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~  130 (379)
                      +. ..+++||+ .| .+...             .++.|||.      +||+||||||+|||+++    ..++|+|||.|.
T Consensus        82 ~~-~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~------~giiHrDiKP~NILv~~----~~~~liDFG~a~  150 (191)
T d1zara2          82 WE-GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYH------RGIVHGDLSQYNVLVSE----EGIWIIDFPQSV  150 (191)
T ss_dssp             EE-TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHH------TTEECSCCSTTSEEEET----TEEEECCCTTCE
T ss_pred             ec-CCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhh------CCEEEccCChhheeeeC----CCEEEEECCCcc
Confidence            75 35889999 22 22111             77888888      99999999999999986    469999999997


Q ss_pred             ee
Q psy6046         131 VI  132 (379)
Q Consensus       131 ~~  132 (379)
                      ..
T Consensus       151 ~~  152 (191)
T d1zara2         151 EV  152 (191)
T ss_dssp             ET
T ss_pred             cC
Confidence            64

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.37  E-value=0.00027  Score=60.66  Aligned_cols=115  Identities=10%  Similarity=-0.078  Sum_probs=71.7

Q ss_pred             CCCC-ceEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHhCCCCC--cceeeeecCc---ceEEeeC-Cc-hhhH-
Q psy6046          12 GNRA-RSSCSRKPEKTTKREVVQWKERNVSQGVVIVDEEQLLKLIKVEP--IEKYYSLDPE---PLLGLNP-RP-PVYQ-   82 (379)
Q Consensus        12 G~G~-fG~V~~a~~~~tg~~~a~~k~~~~~~~~~~~~E~~il~~l~hpn--Iv~~~~~~~~---~~~v~e~-~g-~l~~-   82 (379)
                      ..|. -+.||+... .+|..++ +|.........+..|...++.|....  +.+++.+..+   .+++|++ .| .+.. 
T Consensus        19 ~~G~s~~~v~r~~~-~~~~~~v-lK~~~~~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~~   96 (255)
T d1nd4a_          19 TIGCSDAAVFRLSA-QGRPVLF-VKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSS   96 (255)
T ss_dssp             SCTTSSCEEEEEEC-TTSCCEE-EEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTTS
T ss_pred             CCcccCCeEEEEEe-CCCCEEE-EEeCCccCHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeeccccccc
Confidence            3343 367999873 2343444 67776666667899999998877433  3444544332   6888898 22 1111 


Q ss_pred             ---------H--HHHHHHhcccC----------------------------------------------------CCCCC
Q psy6046          83 ---------A--SATTKAGSVLF----------------------------------------------------PPLMD   99 (379)
Q Consensus        83 ---------~--~al~~lh~~~~----------------------------------------------------~h~~~   99 (379)
                               .  ..+.-||.+-.                                                    .....
T Consensus        97 ~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (255)
T d1nd4a_          97 HLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLV  176 (255)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEE
T ss_pred             cccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCce
Confidence                     1  33444453211                                                    12234


Q ss_pred             eEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046         100 FIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus       100 ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ++|+|+.|.||+++++   ..+-|+||+.+..
T Consensus       177 liHgD~~~~Nvl~~~~---~~~~iID~~~~~~  205 (255)
T d1nd4a_         177 VTHGDACLPNIMVENG---RFSGFIDCGRLGV  205 (255)
T ss_dssp             EECSSCCGGGEEEETT---EEEEECCCTTCEE
T ss_pred             EEeCCCCCcceEEeCC---ceEEEEEchhccc
Confidence            8999999999999874   4567999998854

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.25  E-value=0.0005  Score=63.43  Aligned_cols=66  Identities=11%  Similarity=-0.025  Sum_probs=42.2

Q ss_pred             CcCCCCceEEEEEEEcCCCcEEEEEEeccc----------ccchHHHHHHHHHHhCC-C--CCcceeeeecCc-ceEEee
Q psy6046          10 VGGNRARSSCSRKPEKTTKREVVQWKERNV----------SQGVVIVDEEQLLKLIK-V--EPIEKYYSLDPE-PLLGLN   75 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~tg~~~a~~k~~~~----------~~~~~~~~E~~il~~l~-h--pnIv~~~~~~~~-~~~v~e   75 (379)
                      -||-|....||++.+..+|+.+++ |....          ....+...|...|+.+. +  ..+.+++.+..+ .+++||
T Consensus        33 eig~G~~N~vfrV~~~~~~~sviv-Kqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE  111 (392)
T d2pula1          33 EIGDGNLNYVFHIYDQEHDRALII-KQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVME  111 (392)
T ss_dssp             ECCSSSSEEEEEEEC----CEEEE-EEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEEC
T ss_pred             EeCCCceEeEEEEEeCCCCeEEEE-ecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCCCCEEEEe
Confidence            578899999999998777777774 42211          12345678998888775 2  335566666554 678899


Q ss_pred             C
Q psy6046          76 P   76 (379)
Q Consensus        76 ~   76 (379)
                      +
T Consensus       112 ~  112 (392)
T d2pula1         112 D  112 (392)
T ss_dssp             C
T ss_pred             c
Confidence            8

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.23  E-value=0.0015  Score=55.97  Aligned_cols=113  Identities=9%  Similarity=-0.034  Sum_probs=68.4

Q ss_pred             CCceEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC----CCCcceeeeecCcceEEeeC-Cc-hhhHH--
Q psy6046          14 RARSSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK----VEPIEKYYSLDPEPLLGLNP-RP-PVYQA--   83 (379)
Q Consensus        14 G~fG~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~----hpnIv~~~~~~~~~~~v~e~-~g-~l~~~--   83 (379)
                      |+-+.||+..  .++..+++++....  .....+.+|...++.|.    -|.++.+..--...+++|++ .| .+...  
T Consensus        25 ~s~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~  102 (263)
T d1j7la_          25 MSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE  102 (263)
T ss_dssp             CSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTT
T ss_pred             CCCCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccccc
Confidence            3446899986  45555653333222  23446889999988775    24444333323337889999 33 22221  


Q ss_pred             -------------HHHHHHhcccC-----------------------------------------------------CCC
Q psy6046          84 -------------SATTKAGSVLF-----------------------------------------------------PPL   97 (379)
Q Consensus        84 -------------~al~~lh~~~~-----------------------------------------------------~h~   97 (379)
                                   ..+..||++-.                                                     ...
T Consensus       103 ~~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (263)
T d1j7la_         103 DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEE  182 (263)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcCCcCC
Confidence                         34555564321                                                     112


Q ss_pred             CCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          98 MDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        98 ~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..++|+|+.|.||++++.   +.+-|+||+.+..
T Consensus       183 ~~l~HgD~~~~Nil~~~~---~~~~lIDwe~a~~  213 (263)
T d1j7la_         183 LVFSHGDLGDSNIFVKDG---KVSGFIDLGRSGR  213 (263)
T ss_dssp             EEEECSCCCTTSEEEETT---EEEEECCCTTCEE
T ss_pred             cEEEEeeccCcceeecCC---ceEEEeechhccc
Confidence            348999999999999863   4456999998864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=96.08  E-value=0.0035  Score=43.68  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=47.4

Q ss_pred             hhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCCCC
Q psy6046         302 KTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       302 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .+.+..+.++|..+|.+     |.|.++ ..++..++...+.....++.++++.+|-|+.+.+
T Consensus         2 ~ee~~e~~~~F~~~D~d-----~~G~I~-~~El~~~l~~lg~~~~~ei~~~~~~~D~d~~G~I   58 (81)
T d2opoa1           2 PQDIADRERIFKRFDTN-----GDGKIS-SSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFI   58 (81)
T ss_dssp             HHHHHHHHHHHHHHCTT-----CSSEEE-HHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEE
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCc-HHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeE
Confidence            34566778999999999     999999 9999999888766678889999999988776554

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.0069  Score=42.06  Aligned_cols=62  Identities=11%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             ccccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         297 MSLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       297 ~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .+.++++.+..+...|..+|.+     |.|.++ ..++..++....- +...++.+++..++.++.+.+
T Consensus         5 ~~~Lt~~~i~el~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~s~~e~~~~~~~~D~d~~g~I   67 (81)
T d1avsa_           5 RAFLSEEMIAEFKAAFDMFDAD-----GGGDIS-TKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI   67 (81)
T ss_dssp             HHHBCHHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSE
T ss_pred             hccCCHHHHHHHHHHHHHHcCC-----CCCeEc-hhHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeE
Confidence            4556777888889999999999     999999 9999999988655 688889999999988775543

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.012  Score=40.26  Aligned_cols=59  Identities=8%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .++++.+..+.++|..+|.+     |.|.++ ..++..++...+- +...++.+++..++.++.+-
T Consensus         3 ~lt~eqi~el~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~t~~e~~~~~~~~D~~~~g~   62 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKD-----NNGSIS-SSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQ   62 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTT-----CSSEEE-HHHHHHHHHHHTCCCCHHHHHHHHHTTCCSSCCE
T ss_pred             CCCHHHHHHHHHHHHHHcCC-----CCCeEC-hHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCe
Confidence            45667777888999999999     999999 9999998888644 57788999999998876443

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.19  E-value=0.031  Score=48.91  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             CCCeEeCCCCCCcEEEeecCCCCcEEEeeccccee
Q psy6046          97 LMDFIFFFLQPQNLVMMGDFPNCDIKVCDFEISRV  131 (379)
Q Consensus        97 ~~~ivHrDlkp~Nill~~~~~~~~ikl~DFG~a~~  131 (379)
                      ..|++|+|+.+.|++++.+   ...-|.||+.+..
T Consensus       182 ~~giIHgDl~~dNvl~~~~---~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGD---ELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETT---EEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccc---cceeEeccccccc
Confidence            5689999999999999974   5568999999854

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.027  Score=49.72  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=27.2

Q ss_pred             eEEEEEEEcCCCcEEEEEEeccc--ccchHHHHHHHHHHhCC
Q psy6046          17 SSCSRKPEKTTKREVVQWKERNV--SQGVVIVDEEQLLKLIK   56 (379)
Q Consensus        17 G~V~~a~~~~tg~~~a~~k~~~~--~~~~~~~~E~~il~~l~   56 (379)
                      -.||++.. .+|..|| +|+...  ...+.+..|...+..|.
T Consensus        36 N~vy~v~~-~dg~~~V-lK~~rp~~~s~~~i~~E~~~l~~L~   75 (325)
T d1zyla1          36 NRVYQFQD-EDRRRFV-VKFYRPERWTADQILEEHQFALQLV   75 (325)
T ss_dssp             SEEEEECC-TTCCCEE-EEEECTTTSCHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEc-CCCCEEE-EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            37999974 4566677 576554  24567889999888877

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=94.90  E-value=0.013  Score=39.69  Aligned_cols=57  Identities=7%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             cchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         300 VSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       300 ~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ++++.+..+..+|..+|.+     |.|.++ ..++..++...+- +...++.++++.++.++.+
T Consensus         2 Ls~eei~el~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g   59 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKD-----GDGTIT-TKELGTVMRSLGQNPTEAELQDMINEVDADGNG   59 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTT-----SSSEEE-GGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSS
T ss_pred             cCHHHHHHHHHHHHHHcCC-----CCceEe-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence            4566777888999999999     999999 7778888877655 5677788888888776543

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=94.65  E-value=0.022  Score=39.35  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=45.6

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      .+.+.++|..+|.+     |.|.++ ..++..++...+. +...++++++..++.++.+.+
T Consensus        14 ee~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~dg~I   68 (81)
T d1fi5a_          14 EEELSDLFRMFDKN-----ADGYID-LEELKIMLQATGETITEDDIEELMKDGDKNNDGRI   68 (81)
T ss_dssp             HHHHHHHHHHHCSS-----CSSEEC-HHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSSSSE
T ss_pred             HHHHHHHHHHHcCC-----CCCccc-HHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCCCcE
Confidence            45577999999999     999999 9999999988765 678889999999988776554

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.45  E-value=0.026  Score=37.03  Aligned_cols=53  Identities=11%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      +.+.++|..+|.+     |.|.++ ..++..++...+. +...++.++++.++.+..+.+
T Consensus         3 eel~~aF~~fD~d-----~~G~I~-~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I   56 (65)
T d1fw4a_           3 EEIREAFRVFDKD-----GNGYIS-AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV   56 (65)
T ss_dssp             HHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSE
T ss_pred             HHHHHHHHHHcCC-----CCCcCC-HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcE
Confidence            4466899999999     999999 9999999999766 788899999999988876544

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.21  E-value=0.026  Score=38.33  Aligned_cols=55  Identities=11%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      +.+.+.++|..+|.+     |.|.++ ..++..++...+- +...+++++++.++.++.+-+
T Consensus         7 ~eeel~~~F~~fD~~-----~~G~I~-~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I   62 (75)
T d1jc2a_           7 SEEELANCFRIFDKN-----ADGFID-IEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRI   62 (75)
T ss_dssp             CHHHHHHHHHHHCCS-----TTSSEE-HHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEE
T ss_pred             cHHHHHHHHHHHcCC-----CcCeEc-HHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcE
Confidence            345677999999999     999999 9999999988755 788899999999988765443

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.93  E-value=0.031  Score=38.05  Aligned_cols=55  Identities=7%  Similarity=0.107  Sum_probs=44.0

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      +.+.+.++|..+|.+     |.|.++ ..++...+..... +...+++++++.++.++.+-+
T Consensus         7 ~~e~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~G~I   62 (77)
T d1oqpa_           7 SREEILKAFRLFDDD-----NSGTIT-IKDLRRVAKELGENLTEEELQEMIAEADRNDDNEI   62 (77)
T ss_dssp             HHHHHHHHHHHHCTT-----CSSSEE-HHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSSEE
T ss_pred             HHHHHHHHHHHHcCC-----CCCEec-hHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcE
Confidence            445677999999999     999999 8888888888655 567788899988877665443

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=93.78  E-value=0.058  Score=37.17  Aligned_cols=58  Identities=7%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             ccchhhhhHHhHHhhhccccchhhcC-CcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         299 LVSKTREKSLGDMAISLGRSKEKLYG-FKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       299 ~~~~~~~~~~~~~f~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .++++....+.+.|..+|.+     | +|.++ ..++..++...+- +...++.++++.++.+..+
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d-----~~~G~I~-~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G   67 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLG-----AEDGSIS-TKELGKVMRMLGQNPTPEELQEMIDEVDEDGSG   67 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTT-----CTTSSBC-HHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCS
T ss_pred             hCCHHHHHHHHHHHHHHcCc-----CCCCeEe-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCC
Confidence            45677778888999999999     8 58999 9999999988655 6888999999999876544

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=93.42  E-value=0.027  Score=39.46  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +++.+..+.++|..+|.+     |.|.++ ..++..+++..+- +...++.++++.++.+..+-
T Consensus        18 ~~~~i~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~lg~~~s~~e~~~l~~~~D~d~~g~   75 (87)
T d1s6ja_          18 SEEEIGGLKELFKMIDTD-----NSGTIT-FDELKDGLKRVGSELMESEIKDLMDAADIDKSGT   75 (87)
T ss_dssp             CSSSTTTTTTHHHHHCTT-----CSSCEE-HHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSE
T ss_pred             CHHHHHHHHHHHHHHcCC-----CCCcCc-HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCe
Confidence            344445567999999999     999999 9999999998755 67889999999998877553

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.073  Score=36.56  Aligned_cols=54  Identities=7%  Similarity=0.041  Sum_probs=45.3

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ...+.+.|..+|.+     |.|.++ ..++.+.+....- +.+.++..++..++.++.+.+
T Consensus        19 ~~~l~~~F~~~D~~-----~~G~i~-~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I   73 (83)
T d1wlza1          19 YHAITQEFENFDTM-----KTNTIS-REEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRL   73 (83)
T ss_dssp             HHHHHHHHHHHCTT-----CSSCBC-HHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCB
T ss_pred             HHHHHHHHHHHCCC-----CCceEC-hhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcE
Confidence            34566899999999     999999 9999999988754 788999999999988775554

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.20  E-value=0.043  Score=41.89  Aligned_cols=51  Identities=14%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ..+.++|..+|.+     |.|.++ .+++..++..... +...+++++++.++.+.|.
T Consensus        76 ~~l~~aF~~~D~d-----~~G~I~-~~el~~~l~~~g~~lt~~e~~~l~~~~d~~dG~  127 (140)
T d1ggwa_          76 EEFVKGFQVFDKD-----ATGMIG-VGELRYVLTSLGEKLSNEEMDELLKGVPVKDGM  127 (140)
T ss_dssp             HHHHHHHHTTCSS-----CSSCCC-HHHHHHHHHHHHSCSCHHHHHHHHHHTTCSSCC
T ss_pred             HHHHHHHHHHhcc-----CCCcch-HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCE
Confidence            3466899999999     999999 9999999987654 7888999999999987664

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.52  E-value=0.073  Score=34.24  Aligned_cols=51  Identities=8%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .+.+.|..+|++     |.|.++ ..++..++..... +...++.++++.++.+..+-
T Consensus         2 el~~aF~~fD~~-----~~G~I~-~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~   53 (61)
T d2fcea1           2 DFVKAFQVFDKE-----STGKVS-VGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGE   53 (61)
T ss_dssp             HHHHHHHHHCTT-----CCSCEE-HHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSE
T ss_pred             hHHHHHHHHCCC-----CCCeEe-HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCc
Confidence            356889999999     999999 9999999988755 78899999999988776443

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.08  E-value=0.081  Score=34.72  Aligned_cols=49  Identities=10%  Similarity=0.028  Sum_probs=39.5

Q ss_pred             HhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         308 LGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       308 ~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      +.++|..+|.+     |.|.++ ..++..++....- +...+++++++.++.++.+
T Consensus         3 ~r~~F~~~D~d-----~~G~I~-~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg   52 (67)
T d1tiza_           3 AKRVFEKFDKN-----KDGKLS-LDEFREVALAFSPYFTQEDIVKFFEEIDVDGNG   52 (67)
T ss_dssp             HHHHHHHHCTT-----SSSCEE-HHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSS
T ss_pred             HHHHHHHHCCC-----CcCcCc-HHHHHHHHHHhccccchHHHHHHHHHhCCCCCC
Confidence            45889999999     999999 8888888887654 6778888888888776543

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.12  Score=36.48  Aligned_cols=55  Identities=9%  Similarity=0.102  Sum_probs=37.3

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCCC
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKGT  362 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  362 (379)
                      +.+....+.++|..+|.+     |.|.++ .+++...+...+ +...++..+++.+|.++.+
T Consensus         5 t~~e~~~~~~~F~~~D~d-----~~G~is-~~e~~~~l~~~~-l~~~~l~~i~~~~D~d~dG   59 (95)
T d1c07a_           5 SPAEKAKYDEIFLKTDKD-----MDGFVS-GLEVREIFLKTG-LPSTLLAHIWSLCDTKDCG   59 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHTTT-CCHHHHHHHHHHHCTTCSS
T ss_pred             CHHHHHHHHHHHHHHCCC-----CCCCCc-HHHHHHHHHhcC-CCHHHHHHHHHHhCCCCCC
Confidence            445556778999999999     999888 666666665543 3555666666666655443

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=90.40  E-value=0.14  Score=37.30  Aligned_cols=54  Identities=9%  Similarity=0.166  Sum_probs=41.7

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcc----cCchhhHHHHHHhcccCCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMK----DINNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ...+.++|..+|.+     |.|.++ .+++..++....    .+...+++++++.++.|+.+.+
T Consensus        40 ~~~l~~~F~~~D~d-----~~G~I~-~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~d~dG~I   97 (109)
T d5pala_          40 DAQVKEVFEILDKD-----QSGFIE-EEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKI   97 (109)
T ss_dssp             HHHHHHHHHHHCTT-----CSSEEC-HHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHhhhcCC-----CCCeEc-HHHHHHHHHHhhhccCcCCHHHHHHHHHHhCCCCCCCE
Confidence            34567899999999     999999 888887776532    1567789999999987765544

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=89.28  E-value=0.14  Score=33.72  Aligned_cols=51  Identities=8%  Similarity=0.144  Sum_probs=35.3

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc--CchhhHHHHHHhcccCCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD--INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~  363 (379)
                      .+.++|..+|.+     |.|.++ ..++..++.....  +...+++++++.++.+..+-
T Consensus         3 el~~~F~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~   55 (68)
T d1c7va_           3 EILRAFKVFDAN-----GDGVID-FDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV   55 (68)
T ss_dssp             HHHHHHHHHSCS-----GGGEEC-HHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGS
T ss_pred             HHHHHHHHHcCC-----CcCeEc-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCc
Confidence            456788888888     888888 7777777766533  45667777777776665443

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.99  E-value=0.22  Score=34.81  Aligned_cols=54  Identities=6%  Similarity=0.043  Sum_probs=32.1

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhcccCchhhHHHHHHhcccCCC
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKDINNICIDEIIKNINDNKG  361 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  361 (379)
                      +.+....+.++|..+|.+     |.|.++ .+++.+.+...+ +...++..+++.+|.|+.
T Consensus         4 s~ee~~~y~~~F~~~D~d-----~~G~i~-~~e~~~~l~~~~-l~~~~l~~i~~~~D~d~d   57 (92)
T d1fi6a_           4 TDEQRQYYVNQFKTIQPD-----LNGFIP-GSAAKEFFTKSK-LPILELSHIWELSDFDKD   57 (92)
T ss_dssp             CHHHHHHHHHHHTTTCCS-----TTCEEE-HHHHHHHHHHHS-SCHHHHHHHHHHHCTTCS
T ss_pred             CHHHHHHHHHHHHHhCCC-----cccchh-HHHHHHHHHHcc-CCHHHHHHHHHHhCCCCC
Confidence            445556677889999888     888877 555555554432 244445555555444443

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=88.44  E-value=0.2  Score=37.88  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      +.+.++|..+|.+     |.|.++ .+++..++..... +...+++++++.++.++|.
T Consensus        76 ~~l~~aF~~~D~d-----~~G~I~-~~el~~~l~~~g~~lt~~e~~~l~~~~d~~~G~  127 (142)
T d1wdcb_          76 ETIRNAFAMFDEQ-----ETKKLN-IEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGK  127 (142)
T ss_dssp             HHHHHHHHTTCTT-----CCSCEE-HHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTE
T ss_pred             hhHHHhhhhhccc-----CCCccc-HHHHHHHHHHccccCCHHHHHHHHHHhCCCCCE
Confidence            4556899999999     999999 9999999988765 6788999999999877543

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.90  E-value=1  Score=40.10  Aligned_cols=65  Identities=9%  Similarity=-0.070  Sum_probs=41.0

Q ss_pred             CcCCCCceEEEEEEEcCC-------CcEEEEEEeccc-ccchHHHHHHHHHHhCCCCCc-ceeeeecCcceEEeeC
Q psy6046          10 VGGNRARSSCSRKPEKTT-------KREVVQWKERNV-SQGVVIVDEEQLLKLIKVEPI-EKYYSLDPEPLLGLNP   76 (379)
Q Consensus        10 ~lG~G~fG~V~~a~~~~t-------g~~~a~~k~~~~-~~~~~~~~E~~il~~l~hpnI-v~~~~~~~~~~~v~e~   76 (379)
                      .|+-|-.=.+|++.....       ++.++ +++... .......+|..+++.+.-.++ .++++++.+ ..++||
T Consensus        49 ~l~GGltN~~y~v~~~~~~~~~~~~~~~vl-lRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~-g~I~ef  122 (395)
T d1nw1a_          49 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVL-LRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG-GRLEEY  122 (395)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEE-EEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT-EEEECC
T ss_pred             EcCCccccceEEEEeCCCCccccCCCCcEE-EEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC-ceEEEE
Confidence            566677788999876542       23344 555432 223446789999998874444 467777654 556777

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.82  E-value=0.27  Score=35.53  Aligned_cols=55  Identities=5%  Similarity=0.101  Sum_probs=41.6

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc----CchhhHHHHHHhcccCCCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD----INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ....+.++|..+|.+     |.|.++ ..++.+.+.....    +...+++++++.++.|+.+-+
T Consensus        39 ~~~~l~~~F~~~D~d-----~~G~I~-~~El~~~l~~l~~~~~~l~~~~~~~~~~~~D~d~dG~I   97 (108)
T d1rroa_          39 SASQVKDIFRFIDND-----QSGYLD-GDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKI   97 (108)
T ss_dssp             CHHHHHHHHHHHCTT-----CSSEEC-THHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSE
T ss_pred             CHHHHHHHHhhhcCC-----CCCeEc-HHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCeE
Confidence            445567899999999     999999 8888888876422    456788888888887665544

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=87.78  E-value=0.21  Score=27.76  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=25.5

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhc
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSM  341 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  341 (379)
                      .+.+.+.|+.+|++     |+|.++ .+++..++...
T Consensus         2 eeel~eAF~~FDkD-----g~G~Is-~~EL~~vm~~l   32 (33)
T d2hf5a1           2 EEEIREAFRVFDKD-----GNGYIS-AAELRHVMTNL   32 (33)
T ss_dssp             HHHHHHHHHHHSSS-----CCSCBC-HHHHHHHTTSC
T ss_pred             HHHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHc
Confidence            34567899999999     999999 88888877653

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=87.35  E-value=0.34  Score=35.02  Aligned_cols=54  Identities=7%  Similarity=0.106  Sum_probs=40.3

Q ss_pred             hhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc----CchhhHHHHHHhcccCCCCCC
Q psy6046         305 EKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD----INNICIDEIIKNINDNKGTWP  364 (379)
Q Consensus       305 ~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~~~~~  364 (379)
                      ...+.++|..+|.+     |.|.++ .+++...+.....    +...+++++++.++.|+.+-+
T Consensus        40 ~~~~~~~F~~~D~d-----~~G~I~-~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D~d~dG~I   97 (109)
T d1pvaa_          40 ANDVKKVFKAIDAD-----ASGFIE-EEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKI   97 (109)
T ss_dssp             HHHHHHHHHHHCTT-----CSSSBC-HHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHhhCccCC-----CcCeEc-HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHCCCCcCcE
Confidence            34556899999999     999999 8888877776421    456778888888877665544

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=86.34  E-value=0.46  Score=35.65  Aligned_cols=60  Identities=7%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             cchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCCc
Q psy6046         300 VSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWPS  365 (379)
Q Consensus       300 ~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~  365 (379)
                      ++++.++.+.++|..+|.+     |.|.++ .+++.+++..... .....+.++++.++.++.+..+
T Consensus         3 lt~~e~~~l~~~F~~~D~~-----~~G~Is-~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~   63 (146)
T d1exra_           3 LTEEQIAEFKEAFALFDKD-----GDGTIT-TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID   63 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-----CSSEEC-HHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEE
T ss_pred             CCHHHHHHHHHHHHHHcCC-----CCCeEC-HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCCccc
Confidence            4556677788999999999     999999 7777777665444 4555666777777665554443

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=86.08  E-value=0.64  Score=34.80  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             HHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         307 SLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       307 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      .+.++|..+|.+     |.|.++ .+++...+...+. +...+++++++.++.|+.+
T Consensus        83 ~~~~~F~~~D~d-----~~G~i~-~~e~~~~l~~~~~~~~~~~~~~i~~~~D~d~dG  133 (146)
T d1exra_          83 ELIEAFKVFDRD-----GNGLIS-AAELRHVMTNLGEKLTDDEVDEMIREADIDGDG  133 (146)
T ss_dssp             HHHHHHHHHSTT-----CSSCBC-HHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSS
T ss_pred             HHHHHHHHhCCC-----CCCcCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCC
Confidence            455889999999     999999 8988888887655 6778899999999876644

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=86.00  E-value=0.5  Score=33.92  Aligned_cols=53  Identities=2%  Similarity=0.058  Sum_probs=39.9

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc----CchhhHHHHHHhcccCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD----INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~~~  362 (379)
                      ..+.+..+|..+|.+     |.|.++ ..++...+.....    +...++.++++.++.|+.+
T Consensus        38 ~~~~l~~~F~~~D~d-----~~G~I~-~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~d~dG   94 (107)
T d2pvba_          38 SLDDVKKAFYVIDQD-----KSGFIE-EDELKLFLQNFSPSARALTDAETKAFLADGDKDGDG   94 (107)
T ss_dssp             CHHHHHHHHHHHCTT-----CSSSBC-HHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSS
T ss_pred             CHHHHHHHHHhhccC-----CCCcCc-HHHHHHHHHHhhcccccCCHHHHHHHHHHhCCCCCC
Confidence            334566899999999     999999 8888887777532    4667788888888776544

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=84.56  E-value=0.56  Score=33.74  Aligned_cols=53  Identities=6%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             hhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc----CchhhHHHHHHhcccCCCC
Q psy6046         304 REKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD----INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       304 ~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~~~  362 (379)
                      ....+.++|..+|.+     |.|.++ .+++...+.....    +...+++++++.++.|+.+
T Consensus        39 ~~~~~~~~F~~~D~d-----~~G~I~-~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d~dG   95 (109)
T d1rwya_          39 SADDVKKVFHILDKD-----KSGFIE-EDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDG   95 (109)
T ss_dssp             CHHHHHHHHHHHSTT-----CSSEEC-HHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSS
T ss_pred             CHHHHHHHhhcccCC-----CCCcCc-HHHHHHHHHHhccccccCCHHHHHHHHHHhCCCCCC
Confidence            344556899999999     999999 8888877766432    4567788888888766544

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=84.33  E-value=0.37  Score=33.46  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             hHHHHHHHHhcccCchhhHHHHHHhcc
Q psy6046         331 SQEVLNLYKSMKDINNICIDEIIKNIN  357 (379)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~e~~~~~~  357 (379)
                      .+++++.+|.++| +.++|+||+.-+.
T Consensus        52 ~~~~~~~lD~d~D-g~IdF~EF~~l~~   77 (89)
T d1k8ua_          52 IARLMEDLDRNKD-QEVNFQEYVTFLG   77 (89)
T ss_dssp             HHHHHHHHHHTTT-CEEEHHHHHHHHH
T ss_pred             HHHHHHHhcCCCC-CCCcHHHHHHHHH
Confidence            8899999999999 9999999997654

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.56  Score=32.83  Aligned_cols=45  Identities=20%  Similarity=0.059  Sum_probs=25.6

Q ss_pred             chhhhhHHhHHhhhccccchhhcCCcccC----------------ChHHHHHHHHhcccCchhhHHHH
Q psy6046         301 SKTREKSLGDMAISLGRSKEKLYGFKCLS----------------KSQEVLNLYKSMKDINNICIDEI  352 (379)
Q Consensus       301 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~----------------~~~~~~~~~~~~~~~~~~~~~e~  352 (379)
                      +.+....+.++|..+| +     |.|.++                ....+.+.+|.+++ |..+++||
T Consensus         5 s~ee~~~y~~~F~~~D-~-----~~G~i~~~el~~~l~~~gl~~~~L~~Iw~~~D~~~d-G~l~~~EF   65 (95)
T d2jxca1           5 KPEDKAKYDAIFDSLS-P-----VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHD-GMLDRDEF   65 (95)
T ss_dssp             CHHHHHHHHHHHHHTC-C-----BTTEEEHHHHHHHHTTSSCCHHHHHHHHHHHCTTCS-SEEEHHHH
T ss_pred             CHHHHHHHHHHHHHhC-C-----CCCceeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC-CeEcHHHH
Confidence            3444555667777777 6     556665                14445555555555 55555555

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.44  E-value=0.62  Score=35.06  Aligned_cols=52  Identities=8%  Similarity=-0.029  Sum_probs=43.1

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTW  363 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~  363 (379)
                      +.+.++|+.+|.+     |.|.++ ..++.+.+...+. +...+++++++.++.|+.+.
T Consensus        77 ~~l~~aF~~fD~~-----~~g~I~-~~el~~~l~~~g~~ls~~e~~~~~~~~d~d~dg~  129 (145)
T d2mysb_          77 DVIMGAFKVLDPD-----GKGSIK-KSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGN  129 (145)
T ss_pred             HHHHHHHHhhhhc-----ccchhh-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCe
Confidence            3456889999999     999999 9999999887665 67889999999998876544

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.65  E-value=0.68  Score=34.71  Aligned_cols=50  Identities=12%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      ..+.++|..+|.+     |.|.++ .+++.+.+..... +...+++++++...++.|
T Consensus        81 ~~l~~aF~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~e~~~l~~~~~d~dG  131 (145)
T d2mysc_          81 EDFVEGLRVFDKE-----GNGTVM-GAELRHVLATLGEKMTEEEVEELMKGQEDSNG  131 (145)
T ss_pred             HHHHHHHHHhhcC-----CCCEEc-HHHHHHHHHHhCCCCCHHHHHHHHhhcCCCCC
Confidence            3456899999999     999999 9999999987654 678899999987554443

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=82.06  E-value=0.54  Score=32.87  Aligned_cols=26  Identities=12%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             hHHHHHHHHhcccCchhhHHHHHHhcc
Q psy6046         331 SQEVLNLYKSMKDINNICIDEIIKNIN  357 (379)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~e~~~~~~  357 (379)
                      ..++++.+|.++| +.++|+||+.-+.
T Consensus        54 ~~~~~~~lD~n~D-g~IdF~EF~~l~~   79 (93)
T d1ksoa_          54 YNKFMSVLDTNKD-CEVDFVEYVRSLA   79 (93)
T ss_dssp             HHHHHHHHHHTTT-CEECHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCCcHHHHHHHHH
Confidence            8899999999999 9999999987554

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.83  E-value=0.68  Score=35.37  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             cccchhhhhHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCC
Q psy6046         298 SLVSKTREKSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKG  361 (379)
Q Consensus       298 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  361 (379)
                      ..++.+.+..+.++|..+|.+     |.|.++ .+++...+...+. +...++.+++..++.++.
T Consensus        12 ~~ls~~~i~el~~~F~~~D~d-----~~G~Is-~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~   70 (162)
T d1topa_          12 AFLSEEMIAEFKAAFDMFDAD-----GGGDIS-TKELGTVMRMLGQNPTKEELDAIIEEVDEDGS   70 (162)
T ss_dssp             HHSCHHHHHHHHHHHHTTTCS-----CSSEEE-GGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSC
T ss_pred             ccCCHHHHHHHHHHHHHHcCC-----CCCeEc-HHHHHHHHhccCCchhHHHHHhhhheeccCCC
Confidence            455666667788999999999     999999 7888777776555 556778888888776654

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.05  E-value=0.69  Score=34.72  Aligned_cols=51  Identities=16%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             hHHhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCC
Q psy6046         306 KSLGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGT  362 (379)
Q Consensus       306 ~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~  362 (379)
                      ..+..+|..+|.+     +.|.++ .+++..++...+. +...+++++++.++++.|.
T Consensus        83 ~~~~~aF~~~D~d-----~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~dd~dG~  134 (146)
T d1lkja_          83 QELLEAFKVFDKN-----GDGLIS-AAELKHVLTSIGEKLTDAEVDDMLREVSDGSGE  134 (146)
T ss_dssp             HHHHHHHHHHCSS-----SSCEEE-HHHHHHHHHHHTCSCCHHHHHHHHHHHCCSSSE
T ss_pred             HHHHHHHHHhCCC-----CCCcCc-HHHHHHHHHHcCCcccHHHHHHHHHhccCCCCe
Confidence            4456889999999     999999 8888888877655 6788899999988865543

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.19  E-value=1.5  Score=33.28  Aligned_cols=52  Identities=10%  Similarity=0.203  Sum_probs=38.5

Q ss_pred             HhHHhhhccccchhhcCCcccCChHHHHHHHHhccc-CchhhHHHHHHhcccCCCCCCc
Q psy6046         308 LGDMAISLGRSKEKLYGFKCLSKSQEVLNLYKSMKD-INNICIDEIIKNINDNKGTWPS  365 (379)
Q Consensus       308 ~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~  365 (379)
                      +.+.|..+|.+     |.|.++ .+++.+.+..... ....+++++++.++.++.+-++
T Consensus        98 ~~~aF~~~D~d-----~~G~Is-~~e~~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~Is  150 (162)
T d1topa_          98 LANCFRIFDKN-----ADGFID-IEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRID  150 (162)
T ss_dssp             HHHHHHHHCTT-----CSSCBC-HHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBC
T ss_pred             HHHHHHHHCCC-----CCCCCc-HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCCcEE
Confidence            34678888999     888888 8888888776544 5667788888888776655443