Query psy6048
Match_columns 285
No_of_seqs 151 out of 1293
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 01:11:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkl_A MU-type opioid receptor 46.1 28 0.00096 30.9 5.6 94 2-97 4-103 (464)
2 2ks1_B Epidermal growth factor 37.3 38 0.0013 20.5 3.4 31 15-45 8-39 (44)
3 2ks9_A Substance-P receptor; w 34.9 43 0.0015 28.7 4.8 77 19-97 36-119 (364)
4 3rze_A Histamine H1 receptor, 30.4 82 0.0028 27.7 6.0 79 17-97 10-95 (452)
5 2l2t_A Receptor tyrosine-prote 27.2 1.1E+02 0.0037 18.5 4.9 31 16-46 8-39 (44)
6 1iij_A ERBB-2 receptor protein 27.0 95 0.0032 17.8 3.8 28 17-44 4-34 (35)
7 2jwa_A Receptor tyrosine-prote 26.9 1.1E+02 0.0038 18.5 4.7 13 34-46 28-40 (44)
8 3eml_A Human adenosine A2A rec 24.3 99 0.0034 27.4 5.4 79 17-97 23-106 (488)
9 1u19_A Rhodopsin; G protein-co 22.9 1.5E+02 0.005 24.8 6.0 77 19-97 42-125 (349)
10 3uon_A Human M2 muscarinic ace 22.9 1.2E+02 0.004 26.8 5.6 78 18-97 26-110 (467)
11 2z73_A Rhodopsin; visual pigme 22.5 1.3E+02 0.0044 26.6 5.8 76 19-96 38-121 (448)
No 1
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=46.09 E-value=28 Score=30.92 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=43.2
Q ss_pred CCcccceeeEeecCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhh----ccc-
Q psy6048 2 STKMSLSQVYLKYESHWAIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFV----LVM- 76 (285)
Q Consensus 2 ~~c~~~~~~~l~~~~~~~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~----~~~- 76 (285)
++|.+.+......+-...++..+++.+|++..+.++.++.++++.+ +..+-.+.++-+.-++.+....+. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~--~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~ 81 (464)
T 4dkl_A 4 SLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMK--TATNIYIFNLALADALATSTLPFQSVNYLMGT 81 (464)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444333333345566677778888888877777777665433 223333333333332222211111 111
Q ss_pred -cCCcceeeheehhhhhHHHHH
Q psy6048 77 -KPTDIVCGVQRFGTGFCFTVV 97 (285)
Q Consensus 77 -~pt~~~C~~r~~~~~lgftl~ 97 (285)
...+..|.+..++..++....
T Consensus 82 ~~~~~~~C~~~~~~~~~~~~~s 103 (464)
T 4dkl_A 82 WPFGNILCKIVISIDYYNMFTS 103 (464)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHHHHHHHH
Confidence 125678988876655555443
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.27 E-value=38 Score=20.54 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Q psy6048 15 ESHWAIGAMGLSTMGILITAFI-GLVFIRHND 45 (285)
Q Consensus 15 ~~~~~i~~~~la~lgil~~~~~-~~~~~~~r~ 45 (285)
++..+|+..++..+..+..+.. +.+++++|+
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3444455555554433333333 334444443
No 3
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=34.93 E-value=43 Score=28.67 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHh---hc--cc--cCCcceeeheehhhh
Q psy6048 19 AIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTF---VL--VM--KPTDIVCGVQRFGTG 91 (285)
Q Consensus 19 ~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~---~~--~~--~pt~~~C~~r~~~~~ 91 (285)
.+...+++.+|++....++.++.++|+.+ +.++-.+.++-+..++.+..... .. .. ...+..|....++..
T Consensus 36 ~~~~~~i~~~gi~gN~lvi~vi~~~~~l~--~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~ 113 (364)
T 2ks9_A 36 AAAYTVIVVTSVVGNVVVMWIILAHKRMR--TVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPI 113 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHH
Confidence 55566777888888887777777766533 22333333332222222111111 11 11 134678988776655
Q ss_pred hHHHHH
Q psy6048 92 FCFTVV 97 (285)
Q Consensus 92 lgftl~ 97 (285)
.+....
T Consensus 114 ~~~~~s 119 (364)
T 2ks9_A 114 AAVFAS 119 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 4
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=30.37 E-value=82 Score=27.71 Aligned_cols=79 Identities=4% Similarity=-0.066 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhhcc-----c--cCCcceeeheehh
Q psy6048 17 HWAIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVLV-----M--KPTDIVCGVQRFG 89 (285)
Q Consensus 17 ~~~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~~~-----~--~pt~~~C~~r~~~ 89 (285)
...+++.+++.+|++..+.++.++.++++.+ +..+-.+.++-+..++.+........ . ...+..|.+..++
T Consensus 10 ~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~--~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 87 (452)
T 3rze_A 10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLH--TVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSM 87 (452)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHHCSTTC--CGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHH
Confidence 4566777888888888888877777766543 33444444443333333222111111 1 1246789887766
Q ss_pred hhhHHHHH
Q psy6048 90 TGFCFTVV 97 (285)
Q Consensus 90 ~~lgftl~ 97 (285)
..++....
T Consensus 88 ~~~~~~~s 95 (452)
T 3rze_A 88 DYVASTAS 95 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.17 E-value=1.1e+02 Score=18.53 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy6048 16 SHWAIGAMGLSTMGILITAFI-GLVFIRHNDT 46 (285)
Q Consensus 16 ~~~~i~~~~la~lgil~~~~~-~~~~~~~r~~ 46 (285)
+..+|+..++..+..+..+.. +.+++++|+.
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 444555555554333333333 3344554443
No 6
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.01 E-value=95 Score=17.82 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q psy6048 17 HWAIGAMGLSTMGILITAFI---GLVFIRHN 44 (285)
Q Consensus 17 ~~~i~~~~la~lgil~~~~~---~~~~~~~r 44 (285)
+......+.+++|+++.+++ .++++|+|
T Consensus 4 ~s~~~sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 4 ASPVTFIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHhheEEeec
Confidence 34445566677774433333 23455554
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.88 E-value=1.1e+02 Score=18.51 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=6.7
Q ss_pred HHHHHHHHHhcCC
Q psy6048 34 AFIGLVFIRHNDT 46 (285)
Q Consensus 34 ~~~~~~~~~~r~~ 46 (285)
...+++++++|+.
T Consensus 28 ~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 28 GVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHhheehhhh
Confidence 3344556666553
No 8
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=24.35 E-value=99 Score=27.43 Aligned_cols=79 Identities=6% Similarity=-0.051 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhhc---c--ccCCcceeeheehhhh
Q psy6048 17 HWAIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVL---V--MKPTDIVCGVQRFGTG 91 (285)
Q Consensus 17 ~~~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~~---~--~~pt~~~C~~r~~~~~ 91 (285)
...++..+++++|++..+.++.++.++++.+ +..+-.+.++-+..++.+....... . ....+..|....++..
T Consensus 23 ~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~--~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~ 100 (488)
T 3eml_A 23 VYITVELAIAVLAILGNVLVCWAVWLNSNLQ--NVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVL 100 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC--SSHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4556667778888888887777776665432 2233333333333322221111111 1 1234567887776655
Q ss_pred hHHHHH
Q psy6048 92 FCFTVV 97 (285)
Q Consensus 92 lgftl~ 97 (285)
++....
T Consensus 101 ~~~~~s 106 (488)
T 3eml_A 101 VLTQSS 106 (488)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 9
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=22.93 E-value=1.5e+02 Score=24.81 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhhcc-----c--cCCcceeeheehhhh
Q psy6048 19 AIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVLV-----M--KPTDIVCGVQRFGTG 91 (285)
Q Consensus 19 ~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~~~-----~--~pt~~~C~~r~~~~~ 91 (285)
++...+++.+|++.....+.++.++++.+ +.++-.+.++-+..++.+........ + ...+..|....++..
T Consensus 42 ~~~~~~i~~~gi~gN~lvi~~i~~~~~~~--~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 119 (349)
T 1u19_A 42 AAYMFLLIMLGFPINFLTLYVTVQHKKLR--TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFAT 119 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHheEeehhhhhhhc--CchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHH
Confidence 34556677778887777777777666543 22333333333322222222111111 1 124668888766655
Q ss_pred hHHHHH
Q psy6048 92 FCFTVV 97 (285)
Q Consensus 92 lgftl~ 97 (285)
.+....
T Consensus 120 ~~~~~s 125 (349)
T 1u19_A 120 LGGEIA 125 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 10
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=22.89 E-value=1.2e+02 Score=26.78 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhhcc-----c--cCCcceeeheehhh
Q psy6048 18 WAIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVLV-----M--KPTDIVCGVQRFGT 90 (285)
Q Consensus 18 ~~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~~~-----~--~pt~~~C~~r~~~~ 90 (285)
..++..+++.+|++..+.++.++.++++.+ +..+-.+.++-+..++.+........ . ...+..|.+..++.
T Consensus 26 ~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~--~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 103 (467)
T 3uon_A 26 IVLVAGSLSLVTIIGNILVMVSIKVNRHLQ--TVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALD 103 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGC--SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHheeeeeecCccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHHH
Confidence 455566677788887777777666655432 23333333333333332222111111 1 13467898877665
Q ss_pred hhHHHHH
Q psy6048 91 GFCFTVV 97 (285)
Q Consensus 91 ~lgftl~ 97 (285)
.+.....
T Consensus 104 ~~~~~~s 110 (467)
T 3uon_A 104 YVVSNAS 110 (467)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 11
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=22.46 E-value=1.3e+02 Score=26.59 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHh----h--ccc--cCCcceeeheehhh
Q psy6048 19 AIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTF----V--LVM--KPTDIVCGVQRFGT 90 (285)
Q Consensus 19 ~i~~~~la~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~----~--~~~--~pt~~~C~~r~~~~ 90 (285)
++...+++.+|++..+.++.++.++|+.+ +.++-.+.++-+..++.+....+ . +.. ...+..|....++.
T Consensus 38 ~i~~~ii~i~gi~gN~lvi~vi~~~~~~~--~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 115 (448)
T 2z73_A 38 GIFIGICGIIGCGGNGIVIYLFTKTKSLQ--TPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIG 115 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTC--STTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhhhhccccC--CccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHH
Confidence 45556667777777777777766665433 23333333333333332222100 0 011 12356788776655
Q ss_pred hhHHHH
Q psy6048 91 GFCFTV 96 (285)
Q Consensus 91 ~lgftl 96 (285)
..+...
T Consensus 116 ~~~~~~ 121 (448)
T 2z73_A 116 GIFGFM 121 (448)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
Done!