Query psy6048
Match_columns 285
No_of_seqs 151 out of 1293
Neff 8.2
Searched_HMMs 13730
Date Sat Aug 17 01:11:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 49.6 12 0.00091 29.8 5.8 29 19-47 41-69 (348)
2 d1y5ic1 f.21.3.1 (C:1-225) Res 9.1 1.8E+02 0.013 21.7 4.6 48 26-73 95-142 (225)
3 d2axtz1 f.17.5.1 (Z:1-62) Phot 8.4 1.1E+02 0.0082 18.3 2.4 26 205-233 17-42 (62)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 5.2 1.7E+02 0.012 19.3 2.4 22 21-42 6-27 (158)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.4 4.6E+02 0.034 16.7 4.2 24 24-47 41-64 (107)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 3.8 56 0.004 21.1 -1.3 20 28-47 28-47 (91)
7 d1q90r_ f.23.12.1 (R:) ISP sub 3.6 3.3E+02 0.024 14.5 2.2 18 52-69 8-25 (39)
8 d1x4la1 g.39.1.3 (A:8-36) Four 3.3 83 0.0061 15.8 -0.6 11 222-232 9-19 (29)
9 d2hjqa1 a.140.3.2 (A:50-103) H 3.2 2.5E+02 0.018 15.6 1.4 17 216-233 28-45 (54)
10 d1k18a_ g.67.1.1 (A:) Zinc fin 2.9 1.4E+02 0.01 15.2 0.0 13 215-227 9-21 (31)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=49.64 E-value=12 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy6048 19 AIGAMGLSTMGILITAFIGLVFIRHNDTP 47 (285)
Q Consensus 19 ~i~~~~la~lgil~~~~~~~~~~~~r~~~ 47 (285)
+..+.++.++|++.-+.++.++.++|+.+
T Consensus 41 ~~~~~ii~v~gi~gN~lvi~vi~~~k~lr 69 (348)
T d1u19a_ 41 AAYMFLLIMLGFPINFLTLYVTVQHKKLR 69 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHeehhhhccCCCC
Confidence 34455567778777777777777766533
No 2
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=9.06 E-value=1.8e+02 Score=21.70 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeecCcccHHHHHHHHHHHHHHHhh
Q psy6048 26 STMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFV 73 (285)
Q Consensus 26 a~lgil~~~~~~~~~~~~r~~~vvk~s~~~l~~~lL~g~~l~~~~~~~ 73 (285)
...|++..+.+....+|+...|.+|..+..-.+++|..+...-.+.+.
T Consensus 95 ~i~g~l~liG~~~ll~RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~ 142 (225)
T d1y5ic1 95 GASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLL 142 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666777777777777766665555555443
No 3
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.39 E-value=1.1e+02 Score=18.31 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHhhhheeecCCCCCCccchhhhHHH
Q psy6048 205 VLIVVCTVYAVLTRNIPEAFNESKHIGFT 233 (285)
Q Consensus 205 ~Llli~~~la~~~R~~p~~fnEsk~I~~s 233 (285)
+++++|.=.+|-+ ||++.++|.+.++
T Consensus 17 F~lVVgVPV~~AS---P~gW~~sK~lvfs 42 (62)
T d2axtz1 17 FVMVIGVPVAYAS---PQDWDRSKQLIFL 42 (62)
T ss_dssp HHHHHHHHHHHHC---CTTTTHHHHHHHH
T ss_pred HHHheeceEEEEC---CCcccccCceEEE
Confidence 3445555444443 6777777776543
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.17 E-value=1.7e+02 Score=19.31 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6048 21 GAMGLSTMGILITAFIGLVFIR 42 (285)
Q Consensus 21 ~~~~la~lgil~~~~~~~~~~~ 42 (285)
.+++++.+|++.++.+-.+.-.
T Consensus 6 LlVViaIIgILaaia~P~~~~~ 27 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899988887665433
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.37 E-value=4.6e+02 Score=16.67 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCc
Q psy6048 24 GLSTMGILITAFIGLVFIRHNDTP 47 (285)
Q Consensus 24 ~la~lgil~~~~~~~~~~~~r~~~ 47 (285)
+...++++.........++||+++
T Consensus 41 i~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhccC
Confidence 333334443334444456666554
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=56 Score=21.13 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhcCCc
Q psy6048 28 MGILITAFIGLVFIRHNDTP 47 (285)
Q Consensus 28 lgil~~~~~~~~~~~~r~~~ 47 (285)
+++........+.+|||++|
T Consensus 28 v~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 33444444444557777654
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.65 E-value=3.3e+02 Score=14.50 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=12.0
Q ss_pred cCcccHHHHHHHHHHHHH
Q psy6048 52 AGRELSYVLLTGILMCYL 69 (285)
Q Consensus 52 s~~~l~~~lL~g~~l~~~ 69 (285)
.-+.+.+++++|.+..=.
T Consensus 8 grR~~MNLll~G~~~~~~ 25 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLPI 25 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhh
Confidence 346778888888765433
No 8
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.26 E-value=83 Score=15.80 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=7.0
Q ss_pred CCccchhhhHH
Q psy6048 222 EAFNESKHIGF 232 (285)
Q Consensus 222 ~~fnEsk~I~~ 232 (285)
..+.++|||.|
T Consensus 9 tg~gg~kyisF 19 (29)
T d1x4la1 9 SGLGGTKYISF 19 (29)
T ss_dssp CCSSSCSCEEC
T ss_pred cccCCceEEEe
Confidence 56667777653
No 9
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=3.19 E-value=2.5e+02 Score=15.62 Aligned_cols=17 Identities=41% Similarity=0.804 Sum_probs=11.0
Q ss_pred ecCCCCCCc-cchhhhHHH
Q psy6048 216 LTRNIPEAF-NESKHIGFT 233 (285)
Q Consensus 216 ~~R~~p~~f-nEsk~I~~s 233 (285)
..|+ |+.| ||+.-|+|.
T Consensus 28 lg~~-ps~fkn~~eria~i 45 (54)
T d2hjqa1 28 LGRN-PSDFKNADERIAYI 45 (54)
T ss_dssp HTCC-TTSCCSHHHHHHHH
T ss_pred cCCC-hhhhcChHHHHHHH
Confidence 3566 6666 787777653
No 10
>d1k18a_ g.67.1.1 (A:) Zinc finger domain of DNA polymerase-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=1.4e+02 Score=15.21 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=9.2
Q ss_pred eecCCCCCCccch
Q psy6048 215 VLTRNIPEAFNES 227 (285)
Q Consensus 215 ~~~R~~p~~fnEs 227 (285)
.++|++|-+|..+
T Consensus 9 ~RtRrlPl~fsr~ 21 (31)
T d1k18a_ 9 NRTRHLPLQFSRT 21 (31)
T ss_dssp HHHHSSSSTTCSS
T ss_pred ccccccccccccC
Confidence 4678888777644
Done!