RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6048
(285 letters)
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
This is a domain of seven transmembrane regions that
forms the C-terminus of some subclass 3
G-coupled-protein receptors. It is often associated with
a downstream cysteine-rich linker domain, NCD3G
pfam07562, which is the human sweet-taste receptor, and
the N-terminal domain, ANF_receptor pfam01094. The seven
TM regions assemble in such a way as to produce a
docking pocket into which such molecules as cyclamate
and lactisole have been found to bind and consequently
confer the taste of sweetness.
Length = 238
Score = 178 bits (455), Expect = 1e-55
Identities = 92/257 (35%), Positives = 137/257 (53%), Gaps = 20/257 (7%)
Query: 28 MGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVLVMKPTDIVCGVQR 87
+GIL+T + +VFIRH +TPVVKA+GRELS++LL G+L+C+L TF+ + KPTD C ++R
Sbjct: 1 LGILLTLLVLVVFIRHRNTPVVKASGRELSFLLLLGLLLCFLSTFLFIGKPTDATCILRR 60
Query: 88 FGTGFCFTVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQLIICTGMIITNFLLGFR 147
F G FT+ ++ LL KTNRI RIF + PK QL+I G+ + ++
Sbjct: 61 FLFGLGFTLCFSCLLVKTNRIVRIFKKSSPG-RPRLKSLPKGQLLIVLGLTLVQVIICV- 118
Query: 148 FGTGFCFTVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQLIICTGMITFGYPIVLI 207
+ VV TK K + + ++ GY +L+
Sbjct: 119 -----IWLVVDPPFPTKDIHPE----------KGEIILECNKGSNV-DFVLVLGYVGLLL 162
Query: 208 VVCTVYAVLTRNIPEAFNESKHIGFTMYTTCVIWLAFVPLYFGTGNHMPLRITTMSVTIS 267
++C A R +PE FNE+K I F+MY C+IW+AF+PLY T R ++ I
Sbjct: 163 LLCFFLAFKARKLPENFNEAKFITFSMYLFCIIWIAFIPLYLSTNG--KYRDAVLAFAIL 220
Query: 268 LSASVTVACLFSPKAHR 284
SA+ + C+F PK +
Sbjct: 221 ASATGLLLCIFIPKCYI 237
>gnl|CDD|218030 pfam04332, DUF475, Protein of unknown function (DUF475). Predicted
to be an integral membrane protein with multiple
membrane spans.
Length = 294
Score = 31.6 bits (72), Expect = 0.42
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 8/40 (20%)
Query: 10 VYLKYESHWAIGA----MGLSTMGI----LITAFIGLVFI 41
VYL++ +H+AIGA M LS I ++T +G+VFI
Sbjct: 241 VYLEHGAHYAIGALAVIMLLSIRRIEIPEVVTGLVGVVFI 280
>gnl|CDD|225452 COG2899, COG2899, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 346
Score = 29.3 bits (66), Expect = 2.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 10 VYLKYESHWAIGA----MGLSTMGI----LITAFIGLVFI 41
VYL++ +H+AIGA M LST ++T +G VFI
Sbjct: 288 VYLEHGAHYAIGALAVIMLLSTDRFHIPEVVTGLVGAVFI 327
>gnl|CDD|237583 PRK14013, PRK14013, hypothetical protein; Provisional.
Length = 338
Score = 28.6 bits (65), Expect = 3.5
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 10 VYLKYESHWAIGAMG---LSTMGI----LITAFIGLVFI 41
VYL++ +H+AIGA+ L ++G+ +IT IG+ I
Sbjct: 281 VYLEHGAHYAIGALAVIMLLSIGVHIPEVITGLIGVALI 319
>gnl|CDD|240386 PTZ00370, PTZ00370, STEVOR; Provisional.
Length = 296
Score = 28.1 bits (63), Expect = 6.1
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 11 YLKYESHWAIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLV 70
YLK+ H G + ++G + IGL KAA L T C
Sbjct: 164 YLKHLKHRCTGGICSCSLGSALLTLIGLAA--------AKAAAIALIASFGTSYSKCASS 215
Query: 71 TFVLVMKPTDIVCGVQRFGTGFCFTVVYA 99
+ M + + + G C + +
Sbjct: 216 ISIFNMLSEESIISALKAGGVTCVSGLAG 244
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 27.7 bits (62), Expect = 7.1
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 19 AIGAMGLSTMGILITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVL 74
+ M LS +G + G+ + N P V+ RE +++L+ IL + +L
Sbjct: 270 GMSWMILSLLGAIAVGLTGIAYF--NKNPHVELVDRETIFIVLSQILFHPWIAGIL 323
>gnl|CDD|147175 pfam04875, DUF645, Protein of unknown function, DUF645. This
family includes several uncharacterized proteins from
Vibrio cholerae.
Length = 59
Score = 25.5 bits (56), Expect = 7.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 146 FRFGTGFCFTVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQLII 193
F F G V+ +L SR N G+ + R F P SQL++
Sbjct: 9 FGFTKGCIIAVIVLSL-------SRTLNRGQLNLDRFEFWQPTSQLLV 49
Score = 25.2 bits (55), Expect = 9.7
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 82 VCGVQRFGTGF---CFTVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQLII 133
+ VQ GF C V L SR N G+ + R F P SQL++
Sbjct: 1 LLDVQHGQFGFTKGCIIAVIVLSL------SRTLNRGQLNLDRFEFWQPTSQLLV 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.141 0.430
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,408,198
Number of extensions: 1402314
Number of successful extensions: 1915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1898
Number of HSP's successfully gapped: 64
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)