RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6048
         (285 letters)



>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 163

 Score = 26.8 bits (59), Expect = 2.4
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 24/117 (20%)

Query: 31  LITAFIGLVFIRHNDTPVVKAAGRELSYVLLTGILMCYLVTFVLVMKPTDIVCG------ 84
           +I+AFI    IR +D     A    L+ ++  G    ++   +L+    DI         
Sbjct: 5   VISAFIKS--IRGSD---PDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIV 59

Query: 85  --------VQRFGTGFCF-----TVVYAALLTKTNRISRIFNAGKRTVKRPSFISPK 128
                     R G            +Y A+  K+N    IF A +        + P 
Sbjct: 60  VVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNSTKSIFKAMEAIKATNVSLVPN 116



 Score = 25.2 bits (55), Expect = 7.0
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 155 TVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQLIICTGMITFGYP 203
             +Y A+  K+N    IF A +        + P     +      +  P
Sbjct: 83  ASLYLAISPKSNSTKSIFKAMEAIKATNVSLVPN---HLKNNASNYLNP 128


>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458
           {Haemophilus influenzae [TaxId: 727]}
          Length = 184

 Score = 26.4 bits (58), Expect = 3.1
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 84  GVQRFGTGFCFTVVYAALLTKTNRISRIFNAGKRTVKRPSFISPKSQL 131
           G           ++Y ++  K+N +   FN  K+  K          L
Sbjct: 74  GAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHL 121


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
           562]}
          Length = 174

 Score = 25.9 bits (57), Expect = 4.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 249 FGTGNHMPLRITTMSVTISLSASVTVACLFS 279
             T N  PL + T ++    +A+  VA +FS
Sbjct: 109 VRTENWRPLFVKTETIIAGNAATALVALVFS 139


>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module,
           N1 and N2 domains {Salmonella typhimurium [TaxId:
           90371]}
          Length = 209

 Score = 25.8 bits (56), Expect = 5.9
 Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 3/93 (3%)

Query: 122 PSFISPKSQLIICTGMII---TNFLLGFRFGTGFCFTVVYAALLTKTNRISRIFNAGKRT 178
           P+ ISP       +G  I        G +   G     V    +    +           
Sbjct: 79  PTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPER 138

Query: 179 VKRPSFISPKSQLIICTGMITFGYPIVLIVVCT 211
           +     I  +  L        FG P +     T
Sbjct: 139 IVTALDIMTEGPLGGAAFNNEFGRPALTGYFRT 171


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 25.7 bits (56), Expect = 7.1
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 249 FGTGNHMPLRITTMSVTISLSASVTVACLFS 279
           + TGN  PL +   S  I    +     LF 
Sbjct: 219 YNTGNWGPLLLEVESWIIGGVVAGVAISLFG 249


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,549
Number of extensions: 47118
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.1 bits)