BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6049
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 39 NIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
N G+SGD FD NGD P RY I++FKEM ++++ VG + GEL+++
Sbjct: 432 NFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGELKMD 482
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 30/133 (22%)
Query: 20 IHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVG 79
+ + F P F P D+I KFD GDG RYN+ + ++ + G Y +++VG
Sbjct: 412 LKIQFTAP---FNPNKGADSIV-------KFDTFGDGMGRYNVFNLQQ-TGGKYSYLKVG 460
Query: 80 EYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGE 139
+ E L L++ P S CS PC + K G+
Sbjct: 461 HWAE-TLSLDVDS------------------IHWSRNSVPTSQCSDPCAPNEMKNMQPGD 501
Query: 140 SCCWHCFNCTQYH 152
CCW C C Y
Sbjct: 502 VCCWICIPCEPYE 514
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 41 AGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
G+SG++ FD GD P RY+I++ + Y++V VG + EG L ++
Sbjct: 428 VGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 476
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 42 GLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
G+SG++ FD GD P RY+I++ + Y++V VG + EG L ++
Sbjct: 434 GVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 481
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 20 IHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVG 79
+ ++F P F P D D+I KFD GDG RYN+ +F+ + G Y +++VG
Sbjct: 411 LKINFTAP---FNPNKDADSIV-------KFDTFGDGMGRYNVFNFQNVG-GKYSYLKVG 459
Query: 80 EYVE 83
+ E
Sbjct: 460 HWAE 463
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 37 NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNL 90
N N G +G F+ NGD P RY+I ++ + + + +G++ + EL+LN+
Sbjct: 422 NVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD-ELQLNI 474
>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From
Ehrlichia Chaffeensis, Seattle Structural Genomics
Center For Infectious Disease (Ssgcid)
Length = 108
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 147 NCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFG 187
+CTQY EPL+ WTG + + VC SF + IA+
Sbjct: 41 SCTQYTEPLMNWTG-----SHDTKQQVCLSFTTRELAIAYA 76
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 39 NIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNL 90
N G +G F+ NGD P RY+I ++ + + + +G++ + EL+LN+
Sbjct: 424 NFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTD-ELQLNI 474
>pdb|2NNR|A Chain A, Crystal Structure Of Chagasin, Cysteine Protease Inhibitor
From Trypanosoma Cruzi
pdb|2NNR|B Chain B, Crystal Structure Of Chagasin, Cysteine Protease Inhibitor
From Trypanosoma Cruzi
pdb|2OUL|B Chain B, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3CBJ|B Chain B, Chagasin-cathepsin B Complex
pdb|3CBK|B Chain B, Chagasin-Cathepsin B
pdb|3E1Z|A Chain A, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 110
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPR-PPESVCSLPCDRGQAKQ 134
V VGE VE +L N + F YF T P E F E+ PP+S L G
Sbjct: 16 VAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDS--KLLGAGGTEHF 73
Query: 135 YLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTR 167
++ ++ H N T Y P WTG H R
Sbjct: 74 HVTVKAAGTHAVNLT-YMRP---WTGPSHDSER 102
>pdb|2NQD|A Chain A, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 109
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPR-PPESVCSLPCDRGQAKQ 134
V VGE VE +L N + F YF T P E F E+ PP+S L G
Sbjct: 15 VAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDS--KLLGAGGTEHF 72
Query: 135 YLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTR 167
++ ++ H N T Y P WTG H R
Sbjct: 73 HVTVKAAGTHAVNLT-YMRP---WTGPSHDSER 101
>pdb|2FO8|A Chain A, Solution Structure Of The Trypanosoma Cruzi Cysteine
Protease Inhibitor Chagasin
Length = 111
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPR-PPESVCSLPCDRGQAKQ 134
V VGE VE +L N + F YF T P E F E+ PP+S L G
Sbjct: 17 VAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDS--KLLGAGGTEHF 74
Query: 135 YLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTR 167
++ ++ H N T Y P WTG H R
Sbjct: 75 HVTVKAAGTHAVNLT-YMRP---WTGPSHDSER 103
>pdb|2H7W|A Chain A, Crystal Structure Of Chagasin, The Endogenous Cysteine-
Protease Inhibitor From Trypanosoma Cruzi
pdb|2H7W|B Chain B, Crystal Structure Of Chagasin, The Endogenous Cysteine-
Protease Inhibitor From Trypanosoma Cruzi
Length = 131
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPR-PPESVCSLPCDRGQAKQ 134
V VGE VE +L N + F YF T P E F E+ PP+S L G
Sbjct: 37 VAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDS--KLLGAGGTEHF 94
Query: 135 YLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTR 167
++ ++ H N T Y P WTG H R
Sbjct: 95 HVTVKAAGTHAVNLT-YMRP---WTGPSHDSER 123
>pdb|2NN6|G Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 289
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 37 NDNIAGL----SGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGE 85
D++ G+ SGD FK D G PA + + F+ + + V+VG+ + G+
Sbjct: 128 GDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQ 180
>pdb|1N91|A Chain A, Solution Nmr Structure Of Protein Yggu From Escherichia
Coli. Northeast Structural Genomics Consortium Target
Er14.
pdb|1YH5|A Chain A, Solution Nmr Structure Of Protein Yggu From Escherichia
Coli. Northeast Structural Genomics Consortium Target
Er14
Length = 108
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 28 RVKFPPRADNDNIAGLSGDKFKFDANG---DGPARYNIIHF 65
R+ P+A D+I GL GD+ K DG A +++ F
Sbjct: 18 RLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKF 58
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 54 GDGPARYNIIHFKEMSPGSYEWVRVG----------EYVEGELRLNLSGKFGPYFVEITD 103
GDG + H +SP + W G E + +R L+ + GP V+
Sbjct: 30 GDGGEPSQLPHCPSVSPSAQPWTHPGQSQLFADLSREELTAVMRF-LTQRLGPGLVDAAQ 88
Query: 104 GMPQE-IQFKAEHPRPPESVCSLPCDRG 130
P + F E PP++ DRG
Sbjct: 89 ARPSDNCVFSVELQLPPKAAALAHLDRG 116
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 54 GDGPARYNIIHFKEMSPGSYEWVRVG----------EYVEGELRLNLSGKFGPYFVEITD 103
GDG + H +SP + W G E + +R L+ + GP V+
Sbjct: 2 GDGGEPSQLPHCPSVSPSAQPWTHPGQSQLFADLSREELTAVMRF-LTQRLGPGLVDAAQ 60
Query: 104 GMPQE-IQFKAEHPRPPESVCSLPCDRG 130
P + F E PP++ DRG
Sbjct: 61 ARPSDNCVFSVELQLPPKAAALAHLDRG 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,368,129
Number of Sequences: 62578
Number of extensions: 382305
Number of successful extensions: 839
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 19
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)