Query psy6049
Match_columns 241
No_of_seqs 216 out of 1323
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 01:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1056|consensus 100.0 9.4E-44 2E-48 356.5 10.4 198 5-222 386-761 (878)
2 cd06364 PBP1_CaSR Ligand-bindi 99.7 5E-18 1.1E-22 164.6 8.6 86 6-91 403-506 (510)
3 cd06365 PBP1_Pheromone_recepto 99.7 1.5E-17 3.2E-22 159.3 8.1 86 6-91 366-465 (469)
4 cd06376 PBP1_mGluR_groupIII Li 99.6 3E-15 6.5E-20 142.6 8.1 85 6-91 366-459 (463)
5 cd06375 PBP1_mGluR_groupII Lig 99.6 3.9E-15 8.6E-20 142.3 7.7 79 5-83 360-454 (458)
6 cd06374 PBP1_mGluR_groupI Liga 99.5 7.1E-14 1.5E-18 133.6 7.7 85 6-90 378-471 (472)
7 cd06361 PBP1_GPC6A_like Ligand 99.3 8E-12 1.7E-16 117.8 7.8 76 6-83 315-393 (403)
8 cd06362 PBP1_mGluR Ligand bind 99.3 7.2E-12 1.6E-16 118.4 7.4 77 6-83 361-446 (452)
9 PF07562 NCD3G: Nine Cysteines 99.2 7.3E-12 1.6E-16 87.2 1.4 39 119-159 1-40 (54)
10 cd06379 PBP1_iGluR_NMDA_NR1 N- 99.0 3.1E-10 6.7E-15 104.9 6.6 80 6-91 279-371 (377)
11 PF00003 7tm_3: 7 transmembran 98.9 2.3E-10 5E-15 99.5 1.5 58 166-223 135-192 (238)
12 cd06363 PBP1_Taste_receptor Li 98.9 5.2E-09 1.1E-13 98.1 8.6 84 6-91 315-405 (410)
13 cd06367 PBP1_iGluR_NMDA N-term 98.8 6.2E-09 1.3E-13 95.5 5.8 79 6-91 264-357 (362)
14 cd06372 PBP1_GC_G_like Ligand- 98.3 1.1E-06 2.3E-11 81.6 5.7 75 6-83 308-385 (391)
15 cd06378 PBP1_iGluR_NMDA_NR2 N- 97.9 2.5E-05 5.5E-10 73.0 6.5 77 6-89 265-356 (362)
16 cd06390 PBP1_iGluR_AMPA_GluR1 97.8 2.6E-05 5.6E-10 73.0 5.9 72 6-83 271-359 (364)
17 cd06392 PBP1_iGluR_delta_1 N-t 97.8 2.6E-05 5.5E-10 74.4 5.8 75 6-83 303-394 (400)
18 cd06377 PBP1_iGluR_NMDA_NR3 N- 97.7 5.7E-05 1.2E-09 71.7 6.3 82 6-88 275-376 (382)
19 cd06370 PBP1_Speract_GC_like L 97.6 4.4E-05 9.6E-10 71.5 3.6 61 6-67 323-383 (404)
20 cd06391 PBP1_iGluR_delta_2 N-t 97.6 0.00011 2.4E-09 69.7 6.0 77 6-83 303-394 (400)
21 cd06389 PBP1_iGluR_AMPA_GluR2 97.5 0.00017 3.6E-09 67.4 6.3 72 6-83 276-364 (370)
22 cd06373 PBP1_NPR_like Ligand b 97.5 0.0002 4.2E-09 66.6 5.6 74 6-83 315-388 (396)
23 cd06388 PBP1_iGluR_AMPA_GluR4 97.4 0.00033 7.1E-09 65.6 6.2 72 6-83 277-365 (371)
24 cd06385 PBP1_NPR_A Ligand-bind 97.3 0.00048 1E-08 64.3 6.1 74 6-83 317-390 (405)
25 cd06386 PBP1_NPR_C_like Ligand 97.3 0.00065 1.4E-08 63.5 6.7 74 6-83 305-378 (387)
26 cd06387 PBP1_iGluR_AMPA_GluR3 97.2 0.00049 1.1E-08 64.8 5.8 72 6-83 279-367 (372)
27 cd06380 PBP1_iGluR_AMPA N-term 97.2 0.00078 1.7E-08 62.2 6.1 72 6-83 283-377 (382)
28 KOG4440|consensus 96.9 0.00078 1.7E-08 67.3 3.9 82 5-91 289-384 (993)
29 PF01094 ANF_receptor: Recepto 96.9 0.00033 7.2E-09 62.3 1.2 60 6-66 281-348 (348)
30 cd06352 PBP1_NPR_GC_like Ligan 96.8 0.0019 4.2E-08 59.5 5.5 72 6-82 309-380 (389)
31 cd06393 PBP1_iGluR_Kainate_Glu 96.8 0.0017 3.8E-08 60.4 4.8 72 6-83 296-377 (384)
32 cd06384 PBP1_NPR_B Ligand-bind 96.6 0.006 1.3E-07 57.0 6.8 74 6-83 318-391 (399)
33 cd06369 PBP1_GC_C_enterotoxin_ 96.3 0.0078 1.7E-07 57.2 5.8 72 6-83 293-364 (380)
34 cd06371 PBP1_sensory_GC_DEF_li 94.2 0.067 1.5E-06 49.9 4.7 58 6-66 302-359 (382)
35 cd06381 PBP1_iGluR_delta_like 92.3 0.17 3.7E-06 47.3 4.3 52 31-83 306-358 (363)
36 KOG1055|consensus 91.5 0.12 2.7E-06 53.1 2.5 48 173-220 631-680 (865)
37 cd06350 PBP1_GPCR_family_C_lik 89.8 0.68 1.5E-05 41.6 5.5 36 47-83 304-339 (348)
38 cd06383 PBP1_iGluR_AMPA_Like N 89.4 0.4 8.6E-06 45.0 3.8 60 6-67 282-360 (368)
39 cd06366 PBP1_GABAb_receptor Li 78.9 2.8 6.1E-05 37.9 4.3 41 37-83 301-342 (350)
40 KOG1055|consensus 72.0 1.3 2.9E-05 45.8 0.3 71 6-83 348-429 (865)
41 KOG1054|consensus 71.9 5.8 0.00013 40.4 4.6 73 6-83 306-394 (897)
42 cd06382 PBP1_iGluR_Kainate N-t 65.9 6.4 0.00014 35.2 3.3 36 42-83 286-322 (327)
43 cd06342 PBP1_ABC_LIVBP_like Ty 64.4 5.1 0.00011 35.6 2.3 38 27-65 296-334 (334)
44 cd06348 PBP1_ABC_ligand_bindin 58.3 7.5 0.00016 35.0 2.4 51 6-57 283-337 (344)
45 PRK15404 leucine ABC transport 55.5 15 0.00032 34.1 3.9 39 27-66 321-360 (369)
46 PHA02637 TNF-alpha-receptor-li 54.1 10 0.00022 31.0 2.2 32 121-152 41-72 (127)
47 PF07699 GCC2_GCC3: GCC2 and G 54.0 8 0.00017 25.6 1.4 27 121-152 9-35 (48)
48 KOG1053|consensus 52.7 21 0.00046 38.1 4.7 78 5-89 301-393 (1258)
49 COG5472 Predicted small integr 41.4 15 0.00033 30.4 1.4 27 190-216 77-104 (164)
50 PF00090 TSP_1: Thrombospondin 36.3 20 0.00043 22.9 1.1 16 121-136 7-22 (49)
51 COG4736 CcoQ Cbb3-type cytochr 32.3 30 0.00064 24.7 1.5 33 182-215 11-43 (60)
52 cd06394 PBP1_iGluR_Kainate_KA1 27.5 87 0.0019 29.0 4.2 36 42-83 291-327 (333)
53 cd06338 PBP1_ABC_ligand_bindin 26.2 47 0.001 29.7 2.1 38 27-65 308-345 (345)
54 cd06368 PBP1_iGluR_non_NMDA_li 25.8 91 0.002 27.5 3.9 32 47-83 287-319 (324)
55 smart00209 TSP1 Thrombospondin 25.3 48 0.001 21.4 1.5 15 121-135 8-22 (53)
56 cd06345 PBP1_ABC_ligand_bindin 24.2 35 0.00075 30.7 0.9 49 8-59 291-339 (344)
57 cd06332 PBP1_aromatic_compound 23.1 86 0.0019 27.5 3.2 47 7-58 280-326 (333)
58 PF00020 TNFR_c6: TNFR/NGFR cy 22.7 64 0.0014 20.1 1.7 25 127-152 1-25 (39)
59 COG0683 LivK ABC-type branched 20.6 1.9E+02 0.0042 26.6 5.1 56 6-67 297-354 (366)
60 cd08902 START_STARD4-like Lipi 20.4 90 0.0019 27.5 2.6 25 126-152 136-160 (202)
No 1
>KOG1056|consensus
Probab=100.00 E-value=9.4e-44 Score=356.47 Aligned_cols=198 Identities=37% Similarity=0.705 Sum_probs=173.2
Q ss_pred ehHHHHHhhhhhhhC--------CCcCCCC-CceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeE
Q psy6049 5 ITYFVMVTYLPNKLG--------IHVDFNT-PRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~--------~~~~~~~-~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~ 75 (241)
-|||.||||||+|.+ .|++|.. ++|+|.+|+++|+|.+..|+ +.||+|||++++|||+||+...+. +.+
T Consensus 386 ~aVya~A~aLh~m~~~lc~~~~~~C~~m~~~dg~~L~~~l~~vnF~~~~~~-v~Fd~~gD~~~~y~I~~~~~~~~~-~~y 463 (878)
T KOG1056|consen 386 DAVYAMAHALHNMHQDLCPGTSGLCSAMKAIDGSLLLKYLLNVNFTGPAGS-VRFDENGDGPGRYDILNYQLTNGS-YTY 463 (878)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCcCccccCHHHHHhhhheeEEecCCCc-eeecCCCCCccceeEEEeeccCCC-ccc
Confidence 389999999999974 3455554 79999999999999999887 999999999999999999876544 889
Q ss_pred EEEEEEECceEEEecCCCCCCcceeecCCCCceeecCCCCCCCCcccccCcCCCCceeeeeCCCCeeEEccccCCCC---
Q psy6049 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH--- 152 (241)
Q Consensus 76 v~VG~~~~~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~SvCS~~C~pG~rK~~~~g~~CCw~Cv~C~~ge--- 152 (241)
..||+|++ .+.+|.+ .+.|..+..++|.|+||++|.||++|..+++.+|||.|.+|+++|
T Consensus 464 ~~vg~w~~-~~~l~i~----------------~~~w~~~~~~v~~S~CS~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~ 526 (878)
T KOG1056|consen 464 KEVGYWSE-GLSLNIE----------------DLDWTTKPSGVPKSVCSEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVN 526 (878)
T ss_pred eeeeeecc-cccccce----------------eeeeccCCCCCccccccCcCCcchhcccccCceeEEEcccCCCcceec
Confidence 99999986 3447777 899998888899999999999999999888778999999999988
Q ss_pred ------------cc------------------------------------------------------------------
Q psy6049 153 ------------EP------------------------------------------------------------------ 154 (241)
Q Consensus 153 ------------~P------------------------------------------------------------------ 154 (241)
||
T Consensus 527 d~~tc~~C~~~~wp~~~~tgc~~~~~~yl~W~~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~g 606 (878)
T KOG1056|consen 527 DEFTCSDCQLGQWPNASLTGCFDIPVSYLRWRSPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLG 606 (878)
T ss_pred CcceeccCCcCcCCCcccCCccccchhheeccccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHH
Confidence 11
Q ss_pred -------------------------------------cccccCC------------------------------------
Q psy6049 155 -------------------------------------LLTWTGK------------------------------------ 161 (241)
Q Consensus 155 -------------------------------------il~KT~~------------------------------------ 161 (241)
|++||||
T Consensus 607 i~l~y~~tf~~i~eP~~~~C~lrr~~~gl~f~i~ysalltKtnrI~rif~~~~k~~~~~~~is~~~q~~i~~~l~~iQlv 686 (878)
T KOG1056|consen 607 IFLCYASTFFFIAEPTDISCRLRRTFLGLGFTICYSALLTKTNRIARIFEFSKKSIQRPRFISPWSQVLITFILIGIQLV 686 (878)
T ss_pred HHHHHhhhheeEecCCCceeeEeeeecchhHHHHHHHHHHHHHHHHHHHhcccccccccceeccchHHHHHHHHhhheeE
Confidence 9999988
Q ss_pred ---------C-----CCCC-CCceEEEeccCChhhhHHHHHHHHHHHHHHhhheeeccCCCCCCCcceeEEEEeee
Q psy6049 162 ---------P-----HYPT-REDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTV 222 (241)
Q Consensus 162 ---------~-----~~~~-~~~iil~C~~~s~~~~~~~l~y~~lL~l~c~~~Af~~R~lP~nFNEAK~I~Fs~~~ 222 (241)
+ .|+. ++.+++.|++ +..+|++.++|+++|+++||+||||+|++||||||||||+|+|+.
T Consensus 687 i~~~Wlv~~~p~~~~~~~~~~~~~~L~C~~-~~~~f~~~l~Y~~lL~~~Ct~yA~ktR~~peNFNEaK~I~Ftmy~ 761 (878)
T KOG1056|consen 687 ICVSWLVVEPPGSVRTYVSRREVVILKCTE-VDLGFLLSLGYSGLLILSCTVYAFKTRNLPENFNEAKFIGFTMYT 761 (878)
T ss_pred EEEEEEeecCCccccccccccceEEEEecC-cchHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhhhhHHH
Confidence 1 2333 3448999997 899999999999999999999999999999999999999999975
No 2
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.73 E-value=5e-18 Score=164.56 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=77.0
Q ss_pred hHHHHHhhhhhhhCCCcC-------CCC-----CceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcC-CCc
Q psy6049 6 TYFVMVTYLPNKLGIHVD-------FNT-----PRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMS-PGS 72 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~-------~~~-----~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~-~g~ 72 (241)
|||+||||||+|+.|+.+ .|+ .+|||++||+||+|++.+|++|.||+|||+.++|||+|||..+ +|.
T Consensus 403 AVyAvAhaLh~~~~c~~~~~~~~~~~c~~~~~~~~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~q~~~~~~~ 482 (510)
T cd06364 403 AVYSIAHALQDIYTCTPGKGLFTNGSCADIKKVEAWQVLKHLRHLNFTDNMGEQVRFDEGGDLVGNYSIINWHLSPEDGS 482 (510)
T ss_pred HHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCHHHHHHHHHhcEEecCCCCEEEEecCCCCccceeEEEeeecCCCCc
Confidence 899999999999998753 464 4899999999999999999999999999999999999999866 688
Q ss_pred eeEEEEEEEEC-----ceEEEecC
Q psy6049 73 YEWVRVGEYVE-----GELRLNLS 91 (241)
Q Consensus 73 ~~~v~VG~~~~-----~~l~in~~ 91 (241)
..+++||.|+. .+|.|+++
T Consensus 483 ~~~v~VG~~~~~~~~~~~l~i~~~ 506 (510)
T cd06364 483 VVFKEVGYYNVYAKKGERLFINES 506 (510)
T ss_pred EEEEEEEEEcCCCCCCceEEeccc
Confidence 89999999984 46888887
No 3
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.71 E-value=1.5e-17 Score=159.29 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=76.1
Q ss_pred hHHHHHhhhhhhhCCCcCCC---------CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN---------TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWV 76 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~---------~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v 76 (241)
|||++|||||++|+|..+.| ..+|||++||+||+|++.+|++|.||+|||+.++|||+|||...++...++
T Consensus 366 AVya~AhALh~~l~c~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~~~~~~~~ 445 (469)
T cd06365 366 AVYAVAHALHEMLLQQVETQSENNGKRLIFLPWQLHSFLKNIQFKNPAGDEVNLNQKRKLDTEYDILNYWNFPQGLGLKV 445 (469)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCCccHHHHHHHHHhccccCCCCCEEEecCCCCcCceeeEEEEEECCCCCEEEE
Confidence 89999999999999865433 258999999999999999999999999999999999999997666788999
Q ss_pred EEEEEEC-----ceEEEecC
Q psy6049 77 RVGEYVE-----GELRLNLS 91 (241)
Q Consensus 77 ~VG~~~~-----~~l~in~~ 91 (241)
+||+|+. .+|.|+++
T Consensus 446 ~VG~~~~~~~~~~~l~i~~~ 465 (469)
T cd06365 446 KVGEFSPQAPSGQQLSISEE 465 (469)
T ss_pred EEEEEeCCCCCCcEEEEehh
Confidence 9999984 36888887
No 4
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.58 E-value=3e-15 Score=142.56 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=73.9
Q ss_pred hHHHHHhhhhhhh--CCCcCC--C-----CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEE
Q psy6049 6 TYFVMVTYLPNKL--GIHVDF--N-----TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWV 76 (241)
Q Consensus 6 ~~~~ma~aLh~~l--~~~~~~--~-----~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v 76 (241)
|||+||||||+++ +|...+ | .++|+|++||++|+|+|.+|+.|.||++||..++|||+|||...++...++
T Consensus 366 AVyaiA~ALh~l~~~~c~~~~~~C~~~~~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~~~Ydi~n~q~~~~~~~~~~ 445 (463)
T cd06376 366 AVYAMAHALHSMHKDLCPGYTGVCPEMEPADGKKLLKYIRAVNFNGSAGTPVMFNENGDAPGRYDIFQYQITNTSSPGYR 445 (463)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCccCCCCCHHHHHHHHHhCCccCCCCCeEEeCCCCCCCCceEEEEEEecCCCceeEE
Confidence 8999999999998 442222 4 257899999999999999999999999999999999999998667788899
Q ss_pred EEEEEECceEEEecC
Q psy6049 77 RVGEYVEGELRLNLS 91 (241)
Q Consensus 77 ~VG~~~~~~l~in~~ 91 (241)
+||.|++ .+.|+++
T Consensus 446 ~VG~w~~-~l~i~~~ 459 (463)
T cd06376 446 LIGQWTD-ELQLNIE 459 (463)
T ss_pred EEEEECC-eeEEccc
Confidence 9999985 7888887
No 5
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.57 E-value=3.9e-15 Score=142.34 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=67.5
Q ss_pred ehHHHHHhhhhhhh--CCCcCC--C-----CCceecc-cccccceec-----CCCCCeEEeccCCCCcceeeEEEeEEcC
Q psy6049 5 ITYFVMVTYLPNKL--GIHVDF--N-----TPRVKFP-PRADNDNIA-----GLSGDKFKFDANGDGPARYNIIHFKEMS 69 (241)
Q Consensus 5 ~~~~~ma~aLh~~l--~~~~~~--~-----~~~~~l~-~yL~~v~F~-----~~~g~~v~Fd~nGd~~~~YdI~n~~~~~ 69 (241)
-|||++|||||+|+ +|.... | ..+|+|+ +||++|+|. +.+|+.|.||+|||+.++|||+|||...
T Consensus 360 ~AVyA~AhaLh~~l~~~c~~~~~~c~~~~~~~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~ 439 (458)
T cd06375 360 NAVYAMAHALHNMQRDLCPNTTKLCDAMKPLDGKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGLGRYNIFNYQRTG 439 (458)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhccccccccCCCCCCeeEECCCCCCCcceEEEEEEEcC
Confidence 38999999999999 553222 4 3579999 599999999 9999999999999999999999999765
Q ss_pred CC-ceeEEEEEEEEC
Q psy6049 70 PG-SYEWVRVGEYVE 83 (241)
Q Consensus 70 ~g-~~~~v~VG~~~~ 83 (241)
++ ...+++||+|+.
T Consensus 440 ~~~~~~~~~VG~w~~ 454 (458)
T cd06375 440 NSYGYRYVGVGAWAN 454 (458)
T ss_pred CCCcEEEEEEEEEec
Confidence 55 788999999964
No 6
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.47 E-value=7.1e-14 Score=133.60 Aligned_cols=85 Identities=25% Similarity=0.448 Sum_probs=72.0
Q ss_pred hHHHHHhhhhhhhC--CCcC--CC-----CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEE
Q psy6049 6 TYFVMVTYLPNKLG--IHVD--FN-----TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWV 76 (241)
Q Consensus 6 ~~~~ma~aLh~~l~--~~~~--~~-----~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v 76 (241)
|||+||||||+++. |... .| ..+|+|+.||++++|.|.+|+.|.||++||+.+.|||+|||...++...++
T Consensus 378 AVyaiA~ALh~~~~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~~~ydI~n~~~~~~~~~~~~ 457 (472)
T cd06374 378 AIYAMAHGLHNMHQDLCPGHVGLCDAMKPIDGRKLLEYLLKTSFSGVSGEEVYFDENGDSPGRYDIMNLQYTEDLRFDYI 457 (472)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcCCCCCCHHHHHHHHHhCcccCCCCCeEEEcCCCCCCCceEEEEEEECCCCCEEEE
Confidence 89999999999984 3111 13 247899999999999999999999999999999999999998667788899
Q ss_pred EEEEEECceEEEec
Q psy6049 77 RVGEYVEGELRLNL 90 (241)
Q Consensus 77 ~VG~~~~~~l~in~ 90 (241)
+||.|++.+|.||.
T Consensus 458 ~VG~w~~~~l~~~~ 471 (472)
T cd06374 458 NVGSWHEGDLGIDD 471 (472)
T ss_pred EEEEEeCCcccccC
Confidence 99999876676653
No 7
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.27 E-value=8e-12 Score=117.81 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=65.8
Q ss_pred hHHHHHhhhhhhhCC--CcCC-CCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGI--HVDF-NTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~--~~~~-~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
|||+||||||++..+ |..+ ..++|+|+++|++++|.|. ++++.||+|||+.+.|||+||+. .+|...+++||.|+
T Consensus 315 AVyaiA~Al~~~~~~~~c~~~~~~~~~~l~~~L~~~~f~g~-~~~v~Fd~~gd~~~~y~I~~~~~-~~~~~~~~~vg~~~ 392 (403)
T cd06361 315 AVFALAHAIRDLCQERQCQNPNAFQPWELLGQLKNVTFEDG-GNMYHFDANGDLNLGYDVVLWKE-DNGHMTVTIMAEYD 392 (403)
T ss_pred HHHHHHHHHHHhccCCCCCCCCCcCHHHHHHHHheeEEecC-CceEEECCCCCCCcceEEEEeEe-cCCcEEEEEEEEEe
Confidence 899999999997643 2222 2468999999999999998 77899999999999999999997 77888999999998
Q ss_pred C
Q psy6049 83 E 83 (241)
Q Consensus 83 ~ 83 (241)
+
T Consensus 393 ~ 393 (403)
T cd06361 393 P 393 (403)
T ss_pred C
Confidence 7
No 8
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.27 E-value=7.2e-12 Score=118.40 Aligned_cols=77 Identities=31% Similarity=0.536 Sum_probs=65.5
Q ss_pred hHHHHHhhhhhhh--CCCcCC--C-----CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEE
Q psy6049 6 TYFVMVTYLPNKL--GIHVDF--N-----TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWV 76 (241)
Q Consensus 6 ~~~~ma~aLh~~l--~~~~~~--~-----~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v 76 (241)
|||++|||||+++ +|.... | .++|+|..+|++++|.|.+|+.|.||++||..+.|||+||+. .++...++
T Consensus 361 AV~a~A~AL~~~l~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~~~y~I~~~~~-~~~~~~~~ 439 (452)
T cd06362 361 AVYAMAHALHNMHRDLCPGTTGLCDAMKPIDGRKLLFYLRNVSFSGLAGGPVRFDANGDGPGRYDIFNYQR-TNGKYDYV 439 (452)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcCccCCCHHHHHHHHHhCCcCCCCCceEEECCCCCCCCceEEEEEEE-cCCceEEE
Confidence 7999999999998 332111 2 357899999999999999999999999999999999999986 44677899
Q ss_pred EEEEEEC
Q psy6049 77 RVGEYVE 83 (241)
Q Consensus 77 ~VG~~~~ 83 (241)
+||.|++
T Consensus 440 ~VG~w~~ 446 (452)
T cd06362 440 KVGSWKG 446 (452)
T ss_pred EEEEEec
Confidence 9999975
No 9
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=99.17 E-value=7.3e-12 Score=87.25 Aligned_cols=39 Identities=46% Similarity=1.055 Sum_probs=19.9
Q ss_pred CcccccCcCCCCceeeeeCCC-CeeEEccccCCCCccccccc
Q psy6049 119 PESVCSLPCDRGQAKQYLEGE-SCCWHCFNCTQYHEPLLTWT 159 (241)
Q Consensus 119 P~SvCS~~C~pG~rK~~~~g~-~CCw~Cv~C~~ge~Pil~KT 159 (241)
|.|+||++|+||++|..+++. .|||+|++|++|+ |..+|
T Consensus 1 P~S~CS~~C~pG~~k~~~~~~~~CCw~C~~C~~~~--is~~~ 40 (54)
T PF07562_consen 1 PSSVCSEPCPPGQRKKIQKGQPSCCWDCVPCPEGE--ISNQT 40 (54)
T ss_dssp ----SS----TTTEEEE--SSS-S--EEEE--TTE--EEE--
T ss_pred CccccCCCCCCCCEECccCCCcceEEEeecCCCCc--EECCC
Confidence 789999999999999988887 5999999999998 55555
No 10
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=99.04 E-value=3.1e-10 Score=104.88 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=64.7
Q ss_pred hHHHHHhhhhhhhCCCc-----CCCC-------CceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcCCCc
Q psy6049 6 TYFVMVTYLPNKLGIHV-----DFNT-------PRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSPGS 72 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~-----~~~~-------~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~g~ 72 (241)
||++||||||+++.+.. ..|. .+++|.+++++++|.|.+|+ +.||++||.. ..|||+||+.
T Consensus 279 AV~~~A~Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~-i~Fd~~Gd~~~~~~~I~~~~~----- 352 (377)
T cd06379 279 AVAVLASAIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGR-VEFNDDGDRKFANYDIMNIQN----- 352 (377)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCccCc-eEECCCCCccCccEEEEEecC-----
Confidence 79999999999975322 1232 24578999999999999885 9999999986 7999999973
Q ss_pred eeEEEEEEEECceEEEecC
Q psy6049 73 YEWVRVGEYVEGELRLNLS 91 (241)
Q Consensus 73 ~~~v~VG~~~~~~l~in~~ 91 (241)
..+++||.|++..+.++.+
T Consensus 353 ~~~~~VG~w~~~~l~~~~~ 371 (377)
T cd06379 353 RKLVQVGLYNGDILRLNDR 371 (377)
T ss_pred CCceEeeEEcCcEEEecCc
Confidence 2479999999877888777
No 11
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.94 E-value=2.3e-10 Score=99.50 Aligned_cols=58 Identities=26% Similarity=0.372 Sum_probs=51.6
Q ss_pred CCCceEEEeccCChhhhHHHHHHHHHHHHHHhhheeeccCCCCCCCcceeEEEEeeee
Q psy6049 166 TREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVG 223 (241)
Q Consensus 166 ~~~~iil~C~~~s~~~~~~~l~y~~lL~l~c~~~Af~~R~lP~nFNEAK~I~Fs~~~~ 223 (241)
+++++...|...+..+++..++|+++|.++|+++||++|++|+||||||+|+++|++.
T Consensus 135 ~~~~~~~~C~~~~~~~~~~~~~y~~~Ll~~~~~la~~~R~~~~~~nEa~~I~~~~~~~ 192 (238)
T PF00003_consen 135 SSNEIYLSCSSNSNIWLILSLGYNGLLLLIGFFLAFKTRNVPSNFNEARYIAFAIYNI 192 (238)
T ss_pred cceEEEEEecCCccchHHHHHHHHHHHHHHHHHHHHhhCCCCcccchhhhHhHhHHHH
Confidence 4455678896568899999999999999999999999999999999999999998653
No 12
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=98.89 E-value=5.2e-09 Score=98.13 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=71.8
Q ss_pred hHHHHHhhhhhhhCCCcCCC-----CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN-----TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGE 80 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~-----~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~ 80 (241)
|+|+||+|||+++.+....| ..+|.|.++|++++|.+.+| .+.||++||....|+|++++. ..+...+++||.
T Consensus 315 aV~~~a~Al~~a~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~g-~i~fd~~G~~~~~~~i~~~~~-~~~~~~~~~vG~ 392 (410)
T cd06363 315 AVYAVAHALHNVLQCGSGGCPKRVPVYPWQLLEELKKVNFTLLGQ-TVRFDENGDPNFGYDIVVWWW-DNSSGTFEEVGS 392 (410)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHhccEEecCCc-EEEeCCCCCCccceEEEEEEE-cCCceeEEEEEE
Confidence 78999999999988765544 35789999999999998876 799999999877899999986 446788999999
Q ss_pred EEC--ceEEEecC
Q psy6049 81 YVE--GELRLNLS 91 (241)
Q Consensus 81 ~~~--~~l~in~~ 91 (241)
|++ ..|.++++
T Consensus 393 ~~~~~~~l~~~~~ 405 (410)
T cd06363 393 YSFYPIRLTINRS 405 (410)
T ss_pred EECCCCEEEEehH
Confidence 996 67888877
No 13
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=98.80 E-value=6.2e-09 Score=95.46 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=62.0
Q ss_pred hHHHHHhhhhhhhCCC------cCCCCC----ce----ecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcCC
Q psy6049 6 TYFVMVTYLPNKLGIH------VDFNTP----RV----KFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSP 70 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~------~~~~~~----~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~ 70 (241)
||+++|||||+++.+. ...|.. +| .|.+||++++|.|.+| .+.||+|||.. ..|||+|++.
T Consensus 264 av~~~a~Al~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg-~v~F~~~G~~~~~~~~I~~l~~--- 339 (362)
T cd06367 264 AVAIVARAAESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETG-DVSFNEDGYLSNPKLVIINLRR--- 339 (362)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCC-ceeECCCcccccceEEEEEecC---
Confidence 7899999999997642 122322 13 4788999999999999 59999999975 7999999973
Q ss_pred CceeEEEEEEEECceEEEecC
Q psy6049 71 GSYEWVRVGEYVEGELRLNLS 91 (241)
Q Consensus 71 g~~~~v~VG~~~~~~l~in~~ 91 (241)
...+++||.|++ +.++.+
T Consensus 340 -~~~~~~VG~W~~--~~~~~~ 357 (362)
T cd06367 340 -NRKWERVGSWEN--GKLVMR 357 (362)
T ss_pred -CCcceEEEEEcC--CceecC
Confidence 356899999975 667766
No 14
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=98.28 E-value=1.1e-06 Score=81.60 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=60.0
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccc---cceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRAD---NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~---~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
|+|++|+|||+++..... -..+-++..+|+ +++|.|.+| .|.||++||..+.|+|+++|...++ ..++.||.|+
T Consensus 308 av~~~A~Al~~~~~~g~~-~~~g~~l~~~l~~~~~~~f~G~tG-~v~fd~~G~r~~~y~i~~~~~~~~~-~~~~~vg~~~ 384 (391)
T cd06372 308 AVLLYALAVKEMLKAGKD-FRNGRQLVSTLRGANQVELQGITG-LVLLDEQGKRQMDYSVYALQKSGNS-SLFLPFLHYD 384 (391)
T ss_pred HHHHHHHHHHHHHhcCCC-CCCHHHHHHHHhhccCceEeccce-eEEECCCCCcceeEEEEeccccCCc-cceeeEEEec
Confidence 589999999998875321 123456888888 699999999 5999999999999999999853332 4689999997
Q ss_pred C
Q psy6049 83 E 83 (241)
Q Consensus 83 ~ 83 (241)
.
T Consensus 385 ~ 385 (391)
T cd06372 385 S 385 (391)
T ss_pred c
Confidence 5
No 15
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=97.88 E-value=2.5e-05 Score=73.05 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=57.4
Q ss_pred hHHHHHhhhhhhhCC------CcCCC---CC-ce----ecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEcCC
Q psy6049 6 TYFVMVTYLPNKLGI------HVDFN---TP-RV----KFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSP 70 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~------~~~~~---~~-~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~ 70 (241)
||+++|+|++.++.- ....| .. +| .|..|+++++|+|. .+.||++|+. ...|||+|...
T Consensus 265 aV~vva~Al~~l~~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G~---~i~F~~~G~r~~~~ldIinl~~--- 338 (362)
T cd06378 265 GVAIIATGASAMLRQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNVTWEGR---DLSFTEDGYLVNPKLVVISLNK--- 338 (362)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcceECCC---ceeECCCCeEccceEEEEEecC---
Confidence 799999999987631 01112 11 35 58899999999884 7999999966 57999999852
Q ss_pred CceeEEEEEEEECceEEEe
Q psy6049 71 GSYEWVRVGEYVEGELRLN 89 (241)
Q Consensus 71 g~~~~v~VG~~~~~~l~in 89 (241)
...+.+||.|+.+.|.|.
T Consensus 339 -~~g~~kVG~W~~~~L~~~ 356 (362)
T cd06378 339 -ERVWEEVGKWENGSLRLK 356 (362)
T ss_pred -CCCceEEEEEcCCeEEEe
Confidence 134789999998777774
No 16
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.84 E-value=2.6e-05 Score=72.98 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred hHHHHHhhhhhhhCCCc--------CCC----CCce----ecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHV--------DFN----TPRV----KFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~--------~~~----~~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~ 68 (241)
||+++|+|++++..-.. ..| ..+| .|.+++++++|.|.+|. +.||++|+.. ..|+|+|..
T Consensus 271 aV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~-i~F~~~G~r~~~~~~I~~~~-- 347 (364)
T cd06390 271 GVRVMAEAFQNLRKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN-VQFNEKGRRTNYTLHVIEMK-- 347 (364)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccc-eeeCCCCCcccceEEEEEec--
Confidence 78999999998643111 023 2245 48899999999999998 9999999874 689999875
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
..| +++||.|++
T Consensus 348 ~~g---~~~vG~W~~ 359 (364)
T cd06390 348 HDG---IRKIGYWNE 359 (364)
T ss_pred CCc---ceEEEEECC
Confidence 223 689999985
No 17
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=97.84 E-value=2.6e-05 Score=74.36 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=56.3
Q ss_pred hHHHHHhhhhhhhC-----------CCcCCCCCce----ecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEc-
Q psy6049 6 TYFVMVTYLPNKLG-----------IHVDFNTPRV----KFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEM- 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~-----------~~~~~~~~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~- 68 (241)
||+++|+||++++. |..+ ...+| .|..++++++|+|.+|. +.||++|.. ...|||+|.+..
T Consensus 303 aV~~~A~Al~~ll~~~~~~~~~~l~C~~~-~~~~w~~G~~ll~~ik~v~f~GLTG~-I~F~~~G~r~~~~ldIi~l~~~~ 380 (400)
T cd06392 303 SVLMLANAFHRKLEDRKWHSMASLNCIRK-STKPWNGGRSMLETIKKGHITGLTGV-MEFKEDGANPHVQFEILGTSYSE 380 (400)
T ss_pred HHHHHHHHHHHHhhccccCCCCCCccCCC-CCCCCCChHHHHHHHHhCCCccCccc-eeECCCCCCcCCceEEEeccccc
Confidence 78999999998653 2111 12355 58999999999999996 999999965 579999998632
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.-|+ .+++||.|++
T Consensus 381 ~~g~-g~~~iG~W~~ 394 (400)
T cd06392 381 TFGK-DVRRLATWDS 394 (400)
T ss_pred cCCC-CceEeEEecC
Confidence 1132 3689999986
No 18
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=97.73 E-value=5.7e-05 Score=71.73 Aligned_cols=82 Identities=10% Similarity=0.193 Sum_probs=59.9
Q ss_pred hHHHHHhhhhhh------hCCCcC--CCC----C-ce----ecccccccceecCCCCCeEEeccCCC--CcceeeEEEeE
Q psy6049 6 TYFVMVTYLPNK------LGIHVD--FNT----P-RV----KFPPRADNDNIAGLSGDKFKFDANGD--GPARYNIIHFK 66 (241)
Q Consensus 6 ~~~~ma~aLh~~------l~~~~~--~~~----~-~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd--~~~~YdI~n~~ 66 (241)
||+++|+|++.+ .++... .|. . +| .|..||++++|+|.+|. |.|+..+. .....||++++
T Consensus 275 AV~lvA~a~~~l~~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~-I~F~~g~R~~~~~~l~I~~L~ 353 (382)
T cd06377 275 ALELVARAVGSATLVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGP-VWVTGSSQVHSSRHFKVWSLR 353 (382)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCccccccee-EEEccCeeecccceEEEEEec
Confidence 799999999964 222221 232 2 56 37899999999999996 99976555 34577999987
Q ss_pred EcCCCceeEEEEEEEEC-ceEEE
Q psy6049 67 EMSPGSYEWVRVGEYVE-GELRL 88 (241)
Q Consensus 67 ~~~~g~~~~v~VG~~~~-~~l~i 88 (241)
..+.|...|++||+|++ +.+.+
T Consensus 354 ~~~~G~~~W~kVG~W~~~~~~~~ 376 (382)
T cd06377 354 RDPVGQPTWTTVGSWQGGRKIVM 376 (382)
T ss_pred cccCCCccceEEEEecCCCceec
Confidence 65677778999999987 44433
No 19
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.61 E-value=4.4e-05 Score=71.52 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=51.4
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKE 67 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~ 67 (241)
|+++||+|||+.+..... ...+-++.++|++++|.|.+|..+.||++||..+.|.+++++.
T Consensus 323 Av~~~a~Al~~~~~~~~~-~~~g~~i~~~l~~~~f~GvtG~~v~fd~~G~~~~~y~v~~~~~ 383 (404)
T cd06370 323 AVMLYAKALDETLLEGGD-IYNGTAIVSHILNRTYRSITGFDMYIDENGDAEGNYSVLALQP 383 (404)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcccccccCceEEEcCCCCcccceEEEEecc
Confidence 689999999998765322 2346678899999999999997799999999989999999864
No 20
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=97.59 E-value=0.00011 Score=69.66 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=56.0
Q ss_pred hHHHHHhhhhhhhC------CCcCCCC----Cce----ecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEcCC
Q psy6049 6 TYFVMVTYLPNKLG------IHVDFNT----PRV----KFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSP 70 (241)
Q Consensus 6 ~~~~ma~aLh~~l~------~~~~~~~----~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~ 70 (241)
||.++|+|+++++. .....|. .+| .|..++++++|+|.+|+ +.||++|.. ...|||+|....+.
T Consensus 303 aV~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~-i~f~~~g~r~~~~~dIin~~~~~~ 381 (400)
T cd06391 303 TVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGE-LEFNENGGNPNVHFEILGTNYGED 381 (400)
T ss_pred HHHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccceec-eEECCCCCccCCceEEEEeecccc
Confidence 68899999998642 1111232 245 48899999999999996 999998966 57999999753232
Q ss_pred CceeEEEEEEEEC
Q psy6049 71 GSYEWVRVGEYVE 83 (241)
Q Consensus 71 g~~~~v~VG~~~~ 83 (241)
....+++||.|++
T Consensus 382 ~~~g~rkiG~Ws~ 394 (400)
T cd06391 382 LGRGVRKLGCWNP 394 (400)
T ss_pred CCCcceEEEEEcC
Confidence 1223689999986
No 21
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.54 E-value=0.00017 Score=67.37 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=55.2
Q ss_pred hHHHHHhhhhhhhCCCcC--------CC----CCce----ecccccccceecCCCCCeEEeccCCCCcc-eeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHVD--------FN----TPRV----KFPPRADNDNIAGLSGDKFKFDANGDGPA-RYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~--------~~----~~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~-~YdI~n~~~~ 68 (241)
||+++|.|+.++..-... .| ..+| .+.++|++++|.|.+|. +.||++|+... .++|++.+
T Consensus 276 AV~v~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~-i~Fd~~G~r~~~~~~ii~l~-- 352 (370)
T cd06389 276 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGN-IKFDQNGKRINYTINVMELK-- 352 (370)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccc-eEeCCCCccccceEEEEEec--
Confidence 789999999986321110 23 2355 48899999999999995 99999999865 89999985
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 353 ~~g---~~kvG~W~~ 364 (370)
T cd06389 353 SNG---PRKIGYWSE 364 (370)
T ss_pred CCc---ceEEEEEcC
Confidence 333 689999986
No 22
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=97.45 E-value=0.0002 Score=66.63 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=59.1
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|++++++||++....... ..+++++.+.|++++|.|.+|. +.||++||....|.|+++....+| +++.||.|+.
T Consensus 315 av~~~a~Al~~~~~~~~~-~~~~~~i~~~l~~~~f~G~tG~-v~fd~~G~~~~~~~v~~~~~~~~g--~~~~~~~~~~ 388 (396)
T cd06373 315 AVLLYALALNETLAEGGD-PRDGTNITRRMWNRTFEGITGN-VSIDENGDRESDFSLWDMTDTETG--TFEVVANYNG 388 (396)
T ss_pred HHHHHHHHHHHHHhccCC-CCChHHHHHHhcCCceecccCc-eEeecCCcccceeeeeeccCCCCc--eEEEEeeccc
Confidence 678999999998543211 2457889999999999999986 999999999889999877554555 5678898875
No 23
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.38 E-value=0.00033 Score=65.62 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=54.1
Q ss_pred hHHHHHhhhhhhh----CCCcC----CC----CCcee----cccccccceecCCCCCeEEeccCCCCcc-eeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKL----GIHVD----FN----TPRVK----FPPRADNDNIAGLSGDKFKFDANGDGPA-RYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l----~~~~~----~~----~~~~~----l~~yL~~v~F~~~~g~~v~Fd~nGd~~~-~YdI~n~~~~ 68 (241)
||+++|.|+.++. ..... .| ..+|+ +.++|++++|.|.+|. +.||++|+... .++|++.+
T Consensus 277 aV~l~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~-i~Fd~~G~r~~~~l~Ii~l~-- 353 (371)
T cd06388 277 GVLVMAEAFRNLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGN-IQFDHYGRRVNYTMDVFELK-- 353 (371)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccc-eeECCCCCcccceEEEEEcc--
Confidence 7899999998753 11000 22 23564 8899999999999995 99999999865 88999874
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 354 ~~g---~~kvG~W~~ 365 (371)
T cd06388 354 SNG---PRKIGYWND 365 (371)
T ss_pred CCC---ceEEEEEcC
Confidence 333 689999986
No 24
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=97.28 E-value=0.00048 Score=64.32 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|++++|.||++.+.... .-.++-.+.+.|++++|.|.+|. +.||++||..+.|.+++++...+| .++.||.|+.
T Consensus 317 av~l~a~Al~~~~~~~~-~~~~g~~i~~~l~~~~f~G~tG~-v~fd~~G~r~~~~~~~~~~~~~~g--~~~~v~~~~~ 390 (405)
T cd06385 317 GVMLYAHALNETMAKGG-TRPPGTAITQRMWNRTFYGVTGF-VKIDDNGDRETDFALWDMTDTESG--DFQVVSVYNG 390 (405)
T ss_pred HHHHHHHHHHHHHhcCC-CCCCHHHHHHHhhCceEeeceeE-EEEcCCCCEeceeEEEEccCCCCC--cEEEEEEEcc
Confidence 67899999998744211 11245678889999999999995 999999999889999887655555 5789999985
No 25
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=97.25 E-value=0.00065 Score=63.45 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=59.3
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|++++|+||.+.+.-.-. .+.+-.|...+++++|.|.+|. +.||++||....|+++.++. .+...++.||.|..
T Consensus 305 av~l~A~Al~~~~~~g~~-~~~g~~l~~~l~~~~f~G~tG~-v~~d~~g~r~~~~~v~~~~~--~~~~~~~~~~~~~~ 378 (387)
T cd06386 305 AILLYALALHEVLKNGYS-KKDGTKITQRMWNRTFEGIAGQ-VSIDANGDRYGDFSVIAMTD--VEAGTYEVVGNYFG 378 (387)
T ss_pred HHHHHHHHHHHHhhCCCC-CCCHHHHHHHHhCCceeecccc-EEECCCCCccccEEEEEccC--CCCccEEEEeEEcc
Confidence 789999999988643211 2445578899999999999995 99999999999999998863 34567899999964
No 26
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.25 E-value=0.00049 Score=64.84 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=54.5
Q ss_pred hHHHHHhhhhhhhCCCc----C----CC----CCcee----cccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHV----D----FN----TPRVK----FPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~----~----~~----~~~~~----l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~ 68 (241)
||+++|+|++++..-.. . .| ..+|+ |..+|++++|.|.+|. +.||++|.. ...|||+|..
T Consensus 279 aV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~-i~F~~~G~R~~~~ldIinl~-- 355 (372)
T cd06387 279 AILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGN-IQFDTYGRRTNYTIDVYEMK-- 355 (372)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccc-eeeCCCCCcccceEEEEEec--
Confidence 78999999998632111 1 23 23564 7899999999999996 999998976 5799999874
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 356 ~~g---~~kIG~W~~ 367 (372)
T cd06387 356 PSG---SRKAGYWNE 367 (372)
T ss_pred CCC---ceeEEEECC
Confidence 333 578999985
No 27
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=97.17 E-value=0.00078 Score=62.23 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=53.8
Q ss_pred hHHHHHhhhhhhhCCCc--------------CCC----C----CceecccccccceecCCCCCeEEeccCCCCc-ceeeE
Q psy6049 6 TYFVMVTYLPNKLGIHV--------------DFN----T----PRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNI 62 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~--------------~~~----~----~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI 62 (241)
|++++|+|+++...-.. ..| . ++.++.++|++++|.|.+|. +.||++||.. ..++|
T Consensus 283 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~-i~Fd~~G~~~~~~~~i 361 (382)
T cd06380 283 AVLVMAEAFRSLRRQRGSGRHRIDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGN-VQFDEFGQRTNYTLDV 361 (382)
T ss_pred HHHHHHHHHHHHHHhccccccccccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccc-eEECCCCCcccccEEE
Confidence 68899999998753110 012 1 23358899999999999986 9999999986 57999
Q ss_pred EEeEEcCCCceeEEEEEEEEC
Q psy6049 63 IHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 63 ~n~~~~~~g~~~~v~VG~~~~ 83 (241)
++++ . + .+++||.|++
T Consensus 362 ~~~~--~-~--~~~~vg~w~~ 377 (382)
T cd06380 362 VELK--T-R--GLRKVGYWNE 377 (382)
T ss_pred EEec--C-C--CceEEEEECC
Confidence 9986 2 2 2678999975
No 28
>KOG4440|consensus
Probab=96.93 E-value=0.00078 Score=67.26 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=52.0
Q ss_pred ehHHHHHhhhhhhhCCCcCCCC-----------Ccee-ccccccccee-cCCCCCeEEeccCCCCc-ceeeEEEeEEcCC
Q psy6049 5 ITYFVMVTYLPNKLGIHVDFNT-----------PRVK-FPPRADNDNI-AGLSGDKFKFDANGDGP-ARYNIIHFKEMSP 70 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~~~~~~~~-----------~~~~-l~~yL~~v~F-~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~ 70 (241)
-+++|.|.|.|.++--..-..+ ..|. |..+|.--.. .|.+| .|.||++||-. +.|||+|+.+.
T Consensus 289 Dsv~vlasAv~e~~~~e~I~~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~Tg-rV~Fnd~gdRi~a~YdiiN~hq~-- 365 (993)
T KOG4440|consen 289 DSVGVLASAVHELLEKENITDPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTG-RVEFNDDGDRIFANYDIINLHQN-- 365 (993)
T ss_pred hhHHHHHHHHHHHHhhccCCCCCCcccCccchhcccHHHHHHHhhhcccCCcce-eEEEcCCCceeeccceeEehhhh--
Confidence 4799999999999844322221 1232 4555554333 34455 59999999985 89999999531
Q ss_pred CceeEEEEEEEECceEEEecC
Q psy6049 71 GSYEWVRVGEYVEGELRLNLS 91 (241)
Q Consensus 71 g~~~~v~VG~~~~~~l~in~~ 91 (241)
.+.|.+|.++...+..|.+
T Consensus 366 --rk~Vg~~~yd~~r~~~nd~ 384 (993)
T KOG4440|consen 366 --RKLVGVGIYDGTRVIPNDR 384 (993)
T ss_pred --hhhhhhccccceeeccCCc
Confidence 2345566666544555555
No 29
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=96.92 E-value=0.00033 Score=62.34 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=46.5
Q ss_pred hHHHHHhhhhhhhCCCcCCC--C----CceecccccccceecCCCCCeEEecc-CCCC-cceeeEEEeE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN--T----PRVKFPPRADNDNIAGLSGDKFKFDA-NGDG-PARYNIIHFK 66 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~--~----~~~~l~~yL~~v~F~~~~g~~v~Fd~-nGd~-~~~YdI~n~~ 66 (241)
|++++|+|||+++-...... . .+.++.+++++++|.|.+|+ +.||+ +|+. ...|+|+|||
T Consensus 281 Av~~~a~al~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-v~f~~~~G~~~~~~~~i~~~~ 348 (348)
T PF01094_consen 281 AVYLLAHALNRALQDGGPVTNGRNPWQNGSQLLKYLRNVSFEGLTGR-VSFDSNDGDRTNYDYDILNMQ 348 (348)
T ss_dssp HHHHHHHHHHHHHHHHSTTTSSSGTSTTHHHHHHHHHTEEEEETTEE-EEEETTTSBEESEEEEEEEE-
T ss_pred hhHHHHHHHHHHHHhccCCCCCccccccHHHHHHHHhheeeeCCCCC-EEEeCCCCCcCCCEEEEEECC
Confidence 78999999999974322211 1 24568999999999999995 99999 8888 5788999985
No 30
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=96.82 E-value=0.0019 Score=59.45 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=55.7
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
|++++++|+|++...... -.+++++...|++++|.|.+| .+.||++||..+.|+|++|+.. ...+..++.++
T Consensus 309 av~~~a~Al~~~~~~~~~-~~~~~~v~~~l~~~~f~g~~G-~v~fd~~G~~~~~~~v~~~~~~---~~~~~~~~~~~ 380 (389)
T cd06352 309 AVLLYAHALNETLAEGGD-YNGGLIITRRMWNRTFSGITG-PVTIDENGDREGDYSLLDLDST---GGQLEVVYLYD 380 (389)
T ss_pred HHHHHHHHHHHHHHhCCC-CCchHHHHHHhcCcEEEeeee-eEEEcCCCCeeeeEEEEEecCC---CceEEEEEecc
Confidence 679999999998765322 234677888999999999888 5999999999999999999632 23455666654
No 31
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=96.78 E-value=0.0017 Score=60.39 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred hHHHHHhhhhhhhCCC--cCCC--CCce----ecccccccceecCCCCCeEEecc-CCC-CcceeeEEEeEEcCCCceeE
Q psy6049 6 TYFVMVTYLPNKLGIH--VDFN--TPRV----KFPPRADNDNIAGLSGDKFKFDA-NGD-GPARYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~--~~~~--~~~~----~l~~yL~~v~F~~~~g~~v~Fd~-nGd-~~~~YdI~n~~~~~~g~~~~ 75 (241)
||++||+|+++..... .-.| +.+| ++.++|+++.|.|.+|. +.||+ +|. ....|||+|.. .+ .+
T Consensus 296 av~~~a~A~~~~~~~~~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~-i~Fd~~~g~r~~~~~~i~~~~--~~---g~ 369 (384)
T cd06393 296 AVHMVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGR-IVFNKTSGLRTDFDLDIISLK--ED---GL 369 (384)
T ss_pred hHHHHHHHHhhhhhcCCCCCCCCCCCCCcccHHHHHHHhheeecccccc-eEecCCCCeeeeeEEEEEEec--CC---cc
Confidence 7899999999643221 1123 2456 48899999999999996 99996 555 46789999985 22 36
Q ss_pred EEEEEEEC
Q psy6049 76 VRVGEYVE 83 (241)
Q Consensus 76 v~VG~~~~ 83 (241)
++||.|++
T Consensus 370 ~~vg~W~~ 377 (384)
T cd06393 370 EKVGVWNP 377 (384)
T ss_pred eeeEEEcC
Confidence 88999986
No 32
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=96.56 E-value=0.006 Score=57.02 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=57.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|++++|.||.+.+... ..-.++-++.+.|++++|.|.+|. +.||++||....|.++.++...+| .++.||.|+.
T Consensus 318 av~l~a~Al~~~~~~~-~~~~~g~~i~~~l~~~~f~GvtG~-v~fd~~G~r~~~~~~~~~~~~~~g--~~~~v~~~~~ 391 (399)
T cd06384 318 GVMLYAMALNETLAEG-GSQKDGLNITRKMQDRRFWGVTGL-VSIDKNNDRDIDFDLWAMTDHETG--KYEVVAHYNG 391 (399)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCcHhHHHHHhCceeecceeE-EEECCCCCcccceEEEEeecCCCC--eEEEEEEEcC
Confidence 6889999999875331 111345678999999999999996 999999999888988766554556 4789999975
No 33
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=96.28 E-value=0.0078 Score=57.22 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=56.8
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
||-.-||||+..+.-..+. ...++.+-++|.+|.|.+|. |.+|+|||..+.|.++.. ...+..+..||.|+.
T Consensus 293 aVLLYa~AL~EtL~~G~~~--~~~~I~~~m~NrTF~GitG~-V~IDeNGDRd~dfsLl~m---s~~tg~y~vV~~y~t 364 (380)
T cd06369 293 GVLLFGHVLKKFLESQEGV--QTFSFINEFRNISFEGAGGP-YTLDEYGDRDVNFTLLYT---STDTSKYKVLFEFDT 364 (380)
T ss_pred HHHHHHHHHHHHHHhCCCC--CcHHHHHHHhCcceecCCCc-eEeCCCCCccCceEEEEe---eCCCCCeEEEEEEEC
Confidence 4456689999988765442 22567777899999999998 999999999999999876 234456788999985
No 34
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=94.18 E-value=0.067 Score=49.95 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=47.7
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFK 66 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~ 66 (241)
|++++|+|+.+.+.-.. ..++-++.+.|.+.+|.|.+|. +.||++||....|.|+++.
T Consensus 302 av~~~a~Al~~a~~~g~--~~d~~~l~~~l~~~~f~GvtG~-v~fd~~g~~~~~~~v~~~~ 359 (382)
T cd06371 302 SIYLLAHAVENARAAGG--GVSGANLAQHTRNLEFQGFNQR-LRTDSGGGGQAPYVVLDTD 359 (382)
T ss_pred HHHHHHHHHHHHHHhCC--CccHHHHHHHHhCccccccceE-EEecCCCCcccceEEEecC
Confidence 67889999998863211 2456788999999999999996 9999999999999998874
No 35
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=92.30 E-value=0.17 Score=47.35 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=38.7
Q ss_pred cccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 31 FPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 31 l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
+..||+++.|.|.+|. +.||++|.- .-.+||+.........-..+++|.|++
T Consensus 306 ~~~~~~~~~~~GLTG~-i~F~~~g~r~~~~l~i~~~~~~~~~~~~~~~~~~w~~ 358 (363)
T cd06381 306 LLETIKKGPITGLTGK-LEFNEGGDNSNVQFEILGTGYSETLGKDGRWLATWNP 358 (363)
T ss_pred HHHHHHhcCccCccee-EEeCCCCCccccEEEEEEeccCCccccceEEeeeccC
Confidence 4789999999999996 999998887 467899877532211223567888875
No 36
>KOG1055|consensus
Probab=91.49 E-value=0.12 Score=53.07 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=42.8
Q ss_pred Eecc-CChhhhHHHHHHHHHHHHHHhhheeeccCCC-CCCCcceeEEEEe
Q psy6049 173 VCAS-FISASYMIAFGYPIVLIVVCTVYAVLTRNIP-EAFNESKHIGEFS 220 (241)
Q Consensus 173 ~C~~-~s~~~~~~~l~y~~lL~l~c~~~Af~~R~lP-~nFNEAK~I~Fs~ 220 (241)
.|+. ...+++.++.||-++|++++.++|+.||++- ..-|..|||++++
T Consensus 631 ~Ces~~~~iwlgivya~KglllvfG~FLA~ETR~V~i~~INDskyiG~sv 680 (865)
T KOG1055|consen 631 HCESEHMTIWLGIVYAYKGLLLLFGCFLAWETRNVSIPAINDSKYIGMSV 680 (865)
T ss_pred hhcccccchhhhhhhhhhhHHHHHhHHhhhhccccchhhhccccccceee
Confidence 3864 5778899999999999999999999999998 7889999999774
No 37
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=89.77 E-value=0.68 Score=41.63 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=32.0
Q ss_pred eEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 47 KFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 47 ~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
.+.||++||..+.|+|.+|+..+ |+..+++||.|++
T Consensus 304 ~v~f~~~gd~~~~~~i~~~~~~~-~~~~~~~vg~~~~ 339 (348)
T cd06350 304 EVKFDENGDRLASYDIINWQIFP-GGGGFVKVGFWDP 339 (348)
T ss_pred EEEecCCCCcccceeEEEEEEcC-CcEEEEEEEEEcC
Confidence 59999999999999999998655 7788999999975
No 38
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=89.39 E-value=0.4 Score=44.99 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=44.0
Q ss_pred hHHHHHhhhhhh------hCCCcC---CCC-----Cce-----ecccccccceecCCCCCeEEeccCCCCcceeeEEEeE
Q psy6049 6 TYFVMVTYLPNK------LGIHVD---FNT-----PRV-----KFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFK 66 (241)
Q Consensus 6 ~~~~ma~aLh~~------l~~~~~---~~~-----~~~-----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~ 66 (241)
||+++|.|++++ ++|... -|. -+| .+..|++.+.|.|.+|. +.||++|. -..|++.-|.
T Consensus 282 av~~~~~a~~~l~~~~~~~~~~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~-i~f~~~g~-R~~~~l~~~~ 359 (368)
T cd06383 282 AVLAVGEWPRRMRKKRVEDGSTGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGR-VAIDEGSS-VSTKTIGSWS 359 (368)
T ss_pred HHHHhccccchhheeeccCCCcCccccCCCCCCcccchhhcccccccCccceeEeeecCe-EEEecCce-eeeeeeeeEe
Confidence 688999999964 233211 111 157 88999999999999996 99999875 4678888775
Q ss_pred E
Q psy6049 67 E 67 (241)
Q Consensus 67 ~ 67 (241)
-
T Consensus 360 ~ 360 (368)
T cd06383 360 A 360 (368)
T ss_pred c
Confidence 3
No 39
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=78.94 E-value=2.8 Score=37.87 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=31.9
Q ss_pred cceecCCCCCeEEeccCCCC-cceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 37 NDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 37 ~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
+++|.|.+|. +.||++|+. ...|+++++. + ..+++||.|++
T Consensus 301 ~~~~~G~~G~-v~fd~~~~~~~~~~~~~~~~---~--~~~~~vg~~~~ 342 (350)
T cd06366 301 STNFNGLSGP-VQFDGGRRLASPAFEIINII---G--KGYRKIGFWSS 342 (350)
T ss_pred eceEEeeeee-EEEcCCCccCCcceEEEEec---C--CceEEEEEEeC
Confidence 6789999985 999999987 4677777662 2 35788999985
No 40
>KOG1055|consensus
Probab=72.02 E-value=1.3 Score=45.81 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=51.6
Q ss_pred hHHHHHhhhhhhhCCCcC-------CCC--C--ceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCcee
Q psy6049 6 TYFVMVTYLPNKLGIHVD-------FNT--P--RVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYE 74 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~-------~~~--~--~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~ 74 (241)
+|.++|+|+.....-... +.- + .-++...+++++|.|.+|. |.|.. ||-.+.-+|.+|| +| +
T Consensus 348 ~Iwa~ala~n~t~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~-V~F~~-geR~a~t~ieQ~q---dg--~ 420 (865)
T KOG1055|consen 348 AIWALALALNKTMEGLGRSHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGH-VVFSN-GERMALTLIEQFQ---DG--K 420 (865)
T ss_pred HHHHHHHHHHHHHhcCCccceeccccchhhhHHHHHHHHHhhcccccccccc-eEecc-hhhHHHHHHHHHh---CC--c
Confidence 567788999887654321 111 1 1246777899999999996 88988 8888888888775 45 5
Q ss_pred EEEEEEEEC
Q psy6049 75 WVRVGEYVE 83 (241)
Q Consensus 75 ~v~VG~~~~ 83 (241)
++++|.|+.
T Consensus 421 y~k~g~Yds 429 (865)
T KOG1055|consen 421 YKKIGYYDS 429 (865)
T ss_pred eEeeccccc
Confidence 689999986
No 41
>KOG1054|consensus
Probab=71.90 E-value=5.8 Score=40.37 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=50.8
Q ss_pred hHHHHHhhhhhhhCCCcCC--------CC----Cce----ecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcC
Q psy6049 6 TYFVMVTYLPNKLGIHVDF--------NT----PRV----KFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMS 69 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~--------~~----~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~ 69 (241)
|+-||++|+..+....++. |. .+| .+...|++|.+.|.+|. +.||..|.- .+|++--....+
T Consensus 306 ailV~~eaf~~~~~q~~~~~rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGn-iqFd~~G~R-~Nyt~~i~elk~ 383 (897)
T KOG1054|consen 306 AILVMAEAFRSLRRQRIDISRRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGN-IQFDKYGRR-TNYTIDIVELKS 383 (897)
T ss_pred HHHHHHHHHHHHHHhhhchhccCCCccccCCCCCchhcchhHHHHHHheeecccccc-eeecccCcc-ccceEEEEEecc
Confidence 6789999998876554432 11 244 35667999999998886 999999885 567654443334
Q ss_pred CCceeEEEEEEEEC
Q psy6049 70 PGSYEWVRVGEYVE 83 (241)
Q Consensus 70 ~g~~~~v~VG~~~~ 83 (241)
++ ..++|.|.+
T Consensus 384 ~~---~rk~~~W~e 394 (897)
T KOG1054|consen 384 NG---SRKVGYWNE 394 (897)
T ss_pred CC---cceeeeecc
Confidence 44 457899975
No 42
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=65.91 E-value=6.4 Score=35.21 Aligned_cols=36 Identities=25% Similarity=0.550 Sum_probs=27.7
Q ss_pred CCCCCeEEeccCCCCc-ceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 42 GLSGDKFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 42 ~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|.+|. +.||++||.. ..|+|+|.. + ..+++||.|++
T Consensus 286 g~tG~-v~f~~~g~r~~~~~~~~~~~---~--~~~~~vg~w~~ 322 (327)
T cd06382 286 GLTGR-IEFDSSGQRSNFTLDVIELT---E--SGLRKVGTWNS 322 (327)
T ss_pred ecccc-eeeCCCCCEeeeEEEEEecc---c--cCceEEEEECC
Confidence 78887 9999999874 578888764 2 23578999975
No 43
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=64.36 E-value=5.1 Score=35.57 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=32.1
Q ss_pred CceecccccccceecCCCCCeEEeccCCCC-cceeeEEEe
Q psy6049 27 PRVKFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHF 65 (241)
Q Consensus 27 ~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~ 65 (241)
.+-.+.+.|+++.|.|..|. +.|+++|+. ...|+|.+|
T Consensus 296 ~~~~v~~~l~~~~~~g~~g~-i~f~~~g~~~~~~~~~~~~ 334 (334)
T cd06342 296 DPAKVADALRKVDFDGVTGK-ISFDAKGDLKGAAVTVYQV 334 (334)
T ss_pred CHHHHHHHHHhCCCCCccee-eEECCCCCcccCcEEEEeC
Confidence 34568899999999999984 999999988 578999776
No 44
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=58.27 E-value=7.5 Score=34.97 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=36.0
Q ss_pred hHHHHHhhhhhhhCCCcCCC-C---CceecccccccceecCCCCCeEEeccCCCCc
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN-T---PRVKFPPRADNDNIAGLSGDKFKFDANGDGP 57 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~-~---~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~ 57 (241)
++.+++.|+++......... + .+-.+..+|++++|.+.+| .+.||++|+..
T Consensus 283 a~~~~~~A~~~a~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~G-~v~f~~~g~~~ 337 (344)
T cd06348 283 AVQVVAEALKRLNQKQKLAELPLPELRTALNAALLSGQYDTPLG-EISFTPDGEVL 337 (344)
T ss_pred HHHHHHHHHHHhcCCCccccchhhhHHHHHHHHHhccCCcccee-eeEECCCCCcc
Confidence 56778889987764321110 0 0335778999999999999 69999999863
No 45
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=55.51 E-value=15 Score=34.07 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=32.4
Q ss_pred CceecccccccceecCCCCCeEEeccCCCC-cceeeEEEeE
Q psy6049 27 PRVKFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFK 66 (241)
Q Consensus 27 ~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~ 66 (241)
++-.|...|++..|.+..|+ +.|+.+||. ...|.|++|+
T Consensus 321 ~~~~l~~al~~~~~~~~~G~-~~~~~~g~~~~~~~~i~~~~ 360 (369)
T PRK15404 321 DPAKVAKYLKANTFDTVIGP-LSWDEKGDLKGFEFGVFEWH 360 (369)
T ss_pred CHHHHHHHHHhCCCCcceEe-eEECCCCCcccCCEEEEEEE
Confidence 45568888999999999885 999999988 4788898885
No 46
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=54.09 E-value=10 Score=30.97 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=21.1
Q ss_pred ccccCcCCCCceeeeeCCCCeeEEccccCCCC
Q psy6049 121 SVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH 152 (241)
Q Consensus 121 SvCS~~C~pG~rK~~~~g~~CCw~Cv~C~~ge 152 (241)
..|-..|+||++....=...===.|.||++|+
T Consensus 41 ~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GT 72 (127)
T PHA02637 41 NLCCLSCPPGTYASRLCDIKTNTQCTPCGSGT 72 (127)
T ss_pred CeEcCCCCCCCEEeCcCCCCCCcccccCCCCC
Confidence 56889999999876431110002589999987
No 47
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=54.04 E-value=8 Score=25.59 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=19.9
Q ss_pred ccccCcCCCCceeeeeCCCCeeEEccccCCCC
Q psy6049 121 SVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH 152 (241)
Q Consensus 121 SvCS~~C~pG~rK~~~~g~~CCw~Cv~C~~ge 152 (241)
..| .+|+.|+.+.. .+.. .|++||.+.
T Consensus 9 ~~C-~~Cp~GtYq~~-~g~~---~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKC-QPCPKGTYQDE-EGQT---SCTPCPPGS 35 (48)
T ss_pred Ccc-CCCCCCccCCc-cCCc---cCccCcCCC
Confidence 456 78999998754 3444 699999885
No 48
>KOG1053|consensus
Probab=52.65 E-value=21 Score=38.07 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred ehHHHHHhhhhhhhCCCcCC------C--------CCceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcC
Q psy6049 5 ITYFVMVTYLPNKLGIHVDF------N--------TPRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMS 69 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~~~~~~------~--------~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~ 69 (241)
-++=++|+|-+.++-.+..- | +...-|+.||.|+.|.| ..+.|++.|-.. .+--+ ...
T Consensus 301 dgvaiva~aa~s~~~~~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g---~~lsf~~~g~~v~p~lvv----I~l 373 (1258)
T KOG1053|consen 301 DGVAIVARAASSMLRIHGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG---RDLSFNEDGYLVHPNLVV----IDL 373 (1258)
T ss_pred hhHHHHHHHHHHHHhhcccCCCcccccccccCccccchhhhhhhhheeeecc---cceeecCCceeeccceEE----Eec
Confidence 34567888888887654431 1 12345889999999986 458998877542 22222 235
Q ss_pred CCceeEEEEEEEECceEEEe
Q psy6049 70 PGSYEWVRVGEYVEGELRLN 89 (241)
Q Consensus 70 ~g~~~~v~VG~~~~~~l~in 89 (241)
++...|.+||.|..+.|.|.
T Consensus 374 ~~~r~We~VG~We~~~L~M~ 393 (1258)
T KOG1053|consen 374 NRDRTWERVGSWENGTLVMK 393 (1258)
T ss_pred CCCcchheeceecCCeEEEe
Confidence 66678999999987666654
No 49
>COG5472 Predicted small integral membrane protein [Function unknown]
Probab=41.37 E-value=15 Score=30.44 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=19.6
Q ss_pred HHHHHHHhhheeeccCCC-CCCCcceeE
Q psy6049 190 IVLIVVCTVYAVLTRNIP-EAFNESKHI 216 (241)
Q Consensus 190 ~lL~l~c~~~Af~~R~lP-~nFNEAK~I 216 (241)
+.+.+++-+--|++|+|| ..||.||-+
T Consensus 77 ~~~~~~ggi~M~~AR~LpA~~F~rAK~~ 104 (164)
T COG5472 77 AVFCWVGGIGMLIARKLPAKVFNRAKGI 104 (164)
T ss_pred HHHHHhcchHHHHhccCCHHHHhhccch
Confidence 334444445567999999 899999965
No 50
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=36.33 E-value=20 Score=22.87 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=12.5
Q ss_pred ccccCcCCCCceeeee
Q psy6049 121 SVCSLPCDRGQAKQYL 136 (241)
Q Consensus 121 SvCS~~C~pG~rK~~~ 136 (241)
|.||.+|..|.+....
T Consensus 7 s~CS~tCg~G~~~R~r 22 (49)
T PF00090_consen 7 SPCSATCGGGVQTRTR 22 (49)
T ss_dssp -SSSSSSSSEEEEEEE
T ss_pred CCCccccccCCceeEE
Confidence 7899999999876654
No 51
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.25 E-value=30 Score=24.71 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhhheeeccCCCCCCCccee
Q psy6049 182 YMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKH 215 (241)
Q Consensus 182 ~~~~l~y~~lL~l~c~~~Af~~R~lP~nFNEAK~ 215 (241)
....+.|+.++.+...++||..++ -.+|+||+.
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~-K~~~d~aa~ 43 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGK-KGEFDEAAR 43 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHhc
Confidence 334566777888888899998887 678888876
No 52
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=27.54 E-value=87 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=25.3
Q ss_pred CCCCCeEEeccCCCCc-ceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 42 GLSGDKFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 42 ~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|.+|. +.||++|.-. -.-||+... .+| .++||+|++
T Consensus 291 glTg~-i~f~~~g~R~~~~l~v~~l~--~~g---~~kig~W~~ 327 (333)
T cd06394 291 GLTGR-IEFNSKGQRSNYTLKILQKT--RSG---FRQIGQWHS 327 (333)
T ss_pred eeecc-eecCCCCcCcccEEEEEEec--CCc---ceEEEEEeC
Confidence 77885 9999988863 244666553 333 589999986
No 53
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=26.20 E-value=47 Score=29.66 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=29.6
Q ss_pred CceecccccccceecCCCCCeEEeccCCCCcceeeEEEe
Q psy6049 27 PRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHF 65 (241)
Q Consensus 27 ~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~ 65 (241)
.+-.+...|+++.|.+..| .+.|+++||....+-|+.|
T Consensus 308 ~~~~v~~al~~~~~~~~~G-~~~f~~~~~~~~~~~~~~~ 345 (345)
T cd06338 308 DPAAVRDALASNDFDTFYG-PIKFDETGQNNHPMTVVQW 345 (345)
T ss_pred CHHHHHHHHHhCCCccccc-CeeECCCCCcCCCceeeeC
Confidence 3456888899999999888 5999999998665555544
No 54
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=25.81 E-value=91 Score=27.51 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=23.8
Q ss_pred eEEeccCCCCc-ceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 47 KFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 47 ~v~Fd~nGd~~-~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
.+.||++|+.. ..++|+++. . ..+..||.|.+
T Consensus 287 ~~~f~~~g~~~~~~~~i~~~~--~---~~~~~~g~W~~ 319 (324)
T cd06368 287 RIQFDENGQRSNFTLDILELK--E---GGLRKVGTWNP 319 (324)
T ss_pred eeEeCCCCcCcceEEEEEEEc--C---CCceEEEEECC
Confidence 48999999874 688888875 2 23568899974
No 55
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=25.30 E-value=48 Score=21.40 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=11.8
Q ss_pred ccccCcCCCCceeee
Q psy6049 121 SVCSLPCDRGQAKQY 135 (241)
Q Consensus 121 SvCS~~C~pG~rK~~ 135 (241)
|.||..|..|.+...
T Consensus 8 s~Cs~tCg~G~~~R~ 22 (53)
T smart00209 8 SPCSVTCGGGVQTRT 22 (53)
T ss_pred ccccCCCCCCeEEEE
Confidence 689999999965543
No 56
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.23 E-value=35 Score=30.71 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcce
Q psy6049 8 FVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPAR 59 (241)
Q Consensus 8 ~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~ 59 (241)
|..++.|-+.+.-. ....+-.+.+.|+++.|.+..| .+.||++||+.+.
T Consensus 291 yda~~~l~~A~~~a--g~~~~~~i~~al~~~~~~g~~G-~i~f~~~g~~~~~ 339 (344)
T cd06345 291 YDSIYILAEAIERA--GSTDGDALVEALEKTDFVGTAG-RIQFYGDDSAFAH 339 (344)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHhCCCcCCce-eEEECCCCCcCcC
Confidence 45555555544432 1223456788899999999988 5999999998653
No 57
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=23.12 E-value=86 Score=27.54 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcc
Q psy6049 7 YFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPA 58 (241)
Q Consensus 7 ~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~ 58 (241)
+.+++.|+... | ...+++-.+.+.|++.+|.+..|. +.||.+|+...
T Consensus 280 ~~~~~~a~~~a-g---~~~~~~~~v~~al~~~~~~~~~g~-i~f~~~~~~~~ 326 (333)
T cd06332 280 AQLLDAALRAV-G---GDLSDKDALRAALRAADFDSPRGP-FKFNPNHNPIQ 326 (333)
T ss_pred HHHHHHHHHHh-c---CCCCCHHHHHHHHhcCceecCccc-eeECCCCCccc
Confidence 34455666543 1 111234457888999999998885 99999998754
No 58
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=22.74 E-value=64 Score=20.15 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=12.6
Q ss_pred CCCCceeeeeCCCCeeEEccccCCCC
Q psy6049 127 CDRGQAKQYLEGESCCWHCFNCTQYH 152 (241)
Q Consensus 127 C~pG~rK~~~~g~~CCw~Cv~C~~ge 152 (241)
|++|+.... ++..=|..|..|++|+
T Consensus 1 C~~g~y~~~-~~~~~C~~C~~C~~g~ 25 (39)
T PF00020_consen 1 CPPGTYSDS-ENHPQCLPCSRCPPGQ 25 (39)
T ss_dssp ECTTEEEES-SCSSSEEEEESBTTTE
T ss_pred CccCcccCC-CCCCcCCccCCcCcCC
Confidence 566654442 2213355556666665
No 59
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.60 E-value=1.9e+02 Score=26.62 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=37.3
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceeccccccccee-cCCCCCeEEeccCCCC-cceeeEEEeEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNI-AGLSGDKFKFDANGDG-PARYNIIHFKE 67 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F-~~~~g~~v~Fd~nGd~-~~~YdI~n~~~ 67 (241)
++.+++.|+-+.-. ..++-++...|+...+ .+..|. +.||++||. ...|.|..|+.
T Consensus 297 a~~~~~~ai~~a~~-----~~d~~~v~~al~~~~~~~~~~G~-v~~~~~~~~~~~~~~i~~~~~ 354 (366)
T COG0683 297 AVKLLAKAIEKAGK-----SSDREAVAEALKGGKFFDTAGGP-VTFDEKGDRGSKPVYVGQVQK 354 (366)
T ss_pred HHHHHHHHHHHHhc-----CCCHHHHHHHHhhCCCCccCCcc-eeECCCCCcCCCceEEEEEEe
Confidence 45566666665554 1225557778887764 555554 999998886 46788888864
No 60
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=20.37 E-value=90 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=17.8
Q ss_pred cCCCCceeeeeCCCCeeEEccccCCCC
Q psy6049 126 PCDRGQAKQYLEGESCCWHCFNCTQYH 152 (241)
Q Consensus 126 ~C~pG~rK~~~~g~~CCw~Cv~C~~ge 152 (241)
+.+||+.+. +..+|||-|.|.+++.
T Consensus 136 ~~ppg~VRg--en~p~g~i~~Pl~~~p 160 (202)
T cd08902 136 EARPNFVRG--FNHPCGWFCVPLKDNP 160 (202)
T ss_pred CCCCCeEee--cccccEEEEEECCCCC
Confidence 357777654 3348999999988763
Done!