Query psy6049
Match_columns 241
No_of_seqs 216 out of 1323
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 01:13:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e4u_A Metabotropic glutamate 100.0 3.5E-29 1.2E-33 240.0 9.9 128 5-152 371-514 (555)
2 3ks9_A Mglur1, metabotropic gl 99.8 8.1E-19 2.8E-23 166.6 8.8 100 5-121 388-496 (496)
3 3mq4_A Mglur7, metabotropic gl 99.6 1.1E-16 3.9E-21 150.8 5.3 86 5-91 381-475 (481)
4 3sm9_A Mglur3, metabotropic gl 99.6 5.4E-16 1.8E-20 146.6 6.0 85 5-91 370-470 (479)
5 1jdp_A NPR-C, atrial natriuret 99.1 1.1E-10 3.9E-15 107.1 5.6 74 6-83 321-394 (441)
6 3qek_A NMDA glutamate receptor 99.0 3E-10 1E-14 102.4 6.6 80 6-91 284-377 (384)
7 1dp4_A Atrial natriuretic pept 98.9 8.2E-10 2.8E-14 100.6 6.4 94 6-122 324-420 (435)
8 4gpa_A Glutamate receptor 4; P 98.9 3.5E-09 1.2E-13 94.1 7.4 78 6-89 283-378 (389)
9 4f11_A Gamma-aminobutyric acid 98.6 2E-08 6.7E-13 91.8 3.6 87 6-115 320-421 (433)
10 3qel_B Glutamate [NMDA] recept 98.4 1.8E-07 6.1E-12 85.1 5.9 77 6-89 266-357 (364)
11 3o21_A Glutamate receptor 3; p 97.9 7.7E-06 2.6E-10 74.3 5.2 72 6-83 285-373 (389)
12 3om0_A Glutamate receptor, ion 97.8 1.9E-05 6.6E-10 71.0 5.5 72 6-83 291-374 (393)
13 3hsy_A Glutamate receptor 2; l 97.7 3E-05 1E-09 69.7 5.0 72 6-83 279-367 (376)
14 3saj_A Glutamate receptor 1; r 97.6 4.2E-05 1.4E-09 68.8 5.1 78 6-89 282-377 (384)
15 3kg2_A Glutamate receptor 2; I 97.5 4.3E-05 1.5E-09 75.2 3.5 72 6-83 279-367 (823)
16 3h6g_A Glutamate receptor, ion 96.1 0.0033 1.1E-07 56.2 3.4 72 6-83 295-376 (395)
17 4eyg_A Twin-arginine transloca 96.0 0.0094 3.2E-07 52.1 5.9 71 6-83 288-359 (368)
18 1usg_A Leucine-specific bindin 95.5 0.006 2.1E-07 52.8 2.7 59 6-73 283-342 (346)
19 3td9_A Branched chain amino ac 94.7 0.022 7.5E-07 49.9 3.9 67 6-84 296-363 (366)
20 3ipc_A ABC transporter, substr 94.0 0.051 1.8E-06 47.2 4.8 68 6-82 282-350 (356)
21 4evq_A Putative ABC transporte 93.9 0.047 1.6E-06 47.7 4.3 66 6-81 296-361 (375)
22 3hut_A Putative branched-chain 92.0 0.12 4.2E-06 44.8 4.1 58 6-73 285-345 (358)
23 3n0w_A ABC branched chain amin 90.5 0.17 5.8E-06 44.5 3.6 56 6-67 289-344 (379)
24 3i09_A Periplasmic branched-ch 89.6 0.24 8.2E-06 43.4 3.7 55 6-67 286-340 (375)
25 3h5l_A Putative branched-chain 89.4 0.12 4E-06 46.3 1.6 55 6-61 311-366 (419)
26 3i45_A Twin-arginine transloca 85.0 0.87 3E-05 40.0 4.6 66 6-82 292-358 (387)
27 1pea_A Amidase operon; gene re 80.9 1.4 4.7E-05 38.8 4.2 53 6-65 292-345 (385)
28 3n0x_A Possible substrate bind 79.1 1.5 5.3E-05 38.4 3.9 59 6-71 291-350 (374)
29 4gnr_A ABC transporter substra 77.9 1.6 5.3E-05 37.8 3.5 58 6-75 289-347 (353)
30 4f06_A Extracellular ligand-bi 67.9 5.8 0.0002 34.7 4.8 69 6-81 291-360 (371)
31 3lkb_A Probable branched-chain 55.1 4.1 0.00014 35.6 1.4 70 6-83 293-374 (392)
32 3snr_A Extracellular ligand-bi 54.4 4.6 0.00016 34.4 1.6 64 6-73 290-358 (362)
33 3lop_A Substrate binding perip 42.7 31 0.001 29.5 5.0 49 6-60 292-342 (364)
34 3eaf_A ABC transporter, substr 39.2 9 0.00031 33.5 1.0 72 6-82 296-370 (391)
35 3sg0_A Extracellular ligand-bi 37.2 11 0.00039 32.2 1.3 60 6-66 314-378 (386)
36 1du3_A Death receptor 5; trail 30.9 15 0.00051 28.4 0.9 26 121-151 22-47 (130)
37 2bbx_A Trap, thrombospondin-re 25.0 32 0.0011 21.8 1.6 18 119-136 10-27 (49)
38 3urf_Z Tumor necrosis factor r 24.6 40 0.0014 27.3 2.5 15 120-134 16-30 (171)
39 1vex_A F-spondin; TSR, cell ad 23.1 33 0.0011 21.9 1.4 18 119-136 12-29 (56)
40 1tvs_A Transactivator protein; 22.8 15 0.00051 26.2 -0.4 10 140-149 32-41 (75)
41 3vdj_A Circumsporozoite (CS) p 21.5 24 0.00084 25.3 0.5 18 119-136 25-42 (77)
No 1
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.96 E-value=3.5e-29 Score=239.96 Aligned_cols=128 Identities=27% Similarity=0.529 Sum_probs=112.9
Q ss_pred ehHHHHHhhhhhhhCCC---------cCCCCCceeccc-ccccceec------CCCCCeEEeccCCCCcceeeEEEeEEc
Q psy6049 5 ITYFVMVTYLPNKLGIH---------VDFNTPRVKFPP-RADNDNIA------GLSGDKFKFDANGDGPARYNIIHFKEM 68 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~~~---------~~~~~~~~~l~~-yL~~v~F~------~~~g~~v~Fd~nGd~~~~YdI~n~~~~ 68 (241)
-|||+||||||+++.+. .....++|+|++ +|++++|. +.+|+++.||++||..+.|||+||+.
T Consensus 371 dAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~y~I~~~~~- 449 (555)
T 2e4u_A 371 NAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQ- 449 (555)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCccceEEEEEEEe-
Confidence 37999999999997521 111246799999 99999999 99999999999999999999999986
Q ss_pred CCCceeEEEEEEEECceEEEecCCCCCCcceeecCCCCceeecCCCCCCCCcccccCcCCCCceeeeeCCCCeeEEcccc
Q psy6049 69 SPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNC 148 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~SvCS~~C~pG~rK~~~~g~~CCw~Cv~C 148 (241)
.+|...+++||+|+. .|.|+.+ .|.|.. +++|.|+||++|+||+||..++|++|||+|++|
T Consensus 450 ~~g~~~~~~VG~~~~-~l~i~~~----------------~I~W~~--~~~P~S~CS~~C~pG~rk~~~~g~~CC~~C~~C 510 (555)
T 2e4u_A 450 TGGKYSYLKVGHWAE-TLSLDVD----------------SIHWSR--NSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPC 510 (555)
T ss_dssp TTSSCEEEEEEEESS-SEECCGG----------------GCCCTT--SSCCCCCSSCCCCTTTEEEECCSSSSCCEEEEC
T ss_pred cCCcEEEEEEEEecc-eEEEecc----------------ccccCC--CCCcceeeCCCCCCCeeeeecCCCeeEEECccC
Confidence 677778999999985 7888887 899976 589999999999999999999999999999999
Q ss_pred CCCC
Q psy6049 149 TQYH 152 (241)
Q Consensus 149 ~~ge 152 (241)
|+||
T Consensus 511 ~~~~ 514 (555)
T 2e4u_A 511 EPYE 514 (555)
T ss_dssp CTTE
T ss_pred CCce
Confidence 9999
No 2
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.76 E-value=8.1e-19 Score=166.63 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=76.7
Q ss_pred ehHHHHHhhhhhhhCCC--------cCC-CCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeE
Q psy6049 5 ITYFVMVTYLPNKLGIH--------VDF-NTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~~~--------~~~-~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~ 75 (241)
-|||+||||||+|+.+. .++ ...+|||++||++|+|++..|++|.||++||+.+.|||+||+..++|...+
T Consensus 388 ~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~~~~~ 467 (496)
T 3ks9_A 388 NAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDY 467 (496)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--CEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCCCEEE
Confidence 38999999999998421 111 136899999999999999999999999999999999999999889999999
Q ss_pred EEEEEEECceEEEecCCCCCCcceeecCCCCceeecCCCCCCCCcc
Q psy6049 76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPES 121 (241)
Q Consensus 76 v~VG~~~~~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~S 121 (241)
++||+|+..+|.|+++ +| |+.+..++|.+
T Consensus 468 ~~VG~~~~~~l~i~~~----------------~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 468 VHVGTWHEGVLNIDDY----------------KI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEEEEETTEEEECTT----------------TC------------
T ss_pred EEEEEEeCCeEEEehh----------------hc-ccCCCCCCCCC
Confidence 9999999878999988 78 77776778864
No 3
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.63 E-value=1.1e-16 Score=150.80 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=70.2
Q ss_pred ehHHHHHhhhhhhhCCCc----CCC-----CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeE
Q psy6049 5 ITYFVMVTYLPNKLGIHV----DFN-----TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~~~~----~~~-----~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~ 75 (241)
-|||+||||||+|+.+.. ..| ..+|||++||++++|++..|++|.||++||+.+.|||+||+..+++...+
T Consensus 381 ~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~~~~~~~~ 460 (481)
T 3mq4_A 381 DAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGY 460 (481)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC-----CCCE
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEECCCCcEEE
Confidence 489999999999985311 112 35899999999999999999999999999999999999998766666788
Q ss_pred EEEEEEECceEEEecC
Q psy6049 76 VRVGEYVEGELRLNLS 91 (241)
Q Consensus 76 v~VG~~~~~~l~in~~ 91 (241)
++||+|+ .+|.|+++
T Consensus 461 ~~VG~~~-~~l~i~~~ 475 (481)
T 3mq4_A 461 RLIGQWT-DELQLNIE 475 (481)
T ss_dssp EEEEEEE-TTEEEECS
T ss_pred EEEEEEc-CccEeccc
Confidence 9999998 47999988
No 4
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=146.59 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=73.5
Q ss_pred ehHHHHHhhhhhhhC--CCcC--CC-----CCceecc-cccccceecCC------CCCeEEeccCCCCcceeeEEEeEEc
Q psy6049 5 ITYFVMVTYLPNKLG--IHVD--FN-----TPRVKFP-PRADNDNIAGL------SGDKFKFDANGDGPARYNIIHFKEM 68 (241)
Q Consensus 5 ~~~~~ma~aLh~~l~--~~~~--~~-----~~~~~l~-~yL~~v~F~~~------~g~~v~Fd~nGd~~~~YdI~n~~~~ 68 (241)
-|||+||||||+|+. |... .| ..+|||+ +||++++|++. .|++|.||++||+.+.|||+||+..
T Consensus 370 ~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI~n~~~~ 449 (479)
T 3sm9_A 370 NAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNV 449 (479)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEEEEEEEC
Confidence 389999999999986 4221 12 3689999 99999999998 8999999999999999999999986
Q ss_pred CCCceeEEEEEEEECceEEEecC
Q psy6049 69 SPGSYEWVRVGEYVEGELRLNLS 91 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~~~l~in~~ 91 (241)
+|...+++||+|+ .+|.|+++
T Consensus 450 -~~~~~~~~VG~~~-~~l~i~~~ 470 (479)
T 3sm9_A 450 -GGKYSYLKVGHWA-ETLSLDVN 470 (479)
T ss_dssp -SSCEEEEEEEEES-SSEEECGG
T ss_pred -CCcEEEEEEEEEe-ceEEEecc
Confidence 8889999999998 57999988
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.06 E-value=1.1e-10 Score=107.11 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=62.7
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
|++++|+|||+++.+... ..++++|+++|++++|.|.+| .+.||++||..+.|+|+||+..++| .+++||.|++
T Consensus 321 Av~~~A~Al~~~~~~~~~-~~~~~~l~~~l~~~~f~g~~G-~v~fd~~Gd~~~~~~I~~~~~~~~g--~~~~VG~~~~ 394 (441)
T 1jdp_A 321 AILLYVLALHEVLRAGYS-KKDGGKIIQQTWNRTFEGIAG-QVSIDANGDRYGDFSVIAMTDVEAG--TQEVIGDYFG 394 (441)
T ss_dssp HHHHHHHHHHHHHHTTCC-TTCHHHHHHHHSSEEEEETTE-EEEECTTSBBCCEEEEEEEEETTTT--EEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCCeeECCcc-ceEECCCCCccccEEEEecccCCCC--ceEEEEEEcC
Confidence 789999999999744211 246889999999999998777 5999999999999999999887777 4899999986
No 6
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.01 E-value=3e-10 Score=102.44 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=62.8
Q ss_pred hHHHHHhhhhhhhCCCcC-----CC---CCceecccccccc----ee-cCCCCCeEEeccCCCC-cceeeEEEeEEcCCC
Q psy6049 6 TYFVMVTYLPNKLGIHVD-----FN---TPRVKFPPRADND----NI-AGLSGDKFKFDANGDG-PARYNIIHFKEMSPG 71 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~-----~~---~~~~~l~~yL~~v----~F-~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g 71 (241)
|||+||||||+++.+... .| ..+|++..+|+++ +| .|.+| .+.||++|+. ...|||+||+.
T Consensus 284 AV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G-~v~fd~~G~~~~~~~~I~~~~~---- 358 (384)
T 3qek_A 284 AVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTG-RIEFNEDGDRKFAQYSIMNLQN---- 358 (384)
T ss_dssp HHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTE-EECBCTTSCBCSCCEEEEEEET----
T ss_pred HHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCc-ceEECCCCCCCcccEEEEEEcC----
Confidence 789999999999864321 12 3588866665554 66 66677 7999999997 79999999973
Q ss_pred ceeEEEEEEEECceEEEecC
Q psy6049 72 SYEWVRVGEYVEGELRLNLS 91 (241)
Q Consensus 72 ~~~~v~VG~~~~~~l~in~~ 91 (241)
..+++||.|++.++.|+++
T Consensus 359 -~~~~~VG~w~~~~l~i~~~ 377 (384)
T 3qek_A 359 -RKLVQVGIFNGSYIIQNDR 377 (384)
T ss_dssp -TEEEEEEEECSSSEEECSS
T ss_pred -CceEEEEEEeCCeEeeccc
Confidence 2589999999878999988
No 7
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.94 E-value=8.2e-10 Score=100.63 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=75.2
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEECc-
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEG- 84 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~~- 84 (241)
|++++|+|||+++.+.. ...++++|.++|++++|.|.+|. +.||++||..+.|+|++| ...+| .++.||.|+..
T Consensus 324 av~~~a~Al~~~~~~~~-~~~~~~~l~~~l~~~~f~g~~G~-v~fd~~g~~~~~~~i~~~-~~~~g--~~~~vg~~~~~~ 398 (435)
T 1dp4_A 324 GLLLYVQAVTETLAQGG-TVTDGENITQRMWNRSFQGVTGY-LKIDRNGDRDTDFSLWDM-DPETG--AFRVVLNYNGTS 398 (435)
T ss_dssp HHHHHHHHHHHHHHTTC-CTTCHHHHHHTTTTEEEEETTEE-EEECTTSBBCCCEEEEEE-CTTTC--CEEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHHhCceeecccee-EEECCCCCccceeEEEEe-cCCCC--cEEEEEEecCCC
Confidence 78899999999975421 13568899999999999999997 999999999999999999 33445 58999999863
Q ss_pred -eEEE-ecCCCCCCcceeecCCCCceeecCCCCCCCCccc
Q psy6049 85 -ELRL-NLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESV 122 (241)
Q Consensus 85 -~l~i-n~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~Sv 122 (241)
.+.+ +.+ .|.|.++ ++|.|.
T Consensus 399 ~~l~~~~~~----------------~i~W~~~--~~P~~~ 420 (435)
T 1dp4_A 399 QELMAVSEH----------------KLYWPLG--YPPPDV 420 (435)
T ss_dssp CCEEESTTC----------------CCCCTTS--SCCCSS
T ss_pred ceEEEcCCc----------------eeeCCCC--CCCCCC
Confidence 5777 555 8999764 677663
No 8
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.86 E-value=3.5e-09 Score=94.09 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=60.9
Q ss_pred hHHHHHhhhhhhhCCCcCCC------------CCcee----cccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN------------TPRVK----FPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~------------~~~~~----l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~ 68 (241)
||+++|+|||+++....+.. ..+|+ |+++|++++|.|.+| .|.||++||.. ..|||+|++.
T Consensus 283 AV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG-~v~Fd~~G~r~~~~~~I~~l~~- 360 (389)
T 4gpa_A 283 GVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTG-NVQFDHYGRRVNYTMDVFELKS- 360 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTE-EEEBCTTSCBCSCEEEEEEEET-
T ss_pred HHHHHHHHHHHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCce-eEEECCCCCCCCCEEEEEEEEC-
Confidence 78999999999976543321 23564 899999999999999 59999999975 6899999962
Q ss_pred CCCceeEEEEEEEEC-ceEEEe
Q psy6049 69 SPGSYEWVRVGEYVE-GELRLN 89 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~-~~l~in 89 (241)
+ .+++||.|++ ..|.+.
T Consensus 361 -~---~~~~VG~W~~~~gl~~~ 378 (389)
T 4gpa_A 361 -T---GPRKVGYWNDMDKLVLI 378 (389)
T ss_dssp -T---EEEEEEEEETTTEEEEC
T ss_pred -C---EEEEEEEEECCCCeEEC
Confidence 2 3789999997 345543
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.59 E-value=2e-08 Score=91.77 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=69.6
Q ss_pred hHHHHHhhhhhhhCCCcCC--C-------C----CceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCc
Q psy6049 6 TYFVMVTYLPNKLGIHVDF--N-------T----PRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGS 72 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~--~-------~----~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~ 72 (241)
|++++|+|||++..+.... + . .+++|.++|++++|.|.+|. +.| ++||....|+|++|+. |
T Consensus 320 Av~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~f-~~Gd~~~~~~I~~~~~---g- 393 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ-VVF-RNGERMGTIKFTQFQD---S- 393 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEE-EEE-ETTEEECEEEEEEEET---T-
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceE-EEE-ecCceeeeEEEEEEEC---C-
Confidence 7899999999986531110 1 1 26889999999999999997 999 8999999999999963 3
Q ss_pred eeEEEEEEEEC--ceEEEecCCCCCCcceeecCCCCceeecCCCC
Q psy6049 73 YEWVRVGEYVE--GELRLNLSGKFGPYFVEITDGMPQEIQFKAEH 115 (241)
Q Consensus 73 ~~~v~VG~~~~--~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~ 115 (241)
.+++||.|+. ..|.++++ .|.|..+.
T Consensus 394 -~~~~VG~~~~~~~~l~~~~~----------------~i~W~~~~ 421 (433)
T 4f11_A 394 -REVKVGEYNAVADTLEIIND----------------TIRFQGSE 421 (433)
T ss_dssp -EEEEEEEEETTTTEEEECTT----------------TCCCSSSS
T ss_pred -ceEEEEEEECCCCeEEEeCC----------------ceECCCCC
Confidence 5789999985 46888877 89998653
No 10
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.44 E-value=1.8e-07 Score=85.15 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=58.6
Q ss_pred hHHHHHhhhhhhhCCC------cCCCC--------CceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcCC
Q psy6049 6 TYFVMVTYLPNKLGIH------VDFNT--------PRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSP 70 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~------~~~~~--------~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~ 70 (241)
||++||+|+|+++... ...|. .+.+|.+||++++|+|. .+.||++|+.. ..|||+|++.
T Consensus 266 aV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl---~i~F~~~G~~~~~~~~Iinl~~--- 339 (364)
T 3qel_B 266 GIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR---DLSFSEDGYQMHPKLVIILLNK--- 339 (364)
T ss_dssp HHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE---ECCBCTTSSBSSCCEEEEEECT---
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc---eEEECCCCCcccceEEEEEEcC---
Confidence 7899999999987521 11221 23468899999999875 79999999986 7999999953
Q ss_pred CceeEEEEEEEECceEEEe
Q psy6049 71 GSYEWVRVGEYVEGELRLN 89 (241)
Q Consensus 71 g~~~~v~VG~~~~~~l~in 89 (241)
...+++||.|+.+.|.++
T Consensus 340 -~~~~~~VG~W~~~~L~~~ 357 (364)
T 3qel_B 340 -ERKWERVGKWKDKSLQMK 357 (364)
T ss_dssp -TSCEEEEEEECSSCEEES
T ss_pred -CCCcEEEEEECCCeEEeC
Confidence 125789999987666664
No 11
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=97.93 E-value=7.7e-06 Score=74.29 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=55.7
Q ss_pred hHHHHHhhhhhhhCCCc--------CCC----CCce----ecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHV--------DFN----TPRV----KFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~--------~~~----~~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~ 68 (241)
|++++|+|++++..... ..| ..+| +|.++|++++|.|.+| .+.||++||.. ..|+|++|.
T Consensus 285 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~Fd~~G~~~~~~~~i~~~~-- 361 (389)
T 3o21_A 285 AILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTG-NIQFDTYGRRTNYTIDVYEMK-- 361 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTE-EECBCTTSBBCSCCEEEEEEE--
T ss_pred HHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccce-eeeeCCCCCcccceEEEEEEc--
Confidence 67999999999873211 112 1234 5899999999999999 59999999975 689999995
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 362 ~~g---~~~VG~w~~ 373 (389)
T 3o21_A 362 VSG---SRKAGYWNE 373 (389)
T ss_dssp TTE---EEEEEEEET
T ss_pred CCC---ceeeeEEcC
Confidence 333 689999986
No 12
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.80 E-value=1.9e-05 Score=71.01 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=55.5
Q ss_pred hHHHHHhhhhhhhCCC-----cCCC------CCceecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEcCCCce
Q psy6049 6 TYFVMVTYLPNKLGIH-----VDFN------TPRVKFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSPGSY 73 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~-----~~~~------~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~ 73 (241)
|++++|+||+++.... ...| .++.+|..+|++++|.|.+| .+.||++||. ...|+|++|+ .+
T Consensus 291 Av~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i~~~~--~~--- 364 (393)
T 3om0_A 291 AVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTG-RVEFNSKGQRTNYTLRILEKS--RQ--- 364 (393)
T ss_dssp HHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTE-EECBCTTSCBCSCEEEEEEEE--TT---
T ss_pred HHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccc-eEEeCCCCcccceeEEEEEec--cC---
Confidence 6899999999874210 0111 23446899999999999999 4999999998 5899999996 22
Q ss_pred eEEEEEEEEC
Q psy6049 74 EWVRVGEYVE 83 (241)
Q Consensus 74 ~~v~VG~~~~ 83 (241)
.+++||.|++
T Consensus 365 g~~~VG~w~~ 374 (393)
T 3om0_A 365 GHREIGVWYS 374 (393)
T ss_dssp EEEEEEEEEC
T ss_pred CceEeeeEcC
Confidence 3789999986
No 13
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.69 E-value=3e-05 Score=69.68 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=55.5
Q ss_pred hHHHHHhhhhhhhCCCc--------CCC----CCce----ecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHV--------DFN----TPRV----KFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~--------~~~----~~~~----~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~ 68 (241)
|++++|+|++++..... ..| ..+| +|.++|++++|.|.+| .+.||++||. ...|+|+++.
T Consensus 279 av~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i~~~~-- 355 (376)
T 3hsy_A 279 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG-NIKFDQNGKRINYTINIMELK-- 355 (376)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTE-EECBCTTSBBCSCEEEEEEEE--
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCcc-ceeECCCCCCccceEEEEEec--
Confidence 67899999999763110 012 2344 6899999999999999 6999999996 4799999995
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 356 ~~g---~~~VG~w~~ 367 (376)
T 3hsy_A 356 TNG---PRKIGYWSE 367 (376)
T ss_dssp TTE---EEEEEEEET
T ss_pred CCC---ceEEEEEcC
Confidence 333 589999986
No 14
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=97.64 E-value=4.2e-05 Score=68.78 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=58.2
Q ss_pred hHHHHHhhhhhhhCCC--------cCCC--------CCceecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIH--------VDFN--------TPRVKFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~--------~~~~--------~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~ 68 (241)
|++++++|++++..-. ...| .++.+|..+|++++|.|.+|. +.||++||. ...|+|++++.
T Consensus 282 av~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~~~~~~~i~~~~~- 359 (384)
T 3saj_A 282 GVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN-VQFNEKGRRTNYTLHVIEMKH- 359 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEE-ECBCTTSBBCSCCEEEEEEET-
T ss_pred HHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCccccee-eEeCCCCCcccceEEEEEecc-
Confidence 6889999999876311 1112 245578999999999999997 999999996 47899999862
Q ss_pred CCCceeEEEEEEEEC-ceEEEe
Q psy6049 69 SPGSYEWVRVGEYVE-GELRLN 89 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~-~~l~in 89 (241)
+| +.+||.|++ ..+.+.
T Consensus 360 -~g---~~~VG~W~~~~gl~~~ 377 (384)
T 3saj_A 360 -DG---IRKIGYWNEDDKFVPA 377 (384)
T ss_dssp -TE---EEEEEEEETTTEEEEC
T ss_pred -CC---cceeEEEcCCCCcccc
Confidence 22 578999986 345443
No 15
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.51 E-value=4.3e-05 Score=75.17 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=56.3
Q ss_pred hHHHHHhhhhhhhCCCcCC--------C--------CCceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEc
Q psy6049 6 TYFVMVTYLPNKLGIHVDF--------N--------TPRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEM 68 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~--------~--------~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~ 68 (241)
|++++|+|||++.....+. | .++.++.++|++++|.|.+|. +.||++||.. ..|+|+|++
T Consensus 279 Av~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~~~~~~~I~~~~-- 355 (823)
T 3kg2_A 279 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN-IKFDQNGKRINYTINIMELK-- 355 (823)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEE-CCBCSSSCBCSCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccC-eEECCCCcccccEEEEEEEc--
Confidence 7899999999987532221 1 124469999999999999996 9999999975 789999985
Q ss_pred CCCceeEEEEEEEEC
Q psy6049 69 SPGSYEWVRVGEYVE 83 (241)
Q Consensus 69 ~~g~~~~v~VG~~~~ 83 (241)
.+| +++||.|++
T Consensus 356 ~~g---~~~vg~w~~ 367 (823)
T 3kg2_A 356 TNG---PRKIGYWSE 367 (823)
T ss_dssp SSC---EEEEEEEET
T ss_pred CCC---CeeEEEEcC
Confidence 223 569999986
No 16
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=96.06 E-value=0.0033 Score=56.17 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=54.0
Q ss_pred hHHHHHhhhhhhhCCCcC--CC------CCceecccccccceecCCCCCeEEecc-CCCCcc-eeeEEEeEEcCCCceeE
Q psy6049 6 TYFVMVTYLPNKLGIHVD--FN------TPRVKFPPRADNDNIAGLSGDKFKFDA-NGDGPA-RYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~--~~------~~~~~l~~yL~~v~F~~~~g~~v~Fd~-nGd~~~-~YdI~n~~~~~~g~~~~ 75 (241)
|++++++|+++.-..... .| .++.++..+|+++.|.|.+|. +.||+ +|+... .|+|++++. + .+
T Consensus 295 av~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~-i~fd~~~G~~~~~~~~i~~~~~---~--~~ 368 (395)
T 3h6g_A 295 AVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGR-ITFNKTNGLRTDFDLDVISLKE---E--GL 368 (395)
T ss_dssp HHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEE-EECCTTTSEECCCCEEEEEEET---T--EE
T ss_pred HHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCccee-eEecCCCCeecCCeEEEEEecc---C--Cc
Confidence 678899999886432111 12 234468899999999999985 99998 999864 899999862 2 36
Q ss_pred EEEEEEEC
Q psy6049 76 VRVGEYVE 83 (241)
Q Consensus 76 v~VG~~~~ 83 (241)
+.||.|++
T Consensus 369 ~~vG~w~~ 376 (395)
T 3h6g_A 369 EKIGTWDP 376 (395)
T ss_dssp EEEEEEET
T ss_pred eEEEEEcC
Confidence 89999986
No 17
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=95.97 E-value=0.0094 Score=52.14 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=57.6
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEec-cCCCCcceeeEEEeEEcCCCceeEEEEEEEEC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFD-ANGDGPARYNIIHFKEMSPGSYEWVRVGEYVE 83 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd-~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~ 83 (241)
+++++++||++.- ....+.++.+.|++++|.+..| .+.|| ++|+....+.|.+++.. +|.+..+.+|+|+.
T Consensus 288 a~~~~~~al~~~g-----~~~~~~~l~~al~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~-~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 288 GIHLVFEALKKTG-----GKADGDSLIAAMKGMKWESPRG-PISIDPETRDIVQNIYIRKVEKV-DGELYNIEFAKFDA 359 (368)
T ss_dssp HHHHHHHHHHHTT-----TCCSHHHHHHHHTTCEEEETTE-EEEECTTTCCEEEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHHHcCCcccCCC-CeEECcccCCcccceEEEEEEec-CCeEEEEEeecccc
Confidence 6778899998852 1345778999999999999988 59999 88998888889988754 78888888988763
No 18
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=95.52 E-value=0.006 Score=52.80 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=47.5
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcCCCce
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSPGSY 73 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~g~~ 73 (241)
|++++++||++.- ...+.++.+.|++++|.|.+| .+.||++||.. ..|+|++|+ .+|.+
T Consensus 283 a~~~~~~al~~~g------~~~~~~l~~~l~~~~~~g~~G-~i~f~~~g~~~~~~~~i~~~~--~~G~~ 342 (346)
T 1usg_A 283 AVQSLATALERTG------SDEPLALVKDLKANGANTVIG-PLNWDEKGDLKGFDFGVFQWH--ADGSS 342 (346)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHCEEETTE-EECBCTTSSBSSCCCEEEEEC--TTSCE
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHhCCCcccee-eeEECCCCCccCCceEEEEEe--cCCEE
Confidence 6788999999862 235778999999999999998 79999999986 679999884 25643
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=94.70 E-value=0.022 Score=49.92 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccce-ecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEEECc
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDN-IAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEG 84 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~-F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~~~ 84 (241)
++++++.||.+.-. ..+..+.+.|+++. |.|.+|. +.||++|+....+.|++++ +| .++.||.|++.
T Consensus 296 a~~~~~~al~~ag~------~~~~~~~~~l~~~~~~~g~~G~-i~f~~~g~~~~~~~i~~~~---~g--~~~~v~~~~~~ 363 (366)
T 3td9_A 296 AYMVLLDAIERAGS------FDREKIAEEIRKTRNFNGASGI-INIDENGDAIKSVVVNIVK---NG--SVDFEAVINPD 363 (366)
T ss_dssp HHHHHHHHHHHHTS------CCHHHHHHHHTTCCSEEETTEE-ECBCTTSCBCCCEEEEEEE---TT--EEEEEEEECGG
T ss_pred HHHHHHHHHHHhCC------CCHHHHHHHHHhCCCCccccee-eEECCCCCccCceEEEEEE---CC--EEEEEEecChh
Confidence 56788899987522 45778899999997 9999885 9999999998778888885 55 46778888753
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=94.04 E-value=0.051 Score=47.22 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCc-ceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
++.+++.||.+.-. ..+..+...|++..|.|.+|. +.||++|+.. ..|.|++|+..++|. |+.+..|.
T Consensus 282 a~~~~~~al~~ag~------~~~~~~~~~l~~~~~~g~~G~-~~f~~~g~~~~~~~~i~~~~~~~~G~--~~~~~~~~ 350 (356)
T 3ipc_A 282 AMQAIAGAAKAAGS------VEPEKVAEALKKGSFPTALGE-ISFDEKGDPKLPGYVMYEWKKGPDGK--FTYIQQGS 350 (356)
T ss_dssp HHHHHHHHHHHHTC------CCHHHHHHHHTTCCBCCTTSS-BCBCTTSCBCCCCCEEEEEEECTTSS--EEEEEC--
T ss_pred HHHHHHHHHHHhCC------CCHHHHHHHHHhCCCCCccee-eEECCCCCccCCCeEEEEEEECCCCc--EEEEeccc
Confidence 56788888887522 446678899999999999995 9999999986 479999997555575 45555553
No 21
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=93.90 E-value=0.047 Score=47.71 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=50.8
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEY 81 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v~VG~~ 81 (241)
+++++++||++.-. ..+.+.++.+.|++++|.|.+|. +.||++|+....+.|.+|+ +| .++.||.+
T Consensus 296 a~~~~~~al~~~g~----~~~~~~~l~~~l~~~~~~g~~G~-i~f~~~g~~~~~~~i~~~~---~g--~~~~v~~~ 361 (375)
T 4evq_A 296 AGQLLDAGVKAVGG----DVAKRKELNAAMAAASFASPRGP-FKLSAAHNPVQNFYLRELK---GG--KSVNLGLA 361 (375)
T ss_dssp HHHHHHHHHHHTTT----CTTCHHHHHHHHHTCEEEETTEE-EEBCTTSCBCCCEEEEEEE---TT--EEEEEEEE
T ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHHHhcCCcccCCcc-eeECCCCCccccEEEEEEE---CC--CcEEeeeh
Confidence 56788899987421 12457789999999999999985 9999999998889998885 45 35566654
No 22
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=91.96 E-value=0.12 Score=44.80 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=45.6
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCcee-cccccccc-eecCCCCCeEEeccCCCC-cceeeEEEeEEcCCCce
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVK-FPPRADND-NIAGLSGDKFKFDANGDG-PARYNIIHFKEMSPGSY 73 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~-l~~yL~~v-~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~ 73 (241)
|+.+++.||.+.- ..++.+ +.+.|+++ .|.|.+| .+.||++|+. ...+.|++++ +|.+
T Consensus 285 a~~~~~~al~~ag------~~~~~~~~~~~l~~~~~~~g~~G-~~~f~~~g~~~~~~~~i~~~~---~G~~ 345 (358)
T 3hut_A 285 AVGIMLAAVGRAG------PEVTRESLRDALAATDRYAGVTG-ITRFDPETRETTKILTRLVVR---EGDF 345 (358)
T ss_dssp HHHHHHHHHHHHC------TTCCHHHHHHHHHTCCSEEETTE-EEEECTTTCCEEECCEEEEEE---TTEE
T ss_pred HHHHHHHHHHHhC------CCChHHHHHHHHHhcCCCcCCce-eeEECCCCCcCCCceEEEEEE---CCEE
Confidence 5678888998752 234566 88999999 9999988 6999999998 6788898885 5643
No 23
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=90.53 E-value=0.17 Score=44.53 Aligned_cols=56 Identities=5% Similarity=-0.078 Sum_probs=45.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKE 67 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~ 67 (241)
+++++++||++.- .+++..+.+.|++++|.+..|..+.||++|+....+.|++++.
T Consensus 289 a~~~~~~Al~~ag------~~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~ 344 (379)
T 3n0w_A 289 AALQYLKAVNAIG------SKDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKK 344 (379)
T ss_dssp HHHHHHHHHHHHT------CCCHHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECC
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEc
Confidence 5788899999862 2456789999999999988887789999999887788888753
No 24
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=89.59 E-value=0.24 Score=43.41 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=44.3
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKE 67 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~ 67 (241)
+++++++||++.- ..++..+.+.|++++|.+..|. +.||++|+....+.|+.++.
T Consensus 286 a~~~~~~Al~~ag------~~~~~~l~~aL~~~~~~~~~G~-~~f~~~g~~~~~~~i~~v~~ 340 (375)
T 3i09_A 286 SVTTYLKAVQAAG------STDSDKVMAQLKKMKIDDFYAK-GYIRTDGSMIHDMYLMEVKK 340 (375)
T ss_dssp HHHHHHHHHHHHT------SCCHHHHHHHHTTSCEESSSCE-EEECTTSBEECCEEEEEECC
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHhCCCccCCCCc-eEECCCCCeeeeeEEEEEec
Confidence 5778899998862 2456678999999999999997 99999999876677777753
No 25
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=89.43 E-value=0.12 Score=46.32 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=39.4
Q ss_pred hHHHHHhhhhhhhCCCcCCC-CCceecccccccceecCCCCCeEEeccCCCCcceee
Q psy6049 6 TYFVMVTYLPNKLGIHVDFN-TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYN 61 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~-~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~Yd 61 (241)
+++++++|+++......... .++..+.+.|++++|.|.+|. +.||++|+....|+
T Consensus 311 a~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~-i~f~~~g~~~~~~~ 366 (419)
T 3h5l_A 311 ALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGT-MRFHADTQSAWSYP 366 (419)
T ss_dssp HHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEE-EEBCTTTCBBCEET
T ss_pred HHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceE-EEECCCCCcccccc
Confidence 46678888887654322111 235678999999999999985 99999999654443
No 26
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=84.98 E-value=0.87 Score=40.03 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=47.4
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEecc-CCCCcceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDA-NGDGPARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~-nGd~~~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
|++++++||++.- ...+.++...|++++|.+.+|. +.||. +++......|..++. .+|. ..++.|.
T Consensus 292 a~~~~a~Al~~ag------~~~~~~v~~al~~~~~~g~~G~-i~f~~~~~~~~~~~~i~~~~~-~~g~---~~i~~w~ 358 (387)
T 3i45_A 292 TLTAMAVAFEKAG------GTESETLVETLKDMAFSTPMGP-LSFRASDHQSTMGAWVGRTAL-RDGK---GVMVDWR 358 (387)
T ss_dssp HHHHHHHHHHHHT------SCCHHHHHHHTTTCEEEETTEE-EEBCTTTCBBCCCEEEEEEEE-ETTE---EEEEEEE
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHhcCCCcCCCCC-eEEcCCCCccccceeEEEEEe-eCCc---eeEEeeE
Confidence 6788999999861 2457789999999999999885 99996 555555555665543 2342 5667775
No 27
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=80.93 E-value=1.4 Score=38.78 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=40.1
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccC-CCCcceeeEEEe
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDAN-GDGPARYNIIHF 65 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~n-Gd~~~~YdI~n~ 65 (241)
|++++++||++.- ..++..+.+.|++++|.+.+| .+.||++ ++....+.|.++
T Consensus 292 a~~~~~~Al~~ag------~~~~~~l~~al~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~ 345 (385)
T 1pea_A 292 QTLLLGRAAQAAG------NWRVEDVQRHLYDIDIDAPQG-PVRVERQNNHSRLSSRIAEI 345 (385)
T ss_dssp HHHHHHHHHHHHT------SCCHHHHHHHHTTCCEEETTE-EEEECTTTSCEEBCCEEEEE
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHhhCcccCCCC-CeEEcCCCCccccceEEEEE
Confidence 5678889998862 134677889999999999888 5999984 455556777766
No 28
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=79.10 E-value=1.5 Score=38.36 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=43.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEecc-CCCCcceeeEEEeEEcCCC
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDA-NGDGPARYNIIHFKEMSPG 71 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~-nGd~~~~YdI~n~~~~~~g 71 (241)
++++++.||.+.= .+++-.+.+.|++++|.+..| .+.||. ++++...+.|++++...++
T Consensus 291 a~~~l~~Al~~ag------~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~~~ 350 (374)
T 3n0x_A 291 AAMAVVTAVQKAK------STDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDPAV 350 (374)
T ss_dssp HHHHHHHHHHHHT------SCCHHHHHHHHTTCEEEETTE-EEEECTTTCBEECCEEEEEEECCTTS
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHhcCCccCCCC-CEEECcccCccccceEEEEEEeCCCc
Confidence 5678888888752 245677899999999999888 599994 6777667778887644333
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=77.89 E-value=1.6 Score=37.77 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=39.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccc-eecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADND-NIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEW 75 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v-~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~ 75 (241)
++.+++.|+.+. ..+-.+.+.|.++ .|.|.+| .+.||++||....+-|+.++ +|.+..
T Consensus 289 a~~~la~Ai~~a--------~~~~~v~~aL~~~~~~~g~~G-~i~f~~~g~~~~~~~i~~v~---~Gk~~~ 347 (353)
T 4gnr_A 289 SVHLVANAAKGA--------KNSGEIKDNLAXTKDFEGVTG-QTSFDADHNTVKTAYMMTMN---NGKVEA 347 (353)
T ss_dssp HHHHHHHHHTTC--------SSHHHHHHHHHTCCCEEETTE-EECCCTTSCCCCCEEEEEEE---TTEEEE
T ss_pred HHHHHHHHHhcC--------CCHHHHHHHHHhcCCCccCce-eEEECCCcCCcCCeEEEEEE---CCEEEE
Confidence 456677777531 2345577778777 5999888 59999999997666677664 565443
No 30
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=67.85 E-value=5.8 Score=34.70 Aligned_cols=69 Identities=6% Similarity=0.007 Sum_probs=45.5
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceecCCCCCeEEeccCCCC-cceeeEEEeEEcCCCceeEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDG-PARYNIIHFKEMSPGSYEWVRVGEY 81 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~~~v~VG~~ 81 (241)
++.+++.|+... ...+++-.+...|+++.|.+..| .+.||.+++. ...+-|..++. .+|.+.++.++.+
T Consensus 291 a~~~l~~Ai~~~-----ag~~d~~~v~~al~~~~~~~~~G-~i~fd~~~~~~~~~~~i~~v~~-~dGk~v~~~~~~~ 360 (371)
T 4f06_A 291 GARLIYKMIEAT-----SGKSDPDKAIAAVKGMKWVSPRG-EVSIDPETRHITQNVYLREVEK-VDGKLINRELETF 360 (371)
T ss_dssp HHHHHHHHHHHT-----TTSCCHHHHHHHHTTCEEEETTE-EEEECTTTCBEEEEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHh-----cCCCCHHHHHHHHhCCCeeCCcE-EEEEcCCCCcccCCEEEEEEEe-cCCEEEEEEEEEE
Confidence 345666777542 22345667889999999999988 5999977664 33444555543 4676666666554
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=55.14 E-value=4.1 Score=35.60 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=48.0
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccce----ec-------CCCCCeEEeccCCCC-cceeeEEEeEEcCCCce
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDN----IA-------GLSGDKFKFDANGDG-PARYNIIHFKEMSPGSY 73 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~----F~-------~~~g~~v~Fd~nGd~-~~~YdI~n~~~~~~g~~ 73 (241)
++.+++.||.+.-.- .....+-.+...|+++. |. |.+|. +.||++|+. ...+.|.+++ +|
T Consensus 293 a~~~~~~al~~ag~~--~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~-i~f~~~~~~~~~~~~i~~~~---~g-- 364 (392)
T 3lkb_A 293 AAAIAVEAIRRAQER--FKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVE-IDFTKSEHTGAEGLRILEAK---GG-- 364 (392)
T ss_dssp HHHHHHHHHHHHHHH--HSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCS-BCCCSSCCEEECCBEEEEEE---TT--
T ss_pred HHHHHHHHHHHhhcc--CCCCCHHHHHHHHHhcCCCcCccccccccccccee-eEeCCCCcCCcccEEEEEEe---CC--
Confidence 566778888775320 01244667888999987 87 77774 899988875 3457777774 45
Q ss_pred eEEEEEEEEC
Q psy6049 74 EWVRVGEYVE 83 (241)
Q Consensus 74 ~~v~VG~~~~ 83 (241)
.++.||.|..
T Consensus 365 ~~~~v~~w~~ 374 (392)
T 3lkb_A 365 RFVPVTEPFT 374 (392)
T ss_dssp EEEECSCCBC
T ss_pred EEEEeccccc
Confidence 4678888864
No 32
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=54.37 E-value=4.6 Score=34.36 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=41.2
Q ss_pred hHHHHHhhhhhhhCCCc-CCCCCceecccccccc-eecCCCCCeEEeccC---CCCcceeeEEEeEEcCCCce
Q psy6049 6 TYFVMVTYLPNKLGIHV-DFNTPRVKFPPRADND-NIAGLSGDKFKFDAN---GDGPARYNIIHFKEMSPGSY 73 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~-~~~~~~~~l~~yL~~v-~F~~~~g~~v~Fd~n---Gd~~~~YdI~n~~~~~~g~~ 73 (241)
++.+++.||.+...... +....+-.+.+.|+++ .|.+..| .+.|+++ |+....+.|++++ +|.+
T Consensus 290 a~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G-~~~f~~~~~~g~~~~~~~i~~~~---~G~~ 358 (362)
T 3snr_A 290 AFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQG-VYNFTETDRYGLDDRSRILLTVK---NGKY 358 (362)
T ss_dssp HHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSC-EECCCSSCSSCCCGGGCEEEEEE---TTEE
T ss_pred HHHHHHHHHHHhhccccCCCcchHHHHHHHHHhcCCccccee-eEEeCCCCCCCCCCCCeEEEEEE---CCEE
Confidence 56788888887642210 1011134688889998 8999888 4999876 4444557777764 5543
No 33
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=42.65 E-value=31 Score=29.50 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=36.0
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccc-eecC-CCCCeEEeccCCCCccee
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADND-NIAG-LSGDKFKFDANGDGPARY 60 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v-~F~~-~~g~~v~Fd~nGd~~~~Y 60 (241)
++.+++.||.+. +.++.+-.+...|+++ .|.+ ..| .+.|+++++....+
T Consensus 292 a~~~~~~al~~a-----g~~~~~~~v~~aL~~~~~~~~~~~g-~i~f~~~~~~~~~~ 342 (364)
T 3lop_A 292 AAKVLAEAIRRA-----GPKPTREQVRHALTELRDYDVGGGF-TVDFTDRSRPGSHY 342 (364)
T ss_dssp HHHHHHHHHHHH-----CSSCCHHHHHHHHHTCEEEESSTTC-EEECSSTTSCSCCC
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCccCCCCe-eeecCCCCcCCcce
Confidence 567788888875 1234566788999999 7998 666 79999887655444
No 34
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.16 E-value=9 Score=33.47 Aligned_cols=72 Identities=8% Similarity=0.195 Sum_probs=44.9
Q ss_pred hHHHHHhhhhhhhCCCcCCCCCceecccccccceec--CCCCCeEEeccC-CCCcceeeEEEeEEcCCCceeEEEEEEEE
Q psy6049 6 TYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIA--GLSGDKFKFDAN-GDGPARYNIIHFKEMSPGSYEWVRVGEYV 82 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~~~~~~~~~l~~yL~~v~F~--~~~g~~v~Fd~n-Gd~~~~YdI~n~~~~~~g~~~~v~VG~~~ 82 (241)
++.+++.||.+...-. .....+-.+...|++..|. |.+|..+.||++ ++....+.|.++. .+|. ++.|+.|.
T Consensus 296 a~~~l~~Al~~a~~~g-~~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~--~~G~--~~~v~~~~ 370 (391)
T 3eaf_A 296 NVWLLIKAIESVTSQD-LQERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLG--ENGE--LQLMGKFE 370 (391)
T ss_dssp HHHHHHHHHTTSCHHH-HHHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEEC--TTSS--EEEEEEEC
T ss_pred HHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEe--cCCE--EEEeeeec
Confidence 4566777776532000 0023455688888888888 777735899975 4555667777662 3564 56777775
No 35
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=37.20 E-value=11 Score=32.25 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=38.5
Q ss_pred hHHHHHhhhhhhhCCCc-CCCCCceecccccccc-eecCCCCCeEEeccC---CCCcceeeEEEeE
Q psy6049 6 TYFVMVTYLPNKLGIHV-DFNTPRVKFPPRADND-NIAGLSGDKFKFDAN---GDGPARYNIIHFK 66 (241)
Q Consensus 6 ~~~~ma~aLh~~l~~~~-~~~~~~~~l~~yL~~v-~F~~~~g~~v~Fd~n---Gd~~~~YdI~n~~ 66 (241)
++.+++.||.+...... +....+-.+.+.|+++ .|.+..| .+.|+.+ |+....+.|++++
T Consensus 314 a~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G-~~~f~~~~~~g~~~~~~~i~~~~ 378 (386)
T 3sg0_A 314 SMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNG-LSNMTPDNHNGYDERSAFLIEIR 378 (386)
T ss_dssp HHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTE-EECCCSSCSSCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccce-eEEECCCcCCCCCCCceEEEEEE
Confidence 56678888887642211 1011134688889998 8999888 5999865 4444557777774
No 36
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=30.95 E-value=15 Score=28.42 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=13.6
Q ss_pred ccccCcCCCCceeeeeCCCCeeEEccccCCC
Q psy6049 121 SVCSLPCDRGQAKQYLEGESCCWHCFNCTQY 151 (241)
Q Consensus 121 SvCS~~C~pG~rK~~~~g~~CCw~Cv~C~~g 151 (241)
+.|-..|+||++.... |=.|.+|++|
T Consensus 22 ~~~C~~CppG~~~~~~-----~t~C~pC~~g 47 (130)
T 1du3_A 22 SPSEGLCPPGHHISED-----GRDCISCKYG 47 (130)
T ss_dssp CCBTTBBCTTEEECSS-----SSCEEECCTT
T ss_pred CCccCCCCCCceecCC-----CCcCccCCCc
Confidence 4455666666654321 2345556555
No 37
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=24.97 E-value=32 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=14.1
Q ss_pred CcccccCcCCCCceeeee
Q psy6049 119 PESVCSLPCDRGQAKQYL 136 (241)
Q Consensus 119 P~SvCS~~C~pG~rK~~~ 136 (241)
+=|.||..|..|.+...+
T Consensus 10 ~Ws~CS~tCG~G~~~R~r 27 (49)
T 2bbx_A 10 EWSPCSVTCGKGTRSRKR 27 (49)
T ss_dssp CCCCCSSSSSSSEEEEEC
T ss_pred CcccccCcCCCCeEEEEe
Confidence 347899999999876654
No 38
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=24.57 E-value=40 Score=27.26 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.7
Q ss_pred cccccCcCCCCceee
Q psy6049 120 ESVCSLPCDRGQAKQ 134 (241)
Q Consensus 120 ~SvCS~~C~pG~rK~ 134 (241)
..+|-..|+||++..
T Consensus 16 ~~~cC~~CppG~~~~ 30 (171)
T 3urf_Z 16 HQLLCDKCPPGTYLK 30 (171)
T ss_dssp SCCEEECBCTTEEEE
T ss_pred CCCCCCCCCCCceec
Confidence 345667777777654
No 39
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=23.06 E-value=33 Score=21.93 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=13.9
Q ss_pred CcccccCcCCCCceeeee
Q psy6049 119 PESVCSLPCDRGQAKQYL 136 (241)
Q Consensus 119 P~SvCS~~C~pG~rK~~~ 136 (241)
+=|.||.+|..|.+...+
T Consensus 12 ~Ws~CS~tCG~G~~~R~R 29 (56)
T 1vex_A 12 EWSDCSVTCGKGMRTRQR 29 (56)
T ss_dssp CCCCCSCSSBSCEEEEEC
T ss_pred CCCCcCccCCCCCEEEEE
Confidence 347899999999876653
No 40
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=22.75 E-value=15 Score=26.24 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=8.4
Q ss_pred CeeEEccccC
Q psy6049 140 SCCWHCFNCT 149 (241)
Q Consensus 140 ~CCw~Cv~C~ 149 (241)
.|||+|..|.
T Consensus 32 rccyHCqvCF 41 (75)
T 1tvs_A 32 RPNYHCQLCF 41 (75)
T ss_dssp CCCSSSHHHH
T ss_pred cceeeehhhh
Confidence 5999998884
No 41
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=21.50 E-value=24 Score=25.33 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.9
Q ss_pred CcccccCcCCCCceeeee
Q psy6049 119 PESVCSLPCDRGQAKQYL 136 (241)
Q Consensus 119 P~SvCS~~C~pG~rK~~~ 136 (241)
+=|.||..|..|.+.+.+
T Consensus 25 ~WS~CSvTCG~Gvq~R~R 42 (77)
T 3vdj_A 25 EWSPCSVTCGNGIQVRIK 42 (77)
T ss_dssp SCCCCSCSSSEEEEEEEC
T ss_pred cCCCCCCcCCCCeEEeee
Confidence 568899999999877654
Done!