RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6049
(241 letters)
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 85.6 bits (212), Expect = 2e-19
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 44 SGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITD 103
+ KFD GDG RYN+ + + + G Y +++VG + E L L++
Sbjct: 426 ADSIVKFDTFGDGMGRYNVFNLQ-QTGGKYSYLKVGHWAE-TLSLDVD------------ 471
Query: 104 GMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH 152
I + P S CS PC + K G+ CCW C C Y
Sbjct: 472 ----SIHWSRNSV--PTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYE 514
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 60.3 bits (146), Expect = 9e-11
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 37 NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
+ G+SG++ FD GD P RY+I++ + Y++V VG + EG L ++
Sbjct: 429 KSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 481
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 57.2 bits (138), Expect = 9e-10
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 37 NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLS 91
N N G +G F+ NGD P RY+I ++ + + + +G++ + EL+LN+
Sbjct: 422 NVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD-ELQLNIE 475
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 54.0 bits (129), Expect = 9e-09
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 37 NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGP 96
N G++G DANGD +++I ++ G+ E +G+Y E R +
Sbjct: 351 NRTFEGIAGQ-VSIDANGDRYGDFSVIAMTDVEAGTQE--VIGDYFGKEGRFEMRPNVKY 407
Query: 97 YFVEITDGMPQEIQFKAEHPRPPESVCSLPC 127
+ + + + R E S PC
Sbjct: 408 PWGPLKLRIDE--------NRIVEHTNSSPC 430
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 51.3 bits (123), Expect = 8e-08
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 28 RVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELR 87
++ F + + + KFD GDG RYN+ +F+ G Y +++VG + E L
Sbjct: 412 KINFTAPFNPNKD---ADSIVKFDTFGDGMGRYNVFNFQ-NVGGKYSYLKVGHWAE-TLS 466
Query: 88 LNLS 91
L+++
Sbjct: 467 LDVN 470
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 46.4 bits (110), Expect = 3e-06
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 42 GLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEI 101
G++G F NG+ F++ V+VGEY L +
Sbjct: 369 GVTGQ-VVFR-NGERMGTIKFTQFQD-----SREVKVGEYNAVADTLEIIND-------- 413
Query: 102 TDGMPQEIQFKAEHPRPPESVCSLPCDR 129
I+F+ PP+ D+
Sbjct: 414 ------TIRFQGS--EPPKDDYKDDDDK 433
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 42.4 bits (99), Expect = 6e-05
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 37 NDNIAGLSGDKFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLS 91
+ + +F+ +GD A+Y+I++ + + V+VG + + N
Sbjct: 327 SSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNR-----KLVQVGIFNGSYIIQNDR 377
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 34.4 bits (78), Expect = 0.027
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 43 LSGDKFKFDANGDGP-ARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
G F +G + II +W RVG++ + L++
Sbjct: 314 FEGRDLSFSEDGYQMHPKLVIILLN----KERKWERVGKWKDKSLQMK 357
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.078
Identities = 46/297 (15%), Positives = 80/297 (26%), Gaps = 127/297 (42%)
Query: 50 FDANGDGPAR-YNI--------IHFKEMSP--GSYEWVRVGEYVE--GELRLNLS---GK 93
F A G+G A+ I +F+E+ +Y + VG+ ++ E L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLD 204
Query: 94 FGPYFVEITDGMPQEIQFKA--EHP--RPPESV-----CSLP-------------C---- 127
F Q + E+P P + S P
Sbjct: 205 AEKVF-------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 128 -DRGQAKQYLEGESCC---------------WHCF--NCTQYHEPLLTWTG---KPHYPT 166
G+ + YL+G + W F + + +L + G YP
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPN 316
Query: 167 REDNLLVCASFI-----SASYMIAF-GYP----------------------IVLI----- 193
+ + S M++ I L+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 194 -VVC----TVYAVLT--RNI--PEAFNESKHIGEFSTVGKPFGSRTFKRKIKAHRSF 241
VV ++Y + R P ++S+ PF +RK+K F
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---------IPFS----ERKLKFSNRF 420
Score = 29.6 bits (66), Expect = 1.1
Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 102/236 (43%)
Query: 18 LGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSP-----G- 71
+G+ P PP D++ N +G SP
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLE-----------NNEGVP----------SPMLSISNL 344
Query: 72 SYEWV-----RVGEYVEGELRLNLSGKFGP-YFVEITDGMPQEIQFKAEHPRPPESVCSL 125
+ E V + ++ ++ +S G V ++ G PP+S+ L
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VS-G-------------PPQSLYGL 389
Query: 126 ---------PCDRGQAKQ-YLEGESCCWHCFN--CTQYHEPLLT---------------- 157
P Q++ + E + + F + +H LL
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 158 WTGK----PHYPT------RE------DNLLVC----------ASFISASYMIAFG 187
+ K P Y T R + ++ C + A++++ FG
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 30.9 bits (69), Expect = 0.37
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 48 FKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEY 81
K D NGD +++ M P + + V Y
Sbjct: 364 LKIDRNGDRDTDFSLWD---MDPETGAFRVVLNY 394
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 28.7 bits (64), Expect = 0.40
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 123 CSLPCDRGQAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVC 174
CS P +++ + WH CFNC + L GK ++ + C
Sbjct: 11 CSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL---VGKGFLT--QNKEIFC 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 2.0
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 7/60 (11%)
Query: 65 FKEMSPGSYEWVRVGEYVEGELRL----NLSGKFGPYFVEITDGM---PQEIQFKAEHPR 117
+ W+ + E L L + P + +D I R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 27.0 bits (60), Expect = 3.1
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 127 CDRG-QAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVC 174
CD + +Y + E+ WH F C L G+ + ++ VC
Sbjct: 9 CDELIFSNEYTQAENQNWHLKHFCCFDCDSIL---AGEIYVM--VNDKPVC 54
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 27.6 bits (62), Expect = 4.3
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 39 NIAGLSGDKFKFDANGD--GPARYNIIHFKEMSPGSYEWVRVGEYVE 83
+ G + FD GD P Y + +K+ G + +++ G +
Sbjct: 309 SFPTALG-EISFDEKGDPKLPG-YVMYEWKKGPDGKFTYIQQGSHHH 353
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 25.9 bits (57), Expect = 4.9
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 127 CDRGQAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVC 174
C G ++ H CF C + L K ++ + L C
Sbjct: 31 CGSGIVGAVVKARDKYRHPECFVCADCNLNL---KQKGYFF--VEGELYC 75
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 25.5 bits (56), Expect = 5.9
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 121 SVCSLP-CDRGQAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVCAS 176
+ C P G+ + E WH CF+C + L K + C
Sbjct: 19 AGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL---ANKRFVF--HQEQVYCPD 72
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A
{Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A
2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Length = 155
Score = 26.1 bits (57), Expect = 7.0
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 14/73 (19%)
Query: 18 LGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDG------------PARYNIIHF 65
G V ++KF PR + + G F+ D P +
Sbjct: 51 FGEGVRNVITQIKFCPR--SGYEQRMIGGIFQGANKEDFSDAVTLFTITSLPGSGTLTSV 108
Query: 66 KEMSPGSYEWVRV 78
+P + +VR
Sbjct: 109 DVDNPTGFRYVRY 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 25.5 bits (56), Expect = 7.5
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 103 DGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWH--CFNCTQYHEPLLTWTG 160
D + Q + R P +C+ C++ +L WH FNC +
Sbjct: 10 DTLVQRAEHIPAGKRTP--MCA-HCNQVIRGPFLVALGKSWHPEEFNCAHCKNTM---AY 63
Query: 161 KPHYPTREDNLLVC 174
E L C
Sbjct: 64 IGFVE--EKGALYC 75
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 26.2 bits (57), Expect = 8.1
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 117 RPPESVCSLPCDRGQAKQYLEGESCCWHC 145
++ S RG + + CW C
Sbjct: 147 VKIDTPTSNLPTRGTLTSLFQEDLKCWRC 175
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 24.6 bits (54), Expect = 9.7
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 127 CDR--GQAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVC 174
C + LE WH CF C+ +PL + P + C
Sbjct: 11 CGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL---GSRSFVP--DKGAHYC 57
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 25.0 bits (55), Expect = 9.9
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 127 CDRGQAKQYLEGESCCWH--CFNCTQYHEPLLTWTGKPHYPTREDNLLVC 174
C+R + YL WH CF C + + D C
Sbjct: 21 CNRPVLENYLSAMDTVWHPECFVCGDCFTSF---STGSFFE--LDGRPFC 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.453
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,895,752
Number of extensions: 233801
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 40
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)