RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6049
         (241 letters)



>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 62.3 bits (150), Expect = 7e-12
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 37  NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
             +  G+SG++  FD  GD P RY+I++ +      Y++V VG + EG L ++
Sbjct: 421 KSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 473


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 37  NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNL 90
           N    G++G +   DANGD    +++I   ++  G+     +G+Y   E R  +
Sbjct: 349 NRTFEGIAG-QVSIDANGDRYGDFSVIAMTDVEAGTQ--EVIGDYFGKEGRFEM 399


>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 37  NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEY 81
           N +  G++G   K D NGD    +++     M P +  +  V  Y
Sbjct: 354 NRSFQGVTG-YLKIDRNGDRDTDFSLWD---MDPETGAFRVVLNY 394


>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52
           recombinase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 94  FGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESC 141
           FG    + T    Q IQ        PE + S     GQ   Y+EG   
Sbjct: 2   FGQC--QYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRV 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 983,038
Number of extensions: 47276
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 5
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)